Multiple sequence alignment - TraesCS2D01G036700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G036700 chr2D 100.000 2179 0 0 920 3098 13753614 13751436 0.000000e+00 4024.0
1 TraesCS2D01G036700 chr2D 100.000 438 0 0 1 438 13754533 13754096 0.000000e+00 809.0
2 TraesCS2D01G036700 chr2A 93.063 1355 58 20 921 2254 15944549 15943210 0.000000e+00 1949.0
3 TraesCS2D01G036700 chr2A 98.024 253 5 0 186 438 15944793 15944541 1.020000e-119 440.0
4 TraesCS2D01G036700 chr2A 94.366 71 4 0 2272 2342 15943222 15943152 3.270000e-20 110.0
5 TraesCS2D01G036700 chr1D 91.699 518 35 4 2584 3098 51417010 51416498 0.000000e+00 712.0
6 TraesCS2D01G036700 chr1D 90.927 518 39 4 2584 3098 51146555 51146043 0.000000e+00 689.0
7 TraesCS2D01G036700 chr1D 90.927 518 39 4 2584 3098 51309454 51308942 0.000000e+00 689.0
8 TraesCS2D01G036700 chr1D 92.806 139 8 2 2378 2514 201111666 201111528 1.880000e-47 200.0
9 TraesCS2D01G036700 chr1D 84.615 65 10 0 1200 1264 62564148 62564212 7.170000e-07 65.8
10 TraesCS2D01G036700 chr7D 92.857 140 7 3 2378 2514 192762946 192763085 1.880000e-47 200.0
11 TraesCS2D01G036700 chr7D 86.441 59 8 0 1206 1264 561700273 561700331 7.170000e-07 65.8
12 TraesCS2D01G036700 chr7D 88.679 53 6 0 1209 1261 561758070 561758018 7.170000e-07 65.8
13 TraesCS2D01G036700 chr6D 92.143 140 8 3 2378 2514 81017908 81017769 8.770000e-46 195.0
14 TraesCS2D01G036700 chr6D 92.086 139 9 2 2378 2514 155384014 155384152 8.770000e-46 195.0
15 TraesCS2D01G036700 chr6D 86.747 83 11 0 2572 2654 89026015 89026097 3.290000e-15 93.5
16 TraesCS2D01G036700 chr1B 90.511 137 11 2 2383 2517 185966685 185966549 2.450000e-41 180.0
17 TraesCS2D01G036700 chr3D 94.783 115 5 1 2399 2512 460979132 460979246 8.830000e-41 178.0
18 TraesCS2D01G036700 chr3D 89.928 139 11 3 2378 2513 417992034 417991896 3.180000e-40 176.0
19 TraesCS2D01G036700 chrUn 88.966 145 13 3 2378 2519 60957106 60957250 3.180000e-40 176.0
20 TraesCS2D01G036700 chr6B 86.567 134 16 2 2383 2515 161788240 161788108 2.490000e-31 147.0
21 TraesCS2D01G036700 chr7B 93.421 76 5 0 2583 2658 748771110 748771185 2.520000e-21 113.0
22 TraesCS2D01G036700 chr7B 90.625 64 4 2 2583 2645 355871749 355871687 1.980000e-12 84.2
23 TraesCS2D01G036700 chr7B 93.878 49 2 1 2584 2631 594901208 594901160 4.290000e-09 73.1
24 TraesCS2D01G036700 chr7B 89.091 55 6 0 1209 1263 610737602 610737548 5.540000e-08 69.4
25 TraesCS2D01G036700 chr7B 86.885 61 7 1 1206 1265 610478721 610478781 1.990000e-07 67.6
26 TraesCS2D01G036700 chr5B 85.714 91 8 5 163 252 677752937 677752851 1.180000e-14 91.6
27 TraesCS2D01G036700 chr5A 87.500 72 7 2 2581 2651 532075373 532075443 7.120000e-12 82.4
28 TraesCS2D01G036700 chr3A 92.453 53 2 2 171 223 561032522 561032472 1.190000e-09 75.0
29 TraesCS2D01G036700 chr4A 85.714 70 8 2 2584 2652 613737209 613737277 4.290000e-09 73.1
30 TraesCS2D01G036700 chr4D 85.938 64 9 0 1204 1267 81666275 81666212 5.540000e-08 69.4
31 TraesCS2D01G036700 chr7A 86.441 59 8 0 1206 1264 646477677 646477735 7.170000e-07 65.8
32 TraesCS2D01G036700 chr1A 84.615 65 10 0 1200 1264 60537486 60537550 7.170000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G036700 chr2D 13751436 13754533 3097 True 2416.5 4024 100.000 1 3098 2 chr2D.!!$R1 3097
1 TraesCS2D01G036700 chr2A 15943152 15944793 1641 True 833.0 1949 95.151 186 2342 3 chr2A.!!$R1 2156
2 TraesCS2D01G036700 chr1D 51416498 51417010 512 True 712.0 712 91.699 2584 3098 1 chr1D.!!$R3 514
3 TraesCS2D01G036700 chr1D 51146043 51146555 512 True 689.0 689 90.927 2584 3098 1 chr1D.!!$R1 514
4 TraesCS2D01G036700 chr1D 51308942 51309454 512 True 689.0 689 90.927 2584 3098 1 chr1D.!!$R2 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.103208 CCGGCTCCTGTATGAGTGAC 59.897 60.0 0.00 0.0 34.74 3.67 F
182 183 0.180642 TGTTGCCCACGTAAACTGGA 59.819 50.0 0.00 0.0 0.00 3.86 F
939 940 0.306840 CACACACACTCTGCAGCTTG 59.693 55.0 9.47 10.8 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1116 1124 0.171903 CGTAGTAACCCACGTCCAGG 59.828 60.0 0.00 0.00 33.56 4.45 R
1317 1328 0.392729 TGCATGCATGACCGATCACA 60.393 50.0 30.64 12.71 37.79 3.58 R
2385 2409 0.035739 TACGAACTCCCAACCTTGCC 59.964 55.0 0.00 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 8.484641 TTTTTGTTCAAATTTGTATGTGAGCA 57.515 26.923 17.47 3.26 37.42 4.26
58 59 7.462109 TTTGTTCAAATTTGTATGTGAGCAC 57.538 32.000 17.47 0.00 38.48 4.40
59 60 5.211454 TGTTCAAATTTGTATGTGAGCACG 58.789 37.500 17.47 0.00 35.17 5.34
60 61 4.418013 TCAAATTTGTATGTGAGCACGG 57.582 40.909 17.47 0.00 0.00 4.94
61 62 3.818210 TCAAATTTGTATGTGAGCACGGT 59.182 39.130 17.47 0.00 0.00 4.83
62 63 4.277174 TCAAATTTGTATGTGAGCACGGTT 59.723 37.500 17.47 0.00 0.00 4.44
63 64 3.829886 ATTTGTATGTGAGCACGGTTG 57.170 42.857 0.00 0.00 0.00 3.77
64 65 1.518325 TTGTATGTGAGCACGGTTGG 58.482 50.000 0.00 0.00 0.00 3.77
65 66 0.682292 TGTATGTGAGCACGGTTGGA 59.318 50.000 0.00 0.00 0.00 3.53
66 67 1.277842 TGTATGTGAGCACGGTTGGAT 59.722 47.619 0.00 0.00 0.00 3.41
67 68 1.665679 GTATGTGAGCACGGTTGGATG 59.334 52.381 0.00 0.00 0.00 3.51
68 69 0.677731 ATGTGAGCACGGTTGGATGG 60.678 55.000 0.00 0.00 0.00 3.51
69 70 2.359850 TGAGCACGGTTGGATGGC 60.360 61.111 0.00 0.00 0.00 4.40
70 71 3.134127 GAGCACGGTTGGATGGCC 61.134 66.667 0.00 0.00 0.00 5.36
77 78 4.115199 GTTGGATGGCCGGCTCCT 62.115 66.667 29.08 14.77 36.79 3.69
78 79 4.113815 TTGGATGGCCGGCTCCTG 62.114 66.667 29.08 0.00 36.79 3.86
80 81 3.161450 GGATGGCCGGCTCCTGTA 61.161 66.667 28.56 6.45 0.00 2.74
81 82 2.520536 GGATGGCCGGCTCCTGTAT 61.521 63.158 28.56 11.16 0.00 2.29
82 83 1.302033 GATGGCCGGCTCCTGTATG 60.302 63.158 28.56 0.00 0.00 2.39
83 84 1.758440 GATGGCCGGCTCCTGTATGA 61.758 60.000 28.56 0.00 0.00 2.15
84 85 1.762522 ATGGCCGGCTCCTGTATGAG 61.763 60.000 28.56 0.00 35.40 2.90
85 86 2.435693 GGCCGGCTCCTGTATGAGT 61.436 63.158 28.56 0.00 34.74 3.41
86 87 1.227380 GCCGGCTCCTGTATGAGTG 60.227 63.158 22.15 0.00 34.74 3.51
87 88 1.676678 GCCGGCTCCTGTATGAGTGA 61.677 60.000 22.15 0.00 34.74 3.41
88 89 0.103208 CCGGCTCCTGTATGAGTGAC 59.897 60.000 0.00 0.00 34.74 3.67
89 90 0.103208 CGGCTCCTGTATGAGTGACC 59.897 60.000 0.00 0.00 34.74 4.02
90 91 0.103208 GGCTCCTGTATGAGTGACCG 59.897 60.000 0.00 0.00 34.74 4.79
91 92 0.103208 GCTCCTGTATGAGTGACCGG 59.897 60.000 0.00 0.00 34.74 5.28
92 93 1.763968 CTCCTGTATGAGTGACCGGA 58.236 55.000 9.46 0.00 0.00 5.14
93 94 1.405821 CTCCTGTATGAGTGACCGGAC 59.594 57.143 9.46 1.07 0.00 4.79
94 95 1.182667 CCTGTATGAGTGACCGGACA 58.817 55.000 9.46 5.04 0.00 4.02
95 96 1.757118 CCTGTATGAGTGACCGGACAT 59.243 52.381 9.46 8.16 0.00 3.06
96 97 2.168521 CCTGTATGAGTGACCGGACATT 59.831 50.000 9.46 4.54 0.00 2.71
97 98 3.383505 CCTGTATGAGTGACCGGACATTA 59.616 47.826 9.46 0.00 0.00 1.90
98 99 4.499865 CCTGTATGAGTGACCGGACATTAG 60.500 50.000 9.46 0.00 0.00 1.73
99 100 4.021229 TGTATGAGTGACCGGACATTAGT 58.979 43.478 9.46 0.00 0.00 2.24
100 101 3.802948 ATGAGTGACCGGACATTAGTC 57.197 47.619 9.46 5.05 44.21 2.59
113 114 5.577860 GACATTAGTCCGGATCGATTTTC 57.422 43.478 7.81 0.00 38.89 2.29
114 115 5.018539 ACATTAGTCCGGATCGATTTTCA 57.981 39.130 7.81 0.00 0.00 2.69
115 116 5.050490 ACATTAGTCCGGATCGATTTTCAG 58.950 41.667 7.81 0.00 0.00 3.02
116 117 4.994907 TTAGTCCGGATCGATTTTCAGA 57.005 40.909 7.81 0.00 0.00 3.27
117 118 3.166489 AGTCCGGATCGATTTTCAGAC 57.834 47.619 7.81 3.33 0.00 3.51
118 119 2.496070 AGTCCGGATCGATTTTCAGACA 59.504 45.455 7.81 0.00 0.00 3.41
119 120 3.056107 AGTCCGGATCGATTTTCAGACAA 60.056 43.478 7.81 0.00 0.00 3.18
120 121 3.682858 GTCCGGATCGATTTTCAGACAAA 59.317 43.478 7.81 0.00 0.00 2.83
121 122 4.332819 GTCCGGATCGATTTTCAGACAAAT 59.667 41.667 7.81 0.00 0.00 2.32
122 123 5.522460 GTCCGGATCGATTTTCAGACAAATA 59.478 40.000 7.81 0.00 0.00 1.40
123 124 6.202954 GTCCGGATCGATTTTCAGACAAATAT 59.797 38.462 7.81 0.00 0.00 1.28
124 125 6.423905 TCCGGATCGATTTTCAGACAAATATC 59.576 38.462 0.00 0.00 0.00 1.63
125 126 6.202762 CCGGATCGATTTTCAGACAAATATCA 59.797 38.462 0.00 0.00 0.00 2.15
126 127 7.095060 CCGGATCGATTTTCAGACAAATATCAT 60.095 37.037 0.00 0.00 0.00 2.45
127 128 7.743400 CGGATCGATTTTCAGACAAATATCATG 59.257 37.037 0.00 0.00 0.00 3.07
128 129 8.562892 GGATCGATTTTCAGACAAATATCATGT 58.437 33.333 0.00 0.00 0.00 3.21
129 130 9.591404 GATCGATTTTCAGACAAATATCATGTC 57.409 33.333 0.00 11.72 45.94 3.06
139 140 7.303634 GACAAATATCATGTCTGTTTACGGT 57.696 36.000 12.18 0.00 43.03 4.83
140 141 7.303634 ACAAATATCATGTCTGTTTACGGTC 57.696 36.000 0.00 0.00 0.00 4.79
141 142 6.315393 ACAAATATCATGTCTGTTTACGGTCC 59.685 38.462 0.00 0.00 0.00 4.46
142 143 2.357327 TCATGTCTGTTTACGGTCCG 57.643 50.000 10.48 10.48 0.00 4.79
143 144 1.614903 TCATGTCTGTTTACGGTCCGT 59.385 47.619 22.66 22.66 44.35 4.69
144 145 1.724623 CATGTCTGTTTACGGTCCGTG 59.275 52.381 27.20 9.79 41.39 4.94
145 146 0.746063 TGTCTGTTTACGGTCCGTGT 59.254 50.000 27.20 3.04 41.39 4.49
146 147 1.136695 TGTCTGTTTACGGTCCGTGTT 59.863 47.619 27.20 2.21 41.39 3.32
147 148 1.523934 GTCTGTTTACGGTCCGTGTTG 59.476 52.381 27.20 11.90 41.39 3.33
148 149 0.863144 CTGTTTACGGTCCGTGTTGG 59.137 55.000 27.20 9.18 41.39 3.77
156 157 2.668632 TCCGTGTTGGAGATGCCC 59.331 61.111 0.00 0.00 43.74 5.36
157 158 2.438434 CCGTGTTGGAGATGCCCC 60.438 66.667 0.00 0.00 42.00 5.80
158 159 2.438434 CGTGTTGGAGATGCCCCC 60.438 66.667 0.00 0.00 34.97 5.40
159 160 2.971598 CGTGTTGGAGATGCCCCCT 61.972 63.158 0.00 0.00 34.97 4.79
160 161 1.384191 GTGTTGGAGATGCCCCCTT 59.616 57.895 0.00 0.00 34.97 3.95
161 162 0.681243 GTGTTGGAGATGCCCCCTTC 60.681 60.000 0.00 0.00 34.97 3.46
162 163 1.076705 GTTGGAGATGCCCCCTTCC 60.077 63.158 0.00 0.00 34.97 3.46
163 164 1.230281 TTGGAGATGCCCCCTTCCT 60.230 57.895 0.00 0.00 34.97 3.36
164 165 1.574526 TTGGAGATGCCCCCTTCCTG 61.575 60.000 0.00 0.00 34.97 3.86
165 166 2.003548 GGAGATGCCCCCTTCCTGT 61.004 63.158 0.00 0.00 0.00 4.00
166 167 1.575447 GGAGATGCCCCCTTCCTGTT 61.575 60.000 0.00 0.00 0.00 3.16
167 168 0.394899 GAGATGCCCCCTTCCTGTTG 60.395 60.000 0.00 0.00 0.00 3.33
168 169 2.037847 ATGCCCCCTTCCTGTTGC 59.962 61.111 0.00 0.00 0.00 4.17
169 170 3.607084 ATGCCCCCTTCCTGTTGCC 62.607 63.158 0.00 0.00 0.00 4.52
171 172 3.589542 CCCCCTTCCTGTTGCCCA 61.590 66.667 0.00 0.00 0.00 5.36
172 173 2.283173 CCCCTTCCTGTTGCCCAC 60.283 66.667 0.00 0.00 0.00 4.61
173 174 2.672996 CCCTTCCTGTTGCCCACG 60.673 66.667 0.00 0.00 0.00 4.94
174 175 2.113139 CCTTCCTGTTGCCCACGT 59.887 61.111 0.00 0.00 0.00 4.49
175 176 1.373435 CCTTCCTGTTGCCCACGTA 59.627 57.895 0.00 0.00 0.00 3.57
176 177 0.250553 CCTTCCTGTTGCCCACGTAA 60.251 55.000 0.00 0.00 0.00 3.18
177 178 1.600023 CTTCCTGTTGCCCACGTAAA 58.400 50.000 0.00 0.00 0.00 2.01
178 179 1.265905 CTTCCTGTTGCCCACGTAAAC 59.734 52.381 0.00 0.00 0.00 2.01
179 180 0.470766 TCCTGTTGCCCACGTAAACT 59.529 50.000 0.00 0.00 0.00 2.66
180 181 0.591170 CCTGTTGCCCACGTAAACTG 59.409 55.000 0.00 0.00 0.00 3.16
181 182 0.591170 CTGTTGCCCACGTAAACTGG 59.409 55.000 0.00 0.00 0.00 4.00
182 183 0.180642 TGTTGCCCACGTAAACTGGA 59.819 50.000 0.00 0.00 0.00 3.86
183 184 1.202830 TGTTGCCCACGTAAACTGGAT 60.203 47.619 0.00 0.00 0.00 3.41
184 185 1.467342 GTTGCCCACGTAAACTGGATC 59.533 52.381 0.00 0.00 0.00 3.36
257 258 8.143835 CCTGGTGAGTGATTAAAGAAAAACATT 58.856 33.333 0.00 0.00 0.00 2.71
262 263 9.130661 TGAGTGATTAAAGAAAAACATTCAGGA 57.869 29.630 0.00 0.00 0.00 3.86
411 412 4.419522 ACAAAGTCAACACTCAACACAC 57.580 40.909 0.00 0.00 29.93 3.82
427 428 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
428 429 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
429 430 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
430 431 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
431 432 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
432 433 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
433 434 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
434 435 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
435 436 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
436 437 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
437 438 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
939 940 0.306840 CACACACACTCTGCAGCTTG 59.693 55.000 9.47 10.80 0.00 4.01
953 954 3.250762 TGCAGCTTGTACATCAAACTCAC 59.749 43.478 0.00 0.00 35.48 3.51
974 975 3.007723 ACCTCACCTATCAGCTATGCATG 59.992 47.826 10.16 0.26 0.00 4.06
976 977 1.730612 CACCTATCAGCTATGCATGCG 59.269 52.381 14.09 1.07 35.28 4.73
999 1004 3.181491 TGCATGCATCACATTCACATCAG 60.181 43.478 18.46 0.00 36.64 2.90
1010 1015 0.325602 TCACATCAGATGCAGCACCA 59.674 50.000 10.59 0.00 0.00 4.17
1025 1030 0.662619 CACCAACGACACAACATGCT 59.337 50.000 0.00 0.00 0.00 3.79
1026 1031 1.065401 CACCAACGACACAACATGCTT 59.935 47.619 0.00 0.00 0.00 3.91
1027 1032 2.289274 CACCAACGACACAACATGCTTA 59.711 45.455 0.00 0.00 0.00 3.09
1028 1033 2.289547 ACCAACGACACAACATGCTTAC 59.710 45.455 0.00 0.00 0.00 2.34
1029 1034 2.350388 CCAACGACACAACATGCTTACC 60.350 50.000 0.00 0.00 0.00 2.85
1030 1035 2.543777 ACGACACAACATGCTTACCT 57.456 45.000 0.00 0.00 0.00 3.08
1031 1036 2.846193 ACGACACAACATGCTTACCTT 58.154 42.857 0.00 0.00 0.00 3.50
1032 1037 2.806244 ACGACACAACATGCTTACCTTC 59.194 45.455 0.00 0.00 0.00 3.46
1033 1038 2.159841 CGACACAACATGCTTACCTTCG 60.160 50.000 0.00 0.00 0.00 3.79
1034 1039 3.064207 GACACAACATGCTTACCTTCGA 58.936 45.455 0.00 0.00 0.00 3.71
1035 1040 2.806244 ACACAACATGCTTACCTTCGAC 59.194 45.455 0.00 0.00 0.00 4.20
1036 1041 2.805671 CACAACATGCTTACCTTCGACA 59.194 45.455 0.00 0.00 0.00 4.35
1037 1042 3.436704 CACAACATGCTTACCTTCGACAT 59.563 43.478 0.00 0.00 0.00 3.06
1038 1043 3.436704 ACAACATGCTTACCTTCGACATG 59.563 43.478 8.01 8.01 42.92 3.21
1039 1044 2.009774 ACATGCTTACCTTCGACATGC 58.990 47.619 9.17 0.00 41.38 4.06
1125 1133 4.436998 GTCGGAGCCCTGGACGTG 62.437 72.222 0.00 0.00 0.00 4.49
1305 1316 2.223688 CCTCCATCTCAAGCTCTACGTG 60.224 54.545 0.00 0.00 0.00 4.49
1308 1319 0.811915 ATCTCAAGCTCTACGTGCGT 59.188 50.000 0.00 2.05 35.28 5.24
1325 1348 0.110688 CGTGTGCAACTTGTGATCGG 60.111 55.000 0.00 0.00 38.04 4.18
1338 1361 2.145536 GTGATCGGTCATGCATGCATA 58.854 47.619 31.73 17.26 36.60 3.14
1344 1367 0.956633 GTCATGCATGCATACAGGGG 59.043 55.000 31.73 18.58 34.91 4.79
1368 1391 2.568031 CGCGTCGGTGATGATCGTG 61.568 63.158 0.00 0.00 0.00 4.35
1369 1392 2.860628 GCGTCGGTGATGATCGTGC 61.861 63.158 0.00 0.00 0.00 5.34
1372 1395 2.961721 CGGTGATGATCGTGCCGG 60.962 66.667 15.90 0.00 38.86 6.13
1599 1622 2.531685 TCCAACCCCTGGGAGGTG 60.532 66.667 16.20 13.12 46.44 4.00
1857 1880 4.790861 GCGTTCCTCGACCCGGAC 62.791 72.222 0.73 0.00 42.86 4.79
1881 1904 3.474904 TTCGCCATCGACAACGCG 61.475 61.111 3.53 3.53 45.43 6.01
1899 1922 0.530650 CGTGCTACGGCCAGATGATT 60.531 55.000 2.24 0.00 38.08 2.57
2107 2130 4.378323 CGTACAACAAATGACACGTACGTA 59.622 41.667 22.34 6.15 44.21 3.57
2121 2144 4.547905 CGTACGCGGCCAGTCGAT 62.548 66.667 12.47 3.55 0.00 3.59
2132 2155 2.009042 GCCAGTCGATCAAGTTCCTGG 61.009 57.143 9.46 9.46 41.87 4.45
2156 2179 5.426504 CAGAGAAATTGCTGGAGTAGTCAT 58.573 41.667 0.00 0.00 0.00 3.06
2158 2181 7.044181 CAGAGAAATTGCTGGAGTAGTCATTA 58.956 38.462 0.00 0.00 0.00 1.90
2170 2194 9.999660 CTGGAGTAGTCATTACAGTAGTAGATA 57.000 37.037 0.00 0.00 34.56 1.98
2214 2238 6.097915 TCTCTTTGTTCTTGGTTAGATCGT 57.902 37.500 0.00 0.00 31.54 3.73
2250 2274 9.720769 CCTGATTAGGTTAAAGAAACTAGTCAA 57.279 33.333 8.66 0.00 45.62 3.18
2255 2279 9.760077 TTAGGTTAAAGAAACTAGTCAAGTGAG 57.240 33.333 0.00 0.00 36.22 3.51
2256 2280 7.793036 AGGTTAAAGAAACTAGTCAAGTGAGT 58.207 34.615 0.00 0.00 38.88 3.41
2257 2281 7.927092 AGGTTAAAGAAACTAGTCAAGTGAGTC 59.073 37.037 0.00 0.00 38.88 3.36
2258 2282 7.709613 GGTTAAAGAAACTAGTCAAGTGAGTCA 59.290 37.037 0.00 0.00 38.88 3.41
2259 2283 8.756864 GTTAAAGAAACTAGTCAAGTGAGTCAG 58.243 37.037 0.00 0.00 38.88 3.51
2260 2284 5.461032 AGAAACTAGTCAAGTGAGTCAGG 57.539 43.478 0.00 0.00 38.88 3.86
2261 2285 4.896482 AGAAACTAGTCAAGTGAGTCAGGT 59.104 41.667 0.00 0.00 38.88 4.00
2262 2286 4.857509 AACTAGTCAAGTGAGTCAGGTC 57.142 45.455 0.00 0.00 38.88 3.85
2263 2287 2.814919 ACTAGTCAAGTGAGTCAGGTCG 59.185 50.000 0.00 0.00 36.93 4.79
2264 2288 1.982660 AGTCAAGTGAGTCAGGTCGA 58.017 50.000 0.00 0.00 0.00 4.20
2265 2289 2.520069 AGTCAAGTGAGTCAGGTCGAT 58.480 47.619 0.00 0.00 0.00 3.59
2266 2290 2.230025 AGTCAAGTGAGTCAGGTCGATG 59.770 50.000 0.00 0.00 0.00 3.84
2267 2291 2.229062 GTCAAGTGAGTCAGGTCGATGA 59.771 50.000 0.00 0.00 0.00 2.92
2268 2292 3.092301 TCAAGTGAGTCAGGTCGATGAT 58.908 45.455 0.00 0.00 0.00 2.45
2269 2293 3.119352 TCAAGTGAGTCAGGTCGATGATG 60.119 47.826 0.00 0.00 0.00 3.07
2270 2294 2.451490 AGTGAGTCAGGTCGATGATGT 58.549 47.619 0.00 0.00 0.00 3.06
2289 2313 9.891828 GATGATGTAACTTGTGAAATGTTAACA 57.108 29.630 11.41 11.41 32.07 2.41
2294 2318 8.279800 TGTAACTTGTGAAATGTTAACATCTCG 58.720 33.333 21.02 7.19 35.10 4.04
2303 2327 5.677319 ATGTTAACATCTCGGAGAAAGGA 57.323 39.130 15.47 0.00 34.09 3.36
2307 2331 7.039882 TGTTAACATCTCGGAGAAAGGATTAC 58.960 38.462 12.40 5.64 34.09 1.89
2342 2366 1.269309 GCGAGCCGACACTGATTAGAT 60.269 52.381 0.00 0.00 0.00 1.98
2343 2367 2.799917 GCGAGCCGACACTGATTAGATT 60.800 50.000 0.00 0.00 0.00 2.40
2344 2368 3.550233 GCGAGCCGACACTGATTAGATTA 60.550 47.826 0.00 0.00 0.00 1.75
2345 2369 4.607955 CGAGCCGACACTGATTAGATTAA 58.392 43.478 0.00 0.00 0.00 1.40
2346 2370 4.677378 CGAGCCGACACTGATTAGATTAAG 59.323 45.833 0.00 0.00 0.00 1.85
2347 2371 4.950050 AGCCGACACTGATTAGATTAAGG 58.050 43.478 0.00 0.00 0.00 2.69
2348 2372 3.495001 GCCGACACTGATTAGATTAAGGC 59.505 47.826 0.00 0.00 0.00 4.35
2349 2373 4.693283 CCGACACTGATTAGATTAAGGCA 58.307 43.478 0.00 0.00 0.00 4.75
2350 2374 5.116180 CCGACACTGATTAGATTAAGGCAA 58.884 41.667 0.00 0.00 0.00 4.52
2351 2375 5.006746 CCGACACTGATTAGATTAAGGCAAC 59.993 44.000 0.00 0.00 0.00 4.17
2364 2388 3.912899 GGCAACTGAAATTGGGTGG 57.087 52.632 0.00 0.00 0.00 4.61
2365 2389 0.320683 GGCAACTGAAATTGGGTGGC 60.321 55.000 3.08 3.08 0.00 5.01
2366 2390 0.320683 GCAACTGAAATTGGGTGGCC 60.321 55.000 0.00 0.00 0.00 5.36
2367 2391 0.038343 CAACTGAAATTGGGTGGCCG 60.038 55.000 0.00 0.00 0.00 6.13
2368 2392 1.815817 AACTGAAATTGGGTGGCCGC 61.816 55.000 8.12 8.12 0.00 6.53
2369 2393 3.340953 CTGAAATTGGGTGGCCGCG 62.341 63.158 10.86 0.00 0.00 6.46
2370 2394 3.059386 GAAATTGGGTGGCCGCGA 61.059 61.111 8.23 0.00 0.00 5.87
2371 2395 3.051392 GAAATTGGGTGGCCGCGAG 62.051 63.158 8.23 0.00 0.00 5.03
2372 2396 3.561120 AAATTGGGTGGCCGCGAGA 62.561 57.895 8.23 0.00 0.00 4.04
2373 2397 3.561120 AATTGGGTGGCCGCGAGAA 62.561 57.895 8.23 2.86 0.00 2.87
2377 2401 4.373116 GGTGGCCGCGAGAACTGA 62.373 66.667 8.23 0.00 0.00 3.41
2378 2402 2.811317 GTGGCCGCGAGAACTGAG 60.811 66.667 8.23 0.00 0.00 3.35
2379 2403 4.742201 TGGCCGCGAGAACTGAGC 62.742 66.667 8.23 0.00 0.00 4.26
2380 2404 4.443266 GGCCGCGAGAACTGAGCT 62.443 66.667 8.23 0.00 0.00 4.09
2381 2405 2.490217 GCCGCGAGAACTGAGCTA 59.510 61.111 8.23 0.00 0.00 3.32
2382 2406 1.587613 GCCGCGAGAACTGAGCTAG 60.588 63.158 8.23 0.00 0.00 3.42
2383 2407 1.803943 CCGCGAGAACTGAGCTAGT 59.196 57.895 8.23 0.00 42.89 2.57
2391 2415 3.944476 ACTGAGCTAGTTGGCAAGG 57.056 52.632 0.00 0.00 35.67 3.61
2392 2416 1.059913 ACTGAGCTAGTTGGCAAGGT 58.940 50.000 0.00 0.00 35.67 3.50
2393 2417 1.421646 ACTGAGCTAGTTGGCAAGGTT 59.578 47.619 0.00 0.00 35.67 3.50
2394 2418 1.808945 CTGAGCTAGTTGGCAAGGTTG 59.191 52.381 0.00 0.00 34.17 3.77
2395 2419 1.168714 GAGCTAGTTGGCAAGGTTGG 58.831 55.000 0.00 0.00 34.17 3.77
2396 2420 0.251341 AGCTAGTTGGCAAGGTTGGG 60.251 55.000 0.00 0.00 34.17 4.12
2397 2421 0.251165 GCTAGTTGGCAAGGTTGGGA 60.251 55.000 0.00 0.00 0.00 4.37
2398 2422 1.826385 CTAGTTGGCAAGGTTGGGAG 58.174 55.000 0.00 0.00 0.00 4.30
2399 2423 1.073923 CTAGTTGGCAAGGTTGGGAGT 59.926 52.381 0.00 0.00 0.00 3.85
2400 2424 0.261696 AGTTGGCAAGGTTGGGAGTT 59.738 50.000 0.00 0.00 0.00 3.01
2401 2425 0.673985 GTTGGCAAGGTTGGGAGTTC 59.326 55.000 0.00 0.00 0.00 3.01
2402 2426 0.821711 TTGGCAAGGTTGGGAGTTCG 60.822 55.000 0.00 0.00 0.00 3.95
2403 2427 1.228154 GGCAAGGTTGGGAGTTCGT 60.228 57.895 0.00 0.00 0.00 3.85
2404 2428 0.035739 GGCAAGGTTGGGAGTTCGTA 59.964 55.000 0.00 0.00 0.00 3.43
2405 2429 1.439679 GCAAGGTTGGGAGTTCGTAG 58.560 55.000 0.00 0.00 0.00 3.51
2406 2430 1.439679 CAAGGTTGGGAGTTCGTAGC 58.560 55.000 0.00 0.00 0.00 3.58
2407 2431 0.323957 AAGGTTGGGAGTTCGTAGCC 59.676 55.000 0.00 0.00 0.00 3.93
2408 2432 0.834687 AGGTTGGGAGTTCGTAGCCA 60.835 55.000 0.00 0.00 0.00 4.75
2409 2433 0.391263 GGTTGGGAGTTCGTAGCCAG 60.391 60.000 0.00 0.00 0.00 4.85
2410 2434 1.019805 GTTGGGAGTTCGTAGCCAGC 61.020 60.000 0.00 0.00 0.00 4.85
2411 2435 2.180159 TTGGGAGTTCGTAGCCAGCC 62.180 60.000 0.00 0.00 0.00 4.85
2412 2436 2.187163 GGAGTTCGTAGCCAGCCC 59.813 66.667 0.00 0.00 0.00 5.19
2413 2437 2.656069 GGAGTTCGTAGCCAGCCCA 61.656 63.158 0.00 0.00 0.00 5.36
2414 2438 1.448013 GAGTTCGTAGCCAGCCCAC 60.448 63.158 0.00 0.00 0.00 4.61
2415 2439 2.436115 GTTCGTAGCCAGCCCACC 60.436 66.667 0.00 0.00 0.00 4.61
2416 2440 2.925706 TTCGTAGCCAGCCCACCA 60.926 61.111 0.00 0.00 0.00 4.17
2417 2441 2.954684 TTCGTAGCCAGCCCACCAG 61.955 63.158 0.00 0.00 0.00 4.00
2418 2442 4.473520 CGTAGCCAGCCCACCAGG 62.474 72.222 0.00 0.00 39.47 4.45
2429 2453 3.633361 CCACCAGGGTTCAAGTCTC 57.367 57.895 0.00 0.00 0.00 3.36
2430 2454 0.764890 CCACCAGGGTTCAAGTCTCA 59.235 55.000 0.00 0.00 0.00 3.27
2431 2455 1.271054 CCACCAGGGTTCAAGTCTCAG 60.271 57.143 0.00 0.00 0.00 3.35
2432 2456 0.398318 ACCAGGGTTCAAGTCTCAGC 59.602 55.000 0.00 0.00 0.00 4.26
2433 2457 0.689623 CCAGGGTTCAAGTCTCAGCT 59.310 55.000 0.00 0.00 0.00 4.24
2434 2458 1.072965 CCAGGGTTCAAGTCTCAGCTT 59.927 52.381 0.00 0.00 0.00 3.74
2435 2459 2.149578 CAGGGTTCAAGTCTCAGCTTG 58.850 52.381 3.23 3.23 45.18 4.01
2439 2463 3.504021 TCAAGTCTCAGCTTGAGCG 57.496 52.632 7.27 0.00 46.74 5.03
2440 2464 0.676184 TCAAGTCTCAGCTTGAGCGT 59.324 50.000 7.27 1.39 46.74 5.07
2441 2465 1.069204 TCAAGTCTCAGCTTGAGCGTT 59.931 47.619 7.27 2.70 46.74 4.84
2442 2466 1.869767 CAAGTCTCAGCTTGAGCGTTT 59.130 47.619 7.94 1.68 46.34 3.60
2443 2467 1.506493 AGTCTCAGCTTGAGCGTTTG 58.494 50.000 7.94 0.00 43.95 2.93
2444 2468 0.514691 GTCTCAGCTTGAGCGTTTGG 59.485 55.000 7.94 0.00 43.95 3.28
2445 2469 0.106708 TCTCAGCTTGAGCGTTTGGT 59.893 50.000 7.94 0.00 43.95 3.67
2446 2470 2.141553 TCTCAGCTTGAGCGTTTGGTG 61.142 52.381 7.94 0.00 43.95 4.17
2453 2477 2.972505 AGCGTTTGGTGCTCACGG 60.973 61.111 0.00 0.00 38.62 4.94
2454 2478 2.970324 GCGTTTGGTGCTCACGGA 60.970 61.111 0.00 0.00 34.42 4.69
2455 2479 2.954753 GCGTTTGGTGCTCACGGAG 61.955 63.158 0.00 0.00 34.42 4.63
2457 2481 1.157870 CGTTTGGTGCTCACGGAGTT 61.158 55.000 3.38 0.00 41.61 3.01
2458 2482 1.021968 GTTTGGTGCTCACGGAGTTT 58.978 50.000 3.38 0.00 41.61 2.66
2459 2483 1.404035 GTTTGGTGCTCACGGAGTTTT 59.596 47.619 3.38 0.00 41.61 2.43
2460 2484 1.757682 TTGGTGCTCACGGAGTTTTT 58.242 45.000 3.38 0.00 41.61 1.94
2491 2515 5.886960 AAAATGCCAACAAGCTAGTCTAG 57.113 39.130 2.18 2.18 0.00 2.43
2499 2523 3.951765 GCTAGTCTAGCCCGGGTT 58.048 61.111 24.63 20.60 45.95 4.11
2500 2524 1.442148 GCTAGTCTAGCCCGGGTTG 59.558 63.158 24.63 12.73 45.95 3.77
2501 2525 2.029307 GCTAGTCTAGCCCGGGTTGG 62.029 65.000 24.63 19.66 45.95 3.77
2502 2526 0.686769 CTAGTCTAGCCCGGGTTGGT 60.687 60.000 24.63 5.63 35.15 3.67
2503 2527 0.685458 TAGTCTAGCCCGGGTTGGTC 60.685 60.000 24.63 16.39 35.15 4.02
2504 2528 1.988406 GTCTAGCCCGGGTTGGTCT 60.988 63.158 24.63 12.87 35.15 3.85
2505 2529 1.229400 TCTAGCCCGGGTTGGTCTT 60.229 57.895 24.63 1.83 35.15 3.01
2506 2530 1.078426 CTAGCCCGGGTTGGTCTTG 60.078 63.158 24.63 7.25 35.15 3.02
2507 2531 1.838073 CTAGCCCGGGTTGGTCTTGT 61.838 60.000 24.63 0.00 35.15 3.16
2508 2532 1.420532 TAGCCCGGGTTGGTCTTGTT 61.421 55.000 24.63 0.00 35.15 2.83
2509 2533 1.830847 GCCCGGGTTGGTCTTGTTT 60.831 57.895 24.63 0.00 35.15 2.83
2510 2534 1.396607 GCCCGGGTTGGTCTTGTTTT 61.397 55.000 24.63 0.00 35.15 2.43
2511 2535 1.116308 CCCGGGTTGGTCTTGTTTTT 58.884 50.000 14.18 0.00 35.15 1.94
2535 2559 5.625921 TTTTAAATTAGGTGGCCGTGTAC 57.374 39.130 0.00 0.00 0.00 2.90
2536 2560 2.863132 AAATTAGGTGGCCGTGTACA 57.137 45.000 0.00 0.00 0.00 2.90
2537 2561 2.103537 AATTAGGTGGCCGTGTACAC 57.896 50.000 16.32 16.32 36.89 2.90
2549 2573 2.856091 GTGTACACGTCATTCAGTGC 57.144 50.000 10.84 0.00 41.72 4.40
2550 2574 2.404215 GTGTACACGTCATTCAGTGCT 58.596 47.619 10.84 0.00 41.72 4.40
2551 2575 3.571571 GTGTACACGTCATTCAGTGCTA 58.428 45.455 10.84 0.00 41.72 3.49
2552 2576 3.608506 GTGTACACGTCATTCAGTGCTAG 59.391 47.826 10.84 0.00 41.72 3.42
2553 2577 3.254903 TGTACACGTCATTCAGTGCTAGT 59.745 43.478 0.00 0.00 41.72 2.57
2554 2578 4.456566 TGTACACGTCATTCAGTGCTAGTA 59.543 41.667 0.00 0.00 41.72 1.82
2555 2579 4.098055 ACACGTCATTCAGTGCTAGTAG 57.902 45.455 0.00 0.00 41.72 2.57
2556 2580 3.756963 ACACGTCATTCAGTGCTAGTAGA 59.243 43.478 0.00 0.00 41.72 2.59
2557 2581 4.142578 ACACGTCATTCAGTGCTAGTAGAG 60.143 45.833 0.00 0.00 41.72 2.43
2558 2582 4.011023 ACGTCATTCAGTGCTAGTAGAGT 58.989 43.478 0.00 0.00 0.00 3.24
2559 2583 5.064834 CACGTCATTCAGTGCTAGTAGAGTA 59.935 44.000 0.00 0.00 0.00 2.59
2560 2584 5.064962 ACGTCATTCAGTGCTAGTAGAGTAC 59.935 44.000 0.00 0.00 40.87 2.73
2567 2591 4.426736 GTGCTAGTAGAGTACTCCCTCT 57.573 50.000 19.38 16.02 44.00 3.69
2568 2592 4.383173 GTGCTAGTAGAGTACTCCCTCTC 58.617 52.174 19.38 10.68 40.92 3.20
2569 2593 3.391955 TGCTAGTAGAGTACTCCCTCTCC 59.608 52.174 19.38 9.99 40.92 3.71
2570 2594 3.649502 GCTAGTAGAGTACTCCCTCTCCT 59.350 52.174 19.38 8.61 40.92 3.69
2571 2595 4.504340 GCTAGTAGAGTACTCCCTCTCCTG 60.504 54.167 19.38 9.75 40.92 3.86
2572 2596 3.466836 AGTAGAGTACTCCCTCTCCTGT 58.533 50.000 19.38 0.00 40.92 4.00
2573 2597 3.457012 AGTAGAGTACTCCCTCTCCTGTC 59.543 52.174 19.38 0.00 40.92 3.51
2574 2598 1.210967 AGAGTACTCCCTCTCCTGTCG 59.789 57.143 19.38 0.00 37.20 4.35
2575 2599 0.394625 AGTACTCCCTCTCCTGTCGC 60.395 60.000 0.00 0.00 0.00 5.19
2576 2600 0.394625 GTACTCCCTCTCCTGTCGCT 60.395 60.000 0.00 0.00 0.00 4.93
2577 2601 0.331954 TACTCCCTCTCCTGTCGCTT 59.668 55.000 0.00 0.00 0.00 4.68
2578 2602 1.254284 ACTCCCTCTCCTGTCGCTTG 61.254 60.000 0.00 0.00 0.00 4.01
2579 2603 1.228894 TCCCTCTCCTGTCGCTTGT 60.229 57.895 0.00 0.00 0.00 3.16
2580 2604 1.216710 CCCTCTCCTGTCGCTTGTC 59.783 63.158 0.00 0.00 0.00 3.18
2581 2605 1.216710 CCTCTCCTGTCGCTTGTCC 59.783 63.158 0.00 0.00 0.00 4.02
2582 2606 1.254284 CCTCTCCTGTCGCTTGTCCT 61.254 60.000 0.00 0.00 0.00 3.85
2602 2626 6.425721 TGTCCTATTGAGAAACAGTAAAACGG 59.574 38.462 0.00 0.00 0.00 4.44
2625 2649 2.124942 GCTACAGCCCTCCACAGC 60.125 66.667 0.00 0.00 34.31 4.40
2644 2668 0.027194 CGATTTGATGCTCACAGCCG 59.973 55.000 0.00 0.00 41.51 5.52
2669 2693 0.881796 TCACTCTCACCTACGCACAG 59.118 55.000 0.00 0.00 0.00 3.66
2681 2705 1.686355 ACGCACAGGATTTGTTTGGA 58.314 45.000 0.00 0.00 38.16 3.53
2711 2737 1.005748 GTTTTTGGGCTGCTGCTCC 60.006 57.895 13.44 13.60 39.40 4.70
2756 2782 1.292992 CGAATTGGGCCGTTAGGTAC 58.707 55.000 0.00 0.00 40.50 3.34
2778 2804 1.217942 AGGCCCAAGAGTTTTCCAGTT 59.782 47.619 0.00 0.00 0.00 3.16
2781 2807 2.294512 GCCCAAGAGTTTTCCAGTTGAG 59.705 50.000 0.00 0.00 0.00 3.02
2784 2810 2.614057 CAAGAGTTTTCCAGTTGAGCGT 59.386 45.455 0.00 0.00 0.00 5.07
2786 2812 3.654414 AGAGTTTTCCAGTTGAGCGTAG 58.346 45.455 0.00 0.00 0.00 3.51
2799 2825 0.747852 AGCGTAGAAAGCCTCCTAGC 59.252 55.000 0.00 0.00 34.64 3.42
2800 2826 0.249531 GCGTAGAAAGCCTCCTAGCC 60.250 60.000 0.00 0.00 0.00 3.93
2801 2827 1.404843 CGTAGAAAGCCTCCTAGCCT 58.595 55.000 0.00 0.00 0.00 4.58
2802 2828 1.067821 CGTAGAAAGCCTCCTAGCCTG 59.932 57.143 0.00 0.00 0.00 4.85
2810 2836 1.000052 GCCTCCTAGCCTGATTCGTAC 60.000 57.143 0.00 0.00 0.00 3.67
2827 2853 8.785946 TGATTCGTACGTTATCCATCTAACATA 58.214 33.333 16.05 0.00 32.27 2.29
2832 2858 6.971726 ACGTTATCCATCTAACATACCAGA 57.028 37.500 0.00 0.00 32.27 3.86
2845 2871 4.220724 ACATACCAGATCGCCTAACCTAA 58.779 43.478 0.00 0.00 0.00 2.69
2846 2872 4.652421 ACATACCAGATCGCCTAACCTAAA 59.348 41.667 0.00 0.00 0.00 1.85
2870 2897 0.739112 GAGCTGCTCCCTGTTCTTCG 60.739 60.000 18.80 0.00 0.00 3.79
2872 2899 1.743252 CTGCTCCCTGTTCTTCGGC 60.743 63.158 0.00 0.00 0.00 5.54
2926 2953 1.086696 GCTTCTATTGCTTGTCGGCA 58.913 50.000 0.00 0.00 40.74 5.69
3002 3029 2.918345 GCAATGTCGTGCCCTGCAA 61.918 57.895 0.00 0.00 41.47 4.08
3077 3104 0.392461 GCTGGACGATTAAGGCCACA 60.392 55.000 5.01 0.00 46.16 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.386606 GTGCTCACATACAAATTTGAACAAAAA 58.613 29.630 24.64 3.88 33.56 1.94
33 34 7.253917 CGTGCTCACATACAAATTTGAACAAAA 60.254 33.333 24.64 5.25 33.56 2.44
34 35 6.198029 CGTGCTCACATACAAATTTGAACAAA 59.802 34.615 24.64 2.48 34.46 2.83
35 36 5.685068 CGTGCTCACATACAAATTTGAACAA 59.315 36.000 24.64 7.36 0.00 2.83
36 37 5.211454 CGTGCTCACATACAAATTTGAACA 58.789 37.500 24.64 9.42 0.00 3.18
37 38 4.616802 CCGTGCTCACATACAAATTTGAAC 59.383 41.667 24.64 7.23 0.00 3.18
38 39 4.277174 ACCGTGCTCACATACAAATTTGAA 59.723 37.500 24.64 2.34 0.00 2.69
39 40 3.818210 ACCGTGCTCACATACAAATTTGA 59.182 39.130 24.64 8.78 0.00 2.69
40 41 4.159377 ACCGTGCTCACATACAAATTTG 57.841 40.909 16.67 16.67 0.00 2.32
41 42 4.545610 CAACCGTGCTCACATACAAATTT 58.454 39.130 0.69 0.00 0.00 1.82
42 43 3.057596 CCAACCGTGCTCACATACAAATT 60.058 43.478 0.69 0.00 0.00 1.82
43 44 2.487762 CCAACCGTGCTCACATACAAAT 59.512 45.455 0.69 0.00 0.00 2.32
44 45 1.876799 CCAACCGTGCTCACATACAAA 59.123 47.619 0.69 0.00 0.00 2.83
45 46 1.070914 TCCAACCGTGCTCACATACAA 59.929 47.619 0.69 0.00 0.00 2.41
46 47 0.682292 TCCAACCGTGCTCACATACA 59.318 50.000 0.69 0.00 0.00 2.29
47 48 1.665679 CATCCAACCGTGCTCACATAC 59.334 52.381 0.69 0.00 0.00 2.39
48 49 1.406751 CCATCCAACCGTGCTCACATA 60.407 52.381 0.69 0.00 0.00 2.29
49 50 0.677731 CCATCCAACCGTGCTCACAT 60.678 55.000 0.69 0.00 0.00 3.21
50 51 1.302431 CCATCCAACCGTGCTCACA 60.302 57.895 0.69 0.00 0.00 3.58
51 52 2.690778 GCCATCCAACCGTGCTCAC 61.691 63.158 0.00 0.00 0.00 3.51
52 53 2.359850 GCCATCCAACCGTGCTCA 60.360 61.111 0.00 0.00 0.00 4.26
53 54 3.134127 GGCCATCCAACCGTGCTC 61.134 66.667 0.00 0.00 0.00 4.26
60 61 4.115199 AGGAGCCGGCCATCCAAC 62.115 66.667 30.35 11.93 38.12 3.77
61 62 4.113815 CAGGAGCCGGCCATCCAA 62.114 66.667 30.35 0.00 38.12 3.53
62 63 3.993865 TACAGGAGCCGGCCATCCA 62.994 63.158 30.35 12.32 38.12 3.41
63 64 2.520536 ATACAGGAGCCGGCCATCC 61.521 63.158 26.15 24.80 35.71 3.51
64 65 1.302033 CATACAGGAGCCGGCCATC 60.302 63.158 26.15 15.79 0.00 3.51
65 66 1.762522 CTCATACAGGAGCCGGCCAT 61.763 60.000 26.15 9.90 0.00 4.40
66 67 2.364973 TCATACAGGAGCCGGCCA 60.365 61.111 26.15 1.31 0.00 5.36
67 68 2.423446 CTCATACAGGAGCCGGCC 59.577 66.667 26.15 15.07 0.00 6.13
68 69 1.227380 CACTCATACAGGAGCCGGC 60.227 63.158 21.89 21.89 38.50 6.13
69 70 0.103208 GTCACTCATACAGGAGCCGG 59.897 60.000 0.00 0.00 38.50 6.13
70 71 0.103208 GGTCACTCATACAGGAGCCG 59.897 60.000 0.00 0.00 38.50 5.52
71 72 0.103208 CGGTCACTCATACAGGAGCC 59.897 60.000 0.00 0.00 38.50 4.70
72 73 0.103208 CCGGTCACTCATACAGGAGC 59.897 60.000 0.00 0.00 38.50 4.70
73 74 1.405821 GTCCGGTCACTCATACAGGAG 59.594 57.143 0.00 0.00 41.07 3.69
74 75 1.272258 TGTCCGGTCACTCATACAGGA 60.272 52.381 0.00 0.00 38.64 3.86
75 76 1.182667 TGTCCGGTCACTCATACAGG 58.817 55.000 0.00 0.00 33.96 4.00
76 77 3.526931 AATGTCCGGTCACTCATACAG 57.473 47.619 2.72 0.00 0.00 2.74
77 78 4.021229 ACTAATGTCCGGTCACTCATACA 58.979 43.478 2.72 0.00 0.00 2.29
78 79 4.608951 GACTAATGTCCGGTCACTCATAC 58.391 47.826 2.72 0.00 37.24 2.39
79 80 4.913335 GACTAATGTCCGGTCACTCATA 57.087 45.455 2.72 0.00 37.24 2.15
80 81 3.802948 GACTAATGTCCGGTCACTCAT 57.197 47.619 2.72 0.00 37.24 2.90
91 92 5.047847 TGAAAATCGATCCGGACTAATGTC 58.952 41.667 6.12 0.00 42.22 3.06
92 93 5.018539 TGAAAATCGATCCGGACTAATGT 57.981 39.130 6.12 0.00 0.00 2.71
93 94 5.175856 GTCTGAAAATCGATCCGGACTAATG 59.824 44.000 6.12 0.00 0.00 1.90
94 95 5.163447 TGTCTGAAAATCGATCCGGACTAAT 60.163 40.000 23.17 0.00 0.00 1.73
95 96 4.158949 TGTCTGAAAATCGATCCGGACTAA 59.841 41.667 23.17 0.00 0.00 2.24
96 97 3.697542 TGTCTGAAAATCGATCCGGACTA 59.302 43.478 23.17 0.00 0.00 2.59
97 98 2.496070 TGTCTGAAAATCGATCCGGACT 59.504 45.455 23.17 0.00 0.00 3.85
98 99 2.888594 TGTCTGAAAATCGATCCGGAC 58.111 47.619 6.12 19.28 0.00 4.79
99 100 3.603158 TTGTCTGAAAATCGATCCGGA 57.397 42.857 6.61 6.61 0.00 5.14
100 101 4.882671 ATTTGTCTGAAAATCGATCCGG 57.117 40.909 0.00 0.00 0.00 5.14
101 102 7.177498 TGATATTTGTCTGAAAATCGATCCG 57.823 36.000 0.00 0.00 32.16 4.18
102 103 8.562892 ACATGATATTTGTCTGAAAATCGATCC 58.437 33.333 0.00 0.00 32.16 3.36
103 104 9.591404 GACATGATATTTGTCTGAAAATCGATC 57.409 33.333 0.00 0.00 40.26 3.69
115 116 7.303634 ACCGTAAACAGACATGATATTTGTC 57.696 36.000 0.00 10.30 43.05 3.18
116 117 6.315393 GGACCGTAAACAGACATGATATTTGT 59.685 38.462 0.00 0.00 0.00 2.83
117 118 6.509517 CGGACCGTAAACAGACATGATATTTG 60.510 42.308 5.48 0.00 0.00 2.32
118 119 5.522460 CGGACCGTAAACAGACATGATATTT 59.478 40.000 5.48 0.00 0.00 1.40
119 120 5.047847 CGGACCGTAAACAGACATGATATT 58.952 41.667 5.48 0.00 0.00 1.28
120 121 4.098960 ACGGACCGTAAACAGACATGATAT 59.901 41.667 20.23 0.00 38.73 1.63
121 122 3.444742 ACGGACCGTAAACAGACATGATA 59.555 43.478 20.23 0.00 38.73 2.15
122 123 2.232941 ACGGACCGTAAACAGACATGAT 59.767 45.455 20.23 0.00 38.73 2.45
123 124 1.614903 ACGGACCGTAAACAGACATGA 59.385 47.619 20.23 0.00 38.73 3.07
124 125 1.724623 CACGGACCGTAAACAGACATG 59.275 52.381 21.25 0.00 38.32 3.21
125 126 1.342174 ACACGGACCGTAAACAGACAT 59.658 47.619 21.25 0.00 38.32 3.06
126 127 0.746063 ACACGGACCGTAAACAGACA 59.254 50.000 21.25 0.00 38.32 3.41
127 128 1.523934 CAACACGGACCGTAAACAGAC 59.476 52.381 21.25 0.00 38.32 3.51
128 129 1.538634 CCAACACGGACCGTAAACAGA 60.539 52.381 21.25 0.00 38.32 3.41
129 130 0.863144 CCAACACGGACCGTAAACAG 59.137 55.000 21.25 9.62 38.32 3.16
130 131 0.463204 TCCAACACGGACCGTAAACA 59.537 50.000 21.25 0.00 39.64 2.83
131 132 1.142474 CTCCAACACGGACCGTAAAC 58.858 55.000 21.25 0.00 39.64 2.01
132 133 1.039068 TCTCCAACACGGACCGTAAA 58.961 50.000 21.25 2.60 39.64 2.01
133 134 1.067425 CATCTCCAACACGGACCGTAA 60.067 52.381 21.25 2.24 39.64 3.18
134 135 0.528924 CATCTCCAACACGGACCGTA 59.471 55.000 21.25 1.89 39.64 4.02
135 136 1.292223 CATCTCCAACACGGACCGT 59.708 57.895 15.37 15.37 39.64 4.83
136 137 2.100631 GCATCTCCAACACGGACCG 61.101 63.158 13.61 13.61 39.64 4.79
137 138 1.745489 GGCATCTCCAACACGGACC 60.745 63.158 0.00 0.00 39.64 4.46
138 139 1.745489 GGGCATCTCCAACACGGAC 60.745 63.158 0.00 0.00 39.64 4.79
139 140 2.668632 GGGCATCTCCAACACGGA 59.331 61.111 0.00 0.00 43.61 4.69
140 141 2.438434 GGGGCATCTCCAACACGG 60.438 66.667 0.00 0.00 36.21 4.94
141 142 2.438434 GGGGGCATCTCCAACACG 60.438 66.667 0.00 0.00 36.21 4.49
142 143 0.681243 GAAGGGGGCATCTCCAACAC 60.681 60.000 0.00 0.00 36.21 3.32
143 144 1.691219 GAAGGGGGCATCTCCAACA 59.309 57.895 0.00 0.00 36.21 3.33
144 145 1.076705 GGAAGGGGGCATCTCCAAC 60.077 63.158 0.00 0.00 36.21 3.77
145 146 1.230281 AGGAAGGGGGCATCTCCAA 60.230 57.895 0.00 0.00 36.21 3.53
146 147 2.002977 CAGGAAGGGGGCATCTCCA 61.003 63.158 0.00 0.00 36.21 3.86
147 148 1.575447 AACAGGAAGGGGGCATCTCC 61.575 60.000 0.00 0.00 0.00 3.71
148 149 0.394899 CAACAGGAAGGGGGCATCTC 60.395 60.000 0.00 0.00 0.00 2.75
149 150 1.693640 CAACAGGAAGGGGGCATCT 59.306 57.895 0.00 0.00 0.00 2.90
150 151 2.054453 GCAACAGGAAGGGGGCATC 61.054 63.158 0.00 0.00 0.00 3.91
151 152 2.037847 GCAACAGGAAGGGGGCAT 59.962 61.111 0.00 0.00 0.00 4.40
152 153 4.299796 GGCAACAGGAAGGGGGCA 62.300 66.667 0.00 0.00 0.00 5.36
154 155 3.589542 TGGGCAACAGGAAGGGGG 61.590 66.667 0.00 0.00 39.74 5.40
155 156 2.283173 GTGGGCAACAGGAAGGGG 60.283 66.667 0.00 0.00 39.74 4.79
156 157 2.119484 TACGTGGGCAACAGGAAGGG 62.119 60.000 0.00 0.00 38.32 3.95
157 158 0.250553 TTACGTGGGCAACAGGAAGG 60.251 55.000 0.00 0.00 38.32 3.46
158 159 1.265905 GTTTACGTGGGCAACAGGAAG 59.734 52.381 0.00 0.00 38.32 3.46
159 160 1.134037 AGTTTACGTGGGCAACAGGAA 60.134 47.619 0.00 0.00 38.32 3.36
160 161 0.470766 AGTTTACGTGGGCAACAGGA 59.529 50.000 0.00 0.00 38.32 3.86
161 162 0.591170 CAGTTTACGTGGGCAACAGG 59.409 55.000 0.00 0.00 40.69 4.00
162 163 0.591170 CCAGTTTACGTGGGCAACAG 59.409 55.000 0.00 0.00 39.74 3.16
163 164 0.180642 TCCAGTTTACGTGGGCAACA 59.819 50.000 0.00 0.00 35.58 3.33
164 165 1.467342 GATCCAGTTTACGTGGGCAAC 59.533 52.381 0.00 0.00 35.58 4.17
165 166 1.072489 TGATCCAGTTTACGTGGGCAA 59.928 47.619 0.00 0.00 35.58 4.52
166 167 0.687920 TGATCCAGTTTACGTGGGCA 59.312 50.000 0.00 0.00 35.58 5.36
167 168 1.816074 TTGATCCAGTTTACGTGGGC 58.184 50.000 0.00 0.00 35.58 5.36
168 169 3.871594 GAGATTGATCCAGTTTACGTGGG 59.128 47.826 0.00 0.00 35.58 4.61
169 170 4.759782 AGAGATTGATCCAGTTTACGTGG 58.240 43.478 0.00 0.00 36.28 4.94
170 171 5.655488 AGAGAGATTGATCCAGTTTACGTG 58.345 41.667 0.00 0.00 0.00 4.49
171 172 5.923733 AGAGAGATTGATCCAGTTTACGT 57.076 39.130 0.00 0.00 0.00 3.57
172 173 7.331934 TCAAAAGAGAGATTGATCCAGTTTACG 59.668 37.037 0.00 0.00 30.94 3.18
173 174 8.553459 TCAAAAGAGAGATTGATCCAGTTTAC 57.447 34.615 0.00 0.00 30.94 2.01
174 175 9.745018 ATTCAAAAGAGAGATTGATCCAGTTTA 57.255 29.630 0.00 0.00 35.63 2.01
175 176 8.647256 ATTCAAAAGAGAGATTGATCCAGTTT 57.353 30.769 0.00 0.00 35.63 2.66
176 177 8.521176 CAATTCAAAAGAGAGATTGATCCAGTT 58.479 33.333 0.00 0.00 35.63 3.16
177 178 7.886970 TCAATTCAAAAGAGAGATTGATCCAGT 59.113 33.333 0.00 0.00 35.63 4.00
178 179 8.277490 TCAATTCAAAAGAGAGATTGATCCAG 57.723 34.615 0.00 0.00 35.63 3.86
179 180 8.105197 TCTCAATTCAAAAGAGAGATTGATCCA 58.895 33.333 0.00 0.00 35.63 3.41
180 181 8.503458 TCTCAATTCAAAAGAGAGATTGATCC 57.497 34.615 0.00 0.00 35.63 3.36
182 183 9.682465 TGATCTCAATTCAAAAGAGAGATTGAT 57.318 29.630 0.00 0.00 43.84 2.57
183 184 9.511272 TTGATCTCAATTCAAAAGAGAGATTGA 57.489 29.630 0.00 0.00 43.84 2.57
257 258 4.832248 ACATTTAAGCGATCAACTCCTGA 58.168 39.130 0.00 0.00 38.81 3.86
262 263 7.498900 TGATCCAATACATTTAAGCGATCAACT 59.501 33.333 0.00 0.00 33.74 3.16
411 412 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
919 920 0.107508 AAGCTGCAGAGTGTGTGTGT 60.108 50.000 20.43 0.00 0.00 3.72
929 930 3.743521 AGTTTGATGTACAAGCTGCAGA 58.256 40.909 20.43 0.00 45.60 4.26
939 940 4.273148 AGGTGAGGTGAGTTTGATGTAC 57.727 45.455 0.00 0.00 0.00 2.90
953 954 3.597255 CATGCATAGCTGATAGGTGAGG 58.403 50.000 0.00 0.00 0.00 3.86
974 975 0.179158 TGAATGTGATGCATGCACGC 60.179 50.000 25.37 21.98 38.20 5.34
982 983 3.629058 GCATCTGATGTGAATGTGATGC 58.371 45.455 18.19 9.46 45.97 3.91
983 984 4.789802 GCTGCATCTGATGTGAATGTGATG 60.790 45.833 18.19 0.00 35.69 3.07
984 985 3.315470 GCTGCATCTGATGTGAATGTGAT 59.685 43.478 18.19 0.00 0.00 3.06
999 1004 1.207593 GTGTCGTTGGTGCTGCATC 59.792 57.895 5.27 5.56 0.00 3.91
1010 1015 2.846193 AGGTAAGCATGTTGTGTCGTT 58.154 42.857 0.00 0.00 0.00 3.85
1025 1030 1.468127 TCGTACGCATGTCGAAGGTAA 59.532 47.619 11.24 0.00 41.67 2.85
1026 1031 1.063027 CTCGTACGCATGTCGAAGGTA 59.937 52.381 11.24 0.00 41.67 3.08
1027 1032 0.179171 CTCGTACGCATGTCGAAGGT 60.179 55.000 11.24 0.00 41.67 3.50
1028 1033 1.472276 GCTCGTACGCATGTCGAAGG 61.472 60.000 11.24 4.93 41.67 3.46
1029 1034 0.796870 TGCTCGTACGCATGTCGAAG 60.797 55.000 11.24 0.82 41.67 3.79
1030 1035 1.210672 TGCTCGTACGCATGTCGAA 59.789 52.632 11.24 0.00 41.67 3.71
1031 1036 2.871828 TGCTCGTACGCATGTCGA 59.128 55.556 11.24 9.52 41.67 4.20
1037 1042 2.356695 ACATAGTACATGCTCGTACGCA 59.643 45.455 11.24 3.85 45.25 5.24
1038 1043 2.996155 ACATAGTACATGCTCGTACGC 58.004 47.619 11.24 0.00 45.25 4.42
1039 1044 4.845387 AGAACATAGTACATGCTCGTACG 58.155 43.478 9.53 9.53 45.25 3.67
1055 1060 1.405256 CGAGCTGCAGGAGAAGAACAT 60.405 52.381 17.12 0.00 0.00 2.71
1116 1124 0.171903 CGTAGTAACCCACGTCCAGG 59.828 60.000 0.00 0.00 33.56 4.45
1125 1133 2.580597 GTCGCGGCGTAGTAACCC 60.581 66.667 22.90 0.00 0.00 4.11
1284 1295 2.028130 ACGTAGAGCTTGAGATGGAGG 58.972 52.381 0.00 0.00 0.00 4.30
1285 1296 2.797792 GCACGTAGAGCTTGAGATGGAG 60.798 54.545 0.00 0.00 41.95 3.86
1305 1316 0.722469 CGATCACAAGTTGCACACGC 60.722 55.000 1.81 0.00 39.24 5.34
1308 1319 1.225855 GACCGATCACAAGTTGCACA 58.774 50.000 1.81 0.00 0.00 4.57
1317 1328 0.392729 TGCATGCATGACCGATCACA 60.393 50.000 30.64 12.71 37.79 3.58
1325 1348 0.956633 CCCCTGTATGCATGCATGAC 59.043 55.000 37.43 28.86 37.82 3.06
1881 1904 0.940126 CAATCATCTGGCCGTAGCAC 59.060 55.000 0.00 0.00 42.56 4.40
1968 1991 4.587189 GGGCTGGCCGCGTAGTAG 62.587 72.222 3.84 0.00 40.44 2.57
2107 2130 3.989698 CTTGATCGACTGGCCGCGT 62.990 63.158 4.92 4.84 0.00 6.01
2121 2144 3.795688 ATTTCTCTGCCAGGAACTTGA 57.204 42.857 0.00 0.00 34.60 3.02
2132 2155 3.604582 ACTACTCCAGCAATTTCTCTGC 58.395 45.455 0.00 0.00 40.24 4.26
2156 2179 8.146479 TCGAATCGCTTTATCTACTACTGTAA 57.854 34.615 0.00 0.00 0.00 2.41
2158 2181 6.615264 TCGAATCGCTTTATCTACTACTGT 57.385 37.500 0.00 0.00 0.00 3.55
2198 2222 5.069501 ACCACTACGATCTAACCAAGAAC 57.930 43.478 0.00 0.00 37.89 3.01
2234 2258 7.926555 CCTGACTCACTTGACTAGTTTCTTTAA 59.073 37.037 0.00 0.00 33.85 1.52
2237 2261 5.364157 ACCTGACTCACTTGACTAGTTTCTT 59.636 40.000 0.00 0.00 33.85 2.52
2241 2265 3.253677 CGACCTGACTCACTTGACTAGTT 59.746 47.826 0.00 0.00 33.85 2.24
2242 2266 2.814919 CGACCTGACTCACTTGACTAGT 59.185 50.000 0.00 0.00 37.68 2.57
2243 2267 3.075148 TCGACCTGACTCACTTGACTAG 58.925 50.000 0.00 0.00 0.00 2.57
2244 2268 3.136009 TCGACCTGACTCACTTGACTA 57.864 47.619 0.00 0.00 0.00 2.59
2245 2269 1.982660 TCGACCTGACTCACTTGACT 58.017 50.000 0.00 0.00 0.00 3.41
2246 2270 2.229062 TCATCGACCTGACTCACTTGAC 59.771 50.000 0.00 0.00 0.00 3.18
2247 2271 2.514803 TCATCGACCTGACTCACTTGA 58.485 47.619 0.00 0.00 0.00 3.02
2248 2272 3.185330 CATCATCGACCTGACTCACTTG 58.815 50.000 0.00 0.00 0.00 3.16
2249 2273 2.828520 ACATCATCGACCTGACTCACTT 59.171 45.455 0.00 0.00 0.00 3.16
2250 2274 2.451490 ACATCATCGACCTGACTCACT 58.549 47.619 0.00 0.00 0.00 3.41
2251 2275 2.949451 ACATCATCGACCTGACTCAC 57.051 50.000 0.00 0.00 0.00 3.51
2252 2276 4.017126 AGTTACATCATCGACCTGACTCA 58.983 43.478 0.00 0.00 0.00 3.41
2253 2277 4.640789 AGTTACATCATCGACCTGACTC 57.359 45.455 0.00 0.00 0.00 3.36
2254 2278 4.220821 ACAAGTTACATCATCGACCTGACT 59.779 41.667 0.00 0.00 0.00 3.41
2255 2279 4.327357 CACAAGTTACATCATCGACCTGAC 59.673 45.833 0.00 0.00 0.00 3.51
2256 2280 4.219725 TCACAAGTTACATCATCGACCTGA 59.780 41.667 0.00 0.00 0.00 3.86
2257 2281 4.494484 TCACAAGTTACATCATCGACCTG 58.506 43.478 0.00 0.00 0.00 4.00
2258 2282 4.801330 TCACAAGTTACATCATCGACCT 57.199 40.909 0.00 0.00 0.00 3.85
2259 2283 5.856126 TTTCACAAGTTACATCATCGACC 57.144 39.130 0.00 0.00 0.00 4.79
2260 2284 6.831769 ACATTTCACAAGTTACATCATCGAC 58.168 36.000 0.00 0.00 0.00 4.20
2261 2285 7.433708 AACATTTCACAAGTTACATCATCGA 57.566 32.000 0.00 0.00 0.00 3.59
2262 2286 9.051027 GTTAACATTTCACAAGTTACATCATCG 57.949 33.333 0.00 0.00 0.00 3.84
2263 2287 9.891828 TGTTAACATTTCACAAGTTACATCATC 57.108 29.630 3.59 0.00 0.00 2.92
2265 2289 9.891828 GATGTTAACATTTCACAAGTTACATCA 57.108 29.630 21.63 0.00 36.93 3.07
2268 2292 8.279800 CGAGATGTTAACATTTCACAAGTTACA 58.720 33.333 28.63 0.00 37.33 2.41
2269 2293 7.744715 CCGAGATGTTAACATTTCACAAGTTAC 59.255 37.037 28.63 11.83 37.33 2.50
2270 2294 7.658167 TCCGAGATGTTAACATTTCACAAGTTA 59.342 33.333 28.63 10.47 37.33 2.24
2289 2313 3.563223 TCCGTAATCCTTTCTCCGAGAT 58.437 45.455 0.00 0.00 0.00 2.75
2294 2318 3.477210 AGCATCCGTAATCCTTTCTCC 57.523 47.619 0.00 0.00 0.00 3.71
2303 2327 1.396996 GCGACAACAAGCATCCGTAAT 59.603 47.619 0.00 0.00 0.00 1.89
2307 2331 2.096406 CGCGACAACAAGCATCCG 59.904 61.111 0.00 0.00 0.00 4.18
2342 2366 3.323403 CCACCCAATTTCAGTTGCCTTAA 59.677 43.478 0.00 0.00 0.00 1.85
2343 2367 2.896685 CCACCCAATTTCAGTTGCCTTA 59.103 45.455 0.00 0.00 0.00 2.69
2344 2368 1.693606 CCACCCAATTTCAGTTGCCTT 59.306 47.619 0.00 0.00 0.00 4.35
2345 2369 1.341080 CCACCCAATTTCAGTTGCCT 58.659 50.000 0.00 0.00 0.00 4.75
2346 2370 0.320683 GCCACCCAATTTCAGTTGCC 60.321 55.000 0.00 0.00 0.00 4.52
2347 2371 0.320683 GGCCACCCAATTTCAGTTGC 60.321 55.000 0.00 0.00 0.00 4.17
2348 2372 0.038343 CGGCCACCCAATTTCAGTTG 60.038 55.000 2.24 0.00 0.00 3.16
2349 2373 1.815817 GCGGCCACCCAATTTCAGTT 61.816 55.000 2.24 0.00 0.00 3.16
2350 2374 2.275380 GCGGCCACCCAATTTCAGT 61.275 57.895 2.24 0.00 0.00 3.41
2351 2375 2.573340 GCGGCCACCCAATTTCAG 59.427 61.111 2.24 0.00 0.00 3.02
2352 2376 3.369400 CGCGGCCACCCAATTTCA 61.369 61.111 2.24 0.00 0.00 2.69
2353 2377 3.051392 CTCGCGGCCACCCAATTTC 62.051 63.158 6.13 0.00 0.00 2.17
2354 2378 3.061848 CTCGCGGCCACCCAATTT 61.062 61.111 6.13 0.00 0.00 1.82
2355 2379 3.561120 TTCTCGCGGCCACCCAATT 62.561 57.895 6.13 0.00 0.00 2.32
2356 2380 4.028490 TTCTCGCGGCCACCCAAT 62.028 61.111 6.13 0.00 0.00 3.16
2360 2384 4.373116 TCAGTTCTCGCGGCCACC 62.373 66.667 6.13 0.00 0.00 4.61
2361 2385 2.811317 CTCAGTTCTCGCGGCCAC 60.811 66.667 6.13 0.00 0.00 5.01
2362 2386 4.742201 GCTCAGTTCTCGCGGCCA 62.742 66.667 6.13 0.00 0.00 5.36
2363 2387 2.945398 CTAGCTCAGTTCTCGCGGCC 62.945 65.000 6.13 0.00 0.00 6.13
2364 2388 1.587613 CTAGCTCAGTTCTCGCGGC 60.588 63.158 6.13 0.00 0.00 6.53
2365 2389 0.171455 AACTAGCTCAGTTCTCGCGG 59.829 55.000 6.13 0.00 44.48 6.46
2366 2390 1.263776 CAACTAGCTCAGTTCTCGCG 58.736 55.000 0.00 0.00 44.48 5.87
2367 2391 1.634702 CCAACTAGCTCAGTTCTCGC 58.365 55.000 0.00 0.00 44.48 5.03
2368 2392 1.067565 TGCCAACTAGCTCAGTTCTCG 60.068 52.381 0.00 0.00 44.48 4.04
2369 2393 2.751166 TGCCAACTAGCTCAGTTCTC 57.249 50.000 0.00 0.00 44.48 2.87
2370 2394 2.289945 CCTTGCCAACTAGCTCAGTTCT 60.290 50.000 0.00 0.00 44.48 3.01
2371 2395 2.079925 CCTTGCCAACTAGCTCAGTTC 58.920 52.381 0.00 0.00 44.48 3.01
2373 2397 1.059913 ACCTTGCCAACTAGCTCAGT 58.940 50.000 0.00 0.00 40.05 3.41
2374 2398 1.808945 CAACCTTGCCAACTAGCTCAG 59.191 52.381 0.00 0.00 0.00 3.35
2375 2399 1.545428 CCAACCTTGCCAACTAGCTCA 60.545 52.381 0.00 0.00 0.00 4.26
2376 2400 1.168714 CCAACCTTGCCAACTAGCTC 58.831 55.000 0.00 0.00 0.00 4.09
2377 2401 0.251341 CCCAACCTTGCCAACTAGCT 60.251 55.000 0.00 0.00 0.00 3.32
2378 2402 0.251165 TCCCAACCTTGCCAACTAGC 60.251 55.000 0.00 0.00 0.00 3.42
2379 2403 1.073923 ACTCCCAACCTTGCCAACTAG 59.926 52.381 0.00 0.00 0.00 2.57
2380 2404 1.145571 ACTCCCAACCTTGCCAACTA 58.854 50.000 0.00 0.00 0.00 2.24
2381 2405 0.261696 AACTCCCAACCTTGCCAACT 59.738 50.000 0.00 0.00 0.00 3.16
2382 2406 0.673985 GAACTCCCAACCTTGCCAAC 59.326 55.000 0.00 0.00 0.00 3.77
2383 2407 0.821711 CGAACTCCCAACCTTGCCAA 60.822 55.000 0.00 0.00 0.00 4.52
2384 2408 1.228124 CGAACTCCCAACCTTGCCA 60.228 57.895 0.00 0.00 0.00 4.92
2385 2409 0.035739 TACGAACTCCCAACCTTGCC 59.964 55.000 0.00 0.00 0.00 4.52
2386 2410 1.439679 CTACGAACTCCCAACCTTGC 58.560 55.000 0.00 0.00 0.00 4.01
2387 2411 1.439679 GCTACGAACTCCCAACCTTG 58.560 55.000 0.00 0.00 0.00 3.61
2388 2412 0.323957 GGCTACGAACTCCCAACCTT 59.676 55.000 0.00 0.00 0.00 3.50
2389 2413 0.834687 TGGCTACGAACTCCCAACCT 60.835 55.000 0.00 0.00 0.00 3.50
2390 2414 0.391263 CTGGCTACGAACTCCCAACC 60.391 60.000 0.00 0.00 0.00 3.77
2391 2415 1.019805 GCTGGCTACGAACTCCCAAC 61.020 60.000 0.00 0.00 0.00 3.77
2392 2416 1.295423 GCTGGCTACGAACTCCCAA 59.705 57.895 0.00 0.00 0.00 4.12
2393 2417 2.656069 GGCTGGCTACGAACTCCCA 61.656 63.158 0.00 0.00 0.00 4.37
2394 2418 2.187163 GGCTGGCTACGAACTCCC 59.813 66.667 0.00 0.00 0.00 4.30
2395 2419 2.187163 GGGCTGGCTACGAACTCC 59.813 66.667 0.00 0.00 0.00 3.85
2396 2420 1.448013 GTGGGCTGGCTACGAACTC 60.448 63.158 1.27 0.00 0.00 3.01
2397 2421 2.663196 GTGGGCTGGCTACGAACT 59.337 61.111 1.27 0.00 0.00 3.01
2398 2422 2.436115 GGTGGGCTGGCTACGAAC 60.436 66.667 11.39 0.00 0.00 3.95
2399 2423 2.925706 TGGTGGGCTGGCTACGAA 60.926 61.111 11.39 0.00 0.00 3.85
2400 2424 3.390521 CTGGTGGGCTGGCTACGA 61.391 66.667 11.39 6.93 0.00 3.43
2401 2425 4.473520 CCTGGTGGGCTGGCTACG 62.474 72.222 11.39 0.00 0.00 3.51
2411 2435 0.764890 TGAGACTTGAACCCTGGTGG 59.235 55.000 0.00 0.00 41.37 4.61
2412 2436 1.879796 GCTGAGACTTGAACCCTGGTG 60.880 57.143 0.00 0.00 0.00 4.17
2413 2437 0.398318 GCTGAGACTTGAACCCTGGT 59.602 55.000 0.00 0.00 0.00 4.00
2414 2438 0.689623 AGCTGAGACTTGAACCCTGG 59.310 55.000 0.00 0.00 0.00 4.45
2415 2439 2.557920 AAGCTGAGACTTGAACCCTG 57.442 50.000 0.00 0.00 0.00 4.45
2427 2451 0.236711 CACCAAACGCTCAAGCTGAG 59.763 55.000 8.34 8.34 46.90 3.35
2428 2452 1.785041 GCACCAAACGCTCAAGCTGA 61.785 55.000 0.00 0.00 39.32 4.26
2429 2453 1.370900 GCACCAAACGCTCAAGCTG 60.371 57.895 0.00 0.00 39.32 4.24
2430 2454 1.526917 AGCACCAAACGCTCAAGCT 60.527 52.632 0.00 0.00 33.35 3.74
2431 2455 3.034030 AGCACCAAACGCTCAAGC 58.966 55.556 0.00 0.00 33.35 4.01
2436 2460 2.972505 CCGTGAGCACCAAACGCT 60.973 61.111 0.00 0.00 44.10 5.07
2437 2461 2.954753 CTCCGTGAGCACCAAACGC 61.955 63.158 0.00 0.00 36.02 4.84
2438 2462 1.157870 AACTCCGTGAGCACCAAACG 61.158 55.000 1.36 0.00 37.07 3.60
2439 2463 1.021968 AAACTCCGTGAGCACCAAAC 58.978 50.000 1.36 0.00 32.04 2.93
2440 2464 1.757682 AAAACTCCGTGAGCACCAAA 58.242 45.000 1.36 0.00 32.04 3.28
2441 2465 1.757682 AAAAACTCCGTGAGCACCAA 58.242 45.000 1.36 0.00 32.04 3.67
2442 2466 3.487576 AAAAACTCCGTGAGCACCA 57.512 47.368 1.36 0.00 32.04 4.17
2468 2492 6.259550 CTAGACTAGCTTGTTGGCATTTTT 57.740 37.500 1.43 0.00 34.17 1.94
2469 2493 5.886960 CTAGACTAGCTTGTTGGCATTTT 57.113 39.130 1.43 0.00 34.17 1.82
2483 2507 0.686769 ACCAACCCGGGCTAGACTAG 60.687 60.000 24.08 5.03 40.22 2.57
2484 2508 0.685458 GACCAACCCGGGCTAGACTA 60.685 60.000 24.08 0.00 41.26 2.59
2485 2509 1.988406 GACCAACCCGGGCTAGACT 60.988 63.158 24.08 0.00 41.26 3.24
2486 2510 2.582978 GACCAACCCGGGCTAGAC 59.417 66.667 24.08 5.60 41.26 2.59
2492 2516 1.116308 AAAAACAAGACCAACCCGGG 58.884 50.000 22.25 22.25 40.22 5.73
2512 2536 5.533903 TGTACACGGCCACCTAATTTAAAAA 59.466 36.000 2.24 0.00 0.00 1.94
2513 2537 5.048852 GTGTACACGGCCACCTAATTTAAAA 60.049 40.000 10.84 0.00 0.00 1.52
2514 2538 4.455190 GTGTACACGGCCACCTAATTTAAA 59.545 41.667 10.84 0.00 0.00 1.52
2515 2539 4.002316 GTGTACACGGCCACCTAATTTAA 58.998 43.478 10.84 0.00 0.00 1.52
2516 2540 3.598299 GTGTACACGGCCACCTAATTTA 58.402 45.455 10.84 0.00 0.00 1.40
2517 2541 2.429478 GTGTACACGGCCACCTAATTT 58.571 47.619 10.84 0.00 0.00 1.82
2518 2542 2.103537 GTGTACACGGCCACCTAATT 57.896 50.000 10.84 0.00 0.00 1.40
2519 2543 3.846955 GTGTACACGGCCACCTAAT 57.153 52.632 10.84 0.00 0.00 1.73
2530 2554 2.404215 AGCACTGAATGACGTGTACAC 58.596 47.619 16.32 16.32 33.78 2.90
2531 2555 2.812358 AGCACTGAATGACGTGTACA 57.188 45.000 0.00 0.00 33.78 2.90
2532 2556 3.834610 ACTAGCACTGAATGACGTGTAC 58.165 45.455 0.00 0.00 33.78 2.90
2533 2557 4.939439 TCTACTAGCACTGAATGACGTGTA 59.061 41.667 0.00 0.00 33.78 2.90
2534 2558 3.756963 TCTACTAGCACTGAATGACGTGT 59.243 43.478 0.00 0.00 33.78 4.49
2535 2559 4.142578 ACTCTACTAGCACTGAATGACGTG 60.143 45.833 0.00 0.00 0.00 4.49
2536 2560 4.011023 ACTCTACTAGCACTGAATGACGT 58.989 43.478 0.00 0.00 0.00 4.34
2537 2561 4.624336 ACTCTACTAGCACTGAATGACG 57.376 45.455 0.00 0.00 0.00 4.35
2538 2562 6.238538 GGAGTACTCTACTAGCACTGAATGAC 60.239 46.154 21.88 0.00 39.59 3.06
2539 2563 5.823570 GGAGTACTCTACTAGCACTGAATGA 59.176 44.000 21.88 0.00 39.59 2.57
2540 2564 5.009210 GGGAGTACTCTACTAGCACTGAATG 59.991 48.000 21.88 0.00 39.59 2.67
2541 2565 5.103855 AGGGAGTACTCTACTAGCACTGAAT 60.104 44.000 21.88 0.00 39.59 2.57
2542 2566 4.227754 AGGGAGTACTCTACTAGCACTGAA 59.772 45.833 21.88 0.00 39.59 3.02
2543 2567 3.781407 AGGGAGTACTCTACTAGCACTGA 59.219 47.826 21.88 0.00 39.59 3.41
2544 2568 4.131596 GAGGGAGTACTCTACTAGCACTG 58.868 52.174 21.88 0.00 39.59 3.66
2545 2569 4.042174 AGAGGGAGTACTCTACTAGCACT 58.958 47.826 21.88 10.78 45.62 4.40
2546 2570 4.426736 AGAGGGAGTACTCTACTAGCAC 57.573 50.000 21.88 8.97 45.62 4.40
2555 2579 1.670791 CGACAGGAGAGGGAGTACTC 58.329 60.000 14.87 14.87 37.77 2.59
2556 2580 0.394625 GCGACAGGAGAGGGAGTACT 60.395 60.000 0.00 0.00 0.00 2.73
2557 2581 0.394625 AGCGACAGGAGAGGGAGTAC 60.395 60.000 0.00 0.00 0.00 2.73
2558 2582 0.331954 AAGCGACAGGAGAGGGAGTA 59.668 55.000 0.00 0.00 0.00 2.59
2559 2583 1.077625 AAGCGACAGGAGAGGGAGT 59.922 57.895 0.00 0.00 0.00 3.85
2560 2584 1.254284 ACAAGCGACAGGAGAGGGAG 61.254 60.000 0.00 0.00 0.00 4.30
2561 2585 1.228894 ACAAGCGACAGGAGAGGGA 60.229 57.895 0.00 0.00 0.00 4.20
2562 2586 1.216710 GACAAGCGACAGGAGAGGG 59.783 63.158 0.00 0.00 0.00 4.30
2563 2587 1.216710 GGACAAGCGACAGGAGAGG 59.783 63.158 0.00 0.00 0.00 3.69
2564 2588 1.464734 TAGGACAAGCGACAGGAGAG 58.535 55.000 0.00 0.00 0.00 3.20
2565 2589 2.145397 ATAGGACAAGCGACAGGAGA 57.855 50.000 0.00 0.00 0.00 3.71
2566 2590 2.166459 TCAATAGGACAAGCGACAGGAG 59.834 50.000 0.00 0.00 0.00 3.69
2567 2591 2.166459 CTCAATAGGACAAGCGACAGGA 59.834 50.000 0.00 0.00 0.00 3.86
2568 2592 2.166459 TCTCAATAGGACAAGCGACAGG 59.834 50.000 0.00 0.00 0.00 4.00
2569 2593 3.510388 TCTCAATAGGACAAGCGACAG 57.490 47.619 0.00 0.00 0.00 3.51
2570 2594 3.953712 TTCTCAATAGGACAAGCGACA 57.046 42.857 0.00 0.00 0.00 4.35
2571 2595 3.994392 TGTTTCTCAATAGGACAAGCGAC 59.006 43.478 0.00 0.00 0.00 5.19
2572 2596 4.245660 CTGTTTCTCAATAGGACAAGCGA 58.754 43.478 0.00 0.00 0.00 4.93
2573 2597 3.997021 ACTGTTTCTCAATAGGACAAGCG 59.003 43.478 0.00 0.00 0.00 4.68
2574 2598 7.435068 TTTACTGTTTCTCAATAGGACAAGC 57.565 36.000 0.00 0.00 0.00 4.01
2575 2599 8.009974 CGTTTTACTGTTTCTCAATAGGACAAG 58.990 37.037 0.00 0.00 0.00 3.16
2576 2600 7.041644 CCGTTTTACTGTTTCTCAATAGGACAA 60.042 37.037 0.00 0.00 0.00 3.18
2577 2601 6.425721 CCGTTTTACTGTTTCTCAATAGGACA 59.574 38.462 0.00 0.00 0.00 4.02
2578 2602 6.128363 CCCGTTTTACTGTTTCTCAATAGGAC 60.128 42.308 0.00 0.00 0.00 3.85
2579 2603 5.935789 CCCGTTTTACTGTTTCTCAATAGGA 59.064 40.000 0.00 0.00 0.00 2.94
2580 2604 5.123344 CCCCGTTTTACTGTTTCTCAATAGG 59.877 44.000 0.00 0.00 0.00 2.57
2581 2605 5.391629 GCCCCGTTTTACTGTTTCTCAATAG 60.392 44.000 0.00 0.00 0.00 1.73
2582 2606 4.456566 GCCCCGTTTTACTGTTTCTCAATA 59.543 41.667 0.00 0.00 0.00 1.90
2644 2668 1.331138 CGTAGGTGAGAGTGATCCGAC 59.669 57.143 0.00 0.00 0.00 4.79
2669 2693 1.068541 GCTGGACGTCCAAACAAATCC 60.069 52.381 35.36 13.80 46.97 3.01
2711 2737 0.171007 TTAGCGTAACTCGTTCCCCG 59.829 55.000 0.00 0.00 42.13 5.73
2756 2782 1.615392 CTGGAAAACTCTTGGGCCTTG 59.385 52.381 4.53 0.00 0.00 3.61
2778 2804 2.025155 CTAGGAGGCTTTCTACGCTCA 58.975 52.381 0.00 0.00 0.00 4.26
2781 2807 0.249531 GGCTAGGAGGCTTTCTACGC 60.250 60.000 0.00 0.96 37.85 4.42
2799 2825 5.122512 AGATGGATAACGTACGAATCAGG 57.877 43.478 24.41 0.00 0.00 3.86
2800 2826 7.136772 TGTTAGATGGATAACGTACGAATCAG 58.863 38.462 24.41 0.00 38.28 2.90
2801 2827 7.030075 TGTTAGATGGATAACGTACGAATCA 57.970 36.000 24.41 12.38 38.28 2.57
2802 2828 9.059485 GTATGTTAGATGGATAACGTACGAATC 57.941 37.037 24.41 21.61 43.16 2.52
2810 2836 6.747739 CGATCTGGTATGTTAGATGGATAACG 59.252 42.308 0.00 0.00 38.28 3.18
2827 2853 2.169978 GGTTTAGGTTAGGCGATCTGGT 59.830 50.000 0.00 0.00 0.00 4.00
2832 2858 2.361438 CTCGAGGTTTAGGTTAGGCGAT 59.639 50.000 3.91 0.00 0.00 4.58
2845 2871 2.284258 AGGGAGCAGCTCGAGGTT 60.284 61.111 15.83 0.41 0.00 3.50
2846 2872 3.073735 CAGGGAGCAGCTCGAGGT 61.074 66.667 16.47 12.24 0.00 3.85
2899 2926 2.173669 GCAATAGAAGCTCGCCGCA 61.174 57.895 0.00 0.00 42.61 5.69
2968 2995 0.036388 TTGCGAAGATGAGACCCACC 60.036 55.000 0.00 0.00 0.00 4.61
3002 3029 1.882352 GCAACCTCCATGGAAGAACGT 60.882 52.381 17.55 4.96 39.71 3.99
3077 3104 0.591170 GTTGGCATGCACTTACACGT 59.409 50.000 21.36 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.