>input_sequence_60752
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--------------------------------------------ATGCAGCACCAACGACACAACATGCTTACCTTCGAC
ATGCGTACGAGCATGTACTATGTTCTTCTCCTGCAGCTCGTGCTCGCGGGCGCCATTGCCCGCCGCGGCGTCGT---CGG
AGCCCTGGACGTGGGTTACTACGCCGCGACGTGCCCGGACGCCGCGGCGACGGTGCGGCAGGCCATGGAGCTGCAGTTCT
ACAACGACCGCACCATCGCCCCCGCCATCATCCGCATGCTCTTCCACGACTGCTTCGTCAGGGTAC---GTACGTGCCAC
GGTCCATGGCCGCCCCTCCATCTCAAGCTCTACGTGCGTGTGCAACTT------------GTGATCGGTCATGCATGCAT
ACAGGGGTGCGACGCGTCGGTGATGATCGTGCCGGCGGCGGGGCGGTCGTCGGAGCGGGTGGCGATCCCGAACCAGACGC
TGCGCGGCTTCAACATCGTCAACCGGGTCAAGAAGGCCCTGGAGTCGGCCTGCCCGGGCGTGGTCTCCTGCGCCGACACG
CTGGCGCTCATGGCGCGGGACTCCGTCGCCCTCCTCGGCGGCGCCGCCTACGACGTCCCGCTCGGCCGCCGCGACGGGCT
GCAGTCCAACCCCTGGGAGGTGGACCTGCCGGCCCCCTTCGCGCGCCTCGACGACGCGCTCCGCTCCTTCGCCGCCAGGG
GCTTCTCGGCGGAGGAGACGGTGGTGCTCTTCGGCGCCCACACCGTCGGCGCCACGCGCTGCTCCCACTTCCGCTACCGC
CTCGCGCACCCGGACGGCACCATGGACGAGGCGCTCCGGCGCGACATGGCCGAGGCGTGCGGCCTCGCCGGCGGCGACCT
GCCGCCGGACGACGACCCCACCGCGTTCCTCGACCCGGACACGCCGTTCGCCATCGACAACGCGTGCTACGGCCAGATGA
TTGGCAACCGGAGCCTCCTGCAGCTGGACCAGGAGGCCGCCACGCACCCCGCCACGGCCGGCCACGTCGGCTACTACGCG
GCCAGCCCCGACGCGTTCGTGCGGCGGTTCTCGGAGGCCATGGCCAAGCTGGCGGCCGTGGGCGTGCTCGAGGGGGACGC
CGGCGAGGTCAGGAAGGTGTGCAGCGCGTACAACAAATGA----------------------------------------
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>chr2D_1_TraesCS2D01G036700
TCTTTTCTTTTTTTAAGTGCTCACACTATAATTTTTTGTTCAAATTTGTATGTGAGCACGGTTGGATGGCCGGCTCCTGT
ATGAGTGACCGGACATTAGTCCGGATCGATTTTCAGACAAATATCATGTCTGTTTACGGTCCGTGTTGGAGATGCCCCCT
TCCTGTTGCCCACGTAAACTGGATCAATCTCTCTTTTGAATTGAGATCAATATACAGGTGGGAATTCCTTCCCTGGTGAG
TGATTAAAGAAAAACATTCAGGAGTTGATCGCTTAAATGTATTGGATCAACACCTGGGCCAGATCTGCAAACACATGAAT
GTGGCGGTTGCCGACCTGCCCTGCTCTGCCCTAGATACGTTCGTCTCGCACACAGAGTCAACACGCGCAAACAAAGTCAA
CACTCAACACACACACACACACACACACACACACACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACACACACTCTGCAGCTTGTACATCAAACTCACCTCACC
TATCAGCTATGCATGCGTGCATGCA----TCACATTCACATCAGATGCAGCACCAACGACACAACATGCTTACCTTCGAC
ATGCGTACGAGCATGTACTATGTTCTTCTCCTGCAGCTCGTGCTCGCGGGCGCCATTGCCCGCCGCGGCGTCGT---CGG
AGCCCTGGACGTGGGTTACTACGCCGCGACGTGCCCGGACGCCGCGGCGACGGTGCGGCAGGCCATGGAGCTGCAGTTCT
ACAACGACCGCACCATCGCCCCCGCCATCATCCGCATGCTCTTCCACGACTGCTTCGTCAGGGTAC---GTACGTGCCAC
GGTCCATGGCCGCCCCTCCATCTCAAGCTCTACGTGCGTGTGCAACTT------------GTGATCGGTCATGCATGCAT
ACAGGGGTGCGACGCGTCGGTGATGATCGTGCCGGCGGCGGGGCGGTCGTCGGAGCGGGTGGCGATCCCGAACCAGACGC
TGCGCGGCTTCAACATCGTCAACCGGGTCAAGAAGGCCCTGGAGTCGGCCTGCCCGGGCGTGGTCTCCTGCGCCGACACG
CTGGCGCTCATGGCGCGGGACTCCGTCGCCCTCCTCGGCGGCGCCGCCTACGACGTCCCGCTCGGCCGCCGCGACGGGCT
GCAGTCCAACCCCTGGGAGGTGGACCTGCCGGCCCCCTTCGCGCGCCTCGACGACGCGCTCCGCTCCTTCGCCGCCAGGG
GCTTCTCGGCGGAGGAGACGGTGGTGCTCTTCGGCGCCCACACCGTCGGCGCCACGCGCTGCTCCCACTTCCGCTACCGC
CTCGCGCACCCGGACGGCACCATGGACGAGGCGCTCCGGCGCGACATGGCCGAGGCGTGCGGCCTCGCCGGCGGCGACCT
GCCGCCGGACGACGACCCCACCGCGTTCCTCGACCCGGACACGCCGTTCGCCATCGACAACGCGTGCTACGGCCAGATGA
TTGGCAACCGGAGCCTCCTGCAGCTGGACCAGGAGGCCGCCACGCACCCCGCCACGGCCGGCCACGTCGGCTACTACGCG
GCCAGCCCCGACGCGTTCGTGCGGCGGTTCTCGGAGGCCATGGCCAAGCTGGCGGCCGTGGGCGTGCTCGAGGGGGACGC
CGGCGAGGTCAGGAAGGTGTGCAGCGCGTACAACAAATGACACGTACGTACGCGGCCAGTCGATCAAGTTCCTGGCAGAG
AAATTGCTGGAGTAGTCATTA-CAGTAGTAGATAAAGCGATTCGATCGATATATTCTCTTTGTTCTTGGTTAGATCGTAG
TGGTTGACCTGATTAGGTTAAAGAAACTAGTCAAGTGAGTCAGGTCGATGATGTAACTTGTGAAATGTTAACATCTCGGA
GAAAGGATTACGGATGCTTGTTGTCGCGAGCCGACACTGATTAGATTAAGGCAACTGAAATTGGGTGGCCGCGAGAACTG
AGCTAGTTGGCAAGGTTGGGAGTTCGTAGCCAGCCCACCAGGGTTCAAGTCTCAGCTTGAGCGTTTGGTGCTCACGGAGT
TTTTTTCTATAAAAAATGCCAACAAGCTAGTCTAGCCCGGGTTGGTCTTGTTTTTTTTTTAAATTAGGTGGCCGTGTACA
CGTCATTCAGTGCTAGTAGAGTACTCCCTCTCCTGTCGCTTGTCCTATTGAGAAACAGTAAAACGGGGCGAGCTACAGCC
CTCCACAGCGATTTGATGCTCACAGCCGTCGGATCACTCTCACCTACGCACAGGATTTGTTTGGACGTCCAGCGTA--GT
TTTTGGGCTGCTGCTCCGGGGAACGAGTTACGCTAACTGTCCCGAATTGGGCCGTTAGGTACAAGGCCCAAGAGTTTTCC
AGTTGAGCGTAGAAAGCCTCCTAGCCTGATTCGTACGTTATCCATCTAACATACCAGATCGCCTAACCTAAACCTCGAGC
TGCT-CCCTGTTCTTCGGCGTTGCGCCGCCGCCGACCTCCATCCCTGCGGCGAGCTTCTATTGCTTGTCGGCATCGGCGT
TGATGCCCTCTACTCATCCTCCGCAGGCCCCCGCGGTGGGTCTCATCTTCGCAATGTCGTGCCCTGCAACGTTCTTCCAT
GGAGGTTGCGGGCCAGAGCACGCGCGACCAGCGACCAATGCGCGGCTGGACGATTAAGGCCACACGTGTAAGTGCATGCC
AACA
>chr2A_186
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-------------------------AATCTCTCTTTTGAATTGAGATCAATATACAGGTGGGAATTCCTTCCCTGGTGAG
TGATTAAAGAAAAACATCCAGGCGTTGATCGCTTAAATGTATTGGATCAACACCTGGGCCAGATCTGCAAACACATGAAT
GTGGCGGTTGCCGACCTGCCCTGCTCTGCCCTAGATACGTTCGTCTCGCACACAGAGTCAACACGCGCAAACAAAGTCAA
CACTCAACACATACACACACACACACAGT---------------------------------------------------
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----------------------------------------CACACACACGCTGCAGCTTATACATCAAACTCATCTCACC
TATCAGCTATGCATCCATGCATCACATATTCACATTCACATCACATGCAGCACCGACGACACAACATGC-----------
----GTACGAGCATGTACTCTGTTCTTCTCCTGCAGCTCGTGCTCGCGGGCGCCATTGCCCGGCGCGTCGTCGTGGTCGA
AGCTCTGGACGTAGGTTACTACGCCGCGACGTGCCCGGACGCCGCGGCGACGGTGCGGCAGGCCATGGAGCTGCAGTTCT
ACAACGACCGCACCATCGCCCCCGCCATCATCCGCATGCTCTTCCACGACTGCTTCGTCAGGGTACGTAGTACGTGCCAC
GGTCCATGGCCGCC--TCCATCTCAAGCTCTACGTACGCGTGCAACTAGTAGTGGTGATGGTGATCGATCATGCATGCAT
GCAGGGCTGCGACGCGTCGGTGATGATCGTCTCGACGGCGAGGCGGTCGTCGGAGCGGGTGGCGATCCCGAACCAGACGC
TGCGCGGCTTCAACATCGTCAACCGGGTCAAGAAGGCCCTGGAGTCGGCCTGCCCGGGCGCGGTCTCCTGCGCCGACGCG
CTGGCGCTCATGGCGCGGGACTCCGTCGTCCTCCTCGGCGGCGCCGCCTACGACGTCCCGCTCGGCCGCCGCGACGGGCT
GCAGTCCAACCCCTGGGAGGTCGACCTTCCGGCCCCCTTCGCGCGCCTCGACGACGCGCTCGGCGCCTTCGCCGCCAGGG
GCTTCTCGGCGGAGGAGACGGTGGTGCTCTTCGGCGGCCACACCGTCGGCGCCACGCGCTGCTCCCACTTCCGCTACCGC
CTCGCGCACCCGGACGGCACCATGGACGAGGCGCTCCGGCGCGGCATGGCCGACGCGTGCGGCCTCGCCGGCGGCGACCT
GCCGCCAGACGCCGACCCCACCGCGTTCCTCGACCCGGAGACGCCGTTCGCCATCGACAACGCCTGCTACGGCCAGATGA
TGGGCAACCGGAGCCTCCTGCAGCTGGACCAGGAGGCCGCCACGCACCCCGCCACGGCCGGCCACGTCGCGTACTACGCG
GCCAGCCCCGACGCGTTCGTGCGGCGGTTCTCGGAGGCCATGGCCAAGCTGGCGGCCGTCGGGGTGCTCGAGGGGGACGC
CGGCGAGGTCAGGAAGGTGTGCAGCGCGTACAACAAATGACACGTACGTCCGCGGCCAGTCGACCAAGTTCCTGTCAGAG
AAATTGCTGGAGTAGTCAATTGCAGTAGTAGATTAAGCGATTCGATCGATATATTCTCTTTTTTCTTGGTTAGATCGAAG
TGGTTGACCTGATTAGGCTACAGA------------------------------AACTTGTGAAATGTTAACTTCTCCGA
GAAAGGGTTAAGGATGCTTGTTGTCGCGAGCCGACACTGATTAGA-----------------------------------
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>chr1D_2584
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----------------------------------------------ATTGAGAAACAGTAAAACGAGGCAAGCTACAGAC
CTCCACAGTGATTTGATGCTCACAGCCATCGGATCACTCTCACCTACGCACATGATTTGTTTGGCCGTCCAGCGTACTGT
TTTCGGGCTGCTGCTCTGGGGAACGAGTTACGCTAACTGTCCCGAATTGGGCCGTTAGGTAGAAGGCCCAAGAGTTTTCC
AGTCGAACGGACAAAGCCTCCTAG----ATTCGTATGTTATCCATCTAACATGCCAGGTCGCCTAACCTAT-CCTCGAGC
TGCTCCCATGTTCTTCTGTGTTGCGCCGCCGCCGACCTCCGTCCCGGCGGCGAGCTTCTATTGCTTGTCGGCCTCGGCAT
TAATGCCCTCTACTCATCCTCCGCAGGCCCCTGCAGCGGGTCTCATCTTCGCAATGTCGTGCCCTGCAGCGTTCTTCCAT
GGAGGTTGCAGGCCAGAGCACGCACGACCAACGACCAATGCGCAACTGGACGATTAAGGCCACGCGTGTAAGTGCATGCC
AACA
>chr1D_2584
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----------------------------------------------ATTGACAAACAGTAAAACGAGGAGAGCTACAGCC
ATCCACAGTGATTTGATGCTCACAGCCATCGGGTCACTCTCACCTACGCACATGATTTGTTTGGCCGTCCAGCATACTGT
TTTCGGGCTGCTGCTCTGGGGAACGAGTTACGCTAACTGTCCCGAATTGGGCCGTTAGGTAGAAGGCCCAAGAGTTTTCC
AGTCGAATGGACAAAGCCTCCTAG----ATTCGTATGTTATCCATCTAACATGCCAGGTCGCCTAACCTAT-CCTCGAGC
TGCTCCCCTATTCTTCTGTGTTGCGCCGCCACCAACCTCCGTCCCGGCGGCGAGCTTCTATTGCTTGTCGGGCTCGGCGT
TGATGCCCTCTACTCATCCTCCGCAGGCCCCCGCAGTGGGTCTCATCTTCGCAATGTCGTGCCCTGCAGTGTTCTTCCAT
GGAGGTTGCGGGCCAGAGCACGCGCGACCAATGTCCAATGCACGGCTGGACGATTAAGGCCACGCGTGTAAGTGCATGCC
AACA
>chr1D_2584
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----------------------------------------------ATTGACAAACAGTAAAACAAGGCGAGCTACAGCC
ATCCACAGTGATTTGATGCTCACAGCCATCGGATCACTCTCACCTATGCACATGATTTGTTTGGCCGTCCAGTGTACTGT
TTTCGGGCTGCTGCTCTGGGGAACGAGTTACGCTAACTGTCCCGAATTGGGCCGTTAGGTAGAAGGCCCAAGAGTTTTCC
AGTCGAACGGACAAAGCCTCCTAG----ATTCGTATGTTATCCATCTAACATGCCAGGTCGCCTAACCTAT-CCTCGAGC
TGCTCCCCTGTTCTTCTGTGTTGCGCCGCCGCCGACCTTCGTCCCGGCGGCGAGCTTCTATTGCTTGTCGGCCTCGGCGT
TGATGCCCTCTACTCATCCTCCGCAGGCCCCCATAGCGGGTCTCATCTTCGCAATGTCGTGCCCTTAAGTGTTCTTCCAT
GGAGGTTGCGGGCCAGAGCACGCGCGGCCAACGACCAATGCGCGGCTGGACGATTAAGGCCACGCATGTAAGTGCATGCC
AACA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------------
-----------------S----S---------------------------------------------------------
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-----------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---------S-------------S------
--------------S-S-----SSS------------------S----------S--------------SSSSSSSSSSS
SSSS---------------S------------------------------------------S----S-----------S
---S--------S-------------------------------------------------------------------
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--------------SS-------------------S--S--------S-------------------S------------
S-----S-----------------------SS--S-----S---------------------------------------
------------------------------------------------------------S----------------S--
----------------------------S---------------------------------------------------
---------------------S-----S---------------------------------S--S---------------
------------------------------------S-------------------------------------------
-------------------------------------------S---------S--------------------------
------S----S---------------------------S-----------------------S----------------
-S-------------------------------------------------------------------SS---------
-----------------------------------------------------------S--S-----------------
-------------------------------------------------S-------------S----------S-----
------------------S-S------------S---------------------------S---------------S--
-----------------S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S----S--
------S---S----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S--------------
--------S------------------S------------------------S-----------S---------------
---S------------S--------------------------------------------S------------------
---S--S--S-S------------SSSS-------S----------------S----S------------SS--------
----------------S-S---------------------S----S--------------------------S-------
----------------------------------S---------------------------------S-----------
------------------------------S--------------------------------S----------------
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>forward_89
---------------------------------------------------------------------CCGGCTCCTGT
ATGAGTGAC-----------------------------------------------------------------------
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>reverse_1124
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---CCTGGACGTGGGTTACTACG---------------------------------------------------------
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>forward_183
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---TGTTGCCCACGTAAACTGGA---------------------------------------------------------
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>reverse_1328
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-----------------------------------------------TGTGATCGGTCATGCATGCA-------------
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>forward_940
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----------------------------------------CACACACACTCTGCAGCTTG--------------------
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>reverse_2409
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--------GGCAAGGTTGGGAGTTCGTA----------------------------------------------------
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