Multiple sequence alignment - TraesCS2D01G036000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G036000 chr2D 100.000 1526 0 0 1 1526 13632576 13634101 0.000000e+00 2819.0
1 TraesCS2D01G036000 chr2D 100.000 341 0 0 1888 2228 13634463 13634803 4.040000e-177 630.0
2 TraesCS2D01G036000 chr2D 76.601 859 153 30 389 1235 12743430 12742608 1.580000e-116 429.0
3 TraesCS2D01G036000 chr2D 78.986 138 20 3 1256 1386 10210016 10209881 3.940000e-13 86.1
4 TraesCS2D01G036000 chr2A 95.994 1298 42 3 1 1293 15641880 15643172 0.000000e+00 2100.0
5 TraesCS2D01G036000 chr2A 83.990 1243 150 29 3 1232 15906036 15904830 0.000000e+00 1147.0
6 TraesCS2D01G036000 chr2A 97.340 188 5 0 2041 2228 15643538 15643725 9.930000e-84 320.0
7 TraesCS2D01G036000 chr2A 93.976 83 4 1 1967 2049 15643282 15643363 8.350000e-25 124.0
8 TraesCS2D01G036000 chr2B 92.411 1265 67 13 1 1264 24889361 24890597 0.000000e+00 1777.0
9 TraesCS2D01G036000 chr2B 84.330 1238 158 23 3 1234 24882886 24884093 0.000000e+00 1179.0
10 TraesCS2D01G036000 chr2B 83.847 1232 143 28 3 1230 24905804 24906983 0.000000e+00 1122.0
11 TraesCS2D01G036000 chr2B 89.474 57 5 1 1255 1311 6530149 6530204 1.100000e-08 71.3
12 TraesCS2D01G036000 chr2B 89.091 55 6 0 1256 1310 11466126 11466180 3.970000e-08 69.4
13 TraesCS2D01G036000 chr4B 80.630 857 122 26 389 1235 600605582 600604760 6.760000e-175 623.0
14 TraesCS2D01G036000 chr4B 85.448 268 36 2 13 277 600605931 600605664 2.180000e-70 276.0
15 TraesCS2D01G036000 chr4B 84.815 270 38 2 11 277 600517543 600517274 3.650000e-68 268.0
16 TraesCS2D01G036000 chr4D 80.471 850 127 23 389 1235 476229102 476228289 4.070000e-172 614.0
17 TraesCS2D01G036000 chr4A 85.448 268 36 1 11 275 683443031 683442764 2.180000e-70 276.0
18 TraesCS2D01G036000 chr6A 73.341 844 172 35 389 1214 24054802 24053994 1.700000e-66 263.0
19 TraesCS2D01G036000 chr6A 80.791 177 25 5 1256 1423 85700208 85700384 1.800000e-26 130.0
20 TraesCS2D01G036000 chr5A 94.444 54 3 0 1256 1309 624197110 624197057 1.420000e-12 84.2
21 TraesCS2D01G036000 chr3A 76.875 160 23 8 1256 1402 18968457 18968299 6.600000e-11 78.7
22 TraesCS2D01G036000 chr3A 80.172 116 10 7 1255 1360 12052313 12052425 8.530000e-10 75.0
23 TraesCS2D01G036000 chr3A 100.000 38 0 0 1256 1293 123052077 123052114 1.100000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G036000 chr2D 13632576 13634803 2227 False 1724.5 2819 100.000 1 2228 2 chr2D.!!$F1 2227
1 TraesCS2D01G036000 chr2D 12742608 12743430 822 True 429.0 429 76.601 389 1235 1 chr2D.!!$R2 846
2 TraesCS2D01G036000 chr2A 15904830 15906036 1206 True 1147.0 1147 83.990 3 1232 1 chr2A.!!$R1 1229
3 TraesCS2D01G036000 chr2A 15641880 15643725 1845 False 848.0 2100 95.770 1 2228 3 chr2A.!!$F1 2227
4 TraesCS2D01G036000 chr2B 24889361 24890597 1236 False 1777.0 1777 92.411 1 1264 1 chr2B.!!$F4 1263
5 TraesCS2D01G036000 chr2B 24882886 24884093 1207 False 1179.0 1179 84.330 3 1234 1 chr2B.!!$F3 1231
6 TraesCS2D01G036000 chr2B 24905804 24906983 1179 False 1122.0 1122 83.847 3 1230 1 chr2B.!!$F5 1227
7 TraesCS2D01G036000 chr4B 600604760 600605931 1171 True 449.5 623 83.039 13 1235 2 chr4B.!!$R2 1222
8 TraesCS2D01G036000 chr4D 476228289 476229102 813 True 614.0 614 80.471 389 1235 1 chr4D.!!$R1 846
9 TraesCS2D01G036000 chr6A 24053994 24054802 808 True 263.0 263 73.341 389 1214 1 chr6A.!!$R1 825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 291 0.381801 CAAAAGGTCAGTGCAACGCT 59.618 50.0 0.0 0.0 45.86 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 2008 0.402121 GAAAGTTGGGAGGAGCCTGT 59.598 55.0 0.0 0.0 36.66 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
283 291 0.381801 CAAAAGGTCAGTGCAACGCT 59.618 50.000 0.00 0.00 45.86 5.07
312 320 3.492309 CCTTCTCTTCTCCCATGATGACG 60.492 52.174 0.00 0.00 0.00 4.35
336 356 5.221185 GGACCTGTAAGTAATCTGCATACGA 60.221 44.000 0.00 0.00 0.00 3.43
337 357 6.406692 ACCTGTAAGTAATCTGCATACGAT 57.593 37.500 0.00 0.00 0.00 3.73
338 358 7.309012 GGACCTGTAAGTAATCTGCATACGATA 60.309 40.741 0.00 0.00 0.00 2.92
339 359 8.123639 ACCTGTAAGTAATCTGCATACGATAT 57.876 34.615 0.00 0.00 0.00 1.63
734 767 2.037367 TCTAGCTCCCACGCCTGT 59.963 61.111 0.00 0.00 0.00 4.00
888 921 4.032310 TCCGGCTACCTAAATTCAAGGTA 58.968 43.478 15.40 15.40 45.69 3.08
915 948 1.541475 GCATGACGATGAACGACGTA 58.459 50.000 0.00 0.00 45.77 3.57
924 957 1.608055 TGAACGACGTACTCCAGGAA 58.392 50.000 0.00 0.00 0.00 3.36
1025 1070 2.450476 GCTGGAAAAGGTGATCCACAT 58.550 47.619 0.00 0.00 40.74 3.21
1203 1268 1.819632 GATTCTGTTCGCGGGGCAT 60.820 57.895 6.13 0.00 0.00 4.40
1293 1358 6.314400 ACAAAGAGTTACACACAATTACACGT 59.686 34.615 0.00 0.00 0.00 4.49
1295 1360 8.329583 CAAAGAGTTACACACAATTACACGTAA 58.670 33.333 0.00 0.00 0.00 3.18
1298 1363 7.707893 AGAGTTACACACAATTACACGTAAACT 59.292 33.333 0.00 0.00 0.00 2.66
1300 1365 5.319232 ACACACAATTACACGTAAACTCG 57.681 39.130 0.00 0.00 0.00 4.18
1301 1366 5.042593 ACACACAATTACACGTAAACTCGA 58.957 37.500 0.00 0.00 34.70 4.04
1302 1367 5.519566 ACACACAATTACACGTAAACTCGAA 59.480 36.000 0.00 0.00 34.70 3.71
1303 1368 6.201425 ACACACAATTACACGTAAACTCGAAT 59.799 34.615 0.00 0.00 34.70 3.34
1304 1369 7.067116 CACACAATTACACGTAAACTCGAATT 58.933 34.615 0.00 0.00 34.70 2.17
1305 1370 7.265495 CACACAATTACACGTAAACTCGAATTC 59.735 37.037 0.00 0.00 34.70 2.17
1306 1371 7.170320 ACACAATTACACGTAAACTCGAATTCT 59.830 33.333 3.52 0.00 34.70 2.40
1307 1372 8.007716 CACAATTACACGTAAACTCGAATTCTT 58.992 33.333 3.52 0.00 34.70 2.52
1308 1373 8.553696 ACAATTACACGTAAACTCGAATTCTTT 58.446 29.630 3.52 0.35 34.70 2.52
1309 1374 9.377383 CAATTACACGTAAACTCGAATTCTTTT 57.623 29.630 3.52 3.27 34.70 2.27
1310 1375 9.940166 AATTACACGTAAACTCGAATTCTTTTT 57.060 25.926 3.52 2.94 34.70 1.94
1337 1402 6.652205 ACTAACCCTTGATTTTCATAGGGA 57.348 37.500 21.41 7.99 42.40 4.20
1355 1420 2.923852 GATGGGCCCCTTCTCTCCCT 62.924 65.000 22.27 0.00 39.49 4.20
1356 1421 2.286502 GGGCCCCTTCTCTCCCTT 60.287 66.667 12.23 0.00 35.87 3.95
1357 1422 2.684499 GGGCCCCTTCTCTCCCTTG 61.684 68.421 12.23 0.00 35.87 3.61
1358 1423 1.616628 GGCCCCTTCTCTCCCTTGA 60.617 63.158 0.00 0.00 0.00 3.02
1361 1426 1.974197 GCCCCTTCTCTCCCTTGATCT 60.974 57.143 0.00 0.00 0.00 2.75
1362 1427 2.046292 CCCCTTCTCTCCCTTGATCTC 58.954 57.143 0.00 0.00 0.00 2.75
1363 1428 2.360209 CCCCTTCTCTCCCTTGATCTCT 60.360 54.545 0.00 0.00 0.00 3.10
1365 1430 4.551671 CCCTTCTCTCCCTTGATCTCTAA 58.448 47.826 0.00 0.00 0.00 2.10
1366 1431 5.154418 CCCTTCTCTCCCTTGATCTCTAAT 58.846 45.833 0.00 0.00 0.00 1.73
1369 1434 7.291182 CCCTTCTCTCCCTTGATCTCTAATTAA 59.709 40.741 0.00 0.00 0.00 1.40
1370 1435 8.709308 CCTTCTCTCCCTTGATCTCTAATTAAA 58.291 37.037 0.00 0.00 0.00 1.52
1372 1437 9.892130 TTCTCTCCCTTGATCTCTAATTAAAAC 57.108 33.333 0.00 0.00 0.00 2.43
1373 1438 8.487028 TCTCTCCCTTGATCTCTAATTAAAACC 58.513 37.037 0.00 0.00 0.00 3.27
1374 1439 7.574607 TCTCCCTTGATCTCTAATTAAAACCC 58.425 38.462 0.00 0.00 0.00 4.11
1375 1440 7.183839 TCTCCCTTGATCTCTAATTAAAACCCA 59.816 37.037 0.00 0.00 0.00 4.51
1376 1441 7.116736 TCCCTTGATCTCTAATTAAAACCCAC 58.883 38.462 0.00 0.00 0.00 4.61
1377 1442 6.889722 CCCTTGATCTCTAATTAAAACCCACA 59.110 38.462 0.00 0.00 0.00 4.17
1378 1443 7.561356 CCCTTGATCTCTAATTAAAACCCACAT 59.439 37.037 0.00 0.00 0.00 3.21
1379 1444 8.408601 CCTTGATCTCTAATTAAAACCCACATG 58.591 37.037 0.00 0.00 0.00 3.21
1380 1445 7.333528 TGATCTCTAATTAAAACCCACATGC 57.666 36.000 0.00 0.00 0.00 4.06
1381 1446 7.118723 TGATCTCTAATTAAAACCCACATGCT 58.881 34.615 0.00 0.00 0.00 3.79
1382 1447 7.615365 TGATCTCTAATTAAAACCCACATGCTT 59.385 33.333 0.00 0.00 0.00 3.91
1383 1448 7.156876 TCTCTAATTAAAACCCACATGCTTG 57.843 36.000 0.00 0.00 0.00 4.01
1384 1449 6.719370 TCTCTAATTAAAACCCACATGCTTGT 59.281 34.615 0.00 0.00 36.15 3.16
1385 1450 7.885922 TCTCTAATTAAAACCCACATGCTTGTA 59.114 33.333 4.73 0.00 33.76 2.41
1386 1451 8.410673 TCTAATTAAAACCCACATGCTTGTAA 57.589 30.769 4.73 0.00 33.76 2.41
1387 1452 8.861086 TCTAATTAAAACCCACATGCTTGTAAA 58.139 29.630 4.73 0.00 33.76 2.01
1388 1453 9.482627 CTAATTAAAACCCACATGCTTGTAAAA 57.517 29.630 4.73 0.00 33.76 1.52
1389 1454 7.722795 ATTAAAACCCACATGCTTGTAAAAC 57.277 32.000 4.73 0.00 33.76 2.43
1390 1455 3.744238 AACCCACATGCTTGTAAAACC 57.256 42.857 4.73 0.00 33.76 3.27
1391 1456 1.967779 ACCCACATGCTTGTAAAACCC 59.032 47.619 4.73 0.00 33.76 4.11
1392 1457 1.067915 CCCACATGCTTGTAAAACCCG 60.068 52.381 4.73 0.00 33.76 5.28
1393 1458 1.611491 CCACATGCTTGTAAAACCCGT 59.389 47.619 4.73 0.00 33.76 5.28
1394 1459 2.814919 CCACATGCTTGTAAAACCCGTA 59.185 45.455 4.73 0.00 33.76 4.02
1395 1460 3.442273 CCACATGCTTGTAAAACCCGTAT 59.558 43.478 4.73 0.00 33.76 3.06
1396 1461 4.636648 CCACATGCTTGTAAAACCCGTATA 59.363 41.667 4.73 0.00 33.76 1.47
1397 1462 5.124138 CCACATGCTTGTAAAACCCGTATAA 59.876 40.000 4.73 0.00 33.76 0.98
1398 1463 6.349445 CCACATGCTTGTAAAACCCGTATAAA 60.349 38.462 4.73 0.00 33.76 1.40
1399 1464 6.525280 CACATGCTTGTAAAACCCGTATAAAC 59.475 38.462 4.73 0.00 33.76 2.01
1400 1465 5.625921 TGCTTGTAAAACCCGTATAAACC 57.374 39.130 0.00 0.00 0.00 3.27
1401 1466 5.315348 TGCTTGTAAAACCCGTATAAACCT 58.685 37.500 0.00 0.00 0.00 3.50
1402 1467 6.471146 TGCTTGTAAAACCCGTATAAACCTA 58.529 36.000 0.00 0.00 0.00 3.08
1403 1468 7.111466 TGCTTGTAAAACCCGTATAAACCTAT 58.889 34.615 0.00 0.00 0.00 2.57
1410 1475 8.441312 AAAACCCGTATAAACCTATGTATGTG 57.559 34.615 0.00 0.00 0.00 3.21
1422 1487 4.686091 CCTATGTATGTGTGGCATTACTCG 59.314 45.833 0.00 0.00 38.94 4.18
1423 1488 3.603158 TGTATGTGTGGCATTACTCGT 57.397 42.857 0.00 0.00 38.94 4.18
1424 1489 3.517602 TGTATGTGTGGCATTACTCGTC 58.482 45.455 0.00 0.00 38.94 4.20
1425 1490 2.024176 ATGTGTGGCATTACTCGTCC 57.976 50.000 0.00 0.00 33.14 4.79
1426 1491 0.682292 TGTGTGGCATTACTCGTCCA 59.318 50.000 0.00 0.00 0.00 4.02
1427 1492 1.070914 TGTGTGGCATTACTCGTCCAA 59.929 47.619 0.00 0.00 0.00 3.53
1428 1493 1.732259 GTGTGGCATTACTCGTCCAAG 59.268 52.381 0.00 0.00 0.00 3.61
1429 1494 1.338674 TGTGGCATTACTCGTCCAAGG 60.339 52.381 0.00 0.00 0.00 3.61
1430 1495 0.392461 TGGCATTACTCGTCCAAGGC 60.392 55.000 0.00 0.00 0.00 4.35
1431 1496 0.107654 GGCATTACTCGTCCAAGGCT 60.108 55.000 0.00 0.00 32.34 4.58
1432 1497 1.291132 GCATTACTCGTCCAAGGCTC 58.709 55.000 0.00 0.00 0.00 4.70
1433 1498 1.405526 GCATTACTCGTCCAAGGCTCA 60.406 52.381 0.00 0.00 0.00 4.26
1434 1499 2.544685 CATTACTCGTCCAAGGCTCAG 58.455 52.381 0.00 0.00 0.00 3.35
1435 1500 1.629043 TTACTCGTCCAAGGCTCAGT 58.371 50.000 0.00 0.00 0.00 3.41
1436 1501 0.888619 TACTCGTCCAAGGCTCAGTG 59.111 55.000 0.00 0.00 0.00 3.66
1437 1502 1.079543 CTCGTCCAAGGCTCAGTGG 60.080 63.158 0.00 0.00 36.13 4.00
1438 1503 1.533033 TCGTCCAAGGCTCAGTGGA 60.533 57.895 2.22 2.22 41.72 4.02
1439 1504 0.904865 TCGTCCAAGGCTCAGTGGAT 60.905 55.000 9.52 0.00 45.50 3.41
1440 1505 0.036010 CGTCCAAGGCTCAGTGGATT 60.036 55.000 9.52 0.00 45.50 3.01
1441 1506 1.457346 GTCCAAGGCTCAGTGGATTG 58.543 55.000 9.52 0.00 45.50 2.67
1442 1507 1.003580 GTCCAAGGCTCAGTGGATTGA 59.996 52.381 9.52 0.00 45.50 2.57
1443 1508 1.280133 TCCAAGGCTCAGTGGATTGAG 59.720 52.381 2.22 0.00 45.85 3.02
1444 1509 1.280133 CCAAGGCTCAGTGGATTGAGA 59.720 52.381 7.18 0.00 45.95 3.27
1449 1514 3.325293 GCTCAGTGGATTGAGACTTGA 57.675 47.619 7.18 0.00 45.95 3.02
1450 1515 3.871485 GCTCAGTGGATTGAGACTTGAT 58.129 45.455 7.18 0.00 45.95 2.57
1451 1516 5.016051 GCTCAGTGGATTGAGACTTGATA 57.984 43.478 7.18 0.00 45.95 2.15
1452 1517 5.423015 GCTCAGTGGATTGAGACTTGATAA 58.577 41.667 7.18 0.00 45.95 1.75
1453 1518 6.054295 GCTCAGTGGATTGAGACTTGATAAT 58.946 40.000 7.18 0.00 45.95 1.28
1454 1519 7.212976 GCTCAGTGGATTGAGACTTGATAATA 58.787 38.462 7.18 0.00 45.95 0.98
1455 1520 7.170658 GCTCAGTGGATTGAGACTTGATAATAC 59.829 40.741 7.18 0.00 45.95 1.89
1456 1521 8.311395 TCAGTGGATTGAGACTTGATAATACT 57.689 34.615 0.00 0.00 0.00 2.12
1457 1522 9.421399 TCAGTGGATTGAGACTTGATAATACTA 57.579 33.333 0.00 0.00 0.00 1.82
1458 1523 9.689976 CAGTGGATTGAGACTTGATAATACTAG 57.310 37.037 0.00 0.00 0.00 2.57
1459 1524 9.647918 AGTGGATTGAGACTTGATAATACTAGA 57.352 33.333 0.00 0.00 0.00 2.43
1460 1525 9.685828 GTGGATTGAGACTTGATAATACTAGAC 57.314 37.037 0.00 0.00 0.00 2.59
1461 1526 8.861086 TGGATTGAGACTTGATAATACTAGACC 58.139 37.037 0.00 0.00 0.00 3.85
1462 1527 9.084533 GGATTGAGACTTGATAATACTAGACCT 57.915 37.037 0.00 0.00 0.00 3.85
1469 1534 9.828852 GACTTGATAATACTAGACCTATGAACG 57.171 37.037 0.00 0.00 0.00 3.95
1470 1535 9.570468 ACTTGATAATACTAGACCTATGAACGA 57.430 33.333 0.00 0.00 0.00 3.85
1480 1545 9.367444 ACTAGACCTATGAACGATTTTACAAAG 57.633 33.333 0.00 0.00 0.00 2.77
1481 1546 7.073342 AGACCTATGAACGATTTTACAAAGC 57.927 36.000 0.00 0.00 0.00 3.51
1482 1547 6.879458 AGACCTATGAACGATTTTACAAAGCT 59.121 34.615 0.00 0.00 0.00 3.74
1483 1548 7.390718 AGACCTATGAACGATTTTACAAAGCTT 59.609 33.333 0.00 0.00 0.00 3.74
1484 1549 7.882179 ACCTATGAACGATTTTACAAAGCTTT 58.118 30.769 5.69 5.69 0.00 3.51
1485 1550 9.005777 ACCTATGAACGATTTTACAAAGCTTTA 57.994 29.630 12.25 0.00 0.00 1.85
1512 1577 9.895138 TGTAACTTTCTAACAACTAAACCTTCT 57.105 29.630 0.00 0.00 0.00 2.85
1514 1579 8.447924 AACTTTCTAACAACTAAACCTTCTCC 57.552 34.615 0.00 0.00 0.00 3.71
1515 1580 6.996879 ACTTTCTAACAACTAAACCTTCTCCC 59.003 38.462 0.00 0.00 0.00 4.30
1516 1581 5.494390 TCTAACAACTAAACCTTCTCCCC 57.506 43.478 0.00 0.00 0.00 4.81
1517 1582 3.520691 AACAACTAAACCTTCTCCCCC 57.479 47.619 0.00 0.00 0.00 5.40
1932 1997 6.715344 CATGTTTGCAAAAATGCTAGACAT 57.285 33.333 25.47 14.10 42.30 3.06
1933 1998 7.815398 CATGTTTGCAAAAATGCTAGACATA 57.185 32.000 25.47 0.00 38.34 2.29
1934 1999 8.415192 CATGTTTGCAAAAATGCTAGACATAT 57.585 30.769 25.47 0.00 38.34 1.78
1935 2000 9.518906 CATGTTTGCAAAAATGCTAGACATATA 57.481 29.630 25.47 0.00 38.34 0.86
1936 2001 9.740239 ATGTTTGCAAAAATGCTAGACATATAG 57.260 29.630 14.19 0.00 38.34 1.31
1937 2002 8.190122 TGTTTGCAAAAATGCTAGACATATAGG 58.810 33.333 14.67 0.00 38.34 2.57
1938 2003 7.880160 TTGCAAAAATGCTAGACATATAGGT 57.120 32.000 0.00 0.00 38.34 3.08
1939 2004 7.880160 TGCAAAAATGCTAGACATATAGGTT 57.120 32.000 0.00 0.00 38.34 3.50
1940 2005 8.292444 TGCAAAAATGCTAGACATATAGGTTT 57.708 30.769 0.00 0.00 38.34 3.27
1941 2006 8.748412 TGCAAAAATGCTAGACATATAGGTTTT 58.252 29.630 0.00 0.00 38.34 2.43
1942 2007 9.586435 GCAAAAATGCTAGACATATAGGTTTTT 57.414 29.630 0.00 0.00 38.34 1.94
1947 2012 9.561069 AATGCTAGACATATAGGTTTTTACAGG 57.439 33.333 0.00 0.00 38.34 4.00
1948 2013 6.990349 TGCTAGACATATAGGTTTTTACAGGC 59.010 38.462 0.00 0.00 0.00 4.85
1949 2014 7.147549 TGCTAGACATATAGGTTTTTACAGGCT 60.148 37.037 0.00 0.00 0.00 4.58
1950 2015 7.385478 GCTAGACATATAGGTTTTTACAGGCTC 59.615 40.741 0.00 0.00 0.00 4.70
1951 2016 6.592870 AGACATATAGGTTTTTACAGGCTCC 58.407 40.000 0.00 0.00 0.00 4.70
1952 2017 6.387220 AGACATATAGGTTTTTACAGGCTCCT 59.613 38.462 0.00 0.00 0.00 3.69
1953 2018 6.592870 ACATATAGGTTTTTACAGGCTCCTC 58.407 40.000 0.00 0.00 0.00 3.71
1954 2019 2.881111 AGGTTTTTACAGGCTCCTCC 57.119 50.000 0.00 0.00 0.00 4.30
1955 2020 1.354705 AGGTTTTTACAGGCTCCTCCC 59.645 52.381 0.00 0.00 34.51 4.30
1956 2021 1.074889 GGTTTTTACAGGCTCCTCCCA 59.925 52.381 0.00 0.00 34.51 4.37
1957 2022 2.490168 GGTTTTTACAGGCTCCTCCCAA 60.490 50.000 0.00 0.00 34.51 4.12
1958 2023 2.557056 GTTTTTACAGGCTCCTCCCAAC 59.443 50.000 0.00 0.00 34.51 3.77
1959 2024 1.742308 TTTACAGGCTCCTCCCAACT 58.258 50.000 0.00 0.00 34.51 3.16
1960 2025 1.742308 TTACAGGCTCCTCCCAACTT 58.258 50.000 0.00 0.00 34.51 2.66
1961 2026 1.742308 TACAGGCTCCTCCCAACTTT 58.258 50.000 0.00 0.00 34.51 2.66
1962 2027 0.402121 ACAGGCTCCTCCCAACTTTC 59.598 55.000 0.00 0.00 34.51 2.62
1963 2028 0.695347 CAGGCTCCTCCCAACTTTCT 59.305 55.000 0.00 0.00 34.51 2.52
1964 2029 1.909302 CAGGCTCCTCCCAACTTTCTA 59.091 52.381 0.00 0.00 34.51 2.10
1965 2030 2.305927 CAGGCTCCTCCCAACTTTCTAA 59.694 50.000 0.00 0.00 34.51 2.10
1966 2031 2.986728 AGGCTCCTCCCAACTTTCTAAA 59.013 45.455 0.00 0.00 34.51 1.85
1967 2032 3.593780 AGGCTCCTCCCAACTTTCTAAAT 59.406 43.478 0.00 0.00 34.51 1.40
1968 2033 3.696548 GGCTCCTCCCAACTTTCTAAATG 59.303 47.826 0.00 0.00 0.00 2.32
1969 2034 4.336280 GCTCCTCCCAACTTTCTAAATGT 58.664 43.478 0.00 0.00 0.00 2.71
1970 2035 4.767409 GCTCCTCCCAACTTTCTAAATGTT 59.233 41.667 0.00 0.00 0.00 2.71
1971 2036 5.243954 GCTCCTCCCAACTTTCTAAATGTTT 59.756 40.000 0.00 0.00 0.00 2.83
1972 2037 6.648879 TCCTCCCAACTTTCTAAATGTTTG 57.351 37.500 0.00 0.00 0.00 2.93
1973 2038 5.010617 TCCTCCCAACTTTCTAAATGTTTGC 59.989 40.000 0.00 0.00 0.00 3.68
1978 2043 4.257267 ACTTTCTAAATGTTTGCTGCCC 57.743 40.909 0.00 0.00 0.00 5.36
1981 2046 5.716703 ACTTTCTAAATGTTTGCTGCCCTAT 59.283 36.000 0.00 0.00 0.00 2.57
1982 2047 6.211384 ACTTTCTAAATGTTTGCTGCCCTATT 59.789 34.615 0.00 0.00 0.00 1.73
1999 2064 7.278875 TGCCCTATTGTTTGTGATTTTTCTTT 58.721 30.769 0.00 0.00 0.00 2.52
2005 2070 7.969536 TTGTTTGTGATTTTTCTTTGTTGGA 57.030 28.000 0.00 0.00 0.00 3.53
2058 2306 8.752005 TTTTGCTTTCTATATATGGCTTGTCT 57.248 30.769 0.00 0.00 0.00 3.41
2108 2356 9.730420 TCTACTTTTCATGTTGCTTTTTCTAAC 57.270 29.630 0.00 0.00 0.00 2.34
2120 2368 8.618677 GTTGCTTTTTCTAACCAACTACTAAGT 58.381 33.333 0.00 0.00 37.65 2.24
2126 2374 9.754382 TTTTCTAACCAACTACTAAGTGTACTG 57.246 33.333 0.00 0.00 35.62 2.74
2220 2468 7.337942 TCATCCTGCTTCCTCTTTTCTTTTATC 59.662 37.037 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 235 2.125106 GCGACGGCCTTGAAGGAT 60.125 61.111 16.93 0.00 37.67 3.24
283 291 4.626942 TGGGAGAAGAGAAGGGAAGATA 57.373 45.455 0.00 0.00 0.00 1.98
312 320 4.982916 CGTATGCAGATTACTTACAGGTCC 59.017 45.833 0.00 0.00 0.00 4.46
337 357 9.447157 TGGCAATGACATTAATTGATCGATATA 57.553 29.630 0.00 0.00 37.22 0.86
338 358 8.339344 TGGCAATGACATTAATTGATCGATAT 57.661 30.769 0.00 0.00 37.22 1.63
339 359 7.742556 TGGCAATGACATTAATTGATCGATA 57.257 32.000 0.00 0.00 37.22 2.92
873 906 5.250982 CCGAAGGTTACCTTGAATTTAGGT 58.749 41.667 22.57 15.15 44.82 3.08
924 957 2.983879 CGCCTCCTTGACCCCCATT 61.984 63.158 0.00 0.00 0.00 3.16
982 1018 1.265454 ATCTTCCTCCTTCCGCCGTT 61.265 55.000 0.00 0.00 0.00 4.44
1025 1070 2.279810 TTCACCTCGATGACGGCCA 61.280 57.895 2.24 0.00 40.21 5.36
1203 1268 1.667595 TGATGGTGGGATCAAGGACA 58.332 50.000 0.00 0.00 29.11 4.02
1310 1375 9.250246 CCCTATGAAAATCAAGGGTTAGTTAAA 57.750 33.333 14.42 0.00 38.69 1.52
1311 1376 8.616598 TCCCTATGAAAATCAAGGGTTAGTTAA 58.383 33.333 18.65 4.50 41.47 2.01
1312 1377 8.165267 TCCCTATGAAAATCAAGGGTTAGTTA 57.835 34.615 18.65 4.96 41.47 2.24
1313 1378 7.039722 TCCCTATGAAAATCAAGGGTTAGTT 57.960 36.000 18.65 0.00 41.47 2.24
1314 1379 6.652205 TCCCTATGAAAATCAAGGGTTAGT 57.348 37.500 18.65 0.00 41.47 2.24
1315 1380 6.491403 CCATCCCTATGAAAATCAAGGGTTAG 59.509 42.308 18.65 12.98 41.47 2.34
1316 1381 6.372931 CCATCCCTATGAAAATCAAGGGTTA 58.627 40.000 18.65 8.35 41.47 2.85
1317 1382 5.211201 CCATCCCTATGAAAATCAAGGGTT 58.789 41.667 18.65 12.43 41.47 4.11
1318 1383 4.387891 CCCATCCCTATGAAAATCAAGGGT 60.388 45.833 18.65 9.79 41.47 4.34
1322 1387 3.575805 GGCCCATCCCTATGAAAATCAA 58.424 45.455 0.00 0.00 34.84 2.57
1337 1402 2.368878 GGGAGAGAAGGGGCCCAT 60.369 66.667 27.72 16.07 40.39 4.00
1349 1414 7.183839 TGGGTTTTAATTAGAGATCAAGGGAGA 59.816 37.037 0.00 0.00 0.00 3.71
1351 1416 7.116736 GTGGGTTTTAATTAGAGATCAAGGGA 58.883 38.462 0.00 0.00 0.00 4.20
1355 1420 7.615365 AGCATGTGGGTTTTAATTAGAGATCAA 59.385 33.333 0.00 0.00 0.00 2.57
1356 1421 7.118723 AGCATGTGGGTTTTAATTAGAGATCA 58.881 34.615 0.00 0.00 0.00 2.92
1357 1422 7.573968 AGCATGTGGGTTTTAATTAGAGATC 57.426 36.000 0.00 0.00 0.00 2.75
1358 1423 7.397192 ACAAGCATGTGGGTTTTAATTAGAGAT 59.603 33.333 0.00 0.00 38.69 2.75
1361 1426 6.909550 ACAAGCATGTGGGTTTTAATTAGA 57.090 33.333 0.00 0.00 38.69 2.10
1362 1427 9.482627 TTTTACAAGCATGTGGGTTTTAATTAG 57.517 29.630 4.51 0.00 40.84 1.73
1363 1428 9.262358 GTTTTACAAGCATGTGGGTTTTAATTA 57.738 29.630 4.51 0.00 40.84 1.40
1365 1430 6.708502 GGTTTTACAAGCATGTGGGTTTTAAT 59.291 34.615 4.51 0.00 40.84 1.40
1366 1431 6.049790 GGTTTTACAAGCATGTGGGTTTTAA 58.950 36.000 4.51 0.00 40.84 1.52
1369 1434 3.181459 GGGTTTTACAAGCATGTGGGTTT 60.181 43.478 4.51 0.00 40.84 3.27
1370 1435 2.367241 GGGTTTTACAAGCATGTGGGTT 59.633 45.455 4.51 0.00 40.84 4.11
1371 1436 1.967779 GGGTTTTACAAGCATGTGGGT 59.032 47.619 4.51 0.00 40.84 4.51
1372 1437 1.067915 CGGGTTTTACAAGCATGTGGG 60.068 52.381 4.51 0.00 40.84 4.61
1373 1438 1.611491 ACGGGTTTTACAAGCATGTGG 59.389 47.619 4.51 0.00 40.84 4.17
1374 1439 4.695217 ATACGGGTTTTACAAGCATGTG 57.305 40.909 4.51 0.00 40.84 3.21
1375 1440 6.349528 GGTTTATACGGGTTTTACAAGCATGT 60.350 38.462 0.00 0.00 43.74 3.21
1376 1441 6.031471 GGTTTATACGGGTTTTACAAGCATG 58.969 40.000 0.00 0.00 31.46 4.06
1377 1442 5.947566 AGGTTTATACGGGTTTTACAAGCAT 59.052 36.000 0.00 0.00 31.46 3.79
1378 1443 5.315348 AGGTTTATACGGGTTTTACAAGCA 58.685 37.500 0.00 0.00 31.46 3.91
1379 1444 5.885230 AGGTTTATACGGGTTTTACAAGC 57.115 39.130 0.00 0.00 0.00 4.01
1380 1445 8.496707 ACATAGGTTTATACGGGTTTTACAAG 57.503 34.615 0.00 0.00 0.00 3.16
1382 1447 9.545105 CATACATAGGTTTATACGGGTTTTACA 57.455 33.333 0.00 0.00 0.00 2.41
1383 1448 9.546428 ACATACATAGGTTTATACGGGTTTTAC 57.454 33.333 0.00 0.00 0.00 2.01
1384 1449 9.545105 CACATACATAGGTTTATACGGGTTTTA 57.455 33.333 0.00 0.00 0.00 1.52
1385 1450 8.048514 ACACATACATAGGTTTATACGGGTTTT 58.951 33.333 0.00 0.00 0.00 2.43
1386 1451 7.496591 CACACATACATAGGTTTATACGGGTTT 59.503 37.037 0.00 0.00 0.00 3.27
1387 1452 6.987992 CACACATACATAGGTTTATACGGGTT 59.012 38.462 0.00 0.00 0.00 4.11
1388 1453 6.463331 CCACACATACATAGGTTTATACGGGT 60.463 42.308 0.00 0.00 0.00 5.28
1389 1454 5.929992 CCACACATACATAGGTTTATACGGG 59.070 44.000 0.00 0.00 0.00 5.28
1390 1455 5.407387 GCCACACATACATAGGTTTATACGG 59.593 44.000 0.00 0.00 0.00 4.02
1391 1456 5.986741 TGCCACACATACATAGGTTTATACG 59.013 40.000 0.00 0.00 0.00 3.06
1392 1457 7.979444 ATGCCACACATACATAGGTTTATAC 57.021 36.000 0.00 0.00 37.17 1.47
1393 1458 9.496873 GTAATGCCACACATACATAGGTTTATA 57.503 33.333 0.00 0.00 38.34 0.98
1394 1459 8.217799 AGTAATGCCACACATACATAGGTTTAT 58.782 33.333 0.00 0.00 38.34 1.40
1395 1460 7.570132 AGTAATGCCACACATACATAGGTTTA 58.430 34.615 0.00 0.00 38.34 2.01
1396 1461 6.423182 AGTAATGCCACACATACATAGGTTT 58.577 36.000 0.00 0.00 38.34 3.27
1397 1462 6.001449 AGTAATGCCACACATACATAGGTT 57.999 37.500 0.00 0.00 38.34 3.50
1398 1463 5.611374 GAGTAATGCCACACATACATAGGT 58.389 41.667 0.00 0.00 38.34 3.08
1399 1464 4.686091 CGAGTAATGCCACACATACATAGG 59.314 45.833 0.00 0.00 38.34 2.57
1400 1465 5.289595 ACGAGTAATGCCACACATACATAG 58.710 41.667 0.00 0.00 38.34 2.23
1401 1466 5.270893 ACGAGTAATGCCACACATACATA 57.729 39.130 0.00 0.00 38.34 2.29
1402 1467 4.119862 GACGAGTAATGCCACACATACAT 58.880 43.478 0.00 0.00 38.34 2.29
1403 1468 3.517602 GACGAGTAATGCCACACATACA 58.482 45.455 0.00 0.00 38.34 2.29
1410 1475 1.369625 CCTTGGACGAGTAATGCCAC 58.630 55.000 0.00 0.00 0.00 5.01
1422 1487 1.003580 TCAATCCACTGAGCCTTGGAC 59.996 52.381 0.00 0.00 44.80 4.02
1423 1488 1.280133 CTCAATCCACTGAGCCTTGGA 59.720 52.381 0.00 0.00 46.06 3.53
1424 1489 1.280133 TCTCAATCCACTGAGCCTTGG 59.720 52.381 0.00 0.00 42.25 3.61
1425 1490 2.027377 AGTCTCAATCCACTGAGCCTTG 60.027 50.000 0.00 0.00 42.25 3.61
1426 1491 2.264455 AGTCTCAATCCACTGAGCCTT 58.736 47.619 0.00 0.00 42.25 4.35
1427 1492 1.949799 AGTCTCAATCCACTGAGCCT 58.050 50.000 0.00 0.00 42.25 4.58
1428 1493 2.027745 TCAAGTCTCAATCCACTGAGCC 60.028 50.000 0.00 0.00 42.25 4.70
1429 1494 3.325293 TCAAGTCTCAATCCACTGAGC 57.675 47.619 0.00 0.00 42.25 4.26
1430 1495 8.420222 AGTATTATCAAGTCTCAATCCACTGAG 58.580 37.037 0.00 0.00 43.62 3.35
1431 1496 8.311395 AGTATTATCAAGTCTCAATCCACTGA 57.689 34.615 0.00 0.00 0.00 3.41
1432 1497 9.689976 CTAGTATTATCAAGTCTCAATCCACTG 57.310 37.037 0.00 0.00 0.00 3.66
1433 1498 9.647918 TCTAGTATTATCAAGTCTCAATCCACT 57.352 33.333 0.00 0.00 0.00 4.00
1434 1499 9.685828 GTCTAGTATTATCAAGTCTCAATCCAC 57.314 37.037 0.00 0.00 0.00 4.02
1435 1500 8.861086 GGTCTAGTATTATCAAGTCTCAATCCA 58.139 37.037 0.00 0.00 0.00 3.41
1436 1501 9.084533 AGGTCTAGTATTATCAAGTCTCAATCC 57.915 37.037 0.00 0.00 0.00 3.01
1443 1508 9.828852 CGTTCATAGGTCTAGTATTATCAAGTC 57.171 37.037 0.00 0.00 0.00 3.01
1444 1509 9.570468 TCGTTCATAGGTCTAGTATTATCAAGT 57.430 33.333 0.00 0.00 0.00 3.16
1454 1519 9.367444 CTTTGTAAAATCGTTCATAGGTCTAGT 57.633 33.333 0.00 0.00 0.00 2.57
1455 1520 8.328864 GCTTTGTAAAATCGTTCATAGGTCTAG 58.671 37.037 0.00 0.00 0.00 2.43
1456 1521 8.038944 AGCTTTGTAAAATCGTTCATAGGTCTA 58.961 33.333 0.00 0.00 0.00 2.59
1457 1522 6.879458 AGCTTTGTAAAATCGTTCATAGGTCT 59.121 34.615 0.00 0.00 0.00 3.85
1458 1523 7.073342 AGCTTTGTAAAATCGTTCATAGGTC 57.927 36.000 0.00 0.00 0.00 3.85
1459 1524 7.448748 AAGCTTTGTAAAATCGTTCATAGGT 57.551 32.000 0.00 0.00 0.00 3.08
1486 1551 9.895138 AGAAGGTTTAGTTGTTAGAAAGTTACA 57.105 29.630 0.00 0.00 0.00 2.41
1488 1553 9.551734 GGAGAAGGTTTAGTTGTTAGAAAGTTA 57.448 33.333 0.00 0.00 0.00 2.24
1489 1554 7.501559 GGGAGAAGGTTTAGTTGTTAGAAAGTT 59.498 37.037 0.00 0.00 0.00 2.66
1490 1555 6.996879 GGGAGAAGGTTTAGTTGTTAGAAAGT 59.003 38.462 0.00 0.00 0.00 2.66
1491 1556 6.430308 GGGGAGAAGGTTTAGTTGTTAGAAAG 59.570 42.308 0.00 0.00 0.00 2.62
1492 1557 6.301486 GGGGAGAAGGTTTAGTTGTTAGAAA 58.699 40.000 0.00 0.00 0.00 2.52
1493 1558 5.221986 GGGGGAGAAGGTTTAGTTGTTAGAA 60.222 44.000 0.00 0.00 0.00 2.10
1494 1559 4.287845 GGGGGAGAAGGTTTAGTTGTTAGA 59.712 45.833 0.00 0.00 0.00 2.10
1495 1560 4.586884 GGGGGAGAAGGTTTAGTTGTTAG 58.413 47.826 0.00 0.00 0.00 2.34
1496 1561 4.645863 GGGGGAGAAGGTTTAGTTGTTA 57.354 45.455 0.00 0.00 0.00 2.41
1497 1562 3.520691 GGGGGAGAAGGTTTAGTTGTT 57.479 47.619 0.00 0.00 0.00 2.83
1921 1986 9.561069 CCTGTAAAAACCTATATGTCTAGCATT 57.439 33.333 5.22 0.00 38.94 3.56
1922 1987 7.661847 GCCTGTAAAAACCTATATGTCTAGCAT 59.338 37.037 5.25 5.25 41.42 3.79
1923 1988 6.990349 GCCTGTAAAAACCTATATGTCTAGCA 59.010 38.462 0.00 0.00 0.00 3.49
1924 1989 7.217906 AGCCTGTAAAAACCTATATGTCTAGC 58.782 38.462 0.00 0.00 0.00 3.42
1925 1990 7.873505 GGAGCCTGTAAAAACCTATATGTCTAG 59.126 40.741 0.00 0.00 0.00 2.43
1926 1991 7.567622 AGGAGCCTGTAAAAACCTATATGTCTA 59.432 37.037 0.00 0.00 0.00 2.59
1927 1992 6.387220 AGGAGCCTGTAAAAACCTATATGTCT 59.613 38.462 0.00 0.00 0.00 3.41
1928 1993 6.592870 AGGAGCCTGTAAAAACCTATATGTC 58.407 40.000 0.00 0.00 0.00 3.06
1929 1994 6.409349 GGAGGAGCCTGTAAAAACCTATATGT 60.409 42.308 0.00 0.00 0.00 2.29
1930 1995 5.998363 GGAGGAGCCTGTAAAAACCTATATG 59.002 44.000 0.00 0.00 0.00 1.78
1931 1996 5.073280 GGGAGGAGCCTGTAAAAACCTATAT 59.927 44.000 0.00 0.00 36.66 0.86
1932 1997 4.411212 GGGAGGAGCCTGTAAAAACCTATA 59.589 45.833 0.00 0.00 36.66 1.31
1933 1998 3.202373 GGGAGGAGCCTGTAAAAACCTAT 59.798 47.826 0.00 0.00 36.66 2.57
1934 1999 2.574824 GGGAGGAGCCTGTAAAAACCTA 59.425 50.000 0.00 0.00 36.66 3.08
1935 2000 1.354705 GGGAGGAGCCTGTAAAAACCT 59.645 52.381 0.00 0.00 36.66 3.50
1936 2001 1.074889 TGGGAGGAGCCTGTAAAAACC 59.925 52.381 0.00 0.00 36.66 3.27
1937 2002 2.557056 GTTGGGAGGAGCCTGTAAAAAC 59.443 50.000 0.00 0.00 36.66 2.43
1938 2003 2.445525 AGTTGGGAGGAGCCTGTAAAAA 59.554 45.455 0.00 0.00 36.66 1.94
1939 2004 2.062636 AGTTGGGAGGAGCCTGTAAAA 58.937 47.619 0.00 0.00 36.66 1.52
1940 2005 1.742308 AGTTGGGAGGAGCCTGTAAA 58.258 50.000 0.00 0.00 36.66 2.01
1941 2006 1.742308 AAGTTGGGAGGAGCCTGTAA 58.258 50.000 0.00 0.00 36.66 2.41
1942 2007 1.628846 GAAAGTTGGGAGGAGCCTGTA 59.371 52.381 0.00 0.00 36.66 2.74
1943 2008 0.402121 GAAAGTTGGGAGGAGCCTGT 59.598 55.000 0.00 0.00 36.66 4.00
1944 2009 0.695347 AGAAAGTTGGGAGGAGCCTG 59.305 55.000 0.00 0.00 36.66 4.85
1945 2010 2.344093 TAGAAAGTTGGGAGGAGCCT 57.656 50.000 0.00 0.00 36.66 4.58
1946 2011 3.434940 TTTAGAAAGTTGGGAGGAGCC 57.565 47.619 0.00 0.00 0.00 4.70
1947 2012 4.336280 ACATTTAGAAAGTTGGGAGGAGC 58.664 43.478 0.00 0.00 0.00 4.70
1948 2013 6.681777 CAAACATTTAGAAAGTTGGGAGGAG 58.318 40.000 0.00 0.00 0.00 3.69
1949 2014 5.010617 GCAAACATTTAGAAAGTTGGGAGGA 59.989 40.000 0.00 0.00 0.00 3.71
1950 2015 5.011023 AGCAAACATTTAGAAAGTTGGGAGG 59.989 40.000 0.00 0.00 0.00 4.30
1951 2016 5.922544 CAGCAAACATTTAGAAAGTTGGGAG 59.077 40.000 0.00 0.00 0.00 4.30
1952 2017 5.738783 GCAGCAAACATTTAGAAAGTTGGGA 60.739 40.000 0.00 0.00 0.00 4.37
1953 2018 4.448732 GCAGCAAACATTTAGAAAGTTGGG 59.551 41.667 0.00 0.00 0.00 4.12
1954 2019 4.448732 GGCAGCAAACATTTAGAAAGTTGG 59.551 41.667 0.00 0.00 0.00 3.77
1955 2020 4.448732 GGGCAGCAAACATTTAGAAAGTTG 59.551 41.667 0.00 0.00 0.00 3.16
1956 2021 4.344968 AGGGCAGCAAACATTTAGAAAGTT 59.655 37.500 0.00 0.00 0.00 2.66
1957 2022 3.897505 AGGGCAGCAAACATTTAGAAAGT 59.102 39.130 0.00 0.00 0.00 2.66
1958 2023 4.525912 AGGGCAGCAAACATTTAGAAAG 57.474 40.909 0.00 0.00 0.00 2.62
1959 2024 6.014669 ACAATAGGGCAGCAAACATTTAGAAA 60.015 34.615 0.00 0.00 0.00 2.52
1960 2025 5.480073 ACAATAGGGCAGCAAACATTTAGAA 59.520 36.000 0.00 0.00 0.00 2.10
1961 2026 5.016173 ACAATAGGGCAGCAAACATTTAGA 58.984 37.500 0.00 0.00 0.00 2.10
1962 2027 5.329035 ACAATAGGGCAGCAAACATTTAG 57.671 39.130 0.00 0.00 0.00 1.85
1963 2028 5.736951 AACAATAGGGCAGCAAACATTTA 57.263 34.783 0.00 0.00 0.00 1.40
1964 2029 4.622260 AACAATAGGGCAGCAAACATTT 57.378 36.364 0.00 0.00 0.00 2.32
1965 2030 4.202346 ACAAACAATAGGGCAGCAAACATT 60.202 37.500 0.00 0.00 0.00 2.71
1966 2031 3.324556 ACAAACAATAGGGCAGCAAACAT 59.675 39.130 0.00 0.00 0.00 2.71
1967 2032 2.697751 ACAAACAATAGGGCAGCAAACA 59.302 40.909 0.00 0.00 0.00 2.83
1968 2033 3.059166 CACAAACAATAGGGCAGCAAAC 58.941 45.455 0.00 0.00 0.00 2.93
1969 2034 2.961741 TCACAAACAATAGGGCAGCAAA 59.038 40.909 0.00 0.00 0.00 3.68
1970 2035 2.591923 TCACAAACAATAGGGCAGCAA 58.408 42.857 0.00 0.00 0.00 3.91
1971 2036 2.284754 TCACAAACAATAGGGCAGCA 57.715 45.000 0.00 0.00 0.00 4.41
1972 2037 3.874392 AATCACAAACAATAGGGCAGC 57.126 42.857 0.00 0.00 0.00 5.25
1973 2038 6.458210 AGAAAAATCACAAACAATAGGGCAG 58.542 36.000 0.00 0.00 0.00 4.85
1978 2043 9.919348 CCAACAAAGAAAAATCACAAACAATAG 57.081 29.630 0.00 0.00 0.00 1.73
1981 2046 7.659390 AGTCCAACAAAGAAAAATCACAAACAA 59.341 29.630 0.00 0.00 0.00 2.83
1982 2047 7.158021 AGTCCAACAAAGAAAAATCACAAACA 58.842 30.769 0.00 0.00 0.00 2.83
1999 2064 3.882888 CTGAGCCTACAAAAAGTCCAACA 59.117 43.478 0.00 0.00 0.00 3.33
2005 2070 5.066505 CACAGAAACTGAGCCTACAAAAAGT 59.933 40.000 5.76 0.00 35.18 2.66
2058 2306 2.880268 CACAAGAACTCAGCCAATGACA 59.120 45.455 0.00 0.00 33.22 3.58
2108 2356 5.577164 GTGCATCAGTACACTTAGTAGTTGG 59.423 44.000 0.00 0.00 34.09 3.77
2126 2374 1.426621 CACCATCGTGCTGTGCATC 59.573 57.895 0.00 0.00 41.91 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.