Multiple sequence alignment - TraesCS2D01G017200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G017200 chr2D 100.000 2261 0 0 1 2261 8326680 8328940 0.000000e+00 4176.0
1 TraesCS2D01G017200 chr2D 94.118 34 2 0 633 666 8477491 8477458 4.000000e-03 52.8
2 TraesCS2D01G017200 chr2A 89.889 722 36 12 687 1399 7328983 7329676 0.000000e+00 894.0
3 TraesCS2D01G017200 chr2A 91.688 385 23 6 1883 2258 7360923 7361307 1.990000e-145 525.0
4 TraesCS2D01G017200 chr2A 92.667 300 16 3 1554 1848 7329721 7330019 5.770000e-116 427.0
5 TraesCS2D01G017200 chr2A 81.918 365 27 12 85 432 7328072 7328414 2.860000e-69 272.0
6 TraesCS2D01G017200 chr2B 86.172 781 49 26 722 1478 4721061 4721806 0.000000e+00 789.0
7 TraesCS2D01G017200 chr2B 83.721 602 71 15 68 658 4720374 4720959 5.490000e-151 544.0
8 TraesCS2D01G017200 chr2B 92.095 253 13 6 2015 2261 4722116 4722367 1.290000e-92 350.0
9 TraesCS2D01G017200 chr2B 84.332 217 30 3 972 1186 490790237 490790023 2.280000e-50 209.0
10 TraesCS2D01G017200 chrUn 88.372 86 10 0 804 889 170193050 170193135 1.100000e-18 104.0
11 TraesCS2D01G017200 chr5A 100.000 34 0 0 640 673 37594215 37594182 1.870000e-06 63.9
12 TraesCS2D01G017200 chr6A 97.222 36 0 1 639 673 223409443 223409478 2.430000e-05 60.2
13 TraesCS2D01G017200 chr6A 94.286 35 2 0 639 673 330136458 330136492 1.000000e-03 54.7
14 TraesCS2D01G017200 chr5B 94.595 37 1 1 638 673 679323099 679323063 3.140000e-04 56.5
15 TraesCS2D01G017200 chr3D 97.059 34 0 1 641 673 263354727 263354694 3.140000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G017200 chr2D 8326680 8328940 2260 False 4176 4176 100.000000 1 2261 1 chr2D.!!$F1 2260
1 TraesCS2D01G017200 chr2A 7328072 7330019 1947 False 531 894 88.158000 85 1848 3 chr2A.!!$F2 1763
2 TraesCS2D01G017200 chr2B 4720374 4722367 1993 False 561 789 87.329333 68 2261 3 chr2B.!!$F1 2193

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 1105 0.035458 CTCCCTCCGTCCCATAATGC 59.965 60.0 0.0 0.0 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1673 2211 0.103572 TTAGCCGGTCTTACGCATCC 59.896 55.0 1.9 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.363080 GCTAGGTAGCCAGCGTACC 59.637 63.158 0.00 9.11 43.39 3.34
23 24 1.389609 GCTAGGTAGCCAGCGTACCA 61.390 60.000 15.84 6.03 42.28 3.25
24 25 0.669077 CTAGGTAGCCAGCGTACCAG 59.331 60.000 15.84 9.90 42.28 4.00
25 26 1.389609 TAGGTAGCCAGCGTACCAGC 61.390 60.000 15.84 0.00 42.28 4.85
26 27 2.577059 GTAGCCAGCGTACCAGCA 59.423 61.111 0.00 0.00 40.15 4.41
27 28 1.519455 GTAGCCAGCGTACCAGCAG 60.519 63.158 0.00 0.00 40.15 4.24
28 29 1.680989 TAGCCAGCGTACCAGCAGA 60.681 57.895 0.00 0.00 40.15 4.26
29 30 1.254975 TAGCCAGCGTACCAGCAGAA 61.255 55.000 0.00 0.00 40.15 3.02
30 31 1.671054 GCCAGCGTACCAGCAGAAA 60.671 57.895 0.00 0.00 40.15 2.52
31 32 1.639298 GCCAGCGTACCAGCAGAAAG 61.639 60.000 0.00 0.00 40.15 2.62
32 33 0.037326 CCAGCGTACCAGCAGAAAGA 60.037 55.000 0.00 0.00 40.15 2.52
33 34 1.354040 CAGCGTACCAGCAGAAAGAG 58.646 55.000 0.00 0.00 40.15 2.85
34 35 1.067565 CAGCGTACCAGCAGAAAGAGA 60.068 52.381 0.00 0.00 40.15 3.10
35 36 1.067495 AGCGTACCAGCAGAAAGAGAC 60.067 52.381 0.00 0.00 40.15 3.36
36 37 1.618861 CGTACCAGCAGAAAGAGACG 58.381 55.000 0.00 0.00 0.00 4.18
37 38 1.068472 CGTACCAGCAGAAAGAGACGT 60.068 52.381 0.00 0.00 0.00 4.34
38 39 2.597520 GTACCAGCAGAAAGAGACGTC 58.402 52.381 7.70 7.70 0.00 4.34
39 40 0.039074 ACCAGCAGAAAGAGACGTCG 60.039 55.000 10.46 0.00 0.00 5.12
40 41 0.241213 CCAGCAGAAAGAGACGTCGA 59.759 55.000 10.46 0.00 0.00 4.20
41 42 1.332178 CAGCAGAAAGAGACGTCGAC 58.668 55.000 10.46 5.18 0.00 4.20
42 43 0.110147 AGCAGAAAGAGACGTCGACG 60.110 55.000 34.58 34.58 46.33 5.12
43 44 1.066114 GCAGAAAGAGACGTCGACGG 61.066 60.000 37.89 21.83 44.95 4.79
44 45 0.237761 CAGAAAGAGACGTCGACGGT 59.762 55.000 37.89 26.36 44.95 4.83
45 46 0.237761 AGAAAGAGACGTCGACGGTG 59.762 55.000 37.89 14.82 44.95 4.94
46 47 0.236711 GAAAGAGACGTCGACGGTGA 59.763 55.000 37.89 0.00 44.95 4.02
47 48 0.040603 AAAGAGACGTCGACGGTGAC 60.041 55.000 37.89 25.24 44.95 3.67
48 49 0.883814 AAGAGACGTCGACGGTGACT 60.884 55.000 37.89 28.76 44.95 3.41
49 50 1.132232 GAGACGTCGACGGTGACTC 59.868 63.158 37.89 31.10 44.95 3.36
50 51 2.175322 GACGTCGACGGTGACTCC 59.825 66.667 37.89 15.82 44.95 3.85
51 52 2.281345 ACGTCGACGGTGACTCCT 60.281 61.111 37.89 14.95 44.95 3.69
52 53 1.849976 GACGTCGACGGTGACTCCTT 61.850 60.000 37.89 16.78 44.95 3.36
53 54 1.154263 CGTCGACGGTGACTCCTTC 60.154 63.158 29.70 0.00 36.71 3.46
54 55 1.212229 GTCGACGGTGACTCCTTCC 59.788 63.158 0.00 0.00 35.95 3.46
55 56 1.074423 TCGACGGTGACTCCTTCCT 59.926 57.895 0.00 0.00 31.67 3.36
56 57 0.538977 TCGACGGTGACTCCTTCCTT 60.539 55.000 0.00 0.00 31.67 3.36
57 58 1.171308 CGACGGTGACTCCTTCCTTA 58.829 55.000 0.00 0.00 31.67 2.69
58 59 1.135460 CGACGGTGACTCCTTCCTTAC 60.135 57.143 0.00 0.00 31.67 2.34
59 60 2.169330 GACGGTGACTCCTTCCTTACT 58.831 52.381 0.00 0.00 0.00 2.24
60 61 3.350833 GACGGTGACTCCTTCCTTACTA 58.649 50.000 0.00 0.00 0.00 1.82
61 62 3.354467 ACGGTGACTCCTTCCTTACTAG 58.646 50.000 0.00 0.00 0.00 2.57
62 63 3.245193 ACGGTGACTCCTTCCTTACTAGT 60.245 47.826 0.00 0.00 0.00 2.57
63 64 3.128938 CGGTGACTCCTTCCTTACTAGTG 59.871 52.174 5.39 0.00 0.00 2.74
64 65 3.119065 GGTGACTCCTTCCTTACTAGTGC 60.119 52.174 5.39 0.00 0.00 4.40
65 66 2.753452 TGACTCCTTCCTTACTAGTGCG 59.247 50.000 5.39 0.00 0.00 5.34
66 67 2.754002 GACTCCTTCCTTACTAGTGCGT 59.246 50.000 5.39 0.00 0.00 5.24
67 68 2.492484 ACTCCTTCCTTACTAGTGCGTG 59.508 50.000 5.39 0.00 0.00 5.34
68 69 1.822990 TCCTTCCTTACTAGTGCGTGG 59.177 52.381 5.39 2.46 0.00 4.94
69 70 1.549170 CCTTCCTTACTAGTGCGTGGT 59.451 52.381 5.39 0.00 0.00 4.16
70 71 2.607187 CTTCCTTACTAGTGCGTGGTG 58.393 52.381 5.39 0.00 0.00 4.17
71 72 1.913778 TCCTTACTAGTGCGTGGTGA 58.086 50.000 5.39 0.00 0.00 4.02
72 73 2.241160 TCCTTACTAGTGCGTGGTGAA 58.759 47.619 5.39 0.00 0.00 3.18
73 74 2.230508 TCCTTACTAGTGCGTGGTGAAG 59.769 50.000 5.39 0.00 0.00 3.02
74 75 1.993370 CTTACTAGTGCGTGGTGAAGC 59.007 52.381 5.39 0.00 0.00 3.86
75 76 0.245539 TACTAGTGCGTGGTGAAGCC 59.754 55.000 5.39 0.00 37.90 4.35
76 77 1.005037 CTAGTGCGTGGTGAAGCCA 60.005 57.895 0.00 0.00 46.95 4.75
92 93 2.741985 CACGGCCATCGCACTCAA 60.742 61.111 2.24 0.00 43.89 3.02
95 96 2.169789 CGGCCATCGCACTCAAGAG 61.170 63.158 2.24 0.00 36.38 2.85
96 97 1.817099 GGCCATCGCACTCAAGAGG 60.817 63.158 0.00 0.00 36.38 3.69
117 118 0.108992 GACAGCATGCACAACCCATG 60.109 55.000 21.98 9.14 42.53 3.66
118 119 0.540133 ACAGCATGCACAACCCATGA 60.540 50.000 21.98 0.00 42.53 3.07
134 141 1.649171 CATGACGTTAGCTCGTGACAC 59.351 52.381 5.05 0.00 44.21 3.67
168 175 2.331451 GCGCGCCTGAAAAACAGT 59.669 55.556 23.24 0.00 44.40 3.55
170 177 1.082104 CGCGCCTGAAAAACAGTCC 60.082 57.895 0.00 0.00 44.40 3.85
175 182 1.235724 CCTGAAAAACAGTCCGGGAC 58.764 55.000 19.61 19.61 44.40 4.46
202 209 1.872653 GCTCCGGCCGTCCTTAAATAG 60.873 57.143 26.12 4.17 0.00 1.73
242 257 0.600255 CCACTCACACAAGTCCGGTC 60.600 60.000 0.00 0.00 0.00 4.79
243 258 0.939577 CACTCACACAAGTCCGGTCG 60.940 60.000 0.00 0.00 0.00 4.79
245 260 2.083835 CTCACACAAGTCCGGTCGGT 62.084 60.000 9.36 0.00 36.47 4.69
246 261 1.954146 CACACAAGTCCGGTCGGTG 60.954 63.158 19.12 19.12 36.47 4.94
247 262 2.129146 ACACAAGTCCGGTCGGTGA 61.129 57.895 24.53 0.00 36.47 4.02
248 263 1.372997 CACAAGTCCGGTCGGTGAG 60.373 63.158 16.99 5.03 36.47 3.51
249 264 2.432628 CAAGTCCGGTCGGTGAGC 60.433 66.667 9.36 0.00 36.47 4.26
412 435 1.632269 ATCCCTCCCTCCCACCCTA 60.632 63.158 0.00 0.00 0.00 3.53
416 439 1.704082 CTCCCTCCCACCCTACTGA 59.296 63.158 0.00 0.00 0.00 3.41
475 912 1.068748 GTGATGAGCAGCACAAAGTGG 60.069 52.381 13.40 0.00 46.12 4.00
482 919 2.233431 AGCAGCACAAAGTGGTTTTTCA 59.767 40.909 0.00 0.00 41.72 2.69
499 938 2.904011 TCAAACACACACGTTGGTTC 57.096 45.000 0.00 0.00 0.00 3.62
505 944 2.285756 ACACACACGTTGGTTCATTACG 59.714 45.455 0.00 0.00 40.85 3.18
517 956 1.210870 TCATTACGCGGCGGTAAATC 58.789 50.000 27.37 0.00 36.10 2.17
527 966 2.544277 CGGCGGTAAATCTGGTTATCGA 60.544 50.000 0.00 0.00 39.44 3.59
554 997 2.675772 GGACGTCCGGACCTCACT 60.676 66.667 28.52 6.06 0.00 3.41
555 998 2.567049 GACGTCCGGACCTCACTG 59.433 66.667 28.52 15.62 0.00 3.66
556 999 3.628280 GACGTCCGGACCTCACTGC 62.628 68.421 28.52 6.60 0.00 4.40
557 1000 3.374402 CGTCCGGACCTCACTGCT 61.374 66.667 28.52 0.00 0.00 4.24
558 1001 2.044555 CGTCCGGACCTCACTGCTA 61.045 63.158 28.52 0.00 0.00 3.49
559 1002 1.810532 GTCCGGACCTCACTGCTAG 59.189 63.158 24.75 0.00 0.00 3.42
595 1038 3.831715 AAAGCAGATACCGAGCAAAAC 57.168 42.857 0.00 0.00 0.00 2.43
596 1039 2.472695 AGCAGATACCGAGCAAAACA 57.527 45.000 0.00 0.00 0.00 2.83
604 1048 6.088085 CAGATACCGAGCAAAACAATGTTTTC 59.912 38.462 19.89 14.56 0.00 2.29
648 1092 2.561478 TGCCAAACTTGTACTCCCTC 57.439 50.000 0.00 0.00 0.00 4.30
651 1095 1.346722 CCAAACTTGTACTCCCTCCGT 59.653 52.381 0.00 0.00 0.00 4.69
652 1096 2.612221 CCAAACTTGTACTCCCTCCGTC 60.612 54.545 0.00 0.00 0.00 4.79
658 1102 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
660 1104 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
661 1105 0.035458 CTCCCTCCGTCCCATAATGC 59.965 60.000 0.00 0.00 0.00 3.56
662 1106 0.692756 TCCCTCCGTCCCATAATGCA 60.693 55.000 0.00 0.00 0.00 3.96
663 1107 0.182537 CCCTCCGTCCCATAATGCAA 59.817 55.000 0.00 0.00 0.00 4.08
665 1109 1.140852 CCTCCGTCCCATAATGCAAGA 59.859 52.381 0.00 0.00 0.00 3.02
666 1110 2.224621 CCTCCGTCCCATAATGCAAGAT 60.225 50.000 0.00 0.00 0.00 2.40
667 1111 2.810274 CTCCGTCCCATAATGCAAGATG 59.190 50.000 0.00 0.00 0.00 2.90
668 1112 2.172505 TCCGTCCCATAATGCAAGATGT 59.827 45.455 9.60 0.00 0.00 3.06
670 1114 3.381272 CCGTCCCATAATGCAAGATGTTT 59.619 43.478 9.60 0.00 0.00 2.83
671 1115 4.142182 CCGTCCCATAATGCAAGATGTTTT 60.142 41.667 9.60 0.00 0.00 2.43
672 1116 5.410067 CGTCCCATAATGCAAGATGTTTTT 58.590 37.500 9.60 0.00 0.00 1.94
673 1117 5.516339 CGTCCCATAATGCAAGATGTTTTTC 59.484 40.000 9.60 0.00 0.00 2.29
674 1118 5.812127 GTCCCATAATGCAAGATGTTTTTCC 59.188 40.000 9.60 0.00 0.00 3.13
676 1120 6.013898 TCCCATAATGCAAGATGTTTTTCCAA 60.014 34.615 9.60 0.00 0.00 3.53
677 1121 6.314400 CCCATAATGCAAGATGTTTTTCCAAG 59.686 38.462 9.60 0.00 0.00 3.61
678 1122 6.183360 CCATAATGCAAGATGTTTTTCCAAGC 60.183 38.462 9.60 0.00 0.00 4.01
681 1125 5.726980 TGCAAGATGTTTTTCCAAGCTAT 57.273 34.783 0.00 0.00 0.00 2.97
683 1127 6.855836 TGCAAGATGTTTTTCCAAGCTATAG 58.144 36.000 0.00 0.00 0.00 1.31
685 1129 7.609918 TGCAAGATGTTTTTCCAAGCTATAGTA 59.390 33.333 0.84 0.00 0.00 1.82
686 1130 8.125448 GCAAGATGTTTTTCCAAGCTATAGTAG 58.875 37.037 0.84 0.00 0.00 2.57
687 1131 9.167311 CAAGATGTTTTTCCAAGCTATAGTAGT 57.833 33.333 0.84 0.00 0.00 2.73
689 1133 9.384764 AGATGTTTTTCCAAGCTATAGTAGTTC 57.615 33.333 0.84 0.00 0.00 3.01
691 1135 8.911918 TGTTTTTCCAAGCTATAGTAGTTCAA 57.088 30.769 0.84 0.00 0.00 2.69
692 1136 9.344772 TGTTTTTCCAAGCTATAGTAGTTCAAA 57.655 29.630 0.84 0.00 0.00 2.69
698 1142 9.733556 TCCAAGCTATAGTAGTTCAAAATTTGA 57.266 29.630 4.03 4.03 38.04 2.69
720 1164 9.841295 TTTGAATTTAAACACTAGACCTGTAGT 57.159 29.630 0.00 0.00 33.25 2.73
732 1213 9.097257 CACTAGACCTGTAGTAGTAAGTAGTTC 57.903 40.741 0.00 0.00 31.73 3.01
793 1277 2.230750 AGTCTTGGCGTAGTGGTAAGAC 59.769 50.000 0.00 0.00 44.56 3.01
837 1321 1.961277 CTTCTTCTGCCCGTGCGTT 60.961 57.895 0.00 0.00 41.78 4.84
876 1360 1.080705 GATCGTCGATAAGGGGGCG 60.081 63.158 7.93 0.00 0.00 6.13
891 1375 2.156098 GGGGCGACATGTGAGTTTTTA 58.844 47.619 1.15 0.00 0.00 1.52
892 1376 2.554893 GGGGCGACATGTGAGTTTTTAA 59.445 45.455 1.15 0.00 0.00 1.52
894 1378 4.321675 GGGGCGACATGTGAGTTTTTAATT 60.322 41.667 1.15 0.00 0.00 1.40
896 1380 5.344933 GGGCGACATGTGAGTTTTTAATTTC 59.655 40.000 1.15 0.00 0.00 2.17
898 1382 7.302524 GGCGACATGTGAGTTTTTAATTTCTA 58.697 34.615 1.15 0.00 0.00 2.10
899 1383 7.968405 GGCGACATGTGAGTTTTTAATTTCTAT 59.032 33.333 1.15 0.00 0.00 1.98
900 1384 9.982291 GCGACATGTGAGTTTTTAATTTCTATA 57.018 29.630 1.15 0.00 0.00 1.31
1033 1517 3.151710 CGACGGGGATAGGCACCA 61.152 66.667 0.00 0.00 41.62 4.17
1203 1687 2.123726 GCGGGATGGGAAGCCAAT 60.124 61.111 0.00 0.00 0.00 3.16
1291 1776 3.124578 TGCAGTGCACACTTCTATTCA 57.875 42.857 21.04 0.00 40.20 2.57
1368 1879 6.575162 ATGTGTTAGTGAACCCTCAAAATC 57.425 37.500 0.00 0.00 34.38 2.17
1369 1880 5.441500 TGTGTTAGTGAACCCTCAAAATCA 58.558 37.500 0.00 0.00 34.38 2.57
1370 1881 5.888724 TGTGTTAGTGAACCCTCAAAATCAA 59.111 36.000 0.00 0.00 34.38 2.57
1371 1882 6.378564 TGTGTTAGTGAACCCTCAAAATCAAA 59.621 34.615 0.00 0.00 34.38 2.69
1372 1883 7.093727 TGTGTTAGTGAACCCTCAAAATCAAAA 60.094 33.333 0.00 0.00 34.38 2.44
1373 1884 7.926018 GTGTTAGTGAACCCTCAAAATCAAAAT 59.074 33.333 0.00 0.00 34.38 1.82
1399 1910 3.616219 AGTGTGCAAGTGTGTTTTCCTA 58.384 40.909 0.00 0.00 0.00 2.94
1412 1923 5.163602 TGTGTTTTCCTATTGCAAGACGTTT 60.164 36.000 4.94 0.00 0.00 3.60
1433 1944 2.351244 CGTCTAGCCTGCCACCTCA 61.351 63.158 0.00 0.00 0.00 3.86
1436 1947 1.078848 CTAGCCTGCCACCTCACAC 60.079 63.158 0.00 0.00 0.00 3.82
1466 1977 6.376864 TGGCATGTAGTTTATGTGCAACTTAT 59.623 34.615 0.00 0.00 38.04 1.73
1469 1980 9.221775 GCATGTAGTTTATGTGCAACTTATAAC 57.778 33.333 0.00 0.00 38.04 1.89
1507 2018 9.952030 TCATAACTTTGTGTGGAATAATAGACA 57.048 29.630 0.00 0.00 0.00 3.41
1508 2019 9.988350 CATAACTTTGTGTGGAATAATAGACAC 57.012 33.333 0.00 0.00 39.35 3.67
1509 2020 9.733556 ATAACTTTGTGTGGAATAATAGACACA 57.266 29.630 0.00 0.00 45.26 3.72
1510 2021 8.635765 AACTTTGTGTGGAATAATAGACACAT 57.364 30.769 0.00 0.00 45.96 3.21
1511 2022 9.733556 AACTTTGTGTGGAATAATAGACACATA 57.266 29.630 0.00 0.00 45.96 2.29
1512 2023 9.162764 ACTTTGTGTGGAATAATAGACACATAC 57.837 33.333 0.00 0.00 45.96 2.39
1514 2025 8.942338 TTGTGTGGAATAATAGACACATACTC 57.058 34.615 0.00 0.00 45.96 2.59
1515 2026 7.497595 TGTGTGGAATAATAGACACATACTCC 58.502 38.462 0.00 0.00 42.81 3.85
1517 2028 6.157211 GTGGAATAATAGACACATACTCCCG 58.843 44.000 0.00 0.00 34.16 5.14
1518 2029 5.245301 TGGAATAATAGACACATACTCCCGG 59.755 44.000 0.00 0.00 0.00 5.73
1520 2031 1.339097 ATAGACACATACTCCCGGCC 58.661 55.000 0.00 0.00 0.00 6.13
1521 2032 1.105167 TAGACACATACTCCCGGCCG 61.105 60.000 21.04 21.04 0.00 6.13
1554 2082 6.533723 GTGAAATCATGTTACTGTATCCGTGA 59.466 38.462 10.48 10.48 0.00 4.35
1572 2110 4.268884 CCGTGAATGCTAGCTTAAGTCTTC 59.731 45.833 17.23 3.68 0.00 2.87
1610 2148 5.294799 GGTGTTGTGACCGCATATTTGTATA 59.705 40.000 0.00 0.00 0.00 1.47
1631 2169 3.393800 AGACGACTTGACTTGGACATTG 58.606 45.455 0.00 0.00 0.00 2.82
1645 2183 3.245016 TGGACATTGACATGAAAGCCTCT 60.245 43.478 0.00 0.00 34.11 3.69
1662 2200 5.082425 AGCCTCTGAAGGATTGAAAATTGT 58.918 37.500 0.00 0.00 46.67 2.71
1673 2211 5.801947 GGATTGAAAATTGTGGATCTTGTCG 59.198 40.000 0.00 0.00 0.00 4.35
1723 2261 6.516739 AAGACCCATTCTAAGCTTAAAAGC 57.483 37.500 7.74 6.59 42.56 3.51
1785 2328 6.397272 CCATAGGTGCAAAAATGTATGTTGT 58.603 36.000 0.00 0.00 0.00 3.32
1827 2370 2.095919 GTGTGTTCACGGTAAATCTGCC 60.096 50.000 0.00 0.00 34.79 4.85
1848 2391 1.838077 AGCCAAGTATAGTGTGGACCC 59.162 52.381 11.00 0.00 34.05 4.46
1849 2392 1.557832 GCCAAGTATAGTGTGGACCCA 59.442 52.381 11.00 0.00 34.05 4.51
1850 2393 2.026636 GCCAAGTATAGTGTGGACCCAA 60.027 50.000 11.00 0.00 34.05 4.12
1851 2394 3.606687 CCAAGTATAGTGTGGACCCAAC 58.393 50.000 0.00 0.00 34.05 3.77
1852 2395 3.263425 CCAAGTATAGTGTGGACCCAACT 59.737 47.826 2.07 2.07 34.05 3.16
1853 2396 4.504858 CAAGTATAGTGTGGACCCAACTC 58.495 47.826 0.00 0.00 0.00 3.01
1854 2397 2.758979 AGTATAGTGTGGACCCAACTCG 59.241 50.000 0.00 0.00 0.00 4.18
1855 2398 1.933021 ATAGTGTGGACCCAACTCGA 58.067 50.000 0.00 0.00 0.00 4.04
1856 2399 1.707106 TAGTGTGGACCCAACTCGAA 58.293 50.000 0.00 0.00 0.00 3.71
1857 2400 0.393077 AGTGTGGACCCAACTCGAAG 59.607 55.000 0.00 0.00 0.00 3.79
1858 2401 0.391597 GTGTGGACCCAACTCGAAGA 59.608 55.000 0.00 0.00 0.00 2.87
1859 2402 0.391597 TGTGGACCCAACTCGAAGAC 59.608 55.000 0.00 0.00 0.00 3.01
1860 2403 0.391597 GTGGACCCAACTCGAAGACA 59.608 55.000 0.00 0.00 0.00 3.41
1861 2404 1.124780 TGGACCCAACTCGAAGACAA 58.875 50.000 0.00 0.00 0.00 3.18
1862 2405 1.202604 TGGACCCAACTCGAAGACAAC 60.203 52.381 0.00 0.00 0.00 3.32
1863 2406 1.070289 GGACCCAACTCGAAGACAACT 59.930 52.381 0.00 0.00 0.00 3.16
1864 2407 2.405172 GACCCAACTCGAAGACAACTC 58.595 52.381 0.00 0.00 0.00 3.01
1865 2408 1.269621 ACCCAACTCGAAGACAACTCG 60.270 52.381 0.00 0.00 0.00 4.18
1866 2409 1.269621 CCCAACTCGAAGACAACTCGT 60.270 52.381 0.00 0.00 0.00 4.18
1867 2410 1.787155 CCAACTCGAAGACAACTCGTG 59.213 52.381 0.00 0.00 0.00 4.35
1868 2411 1.190323 CAACTCGAAGACAACTCGTGC 59.810 52.381 0.00 0.00 0.00 5.34
1869 2412 0.660595 ACTCGAAGACAACTCGTGCG 60.661 55.000 0.00 0.00 0.00 5.34
1870 2413 0.385598 CTCGAAGACAACTCGTGCGA 60.386 55.000 0.00 0.00 0.00 5.10
1871 2414 0.659417 TCGAAGACAACTCGTGCGAC 60.659 55.000 0.00 0.00 0.00 5.19
1872 2415 1.606350 CGAAGACAACTCGTGCGACC 61.606 60.000 0.00 0.00 0.00 4.79
1873 2416 0.318784 GAAGACAACTCGTGCGACCT 60.319 55.000 0.00 0.00 0.00 3.85
1874 2417 0.597637 AAGACAACTCGTGCGACCTG 60.598 55.000 0.00 0.00 0.00 4.00
1875 2418 1.007734 GACAACTCGTGCGACCTGA 60.008 57.895 0.00 0.00 0.00 3.86
1876 2419 1.276145 GACAACTCGTGCGACCTGAC 61.276 60.000 0.00 0.00 0.00 3.51
1877 2420 1.299850 CAACTCGTGCGACCTGACA 60.300 57.895 0.00 0.00 0.00 3.58
1878 2421 0.874175 CAACTCGTGCGACCTGACAA 60.874 55.000 0.00 0.00 0.00 3.18
1879 2422 0.597637 AACTCGTGCGACCTGACAAG 60.598 55.000 0.00 0.00 0.00 3.16
1890 2433 2.656947 CCTGACAAGGGGTTTTCTCA 57.343 50.000 0.00 0.00 40.27 3.27
1891 2434 2.944129 CCTGACAAGGGGTTTTCTCAA 58.056 47.619 0.00 0.00 40.27 3.02
1892 2435 2.887152 CCTGACAAGGGGTTTTCTCAAG 59.113 50.000 0.00 0.00 40.27 3.02
1893 2436 3.555966 CTGACAAGGGGTTTTCTCAAGT 58.444 45.455 0.00 0.00 0.00 3.16
1894 2437 3.287222 TGACAAGGGGTTTTCTCAAGTG 58.713 45.455 0.00 0.00 0.00 3.16
1895 2438 2.623416 GACAAGGGGTTTTCTCAAGTGG 59.377 50.000 0.00 0.00 0.00 4.00
1896 2439 2.024369 ACAAGGGGTTTTCTCAAGTGGT 60.024 45.455 0.00 0.00 0.00 4.16
1897 2440 2.362077 CAAGGGGTTTTCTCAAGTGGTG 59.638 50.000 0.00 0.00 0.00 4.17
1898 2441 1.569072 AGGGGTTTTCTCAAGTGGTGT 59.431 47.619 0.00 0.00 0.00 4.16
1899 2442 2.024369 AGGGGTTTTCTCAAGTGGTGTT 60.024 45.455 0.00 0.00 0.00 3.32
1900 2443 2.764010 GGGGTTTTCTCAAGTGGTGTTT 59.236 45.455 0.00 0.00 0.00 2.83
1901 2444 3.196901 GGGGTTTTCTCAAGTGGTGTTTT 59.803 43.478 0.00 0.00 0.00 2.43
1902 2445 4.180817 GGGTTTTCTCAAGTGGTGTTTTG 58.819 43.478 0.00 0.00 0.00 2.44
1903 2446 4.081917 GGGTTTTCTCAAGTGGTGTTTTGA 60.082 41.667 0.00 0.00 32.75 2.69
1904 2447 4.862574 GGTTTTCTCAAGTGGTGTTTTGAC 59.137 41.667 0.00 0.00 30.66 3.18
1905 2448 4.349663 TTTCTCAAGTGGTGTTTTGACG 57.650 40.909 0.00 0.00 30.66 4.35
1906 2449 3.254470 TCTCAAGTGGTGTTTTGACGA 57.746 42.857 0.00 0.00 30.66 4.20
1907 2450 3.194861 TCTCAAGTGGTGTTTTGACGAG 58.805 45.455 0.00 0.00 30.66 4.18
1908 2451 2.285083 TCAAGTGGTGTTTTGACGAGG 58.715 47.619 0.00 0.00 0.00 4.63
1909 2452 1.021968 AAGTGGTGTTTTGACGAGGC 58.978 50.000 0.00 0.00 0.00 4.70
1910 2453 0.107410 AGTGGTGTTTTGACGAGGCA 60.107 50.000 0.00 0.00 0.00 4.75
1911 2454 0.736053 GTGGTGTTTTGACGAGGCAA 59.264 50.000 0.00 0.00 0.00 4.52
1912 2455 0.736053 TGGTGTTTTGACGAGGCAAC 59.264 50.000 0.00 0.00 0.00 4.17
1913 2456 0.736053 GGTGTTTTGACGAGGCAACA 59.264 50.000 0.00 0.00 41.41 3.33
1914 2457 1.133407 GGTGTTTTGACGAGGCAACAA 59.867 47.619 0.00 0.00 41.41 2.83
1915 2458 2.450160 GTGTTTTGACGAGGCAACAAG 58.550 47.619 0.00 0.00 41.41 3.16
1916 2459 2.088423 TGTTTTGACGAGGCAACAAGT 58.912 42.857 0.00 0.00 41.41 3.16
1917 2460 2.159448 TGTTTTGACGAGGCAACAAGTG 60.159 45.455 0.00 0.00 41.41 3.16
1937 2480 3.543665 TGCAACTAGATGTATGCATGCA 58.456 40.909 25.04 25.04 43.32 3.96
1938 2481 3.946558 TGCAACTAGATGTATGCATGCAA 59.053 39.130 26.68 9.06 43.32 4.08
1939 2482 4.581409 TGCAACTAGATGTATGCATGCAAT 59.419 37.500 26.68 14.25 43.32 3.56
1952 2495 2.070783 CATGCAATGCACTGTTTTCCC 58.929 47.619 11.23 0.00 43.04 3.97
1953 2496 0.392336 TGCAATGCACTGTTTTCCCC 59.608 50.000 2.72 0.00 31.71 4.81
1954 2497 0.392336 GCAATGCACTGTTTTCCCCA 59.608 50.000 0.00 0.00 0.00 4.96
1955 2498 1.002315 GCAATGCACTGTTTTCCCCAT 59.998 47.619 0.00 0.00 0.00 4.00
1956 2499 2.932187 GCAATGCACTGTTTTCCCCATC 60.932 50.000 0.00 0.00 0.00 3.51
1957 2500 1.560505 ATGCACTGTTTTCCCCATCC 58.439 50.000 0.00 0.00 0.00 3.51
1958 2501 0.541764 TGCACTGTTTTCCCCATCCC 60.542 55.000 0.00 0.00 0.00 3.85
1959 2502 0.251787 GCACTGTTTTCCCCATCCCT 60.252 55.000 0.00 0.00 0.00 4.20
1960 2503 1.827245 GCACTGTTTTCCCCATCCCTT 60.827 52.381 0.00 0.00 0.00 3.95
1961 2504 2.608623 CACTGTTTTCCCCATCCCTTT 58.391 47.619 0.00 0.00 0.00 3.11
1962 2505 2.972021 CACTGTTTTCCCCATCCCTTTT 59.028 45.455 0.00 0.00 0.00 2.27
1963 2506 3.006859 CACTGTTTTCCCCATCCCTTTTC 59.993 47.826 0.00 0.00 0.00 2.29
1964 2507 3.116746 ACTGTTTTCCCCATCCCTTTTCT 60.117 43.478 0.00 0.00 0.00 2.52
1965 2508 3.903714 CTGTTTTCCCCATCCCTTTTCTT 59.096 43.478 0.00 0.00 0.00 2.52
1966 2509 5.081315 TGTTTTCCCCATCCCTTTTCTTA 57.919 39.130 0.00 0.00 0.00 2.10
1967 2510 5.660533 TGTTTTCCCCATCCCTTTTCTTAT 58.339 37.500 0.00 0.00 0.00 1.73
1968 2511 6.806217 TGTTTTCCCCATCCCTTTTCTTATA 58.194 36.000 0.00 0.00 0.00 0.98
1969 2512 7.426667 TGTTTTCCCCATCCCTTTTCTTATAT 58.573 34.615 0.00 0.00 0.00 0.86
1970 2513 7.904022 TGTTTTCCCCATCCCTTTTCTTATATT 59.096 33.333 0.00 0.00 0.00 1.28
1971 2514 7.912778 TTTCCCCATCCCTTTTCTTATATTG 57.087 36.000 0.00 0.00 0.00 1.90
1972 2515 5.964288 TCCCCATCCCTTTTCTTATATTGG 58.036 41.667 0.00 0.00 0.00 3.16
1973 2516 5.086621 CCCCATCCCTTTTCTTATATTGGG 58.913 45.833 0.00 0.00 40.79 4.12
1974 2517 5.401353 CCCCATCCCTTTTCTTATATTGGGT 60.401 44.000 0.00 0.00 39.72 4.51
1975 2518 6.143206 CCCATCCCTTTTCTTATATTGGGTT 58.857 40.000 0.00 0.00 37.16 4.11
1976 2519 6.615316 CCCATCCCTTTTCTTATATTGGGTTT 59.385 38.462 0.00 0.00 37.16 3.27
1977 2520 7.127186 CCCATCCCTTTTCTTATATTGGGTTTT 59.873 37.037 0.00 0.00 37.16 2.43
1978 2521 8.204160 CCATCCCTTTTCTTATATTGGGTTTTC 58.796 37.037 0.00 0.00 36.23 2.29
1979 2522 7.399245 TCCCTTTTCTTATATTGGGTTTTCG 57.601 36.000 0.00 0.00 36.23 3.46
1980 2523 6.949463 TCCCTTTTCTTATATTGGGTTTTCGT 59.051 34.615 0.00 0.00 36.23 3.85
1981 2524 8.108364 TCCCTTTTCTTATATTGGGTTTTCGTA 58.892 33.333 0.00 0.00 36.23 3.43
1982 2525 8.909923 CCCTTTTCTTATATTGGGTTTTCGTAT 58.090 33.333 0.00 0.00 0.00 3.06
1983 2526 9.730420 CCTTTTCTTATATTGGGTTTTCGTATG 57.270 33.333 0.00 0.00 0.00 2.39
1984 2527 9.730420 CTTTTCTTATATTGGGTTTTCGTATGG 57.270 33.333 0.00 0.00 0.00 2.74
1985 2528 6.870971 TCTTATATTGGGTTTTCGTATGGC 57.129 37.500 0.00 0.00 0.00 4.40
1986 2529 5.467399 TCTTATATTGGGTTTTCGTATGGCG 59.533 40.000 0.00 0.00 43.01 5.69
1987 2530 1.828979 ATTGGGTTTTCGTATGGCGT 58.171 45.000 0.00 0.00 42.13 5.68
1988 2531 1.606903 TTGGGTTTTCGTATGGCGTT 58.393 45.000 0.00 0.00 42.13 4.84
1989 2532 1.606903 TGGGTTTTCGTATGGCGTTT 58.393 45.000 0.00 0.00 42.13 3.60
1990 2533 1.955080 TGGGTTTTCGTATGGCGTTTT 59.045 42.857 0.00 0.00 42.13 2.43
1991 2534 2.030981 TGGGTTTTCGTATGGCGTTTTC 60.031 45.455 0.00 0.00 42.13 2.29
1992 2535 2.030981 GGGTTTTCGTATGGCGTTTTCA 60.031 45.455 0.00 0.00 42.13 2.69
1993 2536 3.550436 GGGTTTTCGTATGGCGTTTTCAA 60.550 43.478 0.00 0.00 42.13 2.69
1994 2537 3.422876 GGTTTTCGTATGGCGTTTTCAAC 59.577 43.478 0.00 0.00 42.13 3.18
1995 2538 3.965292 TTTCGTATGGCGTTTTCAACA 57.035 38.095 0.00 0.00 42.13 3.33
1996 2539 3.965292 TTCGTATGGCGTTTTCAACAA 57.035 38.095 0.00 0.00 42.13 2.83
1997 2540 3.529634 TCGTATGGCGTTTTCAACAAG 57.470 42.857 0.00 0.00 42.13 3.16
1998 2541 2.224549 TCGTATGGCGTTTTCAACAAGG 59.775 45.455 0.00 0.00 42.13 3.61
1999 2542 2.324860 GTATGGCGTTTTCAACAAGGC 58.675 47.619 0.00 0.00 36.92 4.35
2000 2543 0.749649 ATGGCGTTTTCAACAAGGCA 59.250 45.000 1.08 0.00 38.94 4.75
2001 2544 0.749649 TGGCGTTTTCAACAAGGCAT 59.250 45.000 1.08 0.00 38.94 4.40
2002 2545 1.139163 GGCGTTTTCAACAAGGCATG 58.861 50.000 0.00 0.00 38.94 4.06
2003 2546 1.537990 GGCGTTTTCAACAAGGCATGT 60.538 47.619 0.00 0.00 46.82 3.21
2004 2547 1.522258 GCGTTTTCAACAAGGCATGTG 59.478 47.619 0.00 0.00 42.99 3.21
2005 2548 2.126467 CGTTTTCAACAAGGCATGTGG 58.874 47.619 0.00 0.00 42.99 4.17
2006 2549 2.482864 GTTTTCAACAAGGCATGTGGG 58.517 47.619 0.00 0.00 42.99 4.61
2007 2550 1.786937 TTTCAACAAGGCATGTGGGT 58.213 45.000 0.00 0.00 42.99 4.51
2008 2551 1.786937 TTCAACAAGGCATGTGGGTT 58.213 45.000 0.00 0.00 42.99 4.11
2009 2552 1.786937 TCAACAAGGCATGTGGGTTT 58.213 45.000 0.00 0.00 42.99 3.27
2010 2553 1.411977 TCAACAAGGCATGTGGGTTTG 59.588 47.619 0.00 0.00 42.99 2.93
2011 2554 1.411977 CAACAAGGCATGTGGGTTTGA 59.588 47.619 0.00 0.00 42.99 2.69
2012 2555 1.786937 ACAAGGCATGTGGGTTTGAA 58.213 45.000 0.00 0.00 41.93 2.69
2013 2556 2.114616 ACAAGGCATGTGGGTTTGAAA 58.885 42.857 0.00 0.00 41.93 2.69
2014 2557 2.102925 ACAAGGCATGTGGGTTTGAAAG 59.897 45.455 0.00 0.00 41.93 2.62
2015 2558 2.086610 AGGCATGTGGGTTTGAAAGT 57.913 45.000 0.00 0.00 0.00 2.66
2016 2559 3.237268 AGGCATGTGGGTTTGAAAGTA 57.763 42.857 0.00 0.00 0.00 2.24
2017 2560 3.571590 AGGCATGTGGGTTTGAAAGTAA 58.428 40.909 0.00 0.00 0.00 2.24
2018 2561 3.964031 AGGCATGTGGGTTTGAAAGTAAA 59.036 39.130 0.00 0.00 0.00 2.01
2019 2562 4.055360 GGCATGTGGGTTTGAAAGTAAAC 58.945 43.478 0.00 0.00 39.28 2.01
2020 2563 3.733727 GCATGTGGGTTTGAAAGTAAACG 59.266 43.478 0.00 0.00 40.56 3.60
2022 2565 2.099427 TGTGGGTTTGAAAGTAAACGCC 59.901 45.455 13.44 8.25 46.66 5.68
2023 2566 1.334243 TGGGTTTGAAAGTAAACGCCG 59.666 47.619 13.44 0.00 46.66 6.46
2024 2567 1.335233 GGGTTTGAAAGTAAACGCCGG 60.335 52.381 0.00 0.00 43.55 6.13
2025 2568 1.335233 GGTTTGAAAGTAAACGCCGGG 60.335 52.381 2.18 0.00 40.56 5.73
2026 2569 0.953003 TTTGAAAGTAAACGCCGGGG 59.047 50.000 18.33 18.33 0.00 5.73
2027 2570 0.890090 TTGAAAGTAAACGCCGGGGG 60.890 55.000 23.83 9.88 0.00 5.40
2028 2571 1.003476 GAAAGTAAACGCCGGGGGA 60.003 57.895 23.83 4.61 0.00 4.81
2087 2630 7.679783 TCAACCAATTTCTATGAGTGAGAGAA 58.320 34.615 0.00 0.00 29.73 2.87
2090 2633 7.453393 ACCAATTTCTATGAGTGAGAGAAACA 58.547 34.615 1.36 0.00 43.10 2.83
2138 2681 5.512788 GTCATGAAACCTTTGCAACATATCG 59.487 40.000 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.669077 CTGGTACGCTGGCTACCTAG 59.331 60.000 16.17 10.97 35.54 3.02
6 7 1.389609 GCTGGTACGCTGGCTACCTA 61.390 60.000 16.17 7.40 35.54 3.08
7 8 2.722201 GCTGGTACGCTGGCTACCT 61.722 63.158 16.17 0.00 35.54 3.08
8 9 2.202892 GCTGGTACGCTGGCTACC 60.203 66.667 11.51 11.51 35.13 3.18
9 10 1.519455 CTGCTGGTACGCTGGCTAC 60.519 63.158 0.00 0.00 0.00 3.58
11 12 2.111999 TTTCTGCTGGTACGCTGGCT 62.112 55.000 0.00 0.00 0.00 4.75
12 13 1.639298 CTTTCTGCTGGTACGCTGGC 61.639 60.000 0.00 0.00 0.00 4.85
13 14 0.037326 TCTTTCTGCTGGTACGCTGG 60.037 55.000 0.00 0.00 0.00 4.85
14 15 1.067565 TCTCTTTCTGCTGGTACGCTG 60.068 52.381 0.00 0.00 0.00 5.18
15 16 1.067495 GTCTCTTTCTGCTGGTACGCT 60.067 52.381 0.00 0.00 0.00 5.07
16 17 1.351153 GTCTCTTTCTGCTGGTACGC 58.649 55.000 0.00 0.00 0.00 4.42
17 18 1.068472 ACGTCTCTTTCTGCTGGTACG 60.068 52.381 0.00 0.00 35.38 3.67
18 19 2.597520 GACGTCTCTTTCTGCTGGTAC 58.402 52.381 8.70 0.00 0.00 3.34
19 20 1.199327 CGACGTCTCTTTCTGCTGGTA 59.801 52.381 14.70 0.00 0.00 3.25
20 21 0.039074 CGACGTCTCTTTCTGCTGGT 60.039 55.000 14.70 0.00 0.00 4.00
21 22 0.241213 TCGACGTCTCTTTCTGCTGG 59.759 55.000 14.70 0.00 0.00 4.85
22 23 1.332178 GTCGACGTCTCTTTCTGCTG 58.668 55.000 14.70 0.00 0.00 4.41
23 24 0.110147 CGTCGACGTCTCTTTCTGCT 60.110 55.000 29.08 0.00 34.11 4.24
24 25 1.066114 CCGTCGACGTCTCTTTCTGC 61.066 60.000 33.49 0.00 37.74 4.26
25 26 0.237761 ACCGTCGACGTCTCTTTCTG 59.762 55.000 33.49 18.46 37.74 3.02
26 27 0.237761 CACCGTCGACGTCTCTTTCT 59.762 55.000 33.49 5.20 37.74 2.52
27 28 0.236711 TCACCGTCGACGTCTCTTTC 59.763 55.000 33.49 0.00 37.74 2.62
28 29 0.040603 GTCACCGTCGACGTCTCTTT 60.041 55.000 33.49 9.98 37.74 2.52
29 30 0.883814 AGTCACCGTCGACGTCTCTT 60.884 55.000 33.49 15.24 40.98 2.85
30 31 1.290491 GAGTCACCGTCGACGTCTCT 61.290 60.000 33.49 24.37 40.98 3.10
31 32 1.132232 GAGTCACCGTCGACGTCTC 59.868 63.158 33.49 27.14 40.98 3.36
32 33 2.323580 GGAGTCACCGTCGACGTCT 61.324 63.158 33.49 24.38 40.98 4.18
33 34 1.849976 AAGGAGTCACCGTCGACGTC 61.850 60.000 33.49 23.80 44.74 4.34
34 35 1.849976 GAAGGAGTCACCGTCGACGT 61.850 60.000 33.49 20.15 44.74 4.34
35 36 1.154263 GAAGGAGTCACCGTCGACG 60.154 63.158 30.33 30.33 44.74 5.12
36 37 1.212229 GGAAGGAGTCACCGTCGAC 59.788 63.158 5.18 5.18 45.72 4.20
37 38 0.538977 AAGGAAGGAGTCACCGTCGA 60.539 55.000 0.00 0.00 45.72 4.20
38 39 1.135460 GTAAGGAAGGAGTCACCGTCG 60.135 57.143 0.00 0.00 45.72 5.12
39 40 2.169330 AGTAAGGAAGGAGTCACCGTC 58.831 52.381 0.00 0.00 44.41 4.79
40 41 2.305858 AGTAAGGAAGGAGTCACCGT 57.694 50.000 0.00 0.00 44.74 4.83
41 42 3.128938 CACTAGTAAGGAAGGAGTCACCG 59.871 52.174 0.00 0.00 44.74 4.94
42 43 3.119065 GCACTAGTAAGGAAGGAGTCACC 60.119 52.174 0.00 0.00 39.35 4.02
43 44 3.427773 CGCACTAGTAAGGAAGGAGTCAC 60.428 52.174 0.00 0.00 0.00 3.67
44 45 2.753452 CGCACTAGTAAGGAAGGAGTCA 59.247 50.000 0.00 0.00 0.00 3.41
45 46 2.754002 ACGCACTAGTAAGGAAGGAGTC 59.246 50.000 0.00 0.00 0.00 3.36
46 47 2.492484 CACGCACTAGTAAGGAAGGAGT 59.508 50.000 0.00 0.00 0.00 3.85
47 48 2.159226 CCACGCACTAGTAAGGAAGGAG 60.159 54.545 0.00 0.00 0.00 3.69
48 49 1.822990 CCACGCACTAGTAAGGAAGGA 59.177 52.381 0.00 0.00 0.00 3.36
49 50 1.549170 ACCACGCACTAGTAAGGAAGG 59.451 52.381 0.00 0.00 0.00 3.46
50 51 2.230508 TCACCACGCACTAGTAAGGAAG 59.769 50.000 0.00 0.00 0.00 3.46
51 52 2.241160 TCACCACGCACTAGTAAGGAA 58.759 47.619 0.00 0.00 0.00 3.36
52 53 1.913778 TCACCACGCACTAGTAAGGA 58.086 50.000 0.00 0.00 0.00 3.36
53 54 2.607187 CTTCACCACGCACTAGTAAGG 58.393 52.381 0.00 0.00 0.00 2.69
54 55 1.993370 GCTTCACCACGCACTAGTAAG 59.007 52.381 0.00 0.00 0.00 2.34
55 56 1.337447 GGCTTCACCACGCACTAGTAA 60.337 52.381 0.00 0.00 38.86 2.24
56 57 0.245539 GGCTTCACCACGCACTAGTA 59.754 55.000 0.00 0.00 38.86 1.82
57 58 1.004918 GGCTTCACCACGCACTAGT 60.005 57.895 0.00 0.00 38.86 2.57
58 59 1.005037 TGGCTTCACCACGCACTAG 60.005 57.895 0.00 0.00 46.36 2.57
59 60 3.143338 TGGCTTCACCACGCACTA 58.857 55.556 0.00 0.00 46.36 2.74
67 68 3.134127 GATGGCCGTGGCTTCACC 61.134 66.667 0.00 0.00 41.60 4.02
68 69 3.499737 CGATGGCCGTGGCTTCAC 61.500 66.667 0.00 0.00 41.60 3.18
74 75 4.758251 TGAGTGCGATGGCCGTGG 62.758 66.667 0.00 0.90 41.15 4.94
75 76 2.741985 TTGAGTGCGATGGCCGTG 60.742 61.111 0.00 0.00 41.15 4.94
76 77 2.434884 CTTGAGTGCGATGGCCGT 60.435 61.111 0.00 0.00 41.15 5.68
77 78 2.125552 TCTTGAGTGCGATGGCCG 60.126 61.111 0.00 0.00 38.85 6.13
92 93 2.435586 GTGCATGCTGTCGCCTCT 60.436 61.111 20.33 0.00 34.43 3.69
95 96 2.126734 GTTGTGCATGCTGTCGCC 60.127 61.111 20.33 0.47 34.43 5.54
96 97 2.126734 GGTTGTGCATGCTGTCGC 60.127 61.111 20.33 5.35 0.00 5.19
117 118 0.240411 AGGTGTCACGAGCTAACGTC 59.760 55.000 0.00 0.00 44.76 4.34
134 141 1.748122 GCCAGCCACAGATGTCAGG 60.748 63.158 0.00 0.00 0.00 3.86
181 188 1.906105 ATTTAAGGACGGCCGGAGCA 61.906 55.000 31.76 7.42 42.56 4.26
225 232 1.362717 CGACCGGACTTGTGTGAGT 59.637 57.895 9.46 0.00 0.00 3.41
242 257 1.004560 TGCAGAAAGGAGCTCACCG 60.005 57.895 17.19 0.00 34.73 4.94
243 258 0.676151 CCTGCAGAAAGGAGCTCACC 60.676 60.000 17.39 0.00 40.02 4.02
245 260 1.552337 CTACCTGCAGAAAGGAGCTCA 59.448 52.381 17.39 0.00 40.02 4.26
246 261 1.552792 ACTACCTGCAGAAAGGAGCTC 59.447 52.381 17.39 4.71 40.02 4.09
247 262 1.552792 GACTACCTGCAGAAAGGAGCT 59.447 52.381 17.39 0.00 40.02 4.09
248 263 1.406205 GGACTACCTGCAGAAAGGAGC 60.406 57.143 17.39 6.00 40.02 4.70
249 264 1.134965 CGGACTACCTGCAGAAAGGAG 60.135 57.143 17.39 7.26 40.02 3.69
323 338 4.386951 TGGACCACGACGCCATGG 62.387 66.667 7.63 7.63 42.13 3.66
368 391 0.249489 ATAAGCTTACAGCCGCCGAG 60.249 55.000 8.70 0.00 43.77 4.63
389 412 0.621862 GTGGGAGGGAGGGATGAAGT 60.622 60.000 0.00 0.00 0.00 3.01
412 435 5.540337 TGTCCTGTTTCTCTACTTGATCAGT 59.460 40.000 0.00 0.00 39.87 3.41
416 439 5.788450 CAGTGTCCTGTTTCTCTACTTGAT 58.212 41.667 0.00 0.00 33.80 2.57
427 450 6.291377 CACCATATATAGCAGTGTCCTGTTT 58.709 40.000 0.00 0.00 41.02 2.83
430 453 4.020751 AGCACCATATATAGCAGTGTCCTG 60.021 45.833 9.87 0.00 41.91 3.86
431 454 4.163427 AGCACCATATATAGCAGTGTCCT 58.837 43.478 9.87 0.00 0.00 3.85
432 455 4.543590 AGCACCATATATAGCAGTGTCC 57.456 45.455 9.87 0.00 0.00 4.02
433 456 5.178252 CACAAGCACCATATATAGCAGTGTC 59.822 44.000 14.44 4.74 33.53 3.67
434 457 5.059161 CACAAGCACCATATATAGCAGTGT 58.941 41.667 14.44 11.02 33.53 3.55
443 466 4.383173 CTGCTCATCACAAGCACCATATA 58.617 43.478 0.00 0.00 44.51 0.86
475 912 3.736759 ACCAACGTGTGTGTTTGAAAAAC 59.263 39.130 0.00 0.00 0.00 2.43
482 919 3.859411 AATGAACCAACGTGTGTGTTT 57.141 38.095 0.00 0.00 0.00 2.83
499 938 1.070843 CAGATTTACCGCCGCGTAATG 60.071 52.381 12.58 0.00 0.00 1.90
505 944 1.529865 GATAACCAGATTTACCGCCGC 59.470 52.381 0.00 0.00 0.00 6.53
540 983 1.994507 CTAGCAGTGAGGTCCGGACG 61.995 65.000 27.68 14.09 0.00 4.79
541 984 0.966370 ACTAGCAGTGAGGTCCGGAC 60.966 60.000 27.04 27.04 0.00 4.79
552 995 1.605058 CGTGGGGTAGCACTAGCAGT 61.605 60.000 8.95 0.00 45.49 4.40
553 996 1.141881 CGTGGGGTAGCACTAGCAG 59.858 63.158 8.95 0.00 45.49 4.24
554 997 2.355986 CCGTGGGGTAGCACTAGCA 61.356 63.158 8.95 0.00 45.49 3.49
555 998 2.499685 CCGTGGGGTAGCACTAGC 59.500 66.667 0.00 0.00 42.56 3.42
629 1073 1.073284 GGAGGGAGTACAAGTTTGGCA 59.927 52.381 0.00 0.00 0.00 4.92
643 1087 0.692756 TGCATTATGGGACGGAGGGA 60.693 55.000 0.00 0.00 0.00 4.20
648 1092 2.575532 ACATCTTGCATTATGGGACGG 58.424 47.619 12.05 0.00 0.00 4.79
651 1095 5.483231 TGGAAAAACATCTTGCATTATGGGA 59.517 36.000 12.05 0.00 0.00 4.37
652 1096 5.732633 TGGAAAAACATCTTGCATTATGGG 58.267 37.500 12.05 0.00 0.00 4.00
658 1102 4.612264 AGCTTGGAAAAACATCTTGCAT 57.388 36.364 0.00 0.00 0.00 3.96
660 1104 6.856895 ACTATAGCTTGGAAAAACATCTTGC 58.143 36.000 0.00 0.00 0.00 4.01
661 1105 9.167311 ACTACTATAGCTTGGAAAAACATCTTG 57.833 33.333 0.00 0.00 0.00 3.02
662 1106 9.740710 AACTACTATAGCTTGGAAAAACATCTT 57.259 29.630 0.00 0.00 0.00 2.40
663 1107 9.384764 GAACTACTATAGCTTGGAAAAACATCT 57.615 33.333 0.00 0.00 0.00 2.90
665 1109 9.515226 TTGAACTACTATAGCTTGGAAAAACAT 57.485 29.630 0.00 0.00 0.00 2.71
666 1110 8.911918 TTGAACTACTATAGCTTGGAAAAACA 57.088 30.769 0.00 0.00 0.00 2.83
672 1116 9.733556 TCAAATTTTGAACTACTATAGCTTGGA 57.266 29.630 9.36 0.00 36.59 3.53
701 1145 9.799106 ACTTACTACTACAGGTCTAGTGTTTAA 57.201 33.333 0.00 0.00 0.00 1.52
705 1149 8.144862 ACTACTTACTACTACAGGTCTAGTGT 57.855 38.462 0.00 0.00 0.00 3.55
706 1150 9.097257 GAACTACTTACTACTACAGGTCTAGTG 57.903 40.741 0.00 0.00 0.00 2.74
708 1152 9.664332 TTGAACTACTTACTACTACAGGTCTAG 57.336 37.037 0.00 0.00 0.00 2.43
710 1154 8.930846 TTTGAACTACTTACTACTACAGGTCT 57.069 34.615 0.00 0.00 0.00 3.85
719 1163 9.941664 TGCTACGATATTTGAACTACTTACTAC 57.058 33.333 0.00 0.00 0.00 2.73
721 1165 9.680315 GATGCTACGATATTTGAACTACTTACT 57.320 33.333 0.00 0.00 0.00 2.24
722 1166 8.628279 CGATGCTACGATATTTGAACTACTTAC 58.372 37.037 0.00 0.00 35.09 2.34
723 1167 8.562052 TCGATGCTACGATATTTGAACTACTTA 58.438 33.333 0.00 0.00 37.37 2.24
724 1168 7.423199 TCGATGCTACGATATTTGAACTACTT 58.577 34.615 0.00 0.00 37.37 2.24
770 1251 3.441572 TCTTACCACTACGCCAAGACTAC 59.558 47.826 0.00 0.00 0.00 2.73
793 1277 3.127533 GCCTGCAGCAAGGTACGG 61.128 66.667 8.66 2.79 42.97 4.02
867 1351 0.907704 ACTCACATGTCGCCCCCTTA 60.908 55.000 0.00 0.00 0.00 2.69
900 1384 8.854117 AGTGCAGAGACAGAAATTTAAAAAGAT 58.146 29.630 0.00 0.00 0.00 2.40
902 1386 8.749499 CAAGTGCAGAGACAGAAATTTAAAAAG 58.251 33.333 0.00 0.00 0.00 2.27
904 1388 7.995289 TCAAGTGCAGAGACAGAAATTTAAAA 58.005 30.769 0.00 0.00 0.00 1.52
905 1389 7.566760 TCAAGTGCAGAGACAGAAATTTAAA 57.433 32.000 0.00 0.00 0.00 1.52
906 1390 7.750229 ATCAAGTGCAGAGACAGAAATTTAA 57.250 32.000 0.00 0.00 0.00 1.52
907 1391 8.097038 ACTATCAAGTGCAGAGACAGAAATTTA 58.903 33.333 0.00 0.00 33.57 1.40
908 1392 6.939163 ACTATCAAGTGCAGAGACAGAAATTT 59.061 34.615 0.00 0.00 33.57 1.82
909 1393 6.471146 ACTATCAAGTGCAGAGACAGAAATT 58.529 36.000 0.00 0.00 33.57 1.82
1033 1517 1.754226 GTAGCAGCAGGAGTAGAAGCT 59.246 52.381 0.00 0.00 37.95 3.74
1136 1620 1.001760 TGGTACTCCTGGGAGAGGC 59.998 63.158 21.86 11.13 44.53 4.70
1154 1638 2.430921 CGCGGTTCTTGAGCTCGT 60.431 61.111 9.64 0.00 0.00 4.18
1203 1687 2.040442 TTCCCCATCCTCTCCGCA 59.960 61.111 0.00 0.00 0.00 5.69
1291 1776 4.013267 AGAAGCTGCATGTTGACTACTT 57.987 40.909 1.02 0.00 0.00 2.24
1368 1879 7.059448 ACACACTTGCACACTTTTTATTTTG 57.941 32.000 0.00 0.00 0.00 2.44
1369 1880 7.665561 AACACACTTGCACACTTTTTATTTT 57.334 28.000 0.00 0.00 0.00 1.82
1370 1881 7.665561 AAACACACTTGCACACTTTTTATTT 57.334 28.000 0.00 0.00 0.00 1.40
1371 1882 7.148490 GGAAAACACACTTGCACACTTTTTATT 60.148 33.333 0.00 0.00 0.00 1.40
1372 1883 6.312672 GGAAAACACACTTGCACACTTTTTAT 59.687 34.615 0.00 0.00 0.00 1.40
1373 1884 5.635700 GGAAAACACACTTGCACACTTTTTA 59.364 36.000 0.00 0.00 0.00 1.52
1412 1923 1.192146 AGGTGGCAGGCTAGACGAAA 61.192 55.000 0.00 0.00 0.00 3.46
1424 1935 3.249805 ACATGGTGTGAGGTGGCA 58.750 55.556 0.00 0.00 0.00 4.92
1433 1944 2.584835 AACTACATGCCACATGGTGT 57.415 45.000 11.91 7.09 37.57 4.16
1436 1947 4.734402 GCACATAAACTACATGCCACATGG 60.734 45.833 11.91 0.00 38.53 3.66
1443 1954 9.221775 GTTATAAGTTGCACATAAACTACATGC 57.778 33.333 0.00 0.00 36.87 4.06
1450 1961 9.840427 ACATCTTGTTATAAGTTGCACATAAAC 57.160 29.630 0.00 0.00 0.00 2.01
1481 1992 9.952030 TGTCTATTATTCCACACAAAGTTATGA 57.048 29.630 0.00 0.00 0.00 2.15
1483 1994 9.733556 TGTGTCTATTATTCCACACAAAGTTAT 57.266 29.630 1.33 0.00 44.70 1.89
1491 2002 6.929606 GGGAGTATGTGTCTATTATTCCACAC 59.070 42.308 0.00 0.00 40.31 3.82
1492 2003 6.239204 CGGGAGTATGTGTCTATTATTCCACA 60.239 42.308 0.00 0.00 41.58 4.17
1493 2004 6.157211 CGGGAGTATGTGTCTATTATTCCAC 58.843 44.000 0.00 0.00 0.00 4.02
1494 2005 5.245301 CCGGGAGTATGTGTCTATTATTCCA 59.755 44.000 0.00 0.00 0.00 3.53
1495 2006 5.721232 CCGGGAGTATGTGTCTATTATTCC 58.279 45.833 0.00 0.00 0.00 3.01
1496 2007 5.169295 GCCGGGAGTATGTGTCTATTATTC 58.831 45.833 2.18 0.00 0.00 1.75
1497 2008 4.020485 GGCCGGGAGTATGTGTCTATTATT 60.020 45.833 2.18 0.00 0.00 1.40
1498 2009 3.514309 GGCCGGGAGTATGTGTCTATTAT 59.486 47.826 2.18 0.00 0.00 1.28
1500 2011 1.692519 GGCCGGGAGTATGTGTCTATT 59.307 52.381 2.18 0.00 0.00 1.73
1501 2012 1.339097 GGCCGGGAGTATGTGTCTAT 58.661 55.000 2.18 0.00 0.00 1.98
1502 2013 1.105167 CGGCCGGGAGTATGTGTCTA 61.105 60.000 20.10 0.00 0.00 2.59
1503 2014 2.423898 CGGCCGGGAGTATGTGTCT 61.424 63.158 20.10 0.00 0.00 3.41
1504 2015 2.106332 CGGCCGGGAGTATGTGTC 59.894 66.667 20.10 0.00 0.00 3.67
1505 2016 2.859525 TACCGGCCGGGAGTATGTGT 62.860 60.000 44.99 24.92 39.97 3.72
1507 2018 0.761702 ATTACCGGCCGGGAGTATGT 60.762 55.000 44.99 26.44 39.97 2.29
1508 2019 0.320421 CATTACCGGCCGGGAGTATG 60.320 60.000 44.99 33.91 39.97 2.39
1509 2020 0.470456 TCATTACCGGCCGGGAGTAT 60.470 55.000 44.99 28.05 39.97 2.12
1510 2021 1.076118 TCATTACCGGCCGGGAGTA 60.076 57.895 44.99 26.98 39.97 2.59
1511 2022 2.364579 TCATTACCGGCCGGGAGT 60.365 61.111 44.99 34.44 39.97 3.85
1512 2023 2.421739 CTCATTACCGGCCGGGAG 59.578 66.667 44.99 35.10 39.97 4.30
1514 2025 2.203015 CACTCATTACCGGCCGGG 60.203 66.667 44.99 29.21 43.62 5.73
1515 2026 0.391927 TTTCACTCATTACCGGCCGG 60.392 55.000 42.17 42.17 42.03 6.13
1517 2028 2.639065 TGATTTCACTCATTACCGGCC 58.361 47.619 0.00 0.00 0.00 6.13
1518 2029 3.627577 ACATGATTTCACTCATTACCGGC 59.372 43.478 0.00 0.00 33.59 6.13
1520 2031 7.064609 ACAGTAACATGATTTCACTCATTACCG 59.935 37.037 0.00 0.00 33.59 4.02
1521 2032 8.268850 ACAGTAACATGATTTCACTCATTACC 57.731 34.615 0.00 0.00 33.59 2.85
1549 2077 3.786635 AGACTTAAGCTAGCATTCACGG 58.213 45.455 18.83 2.72 0.00 4.94
1554 2082 5.649395 TGCATTGAAGACTTAAGCTAGCATT 59.351 36.000 18.83 10.75 0.00 3.56
1572 2110 3.989167 CACAACACCCATTAACTGCATTG 59.011 43.478 0.00 0.00 0.00 2.82
1610 2148 3.069586 TCAATGTCCAAGTCAAGTCGTCT 59.930 43.478 0.00 0.00 0.00 4.18
1631 2169 3.340814 TCCTTCAGAGGCTTTCATGTC 57.659 47.619 0.00 0.00 43.21 3.06
1645 2183 7.015487 ACAAGATCCACAATTTTCAATCCTTCA 59.985 33.333 0.00 0.00 0.00 3.02
1662 2200 1.107945 TACGCATCCGACAAGATCCA 58.892 50.000 0.00 0.00 38.29 3.41
1673 2211 0.103572 TTAGCCGGTCTTACGCATCC 59.896 55.000 1.90 0.00 0.00 3.51
1723 2261 0.109723 TGGGTCCCAAAACTTCCTCG 59.890 55.000 8.65 0.00 0.00 4.63
1750 2293 2.154462 GCACCTATGGCGCTCAAATAT 58.846 47.619 7.64 0.00 0.00 1.28
1752 2295 0.394216 TGCACCTATGGCGCTCAAAT 60.394 50.000 7.64 0.00 0.00 2.32
1785 2328 1.152376 TTGGGCCTGGTGCAATTCA 60.152 52.632 4.53 0.00 43.89 2.57
1827 2370 2.420129 GGGTCCACACTATACTTGGCTG 60.420 54.545 0.00 0.00 0.00 4.85
1848 2391 1.190323 GCACGAGTTGTCTTCGAGTTG 59.810 52.381 1.31 0.00 0.00 3.16
1849 2392 1.488527 GCACGAGTTGTCTTCGAGTT 58.511 50.000 1.31 0.00 0.00 3.01
1850 2393 0.660595 CGCACGAGTTGTCTTCGAGT 60.661 55.000 1.31 0.00 0.00 4.18
1851 2394 0.385598 TCGCACGAGTTGTCTTCGAG 60.386 55.000 1.31 0.00 0.00 4.04
1852 2395 0.659417 GTCGCACGAGTTGTCTTCGA 60.659 55.000 1.31 0.00 0.00 3.71
1853 2396 1.606350 GGTCGCACGAGTTGTCTTCG 61.606 60.000 0.00 0.00 0.00 3.79
1854 2397 0.318784 AGGTCGCACGAGTTGTCTTC 60.319 55.000 0.00 0.00 0.00 2.87
1855 2398 0.597637 CAGGTCGCACGAGTTGTCTT 60.598 55.000 0.00 0.00 0.00 3.01
1856 2399 1.007271 CAGGTCGCACGAGTTGTCT 60.007 57.895 0.00 0.00 0.00 3.41
1857 2400 1.007734 TCAGGTCGCACGAGTTGTC 60.008 57.895 0.00 0.00 0.00 3.18
1858 2401 1.299926 GTCAGGTCGCACGAGTTGT 60.300 57.895 0.00 0.00 0.00 3.32
1859 2402 0.874175 TTGTCAGGTCGCACGAGTTG 60.874 55.000 0.00 0.00 0.00 3.16
1860 2403 0.597637 CTTGTCAGGTCGCACGAGTT 60.598 55.000 0.00 0.00 0.00 3.01
1861 2404 1.007271 CTTGTCAGGTCGCACGAGT 60.007 57.895 0.00 0.00 0.00 4.18
1862 2405 1.734477 CCTTGTCAGGTCGCACGAG 60.734 63.158 0.00 0.00 35.06 4.18
1863 2406 2.338620 CCTTGTCAGGTCGCACGA 59.661 61.111 0.00 0.00 35.06 4.35
1864 2407 2.738521 CCCTTGTCAGGTCGCACG 60.739 66.667 0.00 0.00 38.79 5.34
1865 2408 2.358737 CCCCTTGTCAGGTCGCAC 60.359 66.667 0.00 0.00 38.79 5.34
1866 2409 1.990160 AAACCCCTTGTCAGGTCGCA 61.990 55.000 0.00 0.00 38.79 5.10
1867 2410 0.822121 AAAACCCCTTGTCAGGTCGC 60.822 55.000 0.00 0.00 38.79 5.19
1868 2411 1.202770 AGAAAACCCCTTGTCAGGTCG 60.203 52.381 0.00 0.00 38.79 4.79
1869 2412 2.158667 TGAGAAAACCCCTTGTCAGGTC 60.159 50.000 0.00 0.00 38.79 3.85
1870 2413 1.850345 TGAGAAAACCCCTTGTCAGGT 59.150 47.619 0.00 0.00 38.79 4.00
1871 2414 2.656947 TGAGAAAACCCCTTGTCAGG 57.343 50.000 0.00 0.00 40.45 3.86
1872 2415 3.316308 CACTTGAGAAAACCCCTTGTCAG 59.684 47.826 0.00 0.00 31.03 3.51
1873 2416 3.287222 CACTTGAGAAAACCCCTTGTCA 58.713 45.455 0.00 0.00 0.00 3.58
1874 2417 2.623416 CCACTTGAGAAAACCCCTTGTC 59.377 50.000 0.00 0.00 0.00 3.18
1875 2418 2.024369 ACCACTTGAGAAAACCCCTTGT 60.024 45.455 0.00 0.00 0.00 3.16
1876 2419 2.362077 CACCACTTGAGAAAACCCCTTG 59.638 50.000 0.00 0.00 0.00 3.61
1877 2420 2.024369 ACACCACTTGAGAAAACCCCTT 60.024 45.455 0.00 0.00 0.00 3.95
1878 2421 1.569072 ACACCACTTGAGAAAACCCCT 59.431 47.619 0.00 0.00 0.00 4.79
1879 2422 2.067365 ACACCACTTGAGAAAACCCC 57.933 50.000 0.00 0.00 0.00 4.95
1880 2423 4.081917 TCAAAACACCACTTGAGAAAACCC 60.082 41.667 0.00 0.00 0.00 4.11
1881 2424 4.862574 GTCAAAACACCACTTGAGAAAACC 59.137 41.667 0.00 0.00 32.36 3.27
1882 2425 4.557301 CGTCAAAACACCACTTGAGAAAAC 59.443 41.667 0.00 0.00 32.36 2.43
1883 2426 4.456222 TCGTCAAAACACCACTTGAGAAAA 59.544 37.500 0.00 0.00 32.36 2.29
1884 2427 4.004314 TCGTCAAAACACCACTTGAGAAA 58.996 39.130 0.00 0.00 32.36 2.52
1885 2428 3.601435 TCGTCAAAACACCACTTGAGAA 58.399 40.909 0.00 0.00 32.36 2.87
1886 2429 3.194861 CTCGTCAAAACACCACTTGAGA 58.805 45.455 0.00 0.00 32.36 3.27
1887 2430 2.287915 CCTCGTCAAAACACCACTTGAG 59.712 50.000 0.00 0.00 32.36 3.02
1888 2431 2.285083 CCTCGTCAAAACACCACTTGA 58.715 47.619 0.00 0.00 0.00 3.02
1889 2432 1.268539 GCCTCGTCAAAACACCACTTG 60.269 52.381 0.00 0.00 0.00 3.16
1890 2433 1.021968 GCCTCGTCAAAACACCACTT 58.978 50.000 0.00 0.00 0.00 3.16
1891 2434 0.107410 TGCCTCGTCAAAACACCACT 60.107 50.000 0.00 0.00 0.00 4.00
1892 2435 0.736053 TTGCCTCGTCAAAACACCAC 59.264 50.000 0.00 0.00 0.00 4.16
1893 2436 0.736053 GTTGCCTCGTCAAAACACCA 59.264 50.000 0.00 0.00 0.00 4.17
1894 2437 0.736053 TGTTGCCTCGTCAAAACACC 59.264 50.000 0.00 0.00 0.00 4.16
1895 2438 2.159435 ACTTGTTGCCTCGTCAAAACAC 60.159 45.455 0.00 0.00 32.54 3.32
1896 2439 2.088423 ACTTGTTGCCTCGTCAAAACA 58.912 42.857 0.00 0.00 0.00 2.83
1897 2440 2.450160 CACTTGTTGCCTCGTCAAAAC 58.550 47.619 0.00 0.00 0.00 2.43
1898 2441 1.202245 GCACTTGTTGCCTCGTCAAAA 60.202 47.619 0.00 0.00 46.63 2.44
1899 2442 0.380378 GCACTTGTTGCCTCGTCAAA 59.620 50.000 0.00 0.00 46.63 2.69
1900 2443 2.021722 GCACTTGTTGCCTCGTCAA 58.978 52.632 0.00 0.00 46.63 3.18
1901 2444 3.731136 GCACTTGTTGCCTCGTCA 58.269 55.556 0.00 0.00 46.63 4.35
1909 2452 5.106594 TGCATACATCTAGTTGCACTTGTTG 60.107 40.000 0.51 0.00 38.45 3.33
1910 2453 5.003160 TGCATACATCTAGTTGCACTTGTT 58.997 37.500 0.51 0.00 38.45 2.83
1911 2454 4.578871 TGCATACATCTAGTTGCACTTGT 58.421 39.130 0.51 0.00 38.45 3.16
1912 2455 5.507974 CATGCATACATCTAGTTGCACTTG 58.492 41.667 0.00 0.00 42.59 3.16
1913 2456 4.036027 GCATGCATACATCTAGTTGCACTT 59.964 41.667 14.21 0.00 42.59 3.16
1914 2457 3.562973 GCATGCATACATCTAGTTGCACT 59.437 43.478 14.21 0.00 42.59 4.40
1915 2458 3.313249 TGCATGCATACATCTAGTTGCAC 59.687 43.478 18.46 0.00 42.59 4.57
1916 2459 3.543665 TGCATGCATACATCTAGTTGCA 58.456 40.909 18.46 0.00 43.31 4.08
1917 2460 4.556942 TTGCATGCATACATCTAGTTGC 57.443 40.909 23.37 0.00 32.87 4.17
1932 2475 2.070783 GGGAAAACAGTGCATTGCATG 58.929 47.619 15.49 15.28 41.91 4.06
1933 2476 1.002315 GGGGAAAACAGTGCATTGCAT 59.998 47.619 15.49 0.00 41.91 3.96
1934 2477 0.392336 GGGGAAAACAGTGCATTGCA 59.608 50.000 7.38 7.38 35.60 4.08
1935 2478 0.392336 TGGGGAAAACAGTGCATTGC 59.608 50.000 9.42 0.46 0.00 3.56
1936 2479 2.354003 GGATGGGGAAAACAGTGCATTG 60.354 50.000 7.79 7.79 0.00 2.82
1937 2480 1.901833 GGATGGGGAAAACAGTGCATT 59.098 47.619 0.00 0.00 0.00 3.56
1938 2481 1.560505 GGATGGGGAAAACAGTGCAT 58.439 50.000 0.00 0.00 0.00 3.96
1939 2482 0.541764 GGGATGGGGAAAACAGTGCA 60.542 55.000 0.00 0.00 0.00 4.57
1940 2483 0.251787 AGGGATGGGGAAAACAGTGC 60.252 55.000 0.00 0.00 0.00 4.40
1941 2484 2.309136 AAGGGATGGGGAAAACAGTG 57.691 50.000 0.00 0.00 0.00 3.66
1942 2485 3.116746 AGAAAAGGGATGGGGAAAACAGT 60.117 43.478 0.00 0.00 0.00 3.55
1943 2486 3.510459 AGAAAAGGGATGGGGAAAACAG 58.490 45.455 0.00 0.00 0.00 3.16
1944 2487 3.628832 AGAAAAGGGATGGGGAAAACA 57.371 42.857 0.00 0.00 0.00 2.83
1945 2488 7.914427 ATATAAGAAAAGGGATGGGGAAAAC 57.086 36.000 0.00 0.00 0.00 2.43
1946 2489 7.346960 CCAATATAAGAAAAGGGATGGGGAAAA 59.653 37.037 0.00 0.00 0.00 2.29
1947 2490 6.843861 CCAATATAAGAAAAGGGATGGGGAAA 59.156 38.462 0.00 0.00 0.00 3.13
1948 2491 6.381250 CCAATATAAGAAAAGGGATGGGGAA 58.619 40.000 0.00 0.00 0.00 3.97
1949 2492 5.162881 CCCAATATAAGAAAAGGGATGGGGA 60.163 44.000 0.00 0.00 41.01 4.81
1950 2493 5.086621 CCCAATATAAGAAAAGGGATGGGG 58.913 45.833 0.00 0.00 41.01 4.96
1952 2495 7.675161 AAACCCAATATAAGAAAAGGGATGG 57.325 36.000 0.00 0.00 39.60 3.51
1953 2496 7.920682 CGAAAACCCAATATAAGAAAAGGGATG 59.079 37.037 0.00 0.00 39.60 3.51
1954 2497 7.618117 ACGAAAACCCAATATAAGAAAAGGGAT 59.382 33.333 0.00 0.00 39.60 3.85
1955 2498 6.949463 ACGAAAACCCAATATAAGAAAAGGGA 59.051 34.615 0.00 0.00 39.60 4.20
1956 2499 7.165460 ACGAAAACCCAATATAAGAAAAGGG 57.835 36.000 0.00 0.00 42.07 3.95
1957 2500 9.730420 CATACGAAAACCCAATATAAGAAAAGG 57.270 33.333 0.00 0.00 0.00 3.11
1958 2501 9.730420 CCATACGAAAACCCAATATAAGAAAAG 57.270 33.333 0.00 0.00 0.00 2.27
1959 2502 8.192110 GCCATACGAAAACCCAATATAAGAAAA 58.808 33.333 0.00 0.00 0.00 2.29
1960 2503 7.708998 GCCATACGAAAACCCAATATAAGAAA 58.291 34.615 0.00 0.00 0.00 2.52
1961 2504 7.266922 GCCATACGAAAACCCAATATAAGAA 57.733 36.000 0.00 0.00 0.00 2.52
1962 2505 6.870971 GCCATACGAAAACCCAATATAAGA 57.129 37.500 0.00 0.00 0.00 2.10
1987 2530 2.114616 ACCCACATGCCTTGTTGAAAA 58.885 42.857 0.00 0.00 36.00 2.29
1988 2531 1.786937 ACCCACATGCCTTGTTGAAA 58.213 45.000 0.00 0.00 36.00 2.69
1989 2532 1.786937 AACCCACATGCCTTGTTGAA 58.213 45.000 0.00 0.00 36.00 2.69
1990 2533 1.411977 CAAACCCACATGCCTTGTTGA 59.588 47.619 0.00 0.00 36.00 3.18
1991 2534 1.411977 TCAAACCCACATGCCTTGTTG 59.588 47.619 0.00 0.00 36.00 3.33
1992 2535 1.786937 TCAAACCCACATGCCTTGTT 58.213 45.000 0.00 0.00 36.00 2.83
1993 2536 1.786937 TTCAAACCCACATGCCTTGT 58.213 45.000 0.00 0.00 39.91 3.16
1994 2537 2.102925 ACTTTCAAACCCACATGCCTTG 59.897 45.455 0.00 0.00 0.00 3.61
1995 2538 2.397597 ACTTTCAAACCCACATGCCTT 58.602 42.857 0.00 0.00 0.00 4.35
1996 2539 2.086610 ACTTTCAAACCCACATGCCT 57.913 45.000 0.00 0.00 0.00 4.75
1997 2540 4.055360 GTTTACTTTCAAACCCACATGCC 58.945 43.478 0.00 0.00 33.21 4.40
1998 2541 3.733727 CGTTTACTTTCAAACCCACATGC 59.266 43.478 0.00 0.00 35.42 4.06
1999 2542 3.733727 GCGTTTACTTTCAAACCCACATG 59.266 43.478 0.00 0.00 35.42 3.21
2000 2543 3.243602 GGCGTTTACTTTCAAACCCACAT 60.244 43.478 0.00 0.00 35.42 3.21
2001 2544 2.099427 GGCGTTTACTTTCAAACCCACA 59.901 45.455 0.00 0.00 35.42 4.17
2002 2545 2.734670 GGCGTTTACTTTCAAACCCAC 58.265 47.619 0.00 0.00 35.42 4.61
2003 2546 1.334243 CGGCGTTTACTTTCAAACCCA 59.666 47.619 0.00 0.00 35.42 4.51
2004 2547 1.335233 CCGGCGTTTACTTTCAAACCC 60.335 52.381 6.01 0.00 35.42 4.11
2005 2548 1.335233 CCCGGCGTTTACTTTCAAACC 60.335 52.381 6.01 0.00 35.42 3.27
2006 2549 1.335233 CCCCGGCGTTTACTTTCAAAC 60.335 52.381 6.01 0.00 35.49 2.93
2007 2550 0.953003 CCCCGGCGTTTACTTTCAAA 59.047 50.000 6.01 0.00 0.00 2.69
2008 2551 0.890090 CCCCCGGCGTTTACTTTCAA 60.890 55.000 6.01 0.00 0.00 2.69
2009 2552 1.302671 CCCCCGGCGTTTACTTTCA 60.303 57.895 6.01 0.00 0.00 2.69
2010 2553 1.003476 TCCCCCGGCGTTTACTTTC 60.003 57.895 6.01 0.00 0.00 2.62
2011 2554 1.002990 CTCCCCCGGCGTTTACTTT 60.003 57.895 6.01 0.00 0.00 2.66
2012 2555 2.666812 CTCCCCCGGCGTTTACTT 59.333 61.111 6.01 0.00 0.00 2.24
2013 2556 3.396570 CCTCCCCCGGCGTTTACT 61.397 66.667 6.01 0.00 0.00 2.24
2014 2557 4.478371 CCCTCCCCCGGCGTTTAC 62.478 72.222 6.01 0.00 0.00 2.01
2021 2564 1.802377 TTTTTAACCCCCTCCCCCGG 61.802 60.000 0.00 0.00 0.00 5.73
2022 2565 1.775633 TTTTTAACCCCCTCCCCCG 59.224 57.895 0.00 0.00 0.00 5.73
2057 2600 8.547967 TCACTCATAGAAATTGGTTGAGTAAC 57.452 34.615 11.15 0.00 43.76 2.50
2099 2642 9.261180 AGGTTTCATGACATACTAATAATGACG 57.739 33.333 0.00 0.00 0.00 4.35
2118 2661 5.697473 TTCGATATGTTGCAAAGGTTTCA 57.303 34.783 0.00 0.00 0.00 2.69
2158 2701 3.033184 CCACCATGGGCATTTTAGTGAT 58.967 45.455 18.09 0.00 32.67 3.06
2160 2703 2.965572 CCACCATGGGCATTTTAGTG 57.034 50.000 18.09 1.14 32.67 2.74
2225 2772 6.994496 TCATTGTCTTCTCTTGTGAACTCAAT 59.006 34.615 0.00 0.00 31.22 2.57
2230 2777 7.697691 TCTTTTCATTGTCTTCTCTTGTGAAC 58.302 34.615 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.