>input_sequence_85710
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-------------------------------------------ATGCTGCTGGCCATGACGACGGGGATAGGCACCAGCT
TCTACTCCTGCTGCTACCGTGCCAAGCTGCGGGAGGAGCACGGGCTCGCGGAGAAGCCCTGCGGCGACTGCTGCGTCCAC
TTCTTCTGCGGCCTCTGCGGCCTCTCCCAGGAGTACCACGAGCTCAAGAACCGCGGCTTCGACATGAGCGCGGGATGGGA
AGCCAATGCGGAGAGGATGGGGAAGACCGCCGCGCCCTATGTGAACTCCGGGATGACTCGTTAG----------------
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>chr2D_1_TraesCS2D01G017200
AGTAGCTAGGTAGCCAGCGTACCAGCAGAAAGAGACGTCGACGGTGACTCCTTCCTTACTAGTGCGTGGTGAAGCCACGG
CCATCGCACTCAAGAGGCGACAGCATGCACAACCCATGA------CGTTAGCTCGTGACACCTGACATCTGTGGCTGGCG
CGCCTGAAAAACAGTCCGGGACGACCCTGCTCCGGCCGTCCTTAAATAGGCGCCCCACCGGACACACGGCCACTCACACA
AG--------TCCGGTCGGTGAGCTCCTTTCTGCAGGTAGTCCGGCGAGCTCTTACAAACCGCAAGTCTCTCCCAGCACC
GGCGGCAAGGCACGTCCCCATGGCGTCGTGGTCCACCGGCCTCTGCGGCTGCTTCCAC--------GACGCTCGGCGGCT
GTAAGCTTATAACTTCATCCCTCCCTCCCACCCTACTGATCAAGTAGAGAAACAGGACACTGCTATA-------------
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-TATGGTGCTTGTGATGAGCAGCACAAAGTGGTTTTTCAA--ACACACACGTTGGTTCATTACGCGGCGGTAAATCTGGT
TATCGACCGG----TAACCGGACGTCCGGACCTCACTGCTAGTGCTACCCCACGGTAAAAGCAGATACCGAGCAAAACAA
T-GTTTTCTTTTTTGCAAATTTTAAATTTAAATGCCAAACTTGTACTCCCTCCGTCCCATAATGCAAGATGTTTTTCCAA
GCTATAGTAGTTCAAAATTTGAATTTAAACACTAGACCTGTAGTAGTA--------------------------------
-----AGTAGTTCAAATATCGTAGCATCGATCTCTCATAATGTAAGATAAG---TAGTCTTGGCGTAGTGGTAAGACCGT
ACCTTGCTGCAGGCTGCCTGACCTTCTTCTGCCCGTGCGTTGCCTTCGGGAGGATCGCCGAGATCGTCGATAAGGGGGCG
ACATGTGAGTTTTTAATTTCTATATCTTTTTAAATTTCTGTCTCTGCACTTGATAGTAGCCGAAGGAGGAGTAACTCACT
ACCTACTCACTTCCCAGCATGCTGTGCGAGCGGGACGCTGTACATGCTGCTGGCCATGACGACGGGGATAGGCACCAGCT
TCTACTCCTGCTGCTACCGTGCCAAGCTGCGGGAGGAGCACGGGCTCGCGGAGAAGCCCTGCGGCGACTGCTGCGTCCAC
TTCTTCTGCGGCCTCTGCGGCCTCTCCCAGGAGTACCACGAGCTCAAGAACCGCGGCTTCGACATGAGCGCGGGATGGGA
AGCCAATGCGGAGAGGATGGGGAAGACCGCCGCGCCCTATGTGAACTCCGGGATGACTCGTTAGTC-GATCCAAATGCAG
TGCACACTTCTATTCAAGTA----------------------GTCAACATGCAGCTTCTATTCTAGTCTTGTTTCTTGTG
ATCCCTG----TAATATGTGTTAGTGAACCCTCAAAATCAAAATAAAAAGTGTGCAAGTGTGTTTTCCTATTGCAAGACG
TTTTTCGTCTAGCCTGCCACCTCACACCATGTGGCATGTAGTTTATGTGCAACTTATAACAAGATGTATTATCATAACTT
TGTGTGGAATAATAGACACATACTCCCGGCCGGT-----------------AATGAGTGAAATCATGTTACTGTATCCGT
GAAT----------GCTAGCTTAAGTCTTCAATGCAGTTAATGGGTGTTGTGACCGCATATTTGTATAGACGACTTGACT
TGGACATTGACATGAAAGCCTCTGAAGGATTGAAAATTGTGGATCTTGTCGGATGCGTAAGACCGGCTAACTGAATAAAG
ACCCATTCTAAGCTTAAAAGCGA-----GGAAGTTTTGGGACCCAAAGTTCCATATTTGAGCGCCATAGGTGCAAAAATG
TATGTTGTGAATTGCACCAGGCCCAACAGTGTGTTCACGGTAAATCTGCCAGCCAAGTATAGTGTGGACCCAACTCGAAG
ACAACTCGTGCGACCTGACAAGGGGTTTTCTCAAGTGGTGTTTTGACGAGGCAACAAGTGCAACTAGATGTATGCATGCA
ATGCACTGTTTTCCCCATCCCTTTTCTTATATTGGGTTTTCGTATGGCGTTTTCAACAAGGCATGTGGGTTTGAAAGTAA
ACGCCGGGGGAGGGGGTTAAAAAAAATTAACCGTTGCATGTTACTCAACCAATTTCTATGAGTGAGAGAAACATTAATTA
GCGTCATTATTAGTATGTCATGAAACCTTTGCAACATATCGAAAGGTTAAATATAGGCTTATCACTAAAATGCCCATGGT
GGGCTAGGCTATAAAAAGCCATGAGATGGAGAGTTTTTATA----AGTTGAATTGAGTTCACAAGAGAAGACAATGAAAA
GAGCATA
>chr2B_68
GGTAAAGCCAT-------------------------------------------------------------------GG
CCGTCGCACTCAGGACCCGACAGCATGCACAACCCATCTT------GTCAGCTCGTGACAACTGACATCTGTGGCTGGCG
CGCGCGAAAAACAGGCAGGGATGACCCCGCTCCGGCCGTCCTTAAATACGCGCCCCACCGGACACACGGCCGCTCACACA
CACTAGCTACTCCGGCGAGCTCTAACCTTTCTGCTGGTAGTCCGGCGATCTCCTACAAACCGCAAGTCTCTCCCAGCGCC
GGCGGCAAGGCACGTCCTCATGGCCTCGTGGTCAACCGGCCTCTGCGGCTGCTTCCAT--------GACA-TCGGCGGCT
GTAAGCTTGTAGCTTCATCCCTCCCTCCCACCCTCCTGTTCAAGTAGAGGAA-----CACTGCTACA-------------
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-TATGGTGCTTGTGATGAGCAGCACAAAGTGATTTTTCTACCACACACCCGTTGGTTAATTACTCTGCTGTAACTTTGGT
TATCGCCGGGTAATTAACCGGATTTCTGGC------------TGCTACCCCACGGTAAAAGCAGATATAGAGCAAAATGA
TGGTTTTTTTCTTTTCAAATTTGAAATTTAAACG--AGACTTGTACACCCTTCGATCCATATTAATTGTCTCTAAGTTAG
TATAAATTTTATTATTGTTGATTTAGAACAAAATTGTATTAAAATTGTACCAACTCAGCGACAATTAATATGGATCAGAG
GAAGTAGTAGTTAAAATATCATAGCATCGATCTCTCATAATGTAAGATAAC---TAGTCTTGACCTAGTGGTAAGAACGT
ACCATGCTGCAGGCTGCCTGACCTTCTTCTGCCCGTGCGTCGCCTTTGGGAGGATCGCCGAGATCGTCGACAAGGGGGCC
ATGTGTGAGTTTTCTTTCTGTCGTTGTACA--------------------------TAGCCGAACGAGAAGTAACCCACT
ACCTACTCACTTCCCAGCATGCTGTGCGAGCGGGACGCTCTACATGCTGCTGGCCATGACGACGGGGATAGGCACCGGCT
TCTACTCCTGCTGCTACCGCGCCAAGCTGCGCGAGGAGCACGGGCTCGCGGAGAAGCCCTGCGGCGACTGCTGCGTCCAC
TTCTTCTGCGGCCTCTGCGCCCTCTCCCAGGAGTACCGCGAGCTCAAGAACCGCGGCTTCGACATGAGCGCCGGATGGGA
AGCCAACGCGGAGAGGATGGGGAAGACCGCCGCGCCCTATGTGAACCCCGGGATGACTCGTTAGTC-GGTCAAATGCAAG
GAGGACAGGTACCGGCCTCCCCAATATATCCGGGCTGGGCATGTCAACATTCAGCTTCTGCTCTAGTCTTGTTTCTTCCG
ATCCCTG----TAATATGTGTTAGTGAAGCCTCAAAAT------AAGAAGTGTGCAAGTGTGTTTGCCTGTTGCAAGACG
TTCTTCGTCTAGCCGACCACCTCCCATCATGTGTCATGTACTTTATGTGCAACTTACAATAAGATGTACTCCCTCCGTTC
CTAAATATTTGTCTTTCTAGAGATTTCAACAAGTGACTACATACAAAACAAAATGAGTGAATCTACACTCTAAAATATGT
CTATATGCATCCGTATGTGGCAATATTTTAAATAGCCGGCTATAGCTCCGCTATAGCCTTTTCAGCAGGATGCCACTAAA
TGGTCGCCTTCACAAATAGCCCGCTATAACTGTTTTTGGAGGCCCGCCGCTATTTTCCATAGCCCGCTATTTAAAACATT
GGTACGTGGTAGTCCATTTGAGTGTTTATTCCAACTCCGAGAGGC-----------------------------------
-----------TTGCACCAGTCCGTAAATGGCAGGGGGAG----------------------------------------
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-----------GGGGGTTAAAAAAAATTAACCGTTGCATATTACTCAACCAATTTCTATGAGTGAGAGATACGTTAATTA
GTGTCATTATTAGTATGTCAGGAAACCTTTGCAACATATCAAAAGGTTAAATATAGGCTTGTTACTAAAATGCCCATGGT
GGGCTAGGCTATAAAAAGCCGTGA-ATGGAGAGTTTGTATACATAAGTTGATTTGAATTCACAAGAGAAGACAATGAAAA
GAGCATA
>chr2A_85
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----CGCACTCAGGAACCGACAGCATGCACAACTCATACCCATGTCGTTAGCTCGTGACAACTGACATCTGTGGCTGGCG
CGCGTGAAAAACAG--------------GCTCCGGCCGTTGTTAAATGCGCGCTCCACCGGACACACGGCCGCTCACACA
AG--------TCCGGTGAGCTGCTTTAATTCTTCAGCTAGTCTGGCGAGCTCTTACAAACTGCAAG--TCTCCCAGCAGC
GGCAGCAAGGCATCCA--CATGGCGTCGTGGTCCACCGGCCTCTGCGGCTGCTTCCACGAGACCACGACG-TTGGCGGCT
GTAAGCTAATAGCTTCATCCCTCCCTCCCACCCTCCTGTTAAAGTAGAGCAA-----CACGAAAAGTGGCTGCAGAGGCC
GAGCTCCATTGAGCTCTATATACATTTCTCAGCCAAAATACCTTTTTCATAACTCAAAAAAATCTGAAAAAAATGTTTTC
ATGTAAACATATACTTAAGTATGCGTGTACAAATTTTTATAAACATATGTATTCATATGTGATGTATATAAAAAAGACAA
ATACACAGATTGAAATAGGCTTTTTCTTTGTTGTATTTGTGTTAGATATTTGTCTTTTTTGTGTAGCATGCAAATGATAA
AATTAGTTACTGAAAATTTATACATAGTTAAAGAATATGCATATGTATTTTTTAAAAAAATTGGCATTTGTTGAAACTTT
TAAATATATTTTGATTTTTTTTTACAAAACGAGCTCCATGGAGCCCGGTCTTTGCAACGCCGCACTCTAGAGCAACACCG
CTATAGTGCTTGTGATGAGCAGCACAGAGTTATTTTTCTACCACA--CACGTTGGTTAGTTGCCCGGCGGTAAATTTGGT
TATCTCCGGG----TAACCGGATTTCTCGC------------TGCTACCCCACGGTAAAAGGAGGTACCGAGCACCT---
---TTTTTTTTGTTGCAAATTTTGAATTTGGACGCCGAACTTGTA-----------------------------------
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----TAGTAGTTAAAATACCGTAGCATCAGCCTCTCATAATGTAAGATAACTACTAGTCTTGGCGTAGTGGTAAGAACGT
AGCTTCCTGCAGGCTGCCTGACCTTCTTCTGCCCGTGCGTCGCCTTCGGGAGGATCGCCGAGATCGTCGACAAGGGGGCC
ATATGTGAGTTTTTTC-----------------ATTTCTGTCTCTGCACTTGATAGTAGCCGAAGGAGGAGTAACTCACT
ACCTACTCACTTGCCAGCATGCTGTGCGAGCGGGACGCTGTACATGCTTCTGGCCATGACGACGGTGGTGGGCACCGGCT
TCTACTCCTGCTGCTACCGTGCCAAGCTGCGGGAGGAACACGGGCTCGCCGAGAAGCCCTGCGGCGACTGCTGCGTCCAC
TTCTTCTGCGGCCTCTGCGCCCTCTCCCAGGAGTACCGCGAGCTCAAGAACCGTGGTTTCGACATGAGCGCGGGATGGGA
AGCCAACGCGGAGAGGATGGGGAAGACCGCCGCGCCCTATGTGAACTCCGGGATGACTCGTTAGGTGGATCCAAATGCAG
TGCACACTTCTATTCTAGTA----------------------GTCAACATGCAGCTTCTATTCTAGTCTTGTTTCTTGTG
ATCCATGTAATTAATATGTGTTAGTGAACCCTCAAAAT------AAAAAGTGTGCAAGGGTGTTTTCCTGTAACTCCG--
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--------------------------------------------------------GTGAAATCATGTTACTGTGTGCAA
GTGCGGGATGGGAAGCTAGCTTAAGTCTTGAATGCAGTTAATGGGTGTTGTGACCGCATATTTGTATGGACGACTTGACT
TGGACATTTACATGAAAGCCTCCGAAGGATTGAAAATTGCGGATCTTGTATGATGCGTAAGACCGGCTAACTGAATAAAG
ACCCATTCTAACCTTTAAAGGCAAACAGGGAAGTTTTGGGACCCAAAGTTCCGTGTTTGAGCGCCATAGGTGCAAAAATG
TATGTTGCGAATTGCAACAGGCCCAACAGTATGTTCACGGTAAATCTGCTAGCCAAGTATAGTGTGGACC----------
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>SNPs
S---SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--S---------S--SS--------------------SS---------------------S-------------------
---S----------S-S----S-----S--------------------S----------------------S--------
----------------SS-SSSSS--------------------------------------------------------
-----------------S----------------------------------------------------S---------
-----------S----------------------S---S----------S--SSSSS--------S--------------
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-------------------------------S------S------------------S-----S-----------S----
-----S-S--------------SS--S--SSSSSSSSSSSSS-----------------------------------SS-
-------S------------------------S-------------S----S--SS-----S-SSSS-SSSS-SSSSS-S
SS--S-S-SSS-S-SSS--SSSS-SS--SS-SSSSSSS-SS-SSSSSS--------------------------------
------------S-------------------------------------S-------------------------S---
----------------------------------------S-----------------------------S--------S
-S------------SS-S-S-SSS-S-SSSSSS-----------------------------------------------
----------------------------------------------------------------------------S---
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-------------------S-----------------S------------------------------------------
------S-------------------------------------------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------SSSSSS-------------------------S----------
--S-----------SS-------S--S------S------S---------------S--S--------S-SS-SSSSS-S
SSSSSSSSS-SSSSSS-SSSSSS-SS-SS-SS--------------------------------------------S---
-S---------------------------S-------------------------------------S------------
--------S-------------S----------------S----------S-----------------------------
--------------------S-------------------------------S-S-------------------------
-------S-----------------------------------------S--------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS----------------------------S-----------------------------S--S-------
-S------------------S-------------------S-------------------S-S-----------------
--------------------S---S-----------S--------------S----S-----------------------
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>forward_1105
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---------------------------------------------CTCCCTCCGTCCCATAATGC---------------
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>reverse_2211
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--------------------------------------------------GGATGCGTAAGACCGGCTAA----------
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