Multiple sequence alignment - TraesCS2D01G010600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G010600 chr2D 100.000 2649 0 0 1 2649 5314478 5317126 0.000000e+00 4892.0
1 TraesCS2D01G010600 chr2D 93.651 63 3 1 623 684 5314784 5314846 2.810000e-15 93.5
2 TraesCS2D01G010600 chr2D 93.651 63 3 1 307 369 5315100 5315161 2.810000e-15 93.5
3 TraesCS2D01G010600 chr2A 89.413 1124 49 29 494 1579 3954133 3955224 0.000000e+00 1352.0
4 TraesCS2D01G010600 chr2A 94.231 468 11 8 1 462 3945335 3945792 0.000000e+00 701.0
5 TraesCS2D01G010600 chr2A 82.197 528 55 25 1561 2071 3955240 3955745 4.080000e-113 418.0
6 TraesCS2D01G010600 chr2A 93.651 63 3 1 307 369 3954263 3954324 2.810000e-15 93.5
7 TraesCS2D01G010600 chr2A 85.000 60 7 2 2254 2313 632111703 632111760 2.850000e-05 60.2
8 TraesCS2D01G010600 chr2B 87.489 1175 83 37 368 1510 6252631 6253773 0.000000e+00 1297.0
9 TraesCS2D01G010600 chr2B 96.774 62 1 1 307 368 6252881 6252941 4.660000e-18 102.0
10 TraesCS2D01G010600 chr2B 86.957 69 6 2 2579 2646 84985810 84985744 1.020000e-09 75.0
11 TraesCS2D01G010600 chr1B 78.176 307 46 14 2118 2412 137451380 137451083 2.710000e-40 176.0
12 TraesCS2D01G010600 chr1B 86.957 69 6 2 2579 2646 61467296 61467362 1.020000e-09 75.0
13 TraesCS2D01G010600 chr1B 83.562 73 8 4 2117 2188 409683438 409683369 6.120000e-07 65.8
14 TraesCS2D01G010600 chr1B 83.099 71 7 2 2577 2646 668710756 668710822 2.850000e-05 60.2
15 TraesCS2D01G010600 chr1B 89.130 46 3 2 2601 2646 310933330 310933373 3.680000e-04 56.5
16 TraesCS2D01G010600 chr4B 72.097 620 109 43 1827 2417 580793680 580793096 7.700000e-26 128.0
17 TraesCS2D01G010600 chr4B 76.613 248 33 20 2108 2346 78802185 78801954 2.160000e-21 113.0
18 TraesCS2D01G010600 chr4B 100.000 31 0 0 2276 2306 654325664 654325694 1.020000e-04 58.4
19 TraesCS2D01G010600 chr3B 76.515 264 45 16 2123 2380 825965529 825965781 7.700000e-26 128.0
20 TraesCS2D01G010600 chr4D 75.427 293 49 18 1906 2190 107745756 107745479 1.290000e-23 121.0
21 TraesCS2D01G010600 chr4D 80.165 121 11 9 2437 2553 6028631 6028520 7.860000e-11 78.7
22 TraesCS2D01G010600 chr5D 90.625 64 4 2 2579 2642 418582316 418582377 1.690000e-12 84.2
23 TraesCS2D01G010600 chr6B 83.516 91 12 2 1994 2082 674156094 674156183 6.080000e-12 82.4
24 TraesCS2D01G010600 chr6B 100.000 28 0 0 1513 1540 696002656 696002683 5.000000e-03 52.8
25 TraesCS2D01G010600 chr1D 87.500 72 6 3 2577 2647 455091650 455091581 2.190000e-11 80.5
26 TraesCS2D01G010600 chr3D 85.135 74 6 5 2575 2646 444723021 444723091 1.320000e-08 71.3
27 TraesCS2D01G010600 chr1A 86.885 61 6 2 2430 2489 428983899 428983840 1.700000e-07 67.6
28 TraesCS2D01G010600 chr6D 79.167 96 14 6 2259 2351 41538580 41538488 7.920000e-06 62.1
29 TraesCS2D01G010600 chr7B 87.755 49 2 3 2117 2164 395751805 395751760 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G010600 chr2D 5314478 5317126 2648 False 1693.000000 4892 95.767333 1 2649 3 chr2D.!!$F1 2648
1 TraesCS2D01G010600 chr2A 3954133 3955745 1612 False 621.166667 1352 88.420333 307 2071 3 chr2A.!!$F3 1764
2 TraesCS2D01G010600 chr2B 6252631 6253773 1142 False 699.500000 1297 92.131500 307 1510 2 chr2B.!!$F1 1203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.034670 AGGCCTGGCTTCTTCATCAC 60.035 55.0 19.68 0.0 0.0 3.06 F
32 33 0.034670 GCCTGGCTTCTTCATCACCT 60.035 55.0 12.43 0.0 0.0 4.00 F
45 46 0.106769 ATCACCTGCACCAACACACA 60.107 50.0 0.00 0.0 0.0 3.72 F
46 47 0.106769 TCACCTGCACCAACACACAT 60.107 50.0 0.00 0.0 0.0 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1269 1329 0.105039 CGGGGCTCTCCATGAACTAC 59.895 60.000 0.0 0.0 37.22 2.73 R
1331 1391 0.179150 CAGCTCCTTCTTCTCCGTCG 60.179 60.000 0.0 0.0 0.00 5.12 R
1590 1700 0.184211 ACAACCCCCGCCCATATAAC 59.816 55.000 0.0 0.0 0.00 1.89 R
1766 1876 1.072173 TGTCATGAGGTGGGACAAGTG 59.928 52.381 0.0 0.0 44.16 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.759114 CCAGGCCTGGCTTCTTCA 59.241 61.111 38.39 0.00 44.73 3.02
27 28 1.305623 CCAGGCCTGGCTTCTTCAT 59.694 57.895 38.39 0.00 44.73 2.57
28 29 0.750911 CCAGGCCTGGCTTCTTCATC 60.751 60.000 38.39 0.00 44.73 2.92
29 30 0.034767 CAGGCCTGGCTTCTTCATCA 60.035 55.000 26.14 0.00 0.00 3.07
30 31 0.034670 AGGCCTGGCTTCTTCATCAC 60.035 55.000 19.68 0.00 0.00 3.06
31 32 1.034292 GGCCTGGCTTCTTCATCACC 61.034 60.000 19.68 0.00 0.00 4.02
32 33 0.034670 GCCTGGCTTCTTCATCACCT 60.035 55.000 12.43 0.00 0.00 4.00
33 34 1.747709 CCTGGCTTCTTCATCACCTG 58.252 55.000 0.00 0.00 0.00 4.00
34 35 1.093159 CTGGCTTCTTCATCACCTGC 58.907 55.000 0.00 0.00 0.00 4.85
35 36 0.401356 TGGCTTCTTCATCACCTGCA 59.599 50.000 0.00 0.00 0.00 4.41
36 37 0.807496 GGCTTCTTCATCACCTGCAC 59.193 55.000 0.00 0.00 0.00 4.57
37 38 0.807496 GCTTCTTCATCACCTGCACC 59.193 55.000 0.00 0.00 0.00 5.01
38 39 1.883638 GCTTCTTCATCACCTGCACCA 60.884 52.381 0.00 0.00 0.00 4.17
39 40 2.507484 CTTCTTCATCACCTGCACCAA 58.493 47.619 0.00 0.00 0.00 3.67
40 41 1.896220 TCTTCATCACCTGCACCAAC 58.104 50.000 0.00 0.00 0.00 3.77
41 42 1.142667 TCTTCATCACCTGCACCAACA 59.857 47.619 0.00 0.00 0.00 3.33
42 43 1.267806 CTTCATCACCTGCACCAACAC 59.732 52.381 0.00 0.00 0.00 3.32
43 44 0.182299 TCATCACCTGCACCAACACA 59.818 50.000 0.00 0.00 0.00 3.72
44 45 0.311790 CATCACCTGCACCAACACAC 59.688 55.000 0.00 0.00 0.00 3.82
45 46 0.106769 ATCACCTGCACCAACACACA 60.107 50.000 0.00 0.00 0.00 3.72
46 47 0.106769 TCACCTGCACCAACACACAT 60.107 50.000 0.00 0.00 0.00 3.21
47 48 0.746063 CACCTGCACCAACACACATT 59.254 50.000 0.00 0.00 0.00 2.71
48 49 1.136695 CACCTGCACCAACACACATTT 59.863 47.619 0.00 0.00 0.00 2.32
49 50 1.408702 ACCTGCACCAACACACATTTC 59.591 47.619 0.00 0.00 0.00 2.17
50 51 1.408340 CCTGCACCAACACACATTTCA 59.592 47.619 0.00 0.00 0.00 2.69
51 52 2.544277 CCTGCACCAACACACATTTCAG 60.544 50.000 0.00 0.00 0.00 3.02
52 53 2.098614 TGCACCAACACACATTTCAGT 58.901 42.857 0.00 0.00 0.00 3.41
53 54 2.495270 TGCACCAACACACATTTCAGTT 59.505 40.909 0.00 0.00 0.00 3.16
54 55 3.115554 GCACCAACACACATTTCAGTTC 58.884 45.455 0.00 0.00 0.00 3.01
55 56 3.362295 CACCAACACACATTTCAGTTCG 58.638 45.455 0.00 0.00 0.00 3.95
56 57 2.357637 ACCAACACACATTTCAGTTCGG 59.642 45.455 0.00 0.00 0.00 4.30
57 58 2.357637 CCAACACACATTTCAGTTCGGT 59.642 45.455 0.00 0.00 0.00 4.69
58 59 3.362295 CAACACACATTTCAGTTCGGTG 58.638 45.455 0.00 0.00 35.66 4.94
59 60 1.946768 ACACACATTTCAGTTCGGTGG 59.053 47.619 0.00 0.00 33.91 4.61
60 61 1.266718 CACACATTTCAGTTCGGTGGG 59.733 52.381 0.00 0.00 33.91 4.61
61 62 0.240945 CACATTTCAGTTCGGTGGGC 59.759 55.000 0.00 0.00 0.00 5.36
62 63 0.110486 ACATTTCAGTTCGGTGGGCT 59.890 50.000 0.00 0.00 0.00 5.19
63 64 0.523072 CATTTCAGTTCGGTGGGCTG 59.477 55.000 0.00 0.00 0.00 4.85
64 65 0.609131 ATTTCAGTTCGGTGGGCTGG 60.609 55.000 0.00 0.00 0.00 4.85
65 66 2.690653 TTTCAGTTCGGTGGGCTGGG 62.691 60.000 0.00 0.00 0.00 4.45
66 67 3.636231 CAGTTCGGTGGGCTGGGA 61.636 66.667 0.00 0.00 0.00 4.37
67 68 3.637273 AGTTCGGTGGGCTGGGAC 61.637 66.667 0.00 0.00 0.00 4.46
68 69 4.717313 GTTCGGTGGGCTGGGACC 62.717 72.222 0.00 0.00 0.00 4.46
82 83 3.719816 GGACCGGTCCTTGAAGTTT 57.280 52.632 40.89 0.00 46.16 2.66
83 84 1.235724 GGACCGGTCCTTGAAGTTTG 58.764 55.000 40.89 0.00 46.16 2.93
84 85 0.591659 GACCGGTCCTTGAAGTTTGC 59.408 55.000 24.75 0.00 0.00 3.68
85 86 0.822121 ACCGGTCCTTGAAGTTTGCC 60.822 55.000 0.00 0.00 0.00 4.52
86 87 1.574428 CGGTCCTTGAAGTTTGCCG 59.426 57.895 0.00 0.00 0.00 5.69
87 88 1.164041 CGGTCCTTGAAGTTTGCCGT 61.164 55.000 0.00 0.00 33.87 5.68
88 89 1.029681 GGTCCTTGAAGTTTGCCGTT 58.970 50.000 0.00 0.00 0.00 4.44
89 90 1.269051 GGTCCTTGAAGTTTGCCGTTG 60.269 52.381 0.00 0.00 0.00 4.10
90 91 1.028905 TCCTTGAAGTTTGCCGTTGG 58.971 50.000 0.00 0.00 0.00 3.77
101 102 1.515487 GCCGTTGGCCCAATTTAGG 59.485 57.895 0.00 2.67 44.06 2.69
110 111 2.919666 CCCAATTTAGGCAGTCGTTG 57.080 50.000 0.00 0.00 0.00 4.10
111 112 2.159382 CCCAATTTAGGCAGTCGTTGT 58.841 47.619 0.00 0.00 0.00 3.32
112 113 2.095263 CCCAATTTAGGCAGTCGTTGTG 60.095 50.000 0.00 0.00 0.00 3.33
113 114 2.552315 CCAATTTAGGCAGTCGTTGTGT 59.448 45.455 0.00 0.00 0.00 3.72
114 115 3.364964 CCAATTTAGGCAGTCGTTGTGTC 60.365 47.826 0.00 0.00 0.00 3.67
115 116 1.873698 TTTAGGCAGTCGTTGTGTCC 58.126 50.000 0.00 0.00 0.00 4.02
116 117 0.753867 TTAGGCAGTCGTTGTGTCCA 59.246 50.000 0.00 0.00 0.00 4.02
117 118 0.317160 TAGGCAGTCGTTGTGTCCAG 59.683 55.000 0.00 0.00 0.00 3.86
118 119 1.961277 GGCAGTCGTTGTGTCCAGG 60.961 63.158 0.00 0.00 0.00 4.45
119 120 1.069090 GCAGTCGTTGTGTCCAGGA 59.931 57.895 0.00 0.00 0.00 3.86
120 121 0.946221 GCAGTCGTTGTGTCCAGGAG 60.946 60.000 0.00 0.00 0.00 3.69
121 122 0.319900 CAGTCGTTGTGTCCAGGAGG 60.320 60.000 0.00 0.00 0.00 4.30
122 123 1.668151 GTCGTTGTGTCCAGGAGGC 60.668 63.158 0.00 0.00 33.74 4.70
123 124 2.137528 TCGTTGTGTCCAGGAGGCA 61.138 57.895 0.00 0.00 33.74 4.75
124 125 1.669115 CGTTGTGTCCAGGAGGCAG 60.669 63.158 0.00 0.00 33.74 4.85
125 126 1.754745 GTTGTGTCCAGGAGGCAGA 59.245 57.895 0.00 0.00 33.74 4.26
126 127 0.108585 GTTGTGTCCAGGAGGCAGAA 59.891 55.000 0.00 0.00 33.74 3.02
127 128 0.397941 TTGTGTCCAGGAGGCAGAAG 59.602 55.000 0.00 0.00 33.74 2.85
128 129 1.376553 GTGTCCAGGAGGCAGAAGC 60.377 63.158 0.00 0.00 41.10 3.86
149 150 3.798511 GGCTACACCTGCCCTCCC 61.799 72.222 0.00 0.00 44.32 4.30
150 151 3.798511 GCTACACCTGCCCTCCCC 61.799 72.222 0.00 0.00 0.00 4.81
151 152 2.041265 CTACACCTGCCCTCCCCT 59.959 66.667 0.00 0.00 0.00 4.79
152 153 2.040606 TACACCTGCCCTCCCCTC 59.959 66.667 0.00 0.00 0.00 4.30
153 154 2.822643 CTACACCTGCCCTCCCCTCA 62.823 65.000 0.00 0.00 0.00 3.86
154 155 2.194951 TACACCTGCCCTCCCCTCAT 62.195 60.000 0.00 0.00 0.00 2.90
155 156 1.384502 CACCTGCCCTCCCCTCATA 60.385 63.158 0.00 0.00 0.00 2.15
156 157 0.988145 CACCTGCCCTCCCCTCATAA 60.988 60.000 0.00 0.00 0.00 1.90
157 158 0.253630 ACCTGCCCTCCCCTCATAAA 60.254 55.000 0.00 0.00 0.00 1.40
158 159 0.926293 CCTGCCCTCCCCTCATAAAA 59.074 55.000 0.00 0.00 0.00 1.52
159 160 1.287739 CCTGCCCTCCCCTCATAAAAA 59.712 52.381 0.00 0.00 0.00 1.94
181 182 4.671406 GCGATTGCTGCCCAAAAA 57.329 50.000 0.00 0.00 36.92 1.94
182 183 2.153039 GCGATTGCTGCCCAAAAAC 58.847 52.632 0.00 0.00 36.92 2.43
183 184 0.319813 GCGATTGCTGCCCAAAAACT 60.320 50.000 0.00 0.00 36.92 2.66
184 185 1.067915 GCGATTGCTGCCCAAAAACTA 60.068 47.619 0.00 0.00 36.92 2.24
185 186 2.595386 CGATTGCTGCCCAAAAACTAC 58.405 47.619 0.00 0.00 36.92 2.73
186 187 2.671070 CGATTGCTGCCCAAAAACTACC 60.671 50.000 0.00 0.00 36.92 3.18
187 188 1.781786 TTGCTGCCCAAAAACTACCA 58.218 45.000 0.00 0.00 0.00 3.25
188 189 1.036707 TGCTGCCCAAAAACTACCAC 58.963 50.000 0.00 0.00 0.00 4.16
189 190 1.328279 GCTGCCCAAAAACTACCACT 58.672 50.000 0.00 0.00 0.00 4.00
190 191 1.686587 GCTGCCCAAAAACTACCACTT 59.313 47.619 0.00 0.00 0.00 3.16
191 192 2.102420 GCTGCCCAAAAACTACCACTTT 59.898 45.455 0.00 0.00 0.00 2.66
192 193 3.431626 GCTGCCCAAAAACTACCACTTTT 60.432 43.478 0.00 0.00 0.00 2.27
193 194 4.119136 CTGCCCAAAAACTACCACTTTTG 58.881 43.478 0.00 0.00 40.59 2.44
194 195 3.515901 TGCCCAAAAACTACCACTTTTGT 59.484 39.130 6.54 0.00 39.71 2.83
195 196 4.020128 TGCCCAAAAACTACCACTTTTGTT 60.020 37.500 6.54 0.00 39.71 2.83
196 197 4.938832 GCCCAAAAACTACCACTTTTGTTT 59.061 37.500 6.54 0.00 39.71 2.83
197 198 5.413213 GCCCAAAAACTACCACTTTTGTTTT 59.587 36.000 6.54 0.00 42.19 2.43
198 199 6.621812 GCCCAAAAACTACCACTTTTGTTTTG 60.622 38.462 0.00 0.00 40.36 2.44
199 200 6.310960 CCAAAAACTACCACTTTTGTTTTGC 58.689 36.000 0.00 0.00 40.36 3.68
200 201 5.771602 AAAACTACCACTTTTGTTTTGCG 57.228 34.783 0.00 0.00 39.94 4.85
201 202 3.430333 ACTACCACTTTTGTTTTGCGG 57.570 42.857 0.00 0.00 0.00 5.69
202 203 2.100087 ACTACCACTTTTGTTTTGCGGG 59.900 45.455 0.00 0.00 0.00 6.13
203 204 0.176910 ACCACTTTTGTTTTGCGGGG 59.823 50.000 0.00 0.00 0.00 5.73
204 205 0.461961 CCACTTTTGTTTTGCGGGGA 59.538 50.000 0.00 0.00 0.00 4.81
205 206 1.566404 CACTTTTGTTTTGCGGGGAC 58.434 50.000 0.00 0.00 0.00 4.46
228 229 6.413783 CCAAAAATTACCACTTTGGGTACT 57.586 37.500 9.76 0.00 43.53 2.73
229 230 7.527568 CCAAAAATTACCACTTTGGGTACTA 57.472 36.000 9.76 0.00 43.53 1.82
230 231 7.599171 CCAAAAATTACCACTTTGGGTACTAG 58.401 38.462 9.76 0.00 43.53 2.57
231 232 7.449086 CCAAAAATTACCACTTTGGGTACTAGA 59.551 37.037 9.76 0.00 43.53 2.43
232 233 8.852135 CAAAAATTACCACTTTGGGTACTAGAA 58.148 33.333 0.00 0.00 42.94 2.10
233 234 8.999905 AAAATTACCACTTTGGGTACTAGAAA 57.000 30.769 0.00 0.00 42.94 2.52
234 235 8.999905 AAATTACCACTTTGGGTACTAGAAAA 57.000 30.769 0.00 0.00 42.94 2.29
235 236 7.991084 ATTACCACTTTGGGTACTAGAAAAC 57.009 36.000 0.00 0.00 42.94 2.43
236 237 5.376756 ACCACTTTGGGTACTAGAAAACA 57.623 39.130 0.00 0.00 43.37 2.83
237 238 5.948842 ACCACTTTGGGTACTAGAAAACAT 58.051 37.500 0.00 0.00 43.37 2.71
238 239 6.370453 ACCACTTTGGGTACTAGAAAACATT 58.630 36.000 0.00 0.00 43.37 2.71
239 240 6.489022 ACCACTTTGGGTACTAGAAAACATTC 59.511 38.462 0.00 0.00 43.37 2.67
240 241 6.488683 CCACTTTGGGTACTAGAAAACATTCA 59.511 38.462 0.00 0.00 32.67 2.57
241 242 7.176690 CCACTTTGGGTACTAGAAAACATTCAT 59.823 37.037 0.00 0.00 32.67 2.57
242 243 8.023128 CACTTTGGGTACTAGAAAACATTCATG 58.977 37.037 0.00 0.00 0.00 3.07
243 244 6.509418 TTGGGTACTAGAAAACATTCATGC 57.491 37.500 0.00 0.00 0.00 4.06
244 245 5.815581 TGGGTACTAGAAAACATTCATGCT 58.184 37.500 0.00 0.00 0.00 3.79
245 246 5.647658 TGGGTACTAGAAAACATTCATGCTG 59.352 40.000 0.00 0.00 0.00 4.41
246 247 5.880332 GGGTACTAGAAAACATTCATGCTGA 59.120 40.000 0.00 0.00 0.00 4.26
247 248 6.183360 GGGTACTAGAAAACATTCATGCTGAC 60.183 42.308 0.00 0.00 0.00 3.51
248 249 6.371548 GGTACTAGAAAACATTCATGCTGACA 59.628 38.462 0.00 0.00 0.00 3.58
249 250 7.066284 GGTACTAGAAAACATTCATGCTGACAT 59.934 37.037 0.00 0.00 36.79 3.06
264 265 7.686438 ATGCTGACATGTTGTAGTTATTCAA 57.314 32.000 0.00 0.00 34.35 2.69
265 266 7.503521 TGCTGACATGTTGTAGTTATTCAAA 57.496 32.000 0.00 0.00 0.00 2.69
266 267 7.935520 TGCTGACATGTTGTAGTTATTCAAAA 58.064 30.769 0.00 0.00 0.00 2.44
267 268 8.409371 TGCTGACATGTTGTAGTTATTCAAAAA 58.591 29.630 0.00 0.00 0.00 1.94
295 296 7.698506 AATCTGACATGATATAGCCATTTGG 57.301 36.000 0.00 0.00 38.53 3.28
296 297 6.191657 TCTGACATGATATAGCCATTTGGT 57.808 37.500 0.00 0.00 37.57 3.67
297 298 6.604171 TCTGACATGATATAGCCATTTGGTT 58.396 36.000 0.00 0.00 37.57 3.67
298 299 7.062322 TCTGACATGATATAGCCATTTGGTTT 58.938 34.615 0.00 0.00 37.57 3.27
299 300 7.560991 TCTGACATGATATAGCCATTTGGTTTT 59.439 33.333 0.00 0.00 37.57 2.43
300 301 8.076910 TGACATGATATAGCCATTTGGTTTTT 57.923 30.769 0.00 0.00 37.57 1.94
325 326 8.984891 TTTTAAGACAATGATGTAGCCATTTG 57.015 30.769 0.00 0.00 40.74 2.32
326 327 5.587388 AAGACAATGATGTAGCCATTTGG 57.413 39.130 0.00 0.00 40.74 3.28
327 328 4.603131 AGACAATGATGTAGCCATTTGGT 58.397 39.130 0.00 0.00 40.74 3.67
328 329 4.400251 AGACAATGATGTAGCCATTTGGTG 59.600 41.667 0.00 0.00 40.74 4.17
329 330 4.343231 ACAATGATGTAGCCATTTGGTGA 58.657 39.130 0.00 0.00 38.24 4.02
330 331 4.771577 ACAATGATGTAGCCATTTGGTGAA 59.228 37.500 0.00 0.00 38.24 3.18
331 332 5.245751 ACAATGATGTAGCCATTTGGTGAAA 59.754 36.000 0.00 0.00 38.24 2.69
332 333 6.070653 ACAATGATGTAGCCATTTGGTGAAAT 60.071 34.615 0.00 0.00 38.24 2.17
333 334 5.999205 TGATGTAGCCATTTGGTGAAATT 57.001 34.783 0.00 0.00 37.57 1.82
334 335 6.357579 TGATGTAGCCATTTGGTGAAATTT 57.642 33.333 0.00 0.00 37.57 1.82
335 336 6.767456 TGATGTAGCCATTTGGTGAAATTTT 58.233 32.000 0.00 0.00 37.57 1.82
336 337 7.901029 TGATGTAGCCATTTGGTGAAATTTTA 58.099 30.769 0.00 0.00 37.57 1.52
337 338 8.034215 TGATGTAGCCATTTGGTGAAATTTTAG 58.966 33.333 0.00 0.00 37.57 1.85
338 339 6.162777 TGTAGCCATTTGGTGAAATTTTAGC 58.837 36.000 5.28 5.28 37.57 3.09
339 340 5.226194 AGCCATTTGGTGAAATTTTAGCA 57.774 34.783 10.45 10.45 37.57 3.49
340 341 5.619220 AGCCATTTGGTGAAATTTTAGCAA 58.381 33.333 19.87 19.87 37.57 3.91
341 342 6.060788 AGCCATTTGGTGAAATTTTAGCAAA 58.939 32.000 30.24 30.24 44.96 3.68
342 343 6.545298 AGCCATTTGGTGAAATTTTAGCAAAA 59.455 30.769 31.16 20.26 44.33 2.44
343 344 7.231115 AGCCATTTGGTGAAATTTTAGCAAAAT 59.769 29.630 31.16 21.16 44.33 1.82
344 345 8.510505 GCCATTTGGTGAAATTTTAGCAAAATA 58.489 29.630 31.16 17.63 44.33 1.40
349 350 9.770097 TTGGTGAAATTTTAGCAAAATATCACA 57.230 25.926 21.05 0.34 40.05 3.58
350 351 9.202273 TGGTGAAATTTTAGCAAAATATCACAC 57.798 29.630 11.91 1.18 40.05 3.82
351 352 8.372521 GGTGAAATTTTAGCAAAATATCACACG 58.627 33.333 7.23 0.00 40.05 4.49
352 353 9.123709 GTGAAATTTTAGCAAAATATCACACGA 57.876 29.630 7.11 0.00 40.05 4.35
353 354 9.123709 TGAAATTTTAGCAAAATATCACACGAC 57.876 29.630 7.11 0.00 40.05 4.34
354 355 8.460831 AAATTTTAGCAAAATATCACACGACC 57.539 30.769 7.11 0.00 40.05 4.79
355 356 5.554822 TTTAGCAAAATATCACACGACCC 57.445 39.130 0.00 0.00 0.00 4.46
356 357 3.066291 AGCAAAATATCACACGACCCA 57.934 42.857 0.00 0.00 0.00 4.51
357 358 3.009723 AGCAAAATATCACACGACCCAG 58.990 45.455 0.00 0.00 0.00 4.45
358 359 3.006940 GCAAAATATCACACGACCCAGA 58.993 45.455 0.00 0.00 0.00 3.86
359 360 3.627577 GCAAAATATCACACGACCCAGAT 59.372 43.478 0.00 0.00 0.00 2.90
360 361 4.814234 GCAAAATATCACACGACCCAGATA 59.186 41.667 0.00 0.00 0.00 1.98
361 362 5.470098 GCAAAATATCACACGACCCAGATAT 59.530 40.000 0.00 0.00 35.74 1.63
362 363 6.566564 GCAAAATATCACACGACCCAGATATG 60.567 42.308 0.00 0.00 34.77 1.78
363 364 5.808366 AATATCACACGACCCAGATATGT 57.192 39.130 0.00 0.00 34.77 2.29
364 365 2.959507 TCACACGACCCAGATATGTG 57.040 50.000 0.00 0.00 41.62 3.21
365 366 2.176045 TCACACGACCCAGATATGTGT 58.824 47.619 0.00 0.00 44.02 3.72
366 367 2.565391 TCACACGACCCAGATATGTGTT 59.435 45.455 0.00 0.00 41.49 3.32
367 368 2.930040 CACACGACCCAGATATGTGTTC 59.070 50.000 0.00 0.00 41.49 3.18
368 369 2.093658 ACACGACCCAGATATGTGTTCC 60.094 50.000 0.00 0.00 40.63 3.62
369 370 2.093711 CACGACCCAGATATGTGTTCCA 60.094 50.000 0.00 0.00 0.00 3.53
370 371 2.569853 ACGACCCAGATATGTGTTCCAA 59.430 45.455 0.00 0.00 0.00 3.53
371 372 3.199946 ACGACCCAGATATGTGTTCCAAT 59.800 43.478 0.00 0.00 0.00 3.16
410 413 0.248990 CACCTGCGCAACACACATTT 60.249 50.000 13.05 0.00 0.00 2.32
418 421 2.034675 CGCAACACACATTTCAGTTTGC 60.035 45.455 0.00 0.00 0.00 3.68
447 450 1.616865 CACCGGTCCTTGAACTCTGTA 59.383 52.381 2.59 0.00 0.00 2.74
449 452 1.893801 CCGGTCCTTGAACTCTGTAGT 59.106 52.381 0.00 0.00 37.65 2.73
451 454 3.318017 CGGTCCTTGAACTCTGTAGTTG 58.682 50.000 0.00 0.00 46.09 3.16
453 456 3.067833 GTCCTTGAACTCTGTAGTTGGC 58.932 50.000 0.00 0.00 46.09 4.52
457 460 1.771854 TGAACTCTGTAGTTGGCCCAA 59.228 47.619 0.00 0.00 46.09 4.12
458 461 2.375174 TGAACTCTGTAGTTGGCCCAAT 59.625 45.455 0.00 0.00 46.09 3.16
459 462 2.789409 ACTCTGTAGTTGGCCCAATC 57.211 50.000 0.00 0.00 29.00 2.67
460 463 2.269940 ACTCTGTAGTTGGCCCAATCT 58.730 47.619 0.00 1.53 29.00 2.40
461 464 2.644798 ACTCTGTAGTTGGCCCAATCTT 59.355 45.455 0.00 0.00 29.00 2.40
462 465 3.844211 ACTCTGTAGTTGGCCCAATCTTA 59.156 43.478 0.00 0.00 29.00 2.10
472 475 1.838112 CCCAATCTTAGGCAGTTGCA 58.162 50.000 6.43 0.00 44.36 4.08
473 476 1.747355 CCCAATCTTAGGCAGTTGCAG 59.253 52.381 6.43 0.00 44.36 4.41
474 477 2.440409 CCAATCTTAGGCAGTTGCAGT 58.560 47.619 6.43 0.00 44.36 4.40
475 478 2.163010 CCAATCTTAGGCAGTTGCAGTG 59.837 50.000 6.43 0.00 44.36 3.66
476 479 2.816087 CAATCTTAGGCAGTTGCAGTGT 59.184 45.455 6.43 0.00 44.36 3.55
590 593 5.916318 TGGAACTTGCAGAAAACATTCATT 58.084 33.333 0.00 0.00 0.00 2.57
676 681 5.050091 GCAAAATATCACACGACCCAGATAG 60.050 44.000 0.00 0.00 0.00 2.08
694 703 7.038017 CCCAGATAGTTGTTCCTATACATCCAT 60.038 40.741 0.00 0.00 0.00 3.41
695 704 8.037758 CCAGATAGTTGTTCCTATACATCCATC 58.962 40.741 0.00 0.00 0.00 3.51
696 705 8.037758 CAGATAGTTGTTCCTATACATCCATCC 58.962 40.741 0.00 0.00 0.00 3.51
697 706 7.734865 AGATAGTTGTTCCTATACATCCATCCA 59.265 37.037 0.00 0.00 0.00 3.41
724 733 2.350868 CCTCGCCTGTCACTATATGTCG 60.351 54.545 0.00 0.00 0.00 4.35
839 850 1.080025 GTGGGTGAGCTACGTGGAC 60.080 63.158 1.81 0.00 0.00 4.02
840 851 1.228769 TGGGTGAGCTACGTGGACT 60.229 57.895 1.81 0.00 0.00 3.85
881 892 3.103742 AGGCTCTTTCTTGCTAGCTAGT 58.896 45.455 22.75 1.48 35.30 2.57
1035 1058 5.758296 ACGCAGTGAAGTTCAGATAAGAAAA 59.242 36.000 5.62 0.00 42.51 2.29
1036 1059 6.260050 ACGCAGTGAAGTTCAGATAAGAAAAA 59.740 34.615 5.62 0.00 42.51 1.94
1171 1202 2.153645 CAACAAGGTACATGCAGCTCA 58.846 47.619 0.00 0.00 0.00 4.26
1172 1203 2.751259 CAACAAGGTACATGCAGCTCAT 59.249 45.455 0.00 0.00 35.31 2.90
1173 1204 3.912496 ACAAGGTACATGCAGCTCATA 57.088 42.857 0.00 0.00 33.19 2.15
1174 1205 4.220693 ACAAGGTACATGCAGCTCATAA 57.779 40.909 0.00 0.00 33.19 1.90
1192 1223 5.065914 TCATAACTCATAAGCTTCATGGCC 58.934 41.667 0.00 0.00 0.00 5.36
1268 1328 6.643388 TGCTCTCTATATTTGTTCTCTGCAA 58.357 36.000 0.00 0.00 0.00 4.08
1269 1329 6.760298 TGCTCTCTATATTTGTTCTCTGCAAG 59.240 38.462 0.00 0.00 0.00 4.01
1270 1330 6.760770 GCTCTCTATATTTGTTCTCTGCAAGT 59.239 38.462 0.00 0.00 33.76 3.16
1271 1331 7.923344 GCTCTCTATATTTGTTCTCTGCAAGTA 59.077 37.037 0.00 0.00 33.76 2.24
1280 1340 4.040339 TGTTCTCTGCAAGTAGTTCATGGA 59.960 41.667 0.00 0.00 33.76 3.41
1299 1359 1.747745 GAGCCCCGTACCGCAAATT 60.748 57.895 0.00 0.00 0.00 1.82
1330 1390 1.219124 GATGGCGGCAGAAGACAGA 59.781 57.895 19.29 0.00 0.00 3.41
1331 1391 1.078848 ATGGCGGCAGAAGACAGAC 60.079 57.895 19.29 0.00 0.00 3.51
1332 1392 2.811317 GGCGGCAGAAGACAGACG 60.811 66.667 3.07 0.00 37.11 4.18
1333 1393 2.258591 GCGGCAGAAGACAGACGA 59.741 61.111 0.00 0.00 36.11 4.20
1458 1530 1.132689 ACCCTTGTCCCTCTCTGAAGT 60.133 52.381 0.00 0.00 0.00 3.01
1459 1531 1.277557 CCCTTGTCCCTCTCTGAAGTG 59.722 57.143 0.00 0.00 0.00 3.16
1460 1532 1.277557 CCTTGTCCCTCTCTGAAGTGG 59.722 57.143 0.00 0.00 36.17 4.00
1462 1534 1.342074 TGTCCCTCTCTGAAGTGGTG 58.658 55.000 0.00 0.00 34.87 4.17
1463 1535 1.133167 TGTCCCTCTCTGAAGTGGTGA 60.133 52.381 0.00 0.00 34.87 4.02
1464 1536 2.183679 GTCCCTCTCTGAAGTGGTGAT 58.816 52.381 0.00 0.00 34.87 3.06
1465 1537 2.569404 GTCCCTCTCTGAAGTGGTGATT 59.431 50.000 0.00 0.00 34.87 2.57
1466 1538 3.008485 GTCCCTCTCTGAAGTGGTGATTT 59.992 47.826 0.00 0.00 34.87 2.17
1498 1570 1.826720 TGCATGGGCTCCTTGATTTTC 59.173 47.619 10.15 0.00 41.91 2.29
1501 1573 3.740141 GCATGGGCTCCTTGATTTTCATG 60.740 47.826 10.15 0.00 36.96 3.07
1579 1655 8.137437 ACTTTCCAACACATAGATTTTTGTCTG 58.863 33.333 0.00 0.00 0.00 3.51
1590 1700 2.154854 TTTTGTCTGTGAGAGGCTCG 57.845 50.000 9.22 0.00 32.35 5.03
1604 1714 1.375523 GCTCGTTATATGGGCGGGG 60.376 63.158 0.00 0.00 0.00 5.73
1627 1737 4.909880 GGTTGTGTCTTTTATTTCACGAGC 59.090 41.667 0.00 0.00 36.19 5.03
1631 1741 5.163992 TGTGTCTTTTATTTCACGAGCGATC 60.164 40.000 0.00 0.00 34.08 3.69
1632 1742 4.031314 TGTCTTTTATTTCACGAGCGATCG 59.969 41.667 23.12 23.12 39.31 3.69
1637 1747 6.578020 TTTATTTCACGAGCGATCGTTAAT 57.422 33.333 27.99 26.89 44.63 1.40
1641 1751 2.106418 CACGAGCGATCGTTAATTCGA 58.894 47.619 27.99 0.78 44.63 3.71
1647 1757 6.020440 ACGAGCGATCGTTAATTCGAAAATAA 60.020 34.615 24.79 2.17 44.63 1.40
1720 1830 7.110155 ACTCGATAATTAATGTGTTCCCTGTT 58.890 34.615 0.00 0.00 0.00 3.16
1723 1833 8.798402 TCGATAATTAATGTGTTCCCTGTTTTT 58.202 29.630 0.00 0.00 0.00 1.94
1724 1834 9.072294 CGATAATTAATGTGTTCCCTGTTTTTC 57.928 33.333 0.00 0.00 0.00 2.29
1725 1835 9.921637 GATAATTAATGTGTTCCCTGTTTTTCA 57.078 29.630 0.00 0.00 0.00 2.69
1736 1846 3.925913 CCCTGTTTTTCATGCATTTACGG 59.074 43.478 0.00 0.00 0.00 4.02
1766 1876 4.037923 ACATTTGTCCCAACTCATGACAAC 59.962 41.667 3.97 0.00 45.68 3.32
1767 1877 3.289407 TTGTCCCAACTCATGACAACA 57.711 42.857 0.00 0.00 42.36 3.33
1768 1878 2.571212 TGTCCCAACTCATGACAACAC 58.429 47.619 0.00 0.00 36.16 3.32
1769 1879 2.172505 TGTCCCAACTCATGACAACACT 59.827 45.455 0.00 0.00 36.16 3.55
1770 1880 3.214328 GTCCCAACTCATGACAACACTT 58.786 45.455 0.00 0.00 0.00 3.16
1771 1881 3.003689 GTCCCAACTCATGACAACACTTG 59.996 47.826 0.00 0.00 0.00 3.16
1780 1890 3.800826 ACAACACTTGTCCCACCTC 57.199 52.632 0.00 0.00 40.56 3.85
1781 1891 0.916086 ACAACACTTGTCCCACCTCA 59.084 50.000 0.00 0.00 40.56 3.86
1782 1892 1.494721 ACAACACTTGTCCCACCTCAT 59.505 47.619 0.00 0.00 40.56 2.90
1783 1893 1.881973 CAACACTTGTCCCACCTCATG 59.118 52.381 0.00 0.00 0.00 3.07
1784 1894 1.434188 ACACTTGTCCCACCTCATGA 58.566 50.000 0.00 0.00 0.00 3.07
1785 1895 1.072331 ACACTTGTCCCACCTCATGAC 59.928 52.381 0.00 0.00 0.00 3.06
1786 1896 1.072173 CACTTGTCCCACCTCATGACA 59.928 52.381 0.00 0.00 37.24 3.58
1787 1897 1.774254 ACTTGTCCCACCTCATGACAA 59.226 47.619 0.00 0.00 44.32 3.18
1796 1906 3.997021 CCACCTCATGACAACACTTACTC 59.003 47.826 0.00 0.00 0.00 2.59
1798 1908 4.449068 CACCTCATGACAACACTTACTCAC 59.551 45.833 0.00 0.00 0.00 3.51
1801 1911 5.527214 CCTCATGACAACACTTACTCACAAA 59.473 40.000 0.00 0.00 0.00 2.83
1821 1931 1.549203 AAGGGACATGCCAACACATC 58.451 50.000 8.20 0.00 38.95 3.06
1825 1935 2.100797 CATGCCAACACATCGCCG 59.899 61.111 0.00 0.00 0.00 6.46
2077 2211 9.679661 ACCATTTACATGTCAAATGTGTATAGA 57.320 29.630 23.86 0.00 40.30 1.98
2093 2227 8.846943 TGTGTATAGAAAAATGTCTCACATGT 57.153 30.769 0.00 0.00 37.97 3.21
2094 2228 9.936759 TGTGTATAGAAAAATGTCTCACATGTA 57.063 29.630 0.00 0.00 37.97 2.29
2096 2230 9.083080 TGTATAGAAAAATGTCTCACATGTACG 57.917 33.333 0.00 0.00 37.97 3.67
2097 2231 9.297586 GTATAGAAAAATGTCTCACATGTACGA 57.702 33.333 0.00 0.00 37.97 3.43
2098 2232 8.771920 ATAGAAAAATGTCTCACATGTACGAA 57.228 30.769 0.00 0.00 37.97 3.85
2099 2233 7.490962 AGAAAAATGTCTCACATGTACGAAA 57.509 32.000 0.00 0.00 37.97 3.46
2100 2234 7.576236 AGAAAAATGTCTCACATGTACGAAAG 58.424 34.615 0.00 0.00 37.97 2.62
2101 2235 7.441157 AGAAAAATGTCTCACATGTACGAAAGA 59.559 33.333 0.00 0.00 37.97 2.52
2102 2236 7.672983 AAAATGTCTCACATGTACGAAAGAT 57.327 32.000 0.00 0.00 37.97 2.40
2103 2237 8.771920 AAAATGTCTCACATGTACGAAAGATA 57.228 30.769 0.00 0.00 37.97 1.98
2104 2238 8.948631 AAATGTCTCACATGTACGAAAGATAT 57.051 30.769 0.00 0.00 37.97 1.63
2106 2240 9.464714 AATGTCTCACATGTACGAAAGATATAC 57.535 33.333 0.00 0.00 37.97 1.47
2107 2241 7.992008 TGTCTCACATGTACGAAAGATATACA 58.008 34.615 0.00 0.00 33.54 2.29
2108 2242 8.463607 TGTCTCACATGTACGAAAGATATACAA 58.536 33.333 0.00 0.00 32.80 2.41
2109 2243 9.464714 GTCTCACATGTACGAAAGATATACAAT 57.535 33.333 0.00 0.00 32.80 2.71
2110 2244 9.463443 TCTCACATGTACGAAAGATATACAATG 57.537 33.333 0.00 0.00 32.80 2.82
2111 2245 9.249457 CTCACATGTACGAAAGATATACAATGT 57.751 33.333 0.00 0.00 32.80 2.71
2112 2246 9.244799 TCACATGTACGAAAGATATACAATGTC 57.755 33.333 0.00 0.00 32.80 3.06
2113 2247 9.249457 CACATGTACGAAAGATATACAATGTCT 57.751 33.333 0.00 0.00 32.80 3.41
2211 2345 9.778741 AATGTCCATGATATATACGAAAAGTGT 57.221 29.630 0.00 0.00 0.00 3.55
2213 2347 9.687210 TGTCCATGATATATACGAAAAGTGTAC 57.313 33.333 0.00 0.00 0.00 2.90
2214 2348 9.687210 GTCCATGATATATACGAAAAGTGTACA 57.313 33.333 0.00 0.00 0.00 2.90
2334 2468 9.513906 TCTGATGTATTCCAAAAATGTAGAACA 57.486 29.630 0.00 0.00 0.00 3.18
2421 2555 9.796120 ATTACATATTCCAAAATGTTAACCGTG 57.204 29.630 2.48 0.00 37.50 4.94
2422 2556 7.222000 ACATATTCCAAAATGTTAACCGTGT 57.778 32.000 2.48 0.00 32.43 4.49
2423 2557 8.338072 ACATATTCCAAAATGTTAACCGTGTA 57.662 30.769 2.48 0.00 32.43 2.90
2424 2558 8.962679 ACATATTCCAAAATGTTAACCGTGTAT 58.037 29.630 2.48 0.00 32.43 2.29
2446 2580 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
2447 2581 3.277962 GGAACGTCTCCTCCCACTA 57.722 57.895 8.87 0.00 41.61 2.74
2448 2582 1.553706 GGAACGTCTCCTCCCACTAA 58.446 55.000 8.87 0.00 41.61 2.24
2449 2583 1.897802 GGAACGTCTCCTCCCACTAAA 59.102 52.381 8.87 0.00 41.61 1.85
2450 2584 2.301009 GGAACGTCTCCTCCCACTAAAA 59.699 50.000 8.87 0.00 41.61 1.52
2451 2585 3.324117 GAACGTCTCCTCCCACTAAAAC 58.676 50.000 0.00 0.00 0.00 2.43
2452 2586 1.622312 ACGTCTCCTCCCACTAAAACC 59.378 52.381 0.00 0.00 0.00 3.27
2453 2587 1.621814 CGTCTCCTCCCACTAAAACCA 59.378 52.381 0.00 0.00 0.00 3.67
2454 2588 2.612221 CGTCTCCTCCCACTAAAACCAC 60.612 54.545 0.00 0.00 0.00 4.16
2455 2589 2.370849 GTCTCCTCCCACTAAAACCACA 59.629 50.000 0.00 0.00 0.00 4.17
2456 2590 3.009143 GTCTCCTCCCACTAAAACCACAT 59.991 47.826 0.00 0.00 0.00 3.21
2457 2591 3.263425 TCTCCTCCCACTAAAACCACATC 59.737 47.826 0.00 0.00 0.00 3.06
2458 2592 2.027561 TCCTCCCACTAAAACCACATCG 60.028 50.000 0.00 0.00 0.00 3.84
2459 2593 2.290071 CCTCCCACTAAAACCACATCGT 60.290 50.000 0.00 0.00 0.00 3.73
2460 2594 3.000727 CTCCCACTAAAACCACATCGTC 58.999 50.000 0.00 0.00 0.00 4.20
2461 2595 2.369203 TCCCACTAAAACCACATCGTCA 59.631 45.455 0.00 0.00 0.00 4.35
2462 2596 3.142951 CCCACTAAAACCACATCGTCAA 58.857 45.455 0.00 0.00 0.00 3.18
2463 2597 3.566322 CCCACTAAAACCACATCGTCAAA 59.434 43.478 0.00 0.00 0.00 2.69
2464 2598 4.036971 CCCACTAAAACCACATCGTCAAAA 59.963 41.667 0.00 0.00 0.00 2.44
2465 2599 5.212194 CCACTAAAACCACATCGTCAAAAG 58.788 41.667 0.00 0.00 0.00 2.27
2466 2600 4.675114 CACTAAAACCACATCGTCAAAAGC 59.325 41.667 0.00 0.00 0.00 3.51
2467 2601 2.793278 AAACCACATCGTCAAAAGCC 57.207 45.000 0.00 0.00 0.00 4.35
2468 2602 1.686355 AACCACATCGTCAAAAGCCA 58.314 45.000 0.00 0.00 0.00 4.75
2469 2603 1.909700 ACCACATCGTCAAAAGCCAT 58.090 45.000 0.00 0.00 0.00 4.40
2470 2604 1.541147 ACCACATCGTCAAAAGCCATG 59.459 47.619 0.00 0.00 0.00 3.66
2471 2605 1.811965 CCACATCGTCAAAAGCCATGA 59.188 47.619 0.00 0.00 0.00 3.07
2472 2606 2.228582 CCACATCGTCAAAAGCCATGAA 59.771 45.455 0.00 0.00 0.00 2.57
2473 2607 3.305267 CCACATCGTCAAAAGCCATGAAA 60.305 43.478 0.00 0.00 0.00 2.69
2474 2608 4.487948 CACATCGTCAAAAGCCATGAAAT 58.512 39.130 0.00 0.00 0.00 2.17
2475 2609 5.392919 CCACATCGTCAAAAGCCATGAAATA 60.393 40.000 0.00 0.00 0.00 1.40
2476 2610 6.092092 CACATCGTCAAAAGCCATGAAATAA 58.908 36.000 0.00 0.00 0.00 1.40
2477 2611 6.585702 CACATCGTCAAAAGCCATGAAATAAA 59.414 34.615 0.00 0.00 0.00 1.40
2478 2612 7.276218 CACATCGTCAAAAGCCATGAAATAAAT 59.724 33.333 0.00 0.00 0.00 1.40
2479 2613 8.465999 ACATCGTCAAAAGCCATGAAATAAATA 58.534 29.630 0.00 0.00 0.00 1.40
2480 2614 8.745837 CATCGTCAAAAGCCATGAAATAAATAC 58.254 33.333 0.00 0.00 0.00 1.89
2481 2615 7.821652 TCGTCAAAAGCCATGAAATAAATACA 58.178 30.769 0.00 0.00 0.00 2.29
2482 2616 7.967854 TCGTCAAAAGCCATGAAATAAATACAG 59.032 33.333 0.00 0.00 0.00 2.74
2483 2617 7.967854 CGTCAAAAGCCATGAAATAAATACAGA 59.032 33.333 0.00 0.00 0.00 3.41
2484 2618 9.638239 GTCAAAAGCCATGAAATAAATACAGAA 57.362 29.630 0.00 0.00 0.00 3.02
2490 2624 9.590451 AGCCATGAAATAAATACAGAAAATGTG 57.410 29.630 0.00 0.00 43.80 3.21
2491 2625 9.585099 GCCATGAAATAAATACAGAAAATGTGA 57.415 29.630 0.00 0.00 43.80 3.58
2511 2645 1.661341 GCATCAGTGCCAAGTCTAGG 58.339 55.000 0.00 0.00 45.76 3.02
2518 2652 3.957288 GCCAAGTCTAGGCCTTGAA 57.043 52.632 18.89 0.00 46.50 2.69
2519 2653 1.454201 GCCAAGTCTAGGCCTTGAAC 58.546 55.000 18.89 12.56 46.50 3.18
2520 2654 1.003696 GCCAAGTCTAGGCCTTGAACT 59.996 52.381 18.89 14.47 46.50 3.01
2521 2655 2.937433 GCCAAGTCTAGGCCTTGAACTC 60.937 54.545 18.89 6.82 46.50 3.01
2522 2656 2.569404 CCAAGTCTAGGCCTTGAACTCT 59.431 50.000 18.89 9.10 41.44 3.24
2523 2657 3.594134 CAAGTCTAGGCCTTGAACTCTG 58.406 50.000 18.89 9.55 41.44 3.35
2524 2658 2.183679 AGTCTAGGCCTTGAACTCTGG 58.816 52.381 18.89 0.00 0.00 3.86
2525 2659 1.903183 GTCTAGGCCTTGAACTCTGGT 59.097 52.381 18.89 0.00 0.00 4.00
2526 2660 1.902508 TCTAGGCCTTGAACTCTGGTG 59.097 52.381 12.58 0.00 0.00 4.17
2527 2661 0.324943 TAGGCCTTGAACTCTGGTGC 59.675 55.000 12.58 0.00 0.00 5.01
2528 2662 2.328099 GGCCTTGAACTCTGGTGCG 61.328 63.158 0.00 0.00 0.00 5.34
2529 2663 2.970974 GCCTTGAACTCTGGTGCGC 61.971 63.158 0.00 0.00 0.00 6.09
2530 2664 1.302033 CCTTGAACTCTGGTGCGCT 60.302 57.895 9.73 0.00 0.00 5.92
2531 2665 1.572085 CCTTGAACTCTGGTGCGCTG 61.572 60.000 9.73 0.00 0.00 5.18
2532 2666 1.572085 CTTGAACTCTGGTGCGCTGG 61.572 60.000 9.73 0.00 0.00 4.85
2533 2667 2.743928 GAACTCTGGTGCGCTGGG 60.744 66.667 9.73 0.00 0.00 4.45
2534 2668 3.240134 GAACTCTGGTGCGCTGGGA 62.240 63.158 9.73 0.70 0.00 4.37
2535 2669 2.527951 GAACTCTGGTGCGCTGGGAT 62.528 60.000 9.73 0.00 0.00 3.85
2536 2670 1.264749 AACTCTGGTGCGCTGGGATA 61.265 55.000 9.73 0.00 0.00 2.59
2537 2671 1.227380 CTCTGGTGCGCTGGGATAC 60.227 63.158 9.73 0.00 0.00 2.24
2552 2686 3.180891 GGATACCACTGTCCTGCTAAC 57.819 52.381 0.00 0.00 0.00 2.34
2553 2687 2.158943 GGATACCACTGTCCTGCTAACC 60.159 54.545 0.00 0.00 0.00 2.85
2554 2688 0.892755 TACCACTGTCCTGCTAACCG 59.107 55.000 0.00 0.00 0.00 4.44
2555 2689 1.741770 CCACTGTCCTGCTAACCGC 60.742 63.158 0.00 0.00 39.77 5.68
2556 2690 1.741770 CACTGTCCTGCTAACCGCC 60.742 63.158 0.00 0.00 38.05 6.13
2557 2691 2.125106 CTGTCCTGCTAACCGCCC 60.125 66.667 0.00 0.00 38.05 6.13
2558 2692 2.925706 TGTCCTGCTAACCGCCCA 60.926 61.111 0.00 0.00 38.05 5.36
2559 2693 2.436115 GTCCTGCTAACCGCCCAC 60.436 66.667 0.00 0.00 38.05 4.61
2560 2694 3.712907 TCCTGCTAACCGCCCACC 61.713 66.667 0.00 0.00 38.05 4.61
2561 2695 3.717294 CCTGCTAACCGCCCACCT 61.717 66.667 0.00 0.00 38.05 4.00
2562 2696 2.436646 CTGCTAACCGCCCACCTG 60.437 66.667 0.00 0.00 38.05 4.00
2563 2697 4.715523 TGCTAACCGCCCACCTGC 62.716 66.667 0.00 0.00 38.05 4.85
2564 2698 4.715523 GCTAACCGCCCACCTGCA 62.716 66.667 0.00 0.00 0.00 4.41
2565 2699 2.436646 CTAACCGCCCACCTGCAG 60.437 66.667 6.78 6.78 0.00 4.41
2566 2700 3.976701 CTAACCGCCCACCTGCAGG 62.977 68.421 31.60 31.60 42.17 4.85
2576 2710 2.979676 CCTGCAGGTTGCTTCGCA 60.980 61.111 25.53 0.00 45.31 5.10
2577 2711 2.338015 CCTGCAGGTTGCTTCGCAT 61.338 57.895 25.53 0.00 45.31 4.73
2578 2712 1.026182 CCTGCAGGTTGCTTCGCATA 61.026 55.000 25.53 0.00 45.31 3.14
2579 2713 0.804364 CTGCAGGTTGCTTCGCATAA 59.196 50.000 5.57 0.00 45.31 1.90
2580 2714 1.199789 CTGCAGGTTGCTTCGCATAAA 59.800 47.619 5.57 0.00 45.31 1.40
2581 2715 1.611006 TGCAGGTTGCTTCGCATAAAA 59.389 42.857 2.48 0.00 45.31 1.52
2582 2716 2.035193 TGCAGGTTGCTTCGCATAAAAA 59.965 40.909 2.48 0.00 45.31 1.94
2583 2717 3.253230 GCAGGTTGCTTCGCATAAAAAT 58.747 40.909 0.00 0.00 40.96 1.82
2584 2718 4.082517 TGCAGGTTGCTTCGCATAAAAATA 60.083 37.500 2.48 0.00 45.31 1.40
2585 2719 5.043248 GCAGGTTGCTTCGCATAAAAATAT 58.957 37.500 0.00 0.00 40.96 1.28
2586 2720 5.519927 GCAGGTTGCTTCGCATAAAAATATT 59.480 36.000 0.00 0.00 40.96 1.28
2587 2721 6.291796 GCAGGTTGCTTCGCATAAAAATATTC 60.292 38.462 0.00 0.00 40.96 1.75
2588 2722 6.198966 CAGGTTGCTTCGCATAAAAATATTCC 59.801 38.462 0.00 0.00 38.76 3.01
2589 2723 6.096846 AGGTTGCTTCGCATAAAAATATTCCT 59.903 34.615 0.00 0.00 38.76 3.36
2590 2724 6.198966 GGTTGCTTCGCATAAAAATATTCCTG 59.801 38.462 0.00 0.00 38.76 3.86
2591 2725 6.691754 TGCTTCGCATAAAAATATTCCTGA 57.308 33.333 0.00 0.00 31.71 3.86
2592 2726 7.275888 TGCTTCGCATAAAAATATTCCTGAT 57.724 32.000 0.00 0.00 31.71 2.90
2593 2727 8.389779 TGCTTCGCATAAAAATATTCCTGATA 57.610 30.769 0.00 0.00 31.71 2.15
2594 2728 9.013229 TGCTTCGCATAAAAATATTCCTGATAT 57.987 29.630 0.00 0.00 31.71 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.034767 TGATGAAGAAGCCAGGCCTG 60.035 55.000 26.87 26.87 0.00 4.85
11 12 0.034670 GTGATGAAGAAGCCAGGCCT 60.035 55.000 8.22 0.00 0.00 5.19
12 13 1.034292 GGTGATGAAGAAGCCAGGCC 61.034 60.000 8.22 0.00 0.00 5.19
13 14 0.034670 AGGTGATGAAGAAGCCAGGC 60.035 55.000 1.84 1.84 0.00 4.85
14 15 1.747709 CAGGTGATGAAGAAGCCAGG 58.252 55.000 0.00 0.00 0.00 4.45
15 16 1.093159 GCAGGTGATGAAGAAGCCAG 58.907 55.000 0.00 0.00 0.00 4.85
16 17 0.401356 TGCAGGTGATGAAGAAGCCA 59.599 50.000 0.00 0.00 0.00 4.75
17 18 0.807496 GTGCAGGTGATGAAGAAGCC 59.193 55.000 0.00 0.00 0.00 4.35
18 19 0.807496 GGTGCAGGTGATGAAGAAGC 59.193 55.000 0.00 0.00 0.00 3.86
19 20 2.189594 TGGTGCAGGTGATGAAGAAG 57.810 50.000 0.00 0.00 0.00 2.85
20 21 2.229792 GTTGGTGCAGGTGATGAAGAA 58.770 47.619 0.00 0.00 0.00 2.52
21 22 1.142667 TGTTGGTGCAGGTGATGAAGA 59.857 47.619 0.00 0.00 0.00 2.87
22 23 1.267806 GTGTTGGTGCAGGTGATGAAG 59.732 52.381 0.00 0.00 0.00 3.02
23 24 1.317613 GTGTTGGTGCAGGTGATGAA 58.682 50.000 0.00 0.00 0.00 2.57
24 25 0.182299 TGTGTTGGTGCAGGTGATGA 59.818 50.000 0.00 0.00 0.00 2.92
25 26 0.311790 GTGTGTTGGTGCAGGTGATG 59.688 55.000 0.00 0.00 0.00 3.07
26 27 0.106769 TGTGTGTTGGTGCAGGTGAT 60.107 50.000 0.00 0.00 0.00 3.06
27 28 0.106769 ATGTGTGTTGGTGCAGGTGA 60.107 50.000 0.00 0.00 0.00 4.02
28 29 0.746063 AATGTGTGTTGGTGCAGGTG 59.254 50.000 0.00 0.00 0.00 4.00
29 30 1.408702 GAAATGTGTGTTGGTGCAGGT 59.591 47.619 0.00 0.00 0.00 4.00
30 31 1.408340 TGAAATGTGTGTTGGTGCAGG 59.592 47.619 0.00 0.00 0.00 4.85
31 32 2.099592 ACTGAAATGTGTGTTGGTGCAG 59.900 45.455 0.00 0.00 0.00 4.41
32 33 2.098614 ACTGAAATGTGTGTTGGTGCA 58.901 42.857 0.00 0.00 0.00 4.57
33 34 2.869233 ACTGAAATGTGTGTTGGTGC 57.131 45.000 0.00 0.00 0.00 5.01
34 35 3.362295 CGAACTGAAATGTGTGTTGGTG 58.638 45.455 0.00 0.00 0.00 4.17
35 36 2.357637 CCGAACTGAAATGTGTGTTGGT 59.642 45.455 0.00 0.00 0.00 3.67
36 37 2.357637 ACCGAACTGAAATGTGTGTTGG 59.642 45.455 0.00 0.00 0.00 3.77
37 38 3.362295 CACCGAACTGAAATGTGTGTTG 58.638 45.455 0.00 0.00 0.00 3.33
38 39 2.357637 CCACCGAACTGAAATGTGTGTT 59.642 45.455 0.00 0.00 0.00 3.32
39 40 1.946768 CCACCGAACTGAAATGTGTGT 59.053 47.619 0.00 0.00 0.00 3.72
40 41 1.266718 CCCACCGAACTGAAATGTGTG 59.733 52.381 0.00 0.00 0.00 3.82
41 42 1.604604 CCCACCGAACTGAAATGTGT 58.395 50.000 0.00 0.00 0.00 3.72
42 43 0.240945 GCCCACCGAACTGAAATGTG 59.759 55.000 0.00 0.00 0.00 3.21
43 44 0.110486 AGCCCACCGAACTGAAATGT 59.890 50.000 0.00 0.00 0.00 2.71
44 45 0.523072 CAGCCCACCGAACTGAAATG 59.477 55.000 0.00 0.00 33.10 2.32
45 46 0.609131 CCAGCCCACCGAACTGAAAT 60.609 55.000 0.00 0.00 33.10 2.17
46 47 1.228124 CCAGCCCACCGAACTGAAA 60.228 57.895 0.00 0.00 33.10 2.69
47 48 2.429930 CCAGCCCACCGAACTGAA 59.570 61.111 0.00 0.00 33.10 3.02
48 49 3.636231 CCCAGCCCACCGAACTGA 61.636 66.667 0.00 0.00 33.10 3.41
49 50 3.636231 TCCCAGCCCACCGAACTG 61.636 66.667 0.00 0.00 0.00 3.16
50 51 3.637273 GTCCCAGCCCACCGAACT 61.637 66.667 0.00 0.00 0.00 3.01
51 52 4.717313 GGTCCCAGCCCACCGAAC 62.717 72.222 0.00 0.00 0.00 3.95
65 66 0.591659 GCAAACTTCAAGGACCGGTC 59.408 55.000 27.04 27.04 0.00 4.79
66 67 0.822121 GGCAAACTTCAAGGACCGGT 60.822 55.000 6.92 6.92 0.00 5.28
67 68 1.852067 CGGCAAACTTCAAGGACCGG 61.852 60.000 0.00 0.00 35.63 5.28
68 69 1.164041 ACGGCAAACTTCAAGGACCG 61.164 55.000 7.80 7.80 44.49 4.79
69 70 1.029681 AACGGCAAACTTCAAGGACC 58.970 50.000 0.00 0.00 0.00 4.46
70 71 1.269051 CCAACGGCAAACTTCAAGGAC 60.269 52.381 0.00 0.00 0.00 3.85
71 72 1.028905 CCAACGGCAAACTTCAAGGA 58.971 50.000 0.00 0.00 0.00 3.36
72 73 3.568093 CCAACGGCAAACTTCAAGG 57.432 52.632 0.00 0.00 0.00 3.61
84 85 1.515487 GCCTAAATTGGGCCAACGG 59.485 57.895 23.59 19.39 43.49 4.44
91 92 2.095263 CACAACGACTGCCTAAATTGGG 60.095 50.000 0.00 0.00 0.00 4.12
92 93 2.552315 ACACAACGACTGCCTAAATTGG 59.448 45.455 0.00 0.00 0.00 3.16
93 94 3.364964 GGACACAACGACTGCCTAAATTG 60.365 47.826 0.00 0.00 0.00 2.32
94 95 2.812011 GGACACAACGACTGCCTAAATT 59.188 45.455 0.00 0.00 0.00 1.82
95 96 2.224426 TGGACACAACGACTGCCTAAAT 60.224 45.455 0.00 0.00 0.00 1.40
96 97 1.139256 TGGACACAACGACTGCCTAAA 59.861 47.619 0.00 0.00 0.00 1.85
97 98 0.753867 TGGACACAACGACTGCCTAA 59.246 50.000 0.00 0.00 0.00 2.69
98 99 0.317160 CTGGACACAACGACTGCCTA 59.683 55.000 0.00 0.00 0.00 3.93
99 100 1.069765 CTGGACACAACGACTGCCT 59.930 57.895 0.00 0.00 0.00 4.75
100 101 1.961277 CCTGGACACAACGACTGCC 60.961 63.158 0.00 0.00 0.00 4.85
101 102 0.946221 CTCCTGGACACAACGACTGC 60.946 60.000 0.00 0.00 0.00 4.40
102 103 0.319900 CCTCCTGGACACAACGACTG 60.320 60.000 0.00 0.00 34.57 3.51
103 104 2.050269 CCTCCTGGACACAACGACT 58.950 57.895 0.00 0.00 34.57 4.18
104 105 1.668151 GCCTCCTGGACACAACGAC 60.668 63.158 0.00 0.00 34.57 4.34
105 106 2.099652 CTGCCTCCTGGACACAACGA 62.100 60.000 0.00 0.00 34.57 3.85
106 107 1.669115 CTGCCTCCTGGACACAACG 60.669 63.158 0.00 0.00 34.57 4.10
107 108 0.108585 TTCTGCCTCCTGGACACAAC 59.891 55.000 0.00 0.00 34.57 3.32
108 109 0.397941 CTTCTGCCTCCTGGACACAA 59.602 55.000 0.00 0.00 34.57 3.33
109 110 2.061220 CTTCTGCCTCCTGGACACA 58.939 57.895 0.00 0.00 34.57 3.72
110 111 1.376553 GCTTCTGCCTCCTGGACAC 60.377 63.158 0.00 0.00 34.57 3.67
111 112 3.072476 GCTTCTGCCTCCTGGACA 58.928 61.111 0.00 0.00 34.57 4.02
133 134 3.798511 GGGGAGGGCAGGTGTAGC 61.799 72.222 0.00 0.00 0.00 3.58
134 135 2.041265 AGGGGAGGGCAGGTGTAG 59.959 66.667 0.00 0.00 0.00 2.74
135 136 2.040606 GAGGGGAGGGCAGGTGTA 59.959 66.667 0.00 0.00 0.00 2.90
136 137 2.194951 TATGAGGGGAGGGCAGGTGT 62.195 60.000 0.00 0.00 0.00 4.16
137 138 0.988145 TTATGAGGGGAGGGCAGGTG 60.988 60.000 0.00 0.00 0.00 4.00
138 139 0.253630 TTTATGAGGGGAGGGCAGGT 60.254 55.000 0.00 0.00 0.00 4.00
139 140 0.926293 TTTTATGAGGGGAGGGCAGG 59.074 55.000 0.00 0.00 0.00 4.85
140 141 2.826674 TTTTTATGAGGGGAGGGCAG 57.173 50.000 0.00 0.00 0.00 4.85
158 159 4.994744 GGCAGCAATCGCCTTTTT 57.005 50.000 0.00 0.00 46.56 1.94
164 165 0.319813 AGTTTTTGGGCAGCAATCGC 60.320 50.000 0.00 0.00 38.99 4.58
165 166 2.595386 GTAGTTTTTGGGCAGCAATCG 58.405 47.619 0.00 0.00 0.00 3.34
166 167 2.298729 TGGTAGTTTTTGGGCAGCAATC 59.701 45.455 0.00 0.00 0.00 2.67
167 168 2.037121 GTGGTAGTTTTTGGGCAGCAAT 59.963 45.455 0.00 0.00 0.00 3.56
168 169 1.410882 GTGGTAGTTTTTGGGCAGCAA 59.589 47.619 0.00 0.00 0.00 3.91
169 170 1.036707 GTGGTAGTTTTTGGGCAGCA 58.963 50.000 0.00 0.00 0.00 4.41
170 171 1.328279 AGTGGTAGTTTTTGGGCAGC 58.672 50.000 0.00 0.00 0.00 5.25
171 172 4.119136 CAAAAGTGGTAGTTTTTGGGCAG 58.881 43.478 2.61 0.00 39.44 4.85
172 173 3.515901 ACAAAAGTGGTAGTTTTTGGGCA 59.484 39.130 12.56 0.00 44.51 5.36
173 174 4.131649 ACAAAAGTGGTAGTTTTTGGGC 57.868 40.909 12.56 0.00 44.51 5.36
174 175 6.621812 GCAAAACAAAAGTGGTAGTTTTTGGG 60.622 38.462 12.56 3.15 44.51 4.12
175 176 6.310960 GCAAAACAAAAGTGGTAGTTTTTGG 58.689 36.000 12.56 0.00 44.51 3.28
176 177 6.012482 CGCAAAACAAAAGTGGTAGTTTTTG 58.988 36.000 7.83 7.83 45.28 2.44
177 178 5.120986 CCGCAAAACAAAAGTGGTAGTTTTT 59.879 36.000 0.00 0.00 40.89 1.94
178 179 4.627900 CCGCAAAACAAAAGTGGTAGTTTT 59.372 37.500 0.00 0.00 42.86 2.43
179 180 4.177783 CCGCAAAACAAAAGTGGTAGTTT 58.822 39.130 0.00 0.00 35.87 2.66
180 181 3.429684 CCCGCAAAACAAAAGTGGTAGTT 60.430 43.478 0.00 0.00 0.00 2.24
181 182 2.100087 CCCGCAAAACAAAAGTGGTAGT 59.900 45.455 0.00 0.00 0.00 2.73
182 183 2.544903 CCCCGCAAAACAAAAGTGGTAG 60.545 50.000 0.00 0.00 0.00 3.18
183 184 1.409427 CCCCGCAAAACAAAAGTGGTA 59.591 47.619 0.00 0.00 0.00 3.25
184 185 0.176910 CCCCGCAAAACAAAAGTGGT 59.823 50.000 0.00 0.00 0.00 4.16
185 186 0.461961 TCCCCGCAAAACAAAAGTGG 59.538 50.000 0.00 0.00 0.00 4.00
186 187 1.566404 GTCCCCGCAAAACAAAAGTG 58.434 50.000 0.00 0.00 0.00 3.16
187 188 0.462375 GGTCCCCGCAAAACAAAAGT 59.538 50.000 0.00 0.00 0.00 2.66
188 189 0.461961 TGGTCCCCGCAAAACAAAAG 59.538 50.000 0.00 0.00 0.00 2.27
189 190 0.902531 TTGGTCCCCGCAAAACAAAA 59.097 45.000 0.00 0.00 0.00 2.44
190 191 0.902531 TTTGGTCCCCGCAAAACAAA 59.097 45.000 0.00 0.00 0.00 2.83
191 192 0.902531 TTTTGGTCCCCGCAAAACAA 59.097 45.000 0.00 0.00 0.00 2.83
192 193 0.902531 TTTTTGGTCCCCGCAAAACA 59.097 45.000 0.00 0.00 0.00 2.83
193 194 2.248280 ATTTTTGGTCCCCGCAAAAC 57.752 45.000 0.00 0.00 0.00 2.43
194 195 3.494573 GGTAATTTTTGGTCCCCGCAAAA 60.495 43.478 0.00 0.00 0.00 2.44
195 196 2.037381 GGTAATTTTTGGTCCCCGCAAA 59.963 45.455 0.00 0.00 0.00 3.68
196 197 1.619332 GGTAATTTTTGGTCCCCGCAA 59.381 47.619 0.00 0.00 0.00 4.85
197 198 1.258676 GGTAATTTTTGGTCCCCGCA 58.741 50.000 0.00 0.00 0.00 5.69
198 199 1.067425 GTGGTAATTTTTGGTCCCCGC 60.067 52.381 0.00 0.00 0.00 6.13
199 200 2.521126 AGTGGTAATTTTTGGTCCCCG 58.479 47.619 0.00 0.00 0.00 5.73
200 201 4.504165 CCAAAGTGGTAATTTTTGGTCCCC 60.504 45.833 9.52 0.00 43.61 4.81
201 202 4.504165 CCCAAAGTGGTAATTTTTGGTCCC 60.504 45.833 14.53 0.00 45.92 4.46
202 203 4.101898 ACCCAAAGTGGTAATTTTTGGTCC 59.898 41.667 14.53 0.00 45.92 4.46
203 204 5.284861 ACCCAAAGTGGTAATTTTTGGTC 57.715 39.130 14.53 0.00 45.92 4.02
204 205 5.900699 AGTACCCAAAGTGGTAATTTTTGGT 59.099 36.000 14.53 5.43 45.92 3.67
205 206 6.413783 AGTACCCAAAGTGGTAATTTTTGG 57.586 37.500 10.44 10.44 46.57 3.28
206 207 8.398878 TCTAGTACCCAAAGTGGTAATTTTTG 57.601 34.615 0.00 0.00 42.38 2.44
207 208 8.999905 TTCTAGTACCCAAAGTGGTAATTTTT 57.000 30.769 0.00 0.00 42.38 1.94
208 209 8.999905 TTTCTAGTACCCAAAGTGGTAATTTT 57.000 30.769 0.00 0.00 42.38 1.82
209 210 8.853126 GTTTTCTAGTACCCAAAGTGGTAATTT 58.147 33.333 0.00 0.00 42.38 1.82
210 211 8.000127 TGTTTTCTAGTACCCAAAGTGGTAATT 59.000 33.333 0.00 0.00 42.38 1.40
211 212 7.519927 TGTTTTCTAGTACCCAAAGTGGTAAT 58.480 34.615 0.00 0.00 42.38 1.89
212 213 6.897986 TGTTTTCTAGTACCCAAAGTGGTAA 58.102 36.000 0.00 0.00 42.38 2.85
213 214 6.497624 TGTTTTCTAGTACCCAAAGTGGTA 57.502 37.500 0.00 0.00 39.91 3.25
214 215 5.376756 TGTTTTCTAGTACCCAAAGTGGT 57.623 39.130 0.00 0.00 42.62 4.16
215 216 6.488683 TGAATGTTTTCTAGTACCCAAAGTGG 59.511 38.462 0.00 0.00 33.24 4.00
216 217 7.504924 TGAATGTTTTCTAGTACCCAAAGTG 57.495 36.000 0.00 0.00 32.78 3.16
217 218 7.309194 GCATGAATGTTTTCTAGTACCCAAAGT 60.309 37.037 0.00 0.00 32.78 2.66
218 219 7.029563 GCATGAATGTTTTCTAGTACCCAAAG 58.970 38.462 0.00 0.00 32.78 2.77
219 220 6.719370 AGCATGAATGTTTTCTAGTACCCAAA 59.281 34.615 0.00 0.00 32.78 3.28
220 221 6.150976 CAGCATGAATGTTTTCTAGTACCCAA 59.849 38.462 0.00 0.00 39.69 4.12
221 222 5.647658 CAGCATGAATGTTTTCTAGTACCCA 59.352 40.000 0.00 0.00 39.69 4.51
222 223 5.880332 TCAGCATGAATGTTTTCTAGTACCC 59.120 40.000 0.00 0.00 45.97 3.69
223 224 6.985188 TCAGCATGAATGTTTTCTAGTACC 57.015 37.500 0.00 0.00 45.97 3.34
240 241 7.686438 TTGAATAACTACAACATGTCAGCAT 57.314 32.000 0.00 0.00 35.32 3.79
241 242 7.503521 TTTGAATAACTACAACATGTCAGCA 57.496 32.000 0.00 0.00 0.00 4.41
242 243 8.795786 TTTTTGAATAACTACAACATGTCAGC 57.204 30.769 0.00 0.00 0.00 4.26
269 270 9.404848 CCAAATGGCTATATCATGTCAGATTAT 57.595 33.333 0.00 0.00 0.00 1.28
270 271 8.385491 ACCAAATGGCTATATCATGTCAGATTA 58.615 33.333 0.00 0.00 39.32 1.75
271 272 7.236529 ACCAAATGGCTATATCATGTCAGATT 58.763 34.615 0.00 0.00 39.32 2.40
272 273 6.787170 ACCAAATGGCTATATCATGTCAGAT 58.213 36.000 0.00 0.00 39.32 2.90
273 274 6.191657 ACCAAATGGCTATATCATGTCAGA 57.808 37.500 0.00 0.00 39.32 3.27
274 275 6.889301 AACCAAATGGCTATATCATGTCAG 57.111 37.500 0.00 0.00 39.32 3.51
275 276 7.658525 AAAACCAAATGGCTATATCATGTCA 57.341 32.000 0.00 0.00 39.32 3.58
299 300 9.421806 CAAATGGCTACATCATTGTCTTAAAAA 57.578 29.630 0.00 0.00 35.94 1.94
300 301 8.034215 CCAAATGGCTACATCATTGTCTTAAAA 58.966 33.333 0.00 0.00 35.94 1.52
301 302 7.178274 ACCAAATGGCTACATCATTGTCTTAAA 59.822 33.333 0.00 0.00 35.94 1.52
302 303 6.663093 ACCAAATGGCTACATCATTGTCTTAA 59.337 34.615 0.00 0.00 35.94 1.85
303 304 6.095300 CACCAAATGGCTACATCATTGTCTTA 59.905 38.462 0.00 0.00 35.94 2.10
304 305 5.018809 ACCAAATGGCTACATCATTGTCTT 58.981 37.500 0.00 0.00 35.94 3.01
305 306 4.400251 CACCAAATGGCTACATCATTGTCT 59.600 41.667 0.00 0.00 35.94 3.41
306 307 4.398988 TCACCAAATGGCTACATCATTGTC 59.601 41.667 0.00 0.00 35.94 3.18
307 308 4.343231 TCACCAAATGGCTACATCATTGT 58.657 39.130 0.00 0.00 35.94 2.71
308 309 4.987408 TCACCAAATGGCTACATCATTG 57.013 40.909 0.00 0.00 35.94 2.82
309 310 5.999205 TTTCACCAAATGGCTACATCATT 57.001 34.783 0.00 0.00 35.94 2.57
310 311 6.549433 AATTTCACCAAATGGCTACATCAT 57.451 33.333 0.00 0.00 35.94 2.45
311 312 5.999205 AATTTCACCAAATGGCTACATCA 57.001 34.783 0.00 0.00 35.94 3.07
312 313 7.010460 GCTAAAATTTCACCAAATGGCTACATC 59.990 37.037 0.00 0.00 35.94 3.06
313 314 6.818142 GCTAAAATTTCACCAAATGGCTACAT 59.182 34.615 0.00 0.00 39.54 2.29
314 315 6.162777 GCTAAAATTTCACCAAATGGCTACA 58.837 36.000 0.00 0.00 39.32 2.74
315 316 6.162777 TGCTAAAATTTCACCAAATGGCTAC 58.837 36.000 0.00 0.00 39.32 3.58
316 317 6.352016 TGCTAAAATTTCACCAAATGGCTA 57.648 33.333 0.00 0.00 39.32 3.93
317 318 5.226194 TGCTAAAATTTCACCAAATGGCT 57.774 34.783 0.00 0.00 39.32 4.75
318 319 5.938438 TTGCTAAAATTTCACCAAATGGC 57.062 34.783 0.00 0.00 39.32 4.40
327 328 9.123709 GTCGTGTGATATTTTGCTAAAATTTCA 57.876 29.630 15.97 15.97 42.49 2.69
328 329 8.583765 GGTCGTGTGATATTTTGCTAAAATTTC 58.416 33.333 10.66 11.95 41.16 2.17
329 330 7.544217 GGGTCGTGTGATATTTTGCTAAAATTT 59.456 33.333 10.66 5.16 41.16 1.82
330 331 7.033185 GGGTCGTGTGATATTTTGCTAAAATT 58.967 34.615 10.66 0.00 41.16 1.82
331 332 6.151985 TGGGTCGTGTGATATTTTGCTAAAAT 59.848 34.615 0.00 4.99 43.19 1.82
332 333 5.473846 TGGGTCGTGTGATATTTTGCTAAAA 59.526 36.000 0.00 0.00 34.41 1.52
333 334 5.004448 TGGGTCGTGTGATATTTTGCTAAA 58.996 37.500 0.00 0.00 0.00 1.85
334 335 4.580868 TGGGTCGTGTGATATTTTGCTAA 58.419 39.130 0.00 0.00 0.00 3.09
335 336 4.081365 TCTGGGTCGTGTGATATTTTGCTA 60.081 41.667 0.00 0.00 0.00 3.49
336 337 3.009723 CTGGGTCGTGTGATATTTTGCT 58.990 45.455 0.00 0.00 0.00 3.91
337 338 3.006940 TCTGGGTCGTGTGATATTTTGC 58.993 45.455 0.00 0.00 0.00 3.68
338 339 6.483307 ACATATCTGGGTCGTGTGATATTTTG 59.517 38.462 0.00 0.00 31.94 2.44
339 340 6.483307 CACATATCTGGGTCGTGTGATATTTT 59.517 38.462 0.00 0.00 41.93 1.82
340 341 5.991606 CACATATCTGGGTCGTGTGATATTT 59.008 40.000 0.00 0.00 41.93 1.40
341 342 5.070446 ACACATATCTGGGTCGTGTGATATT 59.930 40.000 10.38 0.00 41.93 1.28
342 343 4.588951 ACACATATCTGGGTCGTGTGATAT 59.411 41.667 10.38 0.00 41.93 1.63
343 344 3.958147 ACACATATCTGGGTCGTGTGATA 59.042 43.478 10.38 0.00 41.93 2.15
344 345 2.766263 ACACATATCTGGGTCGTGTGAT 59.234 45.455 10.38 0.00 41.93 3.06
345 346 2.176045 ACACATATCTGGGTCGTGTGA 58.824 47.619 10.38 0.00 41.93 3.58
346 347 2.672961 ACACATATCTGGGTCGTGTG 57.327 50.000 0.00 0.00 44.19 3.82
347 348 2.093658 GGAACACATATCTGGGTCGTGT 60.094 50.000 0.00 0.00 38.34 4.49
348 349 2.093711 TGGAACACATATCTGGGTCGTG 60.094 50.000 0.00 0.00 38.34 4.35
349 350 2.184533 TGGAACACATATCTGGGTCGT 58.815 47.619 0.00 0.00 38.34 4.34
350 351 2.979814 TGGAACACATATCTGGGTCG 57.020 50.000 0.00 0.00 38.34 4.79
351 352 5.041191 AGATTGGAACACATATCTGGGTC 57.959 43.478 0.00 0.00 38.34 4.46
352 353 5.456921 AAGATTGGAACACATATCTGGGT 57.543 39.130 0.00 0.00 42.18 4.51
353 354 6.000219 CCTAAGATTGGAACACATATCTGGG 59.000 44.000 0.00 0.00 39.29 4.45
354 355 5.471456 GCCTAAGATTGGAACACATATCTGG 59.529 44.000 0.00 0.00 39.29 3.86
355 356 5.471456 GGCCTAAGATTGGAACACATATCTG 59.529 44.000 0.00 0.00 39.29 2.90
356 357 5.370880 AGGCCTAAGATTGGAACACATATCT 59.629 40.000 1.29 0.00 39.29 1.98
357 358 5.471456 CAGGCCTAAGATTGGAACACATATC 59.529 44.000 3.98 0.00 39.29 1.63
358 359 5.380043 CAGGCCTAAGATTGGAACACATAT 58.620 41.667 3.98 0.00 39.29 1.78
359 360 4.385199 CCAGGCCTAAGATTGGAACACATA 60.385 45.833 3.98 0.00 39.29 2.29
360 361 3.624777 CAGGCCTAAGATTGGAACACAT 58.375 45.455 3.98 0.00 39.29 3.21
361 362 2.290896 CCAGGCCTAAGATTGGAACACA 60.291 50.000 3.98 0.00 39.29 3.72
362 363 2.290960 ACCAGGCCTAAGATTGGAACAC 60.291 50.000 3.98 0.00 39.29 3.32
363 364 1.992557 ACCAGGCCTAAGATTGGAACA 59.007 47.619 3.98 0.00 34.76 3.18
364 365 2.369394 CACCAGGCCTAAGATTGGAAC 58.631 52.381 3.98 0.00 34.76 3.62
365 366 1.284785 CCACCAGGCCTAAGATTGGAA 59.715 52.381 3.98 0.00 34.76 3.53
366 367 0.918983 CCACCAGGCCTAAGATTGGA 59.081 55.000 3.98 0.00 34.76 3.53
367 368 0.106519 CCCACCAGGCCTAAGATTGG 60.107 60.000 3.98 4.57 36.76 3.16
368 369 3.502164 CCCACCAGGCCTAAGATTG 57.498 57.895 3.98 0.00 0.00 2.67
391 392 0.248990 AAATGTGTGTTGCGCAGGTG 60.249 50.000 11.31 0.00 41.34 4.00
398 399 3.189285 AGCAAACTGAAATGTGTGTTGC 58.811 40.909 0.00 0.00 0.00 4.17
453 456 1.747355 CTGCAACTGCCTAAGATTGGG 59.253 52.381 0.00 0.00 41.18 4.12
457 460 2.616510 GGACACTGCAACTGCCTAAGAT 60.617 50.000 0.00 0.00 41.18 2.40
458 461 1.270839 GGACACTGCAACTGCCTAAGA 60.271 52.381 0.00 0.00 41.18 2.10
459 462 1.160137 GGACACTGCAACTGCCTAAG 58.840 55.000 0.00 0.00 41.18 2.18
460 463 0.472044 TGGACACTGCAACTGCCTAA 59.528 50.000 0.00 0.00 41.18 2.69
461 464 0.035317 CTGGACACTGCAACTGCCTA 59.965 55.000 0.00 0.00 41.18 3.93
462 465 1.228063 CTGGACACTGCAACTGCCT 60.228 57.895 0.00 0.00 41.18 4.75
465 468 0.394192 TCTCCTGGACACTGCAACTG 59.606 55.000 0.00 0.00 0.00 3.16
468 471 0.836606 TGTTCTCCTGGACACTGCAA 59.163 50.000 0.00 0.00 0.00 4.08
469 472 0.106708 GTGTTCTCCTGGACACTGCA 59.893 55.000 9.27 0.00 0.00 4.41
470 473 0.394565 AGTGTTCTCCTGGACACTGC 59.605 55.000 16.30 4.39 41.29 4.40
471 474 2.028930 GGTAGTGTTCTCCTGGACACTG 60.029 54.545 22.87 2.61 42.56 3.66
472 475 2.249139 GGTAGTGTTCTCCTGGACACT 58.751 52.381 19.64 19.64 44.45 3.55
473 476 1.968493 TGGTAGTGTTCTCCTGGACAC 59.032 52.381 8.65 8.65 0.00 3.67
474 477 1.968493 GTGGTAGTGTTCTCCTGGACA 59.032 52.381 0.00 0.00 0.00 4.02
475 478 2.249139 AGTGGTAGTGTTCTCCTGGAC 58.751 52.381 0.00 0.00 0.00 4.02
476 479 2.696526 AGTGGTAGTGTTCTCCTGGA 57.303 50.000 0.00 0.00 0.00 3.86
552 555 2.764010 AGTTCCAAAAGTGGTGGTTTCC 59.236 45.455 0.00 0.00 46.11 3.13
553 556 4.180817 CAAGTTCCAAAAGTGGTGGTTTC 58.819 43.478 0.00 0.00 46.11 2.78
616 619 6.436261 CAAATGGCTACATCATGTCAGATTC 58.564 40.000 0.00 0.00 35.94 2.52
676 681 7.823745 AATTGGATGGATGTATAGGAACAAC 57.176 36.000 0.00 0.00 32.02 3.32
694 703 1.073125 TGACAGGCGAGGAAAATTGGA 59.927 47.619 0.00 0.00 0.00 3.53
695 704 1.200020 GTGACAGGCGAGGAAAATTGG 59.800 52.381 0.00 0.00 0.00 3.16
696 705 2.154462 AGTGACAGGCGAGGAAAATTG 58.846 47.619 0.00 0.00 0.00 2.32
697 706 2.568623 AGTGACAGGCGAGGAAAATT 57.431 45.000 0.00 0.00 0.00 1.82
724 733 3.486542 GCGCTTTTTCTCTCATGATGGAC 60.487 47.826 0.00 0.00 0.00 4.02
839 850 4.142315 CCTCAATTAGTTGGTGCCATTGAG 60.142 45.833 17.86 17.86 41.62 3.02
840 851 3.763360 CCTCAATTAGTTGGTGCCATTGA 59.237 43.478 0.00 4.70 35.99 2.57
881 892 1.635487 GGGGATATGGCTGGCTTATCA 59.365 52.381 27.02 0.75 0.00 2.15
1171 1202 5.052693 TGGCCATGAAGCTTATGAGTTAT 57.947 39.130 0.00 0.00 0.00 1.89
1172 1203 4.502105 TGGCCATGAAGCTTATGAGTTA 57.498 40.909 0.00 0.00 0.00 2.24
1173 1204 3.370840 TGGCCATGAAGCTTATGAGTT 57.629 42.857 0.00 0.00 0.00 3.01
1174 1205 3.589951 ATGGCCATGAAGCTTATGAGT 57.410 42.857 20.04 0.00 0.00 3.41
1240 1300 7.169645 GCAGAGAACAAATATAGAGAGCAGAAG 59.830 40.741 0.00 0.00 0.00 2.85
1241 1301 6.983307 GCAGAGAACAAATATAGAGAGCAGAA 59.017 38.462 0.00 0.00 0.00 3.02
1242 1302 6.097412 TGCAGAGAACAAATATAGAGAGCAGA 59.903 38.462 0.00 0.00 0.00 4.26
1268 1328 1.501582 GGGGCTCTCCATGAACTACT 58.498 55.000 0.00 0.00 37.22 2.57
1269 1329 0.105039 CGGGGCTCTCCATGAACTAC 59.895 60.000 0.00 0.00 37.22 2.73
1270 1330 0.325296 ACGGGGCTCTCCATGAACTA 60.325 55.000 0.00 0.00 37.22 2.24
1271 1331 0.325296 TACGGGGCTCTCCATGAACT 60.325 55.000 0.00 0.00 37.22 3.01
1316 1376 2.089349 GTCGTCTGTCTTCTGCCGC 61.089 63.158 0.00 0.00 0.00 6.53
1318 1378 1.444553 CCGTCGTCTGTCTTCTGCC 60.445 63.158 0.00 0.00 0.00 4.85
1330 1390 0.609681 AGCTCCTTCTTCTCCGTCGT 60.610 55.000 0.00 0.00 0.00 4.34
1331 1391 0.179150 CAGCTCCTTCTTCTCCGTCG 60.179 60.000 0.00 0.00 0.00 5.12
1332 1392 1.178276 TCAGCTCCTTCTTCTCCGTC 58.822 55.000 0.00 0.00 0.00 4.79
1333 1393 1.273886 GTTCAGCTCCTTCTTCTCCGT 59.726 52.381 0.00 0.00 0.00 4.69
1372 1432 1.369689 GTTGCTGCTGCTGTCGTTG 60.370 57.895 17.00 0.00 40.48 4.10
1373 1433 1.524621 AGTTGCTGCTGCTGTCGTT 60.525 52.632 17.00 0.00 40.48 3.85
1374 1434 2.109799 AGTTGCTGCTGCTGTCGT 59.890 55.556 17.00 0.00 40.48 4.34
1375 1435 1.501337 TTCAGTTGCTGCTGCTGTCG 61.501 55.000 17.00 3.53 40.48 4.35
1376 1436 0.237761 CTTCAGTTGCTGCTGCTGTC 59.762 55.000 17.00 7.06 40.48 3.51
1377 1437 1.793134 GCTTCAGTTGCTGCTGCTGT 61.793 55.000 17.00 0.00 40.48 4.40
1378 1438 1.081376 GCTTCAGTTGCTGCTGCTG 60.081 57.895 17.00 14.62 40.48 4.41
1379 1439 2.266627 GGCTTCAGTTGCTGCTGCT 61.267 57.895 17.00 0.00 40.48 4.24
1458 1530 3.879295 GCATTCAGCTAGCTAAATCACCA 59.121 43.478 18.86 0.00 41.15 4.17
1459 1531 3.879295 TGCATTCAGCTAGCTAAATCACC 59.121 43.478 18.86 6.24 45.94 4.02
1460 1532 5.450171 CATGCATTCAGCTAGCTAAATCAC 58.550 41.667 18.86 9.87 45.94 3.06
1462 1534 4.082895 CCCATGCATTCAGCTAGCTAAATC 60.083 45.833 18.86 9.63 45.94 2.17
1463 1535 3.825014 CCCATGCATTCAGCTAGCTAAAT 59.175 43.478 18.86 12.81 45.94 1.40
1464 1536 3.216800 CCCATGCATTCAGCTAGCTAAA 58.783 45.455 18.86 10.52 45.94 1.85
1465 1537 2.854963 CCCATGCATTCAGCTAGCTAA 58.145 47.619 18.86 12.46 45.94 3.09
1466 1538 1.544093 GCCCATGCATTCAGCTAGCTA 60.544 52.381 18.86 2.62 45.94 3.32
1498 1570 4.643334 TGTAGGCTAGGTAGTACACACATG 59.357 45.833 2.06 0.00 0.00 3.21
1501 1573 5.649782 TTTGTAGGCTAGGTAGTACACAC 57.350 43.478 2.06 0.00 0.00 3.82
1546 1622 2.943036 TGTGTTGGAAAGTAGTCCCC 57.057 50.000 0.00 0.00 36.80 4.81
1551 1627 9.612620 GACAAAAATCTATGTGTTGGAAAGTAG 57.387 33.333 0.00 0.00 0.00 2.57
1579 1655 2.610727 GCCCATATAACGAGCCTCTCAC 60.611 54.545 0.00 0.00 0.00 3.51
1590 1700 0.184211 ACAACCCCCGCCCATATAAC 59.816 55.000 0.00 0.00 0.00 1.89
1604 1714 4.909880 GCTCGTGAAATAAAAGACACAACC 59.090 41.667 0.00 0.00 33.56 3.77
1665 1775 7.664082 AACATTGAAACAAACAACATGACAA 57.336 28.000 0.00 0.00 0.00 3.18
1666 1776 8.763049 TTAACATTGAAACAAACAACATGACA 57.237 26.923 0.00 0.00 0.00 3.58
1667 1777 9.687717 CTTTAACATTGAAACAAACAACATGAC 57.312 29.630 0.00 0.00 0.00 3.06
1706 1816 4.141756 TGCATGAAAAACAGGGAACACATT 60.142 37.500 0.00 0.00 0.00 2.71
1707 1817 3.387374 TGCATGAAAAACAGGGAACACAT 59.613 39.130 0.00 0.00 0.00 3.21
1708 1818 2.762887 TGCATGAAAAACAGGGAACACA 59.237 40.909 0.00 0.00 0.00 3.72
1709 1819 3.451141 TGCATGAAAAACAGGGAACAC 57.549 42.857 0.00 0.00 0.00 3.32
1720 1830 3.570125 TGTCACCCGTAAATGCATGAAAA 59.430 39.130 0.00 0.00 0.00 2.29
1723 1833 2.481289 TGTCACCCGTAAATGCATGA 57.519 45.000 0.00 0.00 0.00 3.07
1724 1834 2.227626 TGTTGTCACCCGTAAATGCATG 59.772 45.455 0.00 0.00 0.00 4.06
1725 1835 2.509569 TGTTGTCACCCGTAAATGCAT 58.490 42.857 0.00 0.00 0.00 3.96
1766 1876 1.072173 TGTCATGAGGTGGGACAAGTG 59.928 52.381 0.00 0.00 44.16 3.16
1767 1877 1.434188 TGTCATGAGGTGGGACAAGT 58.566 50.000 0.00 0.00 44.16 3.16
1768 1878 2.566833 TTGTCATGAGGTGGGACAAG 57.433 50.000 0.00 0.00 44.14 3.16
1769 1879 1.492599 TGTTGTCATGAGGTGGGACAA 59.507 47.619 0.00 0.00 46.09 3.18
1770 1880 1.135960 TGTTGTCATGAGGTGGGACA 58.864 50.000 0.00 0.00 39.60 4.02
1771 1881 1.072331 AGTGTTGTCATGAGGTGGGAC 59.928 52.381 0.00 0.00 0.00 4.46
1772 1882 1.434188 AGTGTTGTCATGAGGTGGGA 58.566 50.000 0.00 0.00 0.00 4.37
1773 1883 2.276732 AAGTGTTGTCATGAGGTGGG 57.723 50.000 0.00 0.00 0.00 4.61
1774 1884 3.997021 GAGTAAGTGTTGTCATGAGGTGG 59.003 47.826 0.00 0.00 0.00 4.61
1775 1885 4.449068 GTGAGTAAGTGTTGTCATGAGGTG 59.551 45.833 0.00 0.00 0.00 4.00
1776 1886 4.100963 TGTGAGTAAGTGTTGTCATGAGGT 59.899 41.667 0.00 0.00 0.00 3.85
1777 1887 4.631131 TGTGAGTAAGTGTTGTCATGAGG 58.369 43.478 0.00 0.00 0.00 3.86
1778 1888 6.603237 TTTGTGAGTAAGTGTTGTCATGAG 57.397 37.500 0.00 0.00 0.00 2.90
1779 1889 6.993786 TTTTGTGAGTAAGTGTTGTCATGA 57.006 33.333 0.00 0.00 0.00 3.07
1780 1890 6.692681 CCTTTTTGTGAGTAAGTGTTGTCATG 59.307 38.462 0.00 0.00 0.00 3.07
1781 1891 6.183360 CCCTTTTTGTGAGTAAGTGTTGTCAT 60.183 38.462 0.00 0.00 0.00 3.06
1782 1892 5.124776 CCCTTTTTGTGAGTAAGTGTTGTCA 59.875 40.000 0.00 0.00 0.00 3.58
1783 1893 5.355910 TCCCTTTTTGTGAGTAAGTGTTGTC 59.644 40.000 0.00 0.00 0.00 3.18
1784 1894 5.124936 GTCCCTTTTTGTGAGTAAGTGTTGT 59.875 40.000 0.00 0.00 0.00 3.32
1785 1895 5.124776 TGTCCCTTTTTGTGAGTAAGTGTTG 59.875 40.000 0.00 0.00 0.00 3.33
1786 1896 5.258051 TGTCCCTTTTTGTGAGTAAGTGTT 58.742 37.500 0.00 0.00 0.00 3.32
1787 1897 4.850680 TGTCCCTTTTTGTGAGTAAGTGT 58.149 39.130 0.00 0.00 0.00 3.55
1796 1906 2.158986 TGTTGGCATGTCCCTTTTTGTG 60.159 45.455 0.00 0.00 0.00 3.33
1798 1908 2.158986 TGTGTTGGCATGTCCCTTTTTG 60.159 45.455 0.00 0.00 0.00 2.44
1801 1911 1.895131 GATGTGTTGGCATGTCCCTTT 59.105 47.619 0.00 0.00 0.00 3.11
1840 1968 1.533469 AAGGCTGCCTTACGTCTCGT 61.533 55.000 31.49 4.90 42.74 4.18
1842 1970 1.362406 GCAAGGCTGCCTTACGTCTC 61.362 60.000 31.86 13.70 42.67 3.36
1862 1990 3.997064 CTGTCCCGCGCTTCCTCTG 62.997 68.421 5.56 0.00 0.00 3.35
1875 2003 4.182433 GCTAGGCCAGCCCTGTCC 62.182 72.222 5.01 0.00 45.91 4.02
2071 2205 9.297586 TCGTACATGTGAGACATTTTTCTATAC 57.702 33.333 9.11 0.00 36.53 1.47
2072 2206 9.863845 TTCGTACATGTGAGACATTTTTCTATA 57.136 29.630 9.11 0.00 36.53 1.31
2073 2207 8.771920 TTCGTACATGTGAGACATTTTTCTAT 57.228 30.769 9.11 0.00 36.53 1.98
2074 2208 8.596271 TTTCGTACATGTGAGACATTTTTCTA 57.404 30.769 9.11 0.00 36.53 2.10
2075 2209 7.441157 TCTTTCGTACATGTGAGACATTTTTCT 59.559 33.333 9.11 0.00 36.53 2.52
2076 2210 7.572759 TCTTTCGTACATGTGAGACATTTTTC 58.427 34.615 9.11 0.00 36.53 2.29
2077 2211 7.490962 TCTTTCGTACATGTGAGACATTTTT 57.509 32.000 9.11 0.00 36.53 1.94
2078 2212 7.672983 ATCTTTCGTACATGTGAGACATTTT 57.327 32.000 9.11 0.00 36.53 1.82
2079 2213 8.948631 ATATCTTTCGTACATGTGAGACATTT 57.051 30.769 9.11 0.00 36.53 2.32
2080 2214 9.464714 GTATATCTTTCGTACATGTGAGACATT 57.535 33.333 9.11 0.00 36.53 2.71
2081 2215 8.630037 TGTATATCTTTCGTACATGTGAGACAT 58.370 33.333 9.11 1.95 39.91 3.06
2082 2216 7.992008 TGTATATCTTTCGTACATGTGAGACA 58.008 34.615 9.11 0.00 0.00 3.41
2083 2217 8.851960 TTGTATATCTTTCGTACATGTGAGAC 57.148 34.615 9.11 0.00 0.00 3.36
2084 2218 9.463443 CATTGTATATCTTTCGTACATGTGAGA 57.537 33.333 9.11 4.72 0.00 3.27
2085 2219 9.249457 ACATTGTATATCTTTCGTACATGTGAG 57.751 33.333 9.11 2.05 0.00 3.51
2086 2220 9.244799 GACATTGTATATCTTTCGTACATGTGA 57.755 33.333 9.11 0.00 0.00 3.58
2087 2221 9.249457 AGACATTGTATATCTTTCGTACATGTG 57.751 33.333 9.11 0.00 0.00 3.21
2185 2319 9.778741 ACACTTTTCGTATATATCATGGACATT 57.221 29.630 0.00 0.00 0.00 2.71
2187 2321 9.687210 GTACACTTTTCGTATATATCATGGACA 57.313 33.333 0.00 0.00 0.00 4.02
2188 2322 9.687210 TGTACACTTTTCGTATATATCATGGAC 57.313 33.333 0.00 0.00 0.00 4.02
2308 2442 9.513906 TGTTCTACATTTTTGGAATACATCAGA 57.486 29.630 0.00 0.00 0.00 3.27
2395 2529 9.796120 CACGGTTAACATTTTGGAATATGTAAT 57.204 29.630 8.10 0.00 34.04 1.89
2396 2530 8.794553 ACACGGTTAACATTTTGGAATATGTAA 58.205 29.630 8.10 0.00 34.04 2.41
2397 2531 8.338072 ACACGGTTAACATTTTGGAATATGTA 57.662 30.769 8.10 0.00 34.04 2.29
2398 2532 7.222000 ACACGGTTAACATTTTGGAATATGT 57.778 32.000 8.10 0.00 36.58 2.29
2402 2536 7.964011 CGTTATACACGGTTAACATTTTGGAAT 59.036 33.333 8.10 0.69 45.89 3.01
2403 2537 7.296660 CGTTATACACGGTTAACATTTTGGAA 58.703 34.615 8.10 0.00 45.89 3.53
2404 2538 6.829703 CGTTATACACGGTTAACATTTTGGA 58.170 36.000 8.10 0.00 45.89 3.53
2430 2564 3.324117 GTTTTAGTGGGAGGAGACGTTC 58.676 50.000 0.00 0.00 0.00 3.95
2431 2565 2.038164 GGTTTTAGTGGGAGGAGACGTT 59.962 50.000 0.00 0.00 0.00 3.99
2432 2566 1.622312 GGTTTTAGTGGGAGGAGACGT 59.378 52.381 0.00 0.00 0.00 4.34
2433 2567 1.621814 TGGTTTTAGTGGGAGGAGACG 59.378 52.381 0.00 0.00 0.00 4.18
2434 2568 2.370849 TGTGGTTTTAGTGGGAGGAGAC 59.629 50.000 0.00 0.00 0.00 3.36
2435 2569 2.696775 TGTGGTTTTAGTGGGAGGAGA 58.303 47.619 0.00 0.00 0.00 3.71
2436 2570 3.610911 GATGTGGTTTTAGTGGGAGGAG 58.389 50.000 0.00 0.00 0.00 3.69
2437 2571 2.027561 CGATGTGGTTTTAGTGGGAGGA 60.028 50.000 0.00 0.00 0.00 3.71
2438 2572 2.290071 ACGATGTGGTTTTAGTGGGAGG 60.290 50.000 0.00 0.00 0.00 4.30
2439 2573 3.000727 GACGATGTGGTTTTAGTGGGAG 58.999 50.000 0.00 0.00 0.00 4.30
2440 2574 2.369203 TGACGATGTGGTTTTAGTGGGA 59.631 45.455 0.00 0.00 0.00 4.37
2441 2575 2.773487 TGACGATGTGGTTTTAGTGGG 58.227 47.619 0.00 0.00 0.00 4.61
2442 2576 4.822036 TTTGACGATGTGGTTTTAGTGG 57.178 40.909 0.00 0.00 0.00 4.00
2443 2577 4.675114 GCTTTTGACGATGTGGTTTTAGTG 59.325 41.667 0.00 0.00 0.00 2.74
2444 2578 4.261447 GGCTTTTGACGATGTGGTTTTAGT 60.261 41.667 0.00 0.00 0.00 2.24
2445 2579 4.226761 GGCTTTTGACGATGTGGTTTTAG 58.773 43.478 0.00 0.00 0.00 1.85
2446 2580 3.632604 TGGCTTTTGACGATGTGGTTTTA 59.367 39.130 0.00 0.00 0.00 1.52
2447 2581 2.428890 TGGCTTTTGACGATGTGGTTTT 59.571 40.909 0.00 0.00 0.00 2.43
2448 2582 2.028130 TGGCTTTTGACGATGTGGTTT 58.972 42.857 0.00 0.00 0.00 3.27
2449 2583 1.686355 TGGCTTTTGACGATGTGGTT 58.314 45.000 0.00 0.00 0.00 3.67
2450 2584 1.541147 CATGGCTTTTGACGATGTGGT 59.459 47.619 0.00 0.00 0.00 4.16
2451 2585 1.811965 TCATGGCTTTTGACGATGTGG 59.188 47.619 0.00 0.00 0.00 4.17
2452 2586 3.557577 TTCATGGCTTTTGACGATGTG 57.442 42.857 0.00 0.00 0.00 3.21
2453 2587 4.789012 ATTTCATGGCTTTTGACGATGT 57.211 36.364 0.00 0.00 0.00 3.06
2454 2588 7.760131 ATTTATTTCATGGCTTTTGACGATG 57.240 32.000 0.00 0.00 0.00 3.84
2455 2589 8.465999 TGTATTTATTTCATGGCTTTTGACGAT 58.534 29.630 0.00 0.00 0.00 3.73
2456 2590 7.821652 TGTATTTATTTCATGGCTTTTGACGA 58.178 30.769 0.00 0.00 0.00 4.20
2457 2591 7.967854 TCTGTATTTATTTCATGGCTTTTGACG 59.032 33.333 0.00 0.00 0.00 4.35
2458 2592 9.638239 TTCTGTATTTATTTCATGGCTTTTGAC 57.362 29.630 0.00 0.00 0.00 3.18
2464 2598 9.590451 CACATTTTCTGTATTTATTTCATGGCT 57.410 29.630 0.00 0.00 35.91 4.75
2465 2599 9.585099 TCACATTTTCTGTATTTATTTCATGGC 57.415 29.630 0.00 0.00 35.91 4.40
2473 2607 9.182214 ACTGATGCTCACATTTTCTGTATTTAT 57.818 29.630 0.00 0.00 36.35 1.40
2474 2608 8.453320 CACTGATGCTCACATTTTCTGTATTTA 58.547 33.333 0.00 0.00 36.35 1.40
2475 2609 7.310664 CACTGATGCTCACATTTTCTGTATTT 58.689 34.615 0.00 0.00 36.35 1.40
2476 2610 6.849502 CACTGATGCTCACATTTTCTGTATT 58.150 36.000 0.00 0.00 36.35 1.89
2477 2611 6.432607 CACTGATGCTCACATTTTCTGTAT 57.567 37.500 0.00 0.00 36.35 2.29
2478 2612 5.868043 CACTGATGCTCACATTTTCTGTA 57.132 39.130 0.00 0.00 36.35 2.74
2479 2613 4.761235 CACTGATGCTCACATTTTCTGT 57.239 40.909 0.00 0.00 36.35 3.41
2503 2637 2.569404 CCAGAGTTCAAGGCCTAGACTT 59.431 50.000 5.16 0.00 0.00 3.01
2504 2638 2.183679 CCAGAGTTCAAGGCCTAGACT 58.816 52.381 5.16 10.76 0.00 3.24
2505 2639 1.903183 ACCAGAGTTCAAGGCCTAGAC 59.097 52.381 5.16 5.20 0.00 2.59
2506 2640 1.902508 CACCAGAGTTCAAGGCCTAGA 59.097 52.381 5.16 0.00 0.00 2.43
2507 2641 1.677217 GCACCAGAGTTCAAGGCCTAG 60.677 57.143 5.16 0.00 0.00 3.02
2508 2642 0.324943 GCACCAGAGTTCAAGGCCTA 59.675 55.000 5.16 0.00 0.00 3.93
2509 2643 1.073897 GCACCAGAGTTCAAGGCCT 59.926 57.895 0.00 0.00 0.00 5.19
2510 2644 2.328099 CGCACCAGAGTTCAAGGCC 61.328 63.158 0.00 0.00 0.00 5.19
2511 2645 2.970974 GCGCACCAGAGTTCAAGGC 61.971 63.158 0.30 0.00 0.00 4.35
2512 2646 1.302033 AGCGCACCAGAGTTCAAGG 60.302 57.895 11.47 0.00 0.00 3.61
2513 2647 1.572085 CCAGCGCACCAGAGTTCAAG 61.572 60.000 11.47 0.00 0.00 3.02
2514 2648 1.597854 CCAGCGCACCAGAGTTCAA 60.598 57.895 11.47 0.00 0.00 2.69
2515 2649 2.031012 CCAGCGCACCAGAGTTCA 59.969 61.111 11.47 0.00 0.00 3.18
2516 2650 2.527951 ATCCCAGCGCACCAGAGTTC 62.528 60.000 11.47 0.00 0.00 3.01
2517 2651 1.264749 TATCCCAGCGCACCAGAGTT 61.265 55.000 11.47 0.00 0.00 3.01
2518 2652 1.685765 TATCCCAGCGCACCAGAGT 60.686 57.895 11.47 0.00 0.00 3.24
2519 2653 1.227380 GTATCCCAGCGCACCAGAG 60.227 63.158 11.47 0.00 0.00 3.35
2520 2654 2.731571 GGTATCCCAGCGCACCAGA 61.732 63.158 11.47 0.13 0.00 3.86
2521 2655 2.203070 GGTATCCCAGCGCACCAG 60.203 66.667 11.47 0.00 0.00 4.00
2522 2656 3.006133 TGGTATCCCAGCGCACCA 61.006 61.111 11.47 11.01 38.72 4.17
2523 2657 2.513897 GTGGTATCCCAGCGCACC 60.514 66.667 11.47 7.93 42.94 5.01
2524 2658 1.815421 CAGTGGTATCCCAGCGCAC 60.815 63.158 11.47 0.00 42.94 5.34
2525 2659 2.238847 GACAGTGGTATCCCAGCGCA 62.239 60.000 11.47 0.00 42.94 6.09
2526 2660 1.521681 GACAGTGGTATCCCAGCGC 60.522 63.158 0.00 0.00 42.94 5.92
2527 2661 1.144057 GGACAGTGGTATCCCAGCG 59.856 63.158 0.00 0.00 42.94 5.18
2528 2662 0.179000 CAGGACAGTGGTATCCCAGC 59.821 60.000 0.00 0.00 42.94 4.85
2529 2663 0.179000 GCAGGACAGTGGTATCCCAG 59.821 60.000 0.00 0.00 42.94 4.45
2530 2664 0.252696 AGCAGGACAGTGGTATCCCA 60.253 55.000 0.00 0.00 38.87 4.37
2531 2665 1.789523 TAGCAGGACAGTGGTATCCC 58.210 55.000 0.00 0.00 35.38 3.85
2532 2666 2.158943 GGTTAGCAGGACAGTGGTATCC 60.159 54.545 0.00 0.00 34.66 2.59
2533 2667 2.481449 CGGTTAGCAGGACAGTGGTATC 60.481 54.545 0.00 0.00 30.74 2.24
2534 2668 1.480954 CGGTTAGCAGGACAGTGGTAT 59.519 52.381 0.00 0.00 30.74 2.73
2535 2669 0.892755 CGGTTAGCAGGACAGTGGTA 59.107 55.000 0.00 0.00 0.00 3.25
2536 2670 1.671742 CGGTTAGCAGGACAGTGGT 59.328 57.895 0.00 0.00 0.00 4.16
2537 2671 4.598257 CGGTTAGCAGGACAGTGG 57.402 61.111 0.00 0.00 0.00 4.00
2548 2682 2.436646 CTGCAGGTGGGCGGTTAG 60.437 66.667 5.57 0.00 35.41 2.34
2549 2683 4.028490 CCTGCAGGTGGGCGGTTA 62.028 66.667 25.53 0.00 38.52 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.