>input_sequence_72837
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-----------------------------------------------------AGCAACAGAGCAC---------GCAGT
GAAGTTCAGATAAGAAAAAACTAAGCTAGTTTAAGTGGTGATTAATCAGTTCATCACCAGCTTCTACCTATTA-------
-GCTCATGGGTTCCACAGAAGCCATCCTGTCTGCACAGATCGCCAGCCAATTCTTCAGCACCAACAAGGTACATGCAGCT
CATAACTCATAAGCTTCATGGCCATTCATGTTTGTTAAGTTC-----------------------------TACATTTGT
GTTCTTATGTTTTTTTTTTCTTCTGCTCTCTATATTTGTTCTCTGCAAGTAGTTCATGGAGAGCCCCGTACCGCAAATTC
AGAAGCAATCTGATGGCGGCAGAAGACAGACGACGGAGAAGAAGGAGCTGAACAATGATTCTGCTGTCAAGCAACGACA-
--------GCAGCAGCAACTGAAGCCACGGTTCGCCCTGGAGCTGGATGGGCTCAATTGCTTCGAGACCCTTGTCCCTCT
CTGA---AGTGGTGATTTAGCTAGCTGAATGCATGGGCTCCTTGATTTTCATG----TGTGTACTACCTAGCCTACAAAA
ACGTCTTTTATTTTGATTAGGGGGGACTACTTTCCAACACATAGATTTTTGTCTGTG-----------------------
-----------AGAGGCTCGTTATATGGGCGGGGGTTGTGTCTTTTATTTCACGAGCGATCGTTAATTCGAAAATAAA--
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>chr2D_1_TraesCS2D01G010600
GAGAAGACTCCAGGCCTGGCTTCTTCATCACCTGCACCAACACACATTTCAGTTCGGTGGGCTGGGACCGGTCCTTGAAG
TTTGCCGTTGGCCCAATTTAGGCAGTCGTTGTGTCCAGGAGGCAGAAGCCCAGGCTACACCTGCCCTCCCCTCATAAAAA
AAAGGCGATTGCTGCCCAAAAACTACCACTTTTGTTTTGCGGGGACCAAAAATTACCACTTTGGGTACTAGAAAACATTC
ATGCTGACATGTTGTAGTTATTCAAAAAAATAATCTGACATGATATAGCCATTTGGTTTTTTTTAAGACAATGATGTAGC
CATTTGGTGAAATTTTAGCAAAATATCACACGACCCAGATATGTGTTCCAATCTTAGGCCTGGTGGGCTGGCACCTGCGC
AACACAC--ATTTCAGTTTGCTGGGCTGGCACCGGTCCTTGAACTCTGTAGTTGGCCCAATCTTAGGCAGTTGCAGTGTC
CAGGAGAACACTACCACTTATTTTTATTTATTTTTGCCTAAAAAAACTTATTTTTATTTATTTTTGCGGGGACCGGAAAC
CACCACTTTTGGAACTTGCAGAAAACATTCATTCTGACATATTGTAGTTATCCAAAAAGA-A-TCTGACATGATGTAGCC
ATTTGGTGAAAATTTAGCAAAATATCACACGACCCAGATAGTTGTTCCTATA----CATCCATCCAATTTTCCTCGCCTG
TCACTATATGTCGTCCATCATGAGAG--AAAAAGCGCAAAAAGTGCACAACCCAGATATGTGTTGCAGTGTGGATAAGAT
GATGTACACACATAGTGCTAGAAACACTCCGGTGGGTGAGCTACGTGGACTCAATGGCACCAACTAATTGAGGCTCTTTC
TTGCTAGCTAGTGATAAGCCAGCCATATCCCCATGAATCTCAAGCCATTGAAACAACCAGAACTCGACCGATCCCGACAA
TGTTCTG-CACTGGTTGGTTGCTATATATAGA--CATGATCGAATCTGCATGCAGCAACAGAGCAC---------GCAGT
GAAGTTCAGATAAGAAAAAACTAAGCTAGTTTAAGTGGTGATTAATCAGTTCATCACCAGCTTCTACCTATTA-------
-GCTCATGGGTTCCACAGAAGCCATCCTGTCTGCACAGATCGCCAGCCAATTCTTCAGCACCAACAAGGTACATGCAGCT
CATAACTCATAAGCTTCATGGCCATTCATGTTTGTTAAGTTC-----------------------------TACATTTGT
GTTCTTATGTTTTTTTTTTCTTCTGCTCTCTATATTTGTTCTCTGCAAGTAGTTCATGGAGAGCCCCGTACCGCAAATTC
AGAAGCAATCTGATGGCGGCAGAAGACAGACGACGGAGAAGAAGGAGCTGAACAATGATTCTGCTGTCAAGCAACGACA-
--------GCAGCAGCAACTGAAGCCACGGTTCGCCCTGGAGCTGGATGGGCTCAATTGCTTCGAGACCCTTGTCCCTCT
CTGA---AGTGGTGATTTAGCTAGCTGAATGCATGGGCTCCTTGATTTTCATG----TGTGTACTACCTAGCCTACAAAA
ACGTCTTTTATTTTGATTAGGGGGGACTACTTTCCAACACATAGATTTTTGTCTGTG-----------------------
-----------AGAGGCTCGTTATATGGGCGGGGGTTGTGTCTTTTATTTCACGAGCGATCGTTAATTCGAAAATAAATT
TTTATGTTAACAGATTGTCATGTTGTTTGTTTCAATGTTAAAGGACTCGATAATTAATGTGTTCCCTGTTTTTCATGCAT
TTACGGGTGACAACATTTGTCCCAACTCATGACAACACTTGTCCCACCTCATGACAACACTTACTCACAAAAAGGGACAT
GCCAACACATCGCCG------------------ATGTCTCGCTTGACACGAGACGTAAGGCAGCCTTGCCAGAGGAAGCG
CGGGACAGGGCTGGCCTAGCTCGCGGGGGGATACAACCTCGTTTTTTTTCTTTTTTTTTTCATGTTTTGTTTTTGTATTC
TGTTTTATTTTTAAACTTTTCTTTATACTTTCACACATTC------TAAATATATATGTATCACAAAAAACAGTCCACAT
AAAATATTTGAAAAATGTTAATATACCATTTACATGTCAAATGTGTATAGAAAAATGTCTCACATGTACGAAAGATATAC
AATGTCTATAAAAAATTGATCATGTATTAAAAAATGTTAATTGAGCATTTGATAAAAATATTAATCACGTATTTAAAAAA
TGTCCATGATATATACGAAAAGTGTACAATGTGTACGAAAAAAAGAGTACTCTTCAAAGATAAAAGATTGAAAAAAAATT
AATCATCTATTTAAAAAATGTTAAATGTGTATAACAAATATTCTGATGTATTCCAAAAATGTAGAACATGTATTAAAAAA
TTAACATGAAAAATAAATTTTAAAAAATGTTGACAGTGAAAAATGTTAATTACATATTCCAAAATGTTAACCGTGTATAA
CGGGAACGTCTCCTCCCACTAAAACCACATCGTCAAAAGCCATGAAATAAATACAGAAAATGTGAGCATCAGTGCCAAGT
CTAGGCCTTGAACTCTGGTGCGCTGGGATACCACTGTCCTGCTAACCGCCCACCTGCAGGTTGCTTCGCATAAAAATATT
CCTGATATATAAAGAAAATGTATAAAGTGTGTATGAAAAAAGTAGTCATCAAACAAAAAGAA
>chr2A_307
ACTTA---------------------------------------------------------------------------
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--------------------TTTTTATTCATTTTTGCCTAAAAAAACTTATTTTTATTTATTTTTGCGGGGACCAAAAAC
CACCACTTTTGGAACTTGCAGAAAACATTCATGCTGACATATTGTGGTTATCCAAAAAAATA-TCTGACATGATGTAGCC
ATTTGGTGATAATTTAGCAAAATATCACACGACCCAGATATTTGTTCCTATA----CATCCA----AATTTCCTCGCCTG
TCACTATATGTCATCCATCATGAGAG--AAAAAGCGCAAAAAGTGCACAACCCATAGATGTGTTGCAGTGTGGATAAGAT
GATGTACACACATAGTGCTAGAAACACTCCGGTGGGTGAGCTACGTGGAGCCAATGGCACCAACTAATTGAGGCTCTCTC
TTGCTAGCTAGAGATAAACCAGCCATATCCCCATGAATCTCAAGCCATTGAAACAACCAGAACTCGACCGAACCCGACAA
TGTTCTG-CACTGGTTGGTTGCTATATATATAGGCATGATCGAATCTGCATGCAGCAACAGAGCAC---------GCAGT
GAAGTTCAGATAAGAAAC-ACTAAGCTAGTTTAAGTGGTGATTAGTTAGTTCATCACC------TACCTATTA-------
-GCTCATGGGTTCCATGGAAGCCATCCTGTCTGCGCAGATCGCCAGCCAATTCTTCAGCACCAACAAGGTACATGCAG--
-----CTCATAAGCTTCATGGTAATTCATGTTTGTTTTTTGACCGGAATAATTCATGTTTGTTAAGTTCTATACATTTGT
GTTCTTATGTTTTTTTT-----CTGTTCTCTATATTTGTTTTCTGCA----GTTCAATGCGAGCCCCGTACCGCAAATGC
AGAAGCAATCTGATGCCAGCAGAAGACAGG---CGGAGAAGAAGGAGATGAACAATGATTCTGCTGTCAAGATTGCTGGC
AAGCAACGGCAGCAGCAACTGAAGCCACGGTTCGCCCTGGAGCTGGATGGGCTCAATTGCTTCGAGACCCTTGTCCCTCT
CTGA---AGCACT-----AGTTAGCTAA----ATGGGCTCCTTGATTATTATTTTTTTGTGTACTACCTAGCCTACAAAA
ACGTCTTTTATTTTGATACGGAGGGAGTACTTTCCAACACATAGATTTTTGTCTTTGTCTCAAAAGAAAAAAACATAGAT
TTTTGTCTGCGAGAGGCTCATTATATGGGCGGGAGTTGTGTCTTTTATTTCACGAGTGATTATTAACTCGTAAATACATT
TTTATGTTAACAGA---TCATGTTGTTTGTTTCAATGTTAAAGGACTCGATAATT----TGTTCCCTGTGTTGATTGCAT
TTACGTGTGACAACATTTGTCCCAACTCATGACAA----------------------CACTTACTAAAAAGAAGGGACAT
GCCAACACATTGCCCTACAATTTGGGCGCGCCTATGTCTCGCTTGACGCAAGACGTAAGGCAGCCTTGCTAGAGGGAGCG
CGAGACAGGGCTGGCCTAGCACGCGGGAGGACGCAACCTCGTTTTTTTTCTTTTTTTTTCATGTTTTTATTTTCATATTC
TTTTTTCCTTTTTATACTTTTTTATAATTTCAAATATATATATACATATATATATATATATCACAAATAACATTCTACAT
AAAATATTTGAAAAATGTTAATCTACCATTTGCATGTTAAATGT------------------------------------
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>chr2B_307
CCAAT---------------------------------------------------------------------------
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----------------------------------------------------CTTAGGCCTGGTGGGCTGGAACCTGCCC
AACACACACATTCCAGTTTGGTGGGCTGGCACCGGTCCTTGAACTCTGTCGGCTGTCCAGGAGGCGGAAGC--------C
CAGGAGAACACTACCACTTATTTTTATTAATTTGTCTC-AAAAAAATTTATTTTTATTAATTTTTTCAGGGACCAAAAAC
CACCACTTTTGGAACTTATAGAAAGCATTCATGCTGACATATTGTAGTTATCTAAAAAATAATTCTGACATGATGTAGCC
ATTTGGTGAAATTTTAGCAAAATATCACACGACCCAGATATTTGTTCATAAATATCCATCCA----ATTTTCCTCGCCTG
TCACTATACGTCATCCATCATGAGGGGAAAAAAGCGCAAAAAGTGCACAGCCCAGATGTGTGTTGCAGTGTGGATAAGAT
GATGTACACACATAGTGCTAGAAACACTCCGCTAGGTGAGCTACGTGGAGCCAATGGCACCAACAAATTGAGGCTCTTTC
TTGGTAGCTAGAGATAAGCCAGCCATATCCCCATGAATCTCAAGCCGTTGAAACAACCCGAACTCGACCGATCCCGACAA
TGTTCTTACACTGGTTGGTTGCTATATATAGA--CATGATCGAATCAGCATGCAGCAACAGAGCTTGCCATATATGCAGT
GAAGTTCAGATAAGAAAC-ACTAAGCTAGTTTAAGTGGTGATTAATCAGTTCATCACCAGCTTCTAGCTATTGGCTCATC
CGCTCATGGGTTCGACAGAGGCCATCCTGTCTGCACAGATCGCCAGCCAATTCTTCAGCACCAACAAGGTACAAGCAGCT
C-------ATAAGCTCCATGGCAATTCATGTTTGCTAAGTTC-----------------------------TACATTTGT
GTTCTTATGTTTTTTTTTTTG---GCTCTCTATATTTGTACTCTGCA----GTTCATGGCGAGCCCCGTGCCGCAAACGC
CGAAGCAATCTGATGCCAGCGGAAGACACG---CGGAGAAGAAGGAGCTGAACAATGATTCTGCCGTCAAGGTTGCTGGG
AAGCAACGAGC---GCAACTGAAGCCACGGTTCGCCCCGGAGCTGGATGGGCTCAATTGCTTCGAGACCCTTGTCCCTCT
CTGATCAAGCACC-----AGCTAGCTGAATGCACGGGCTCCTTGATTTC-------------------------------
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-----------------------------------TTGTGTCTACT----------------------------------
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>SNPs
SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S------S-
------------S-------S----------------------------S-SSS-S---SSSSSS--S--SSSSSSSSS-
----------------------------S---------------------------------------------SS----
--------------------------------S-------------------------S---------------------
----------------------------------------S---------------------SSSS--------------
------------S-------------------------------------------------------------------
-------------------------------------------------SS-----------------------------
-----------S--------------------------------------------------------------------
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-----------------SS-------------------------------------------------------------
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-SSSS-----------------S---------------------------------------------------------
-------------------SSS-------------------------SSSS--------S------------------S-
---------------S-S-----------SSSS--------------------------------------SSSSSSSS-
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---------SSS-SSSSS-------------------------------S--S---------------------------
-----------------SS--S----S---------------------------S-------------------------
-------------------S-------------S----------------------S---SS----S---S-----S---
--------------SSS--------------------------------------SSSS----------S--SSS-----
-----S-----------------------------SSSSSSSSSSSSSSSSSSSSSS--------S-S--S---------
----------S---S--------------------------------S-S-------------------S-----S----
--S-----------------S------S---SS--------------------------SSSSS----S----SS-----
-S----SS----S-SSS---S--SSS-S--SS-SSSSS-S--------S--------S---------S----S--S----
----------------------S--------S-----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_31
-----------AGGCCTGGCTTCTTCATCAC-------------------------------------------------
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>reverse_1329
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------------------------------------------------GTAGTTCATGGAGAGCCCCG------------
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>forward_33
-------------GCCTGGCTTCTTCATCACCT-----------------------------------------------
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>reverse_1391
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------------------------------CGACGGAGAAGAAGGAGCTG------------------------------
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>forward_46
--------------------------ATCACCTGCACCAACACACA----------------------------------
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>reverse_1700
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-------------------GTTATATGGGCGGGGGTTGT-----------------------------------------
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>forward_47
---------------------------TCACCTGCACCAACACACAT---------------------------------
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>reverse_1876
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-----------------------------------CACTTGTCCCACCTCATGACA------------------------
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