Multiple sequence alignment - TraesCS2D01G009500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G009500 chr2D 100.000 2481 0 0 1 2481 5152784 5150304 0.000000e+00 4582.0
1 TraesCS2D01G009500 chr1D 94.570 663 26 9 1827 2480 12705363 12704702 0.000000e+00 1016.0
2 TraesCS2D01G009500 chr7A 93.788 660 30 8 1830 2480 673774843 673775500 0.000000e+00 981.0
3 TraesCS2D01G009500 chr7A 91.212 660 46 7 1830 2480 57471820 57472476 0.000000e+00 887.0
4 TraesCS2D01G009500 chr5D 92.738 661 37 6 1830 2481 445131797 445131139 0.000000e+00 944.0
5 TraesCS2D01G009500 chr5D 91.212 660 47 9 1830 2480 397451471 397452128 0.000000e+00 887.0
6 TraesCS2D01G009500 chr1A 91.933 657 45 6 1830 2481 232823585 232824238 0.000000e+00 913.0
7 TraesCS2D01G009500 chr1A 74.064 374 78 13 16 381 548395255 548395617 4.300000e-28 135.0
8 TraesCS2D01G009500 chr1A 87.879 66 8 0 317 382 465475797 465475732 7.360000e-11 78.7
9 TraesCS2D01G009500 chr3A 91.239 662 46 8 1830 2480 224997383 224996723 0.000000e+00 891.0
10 TraesCS2D01G009500 chr3D 91.284 654 51 6 1830 2481 30764972 30765621 0.000000e+00 887.0
11 TraesCS2D01G009500 chr3D 76.994 326 64 7 97 416 470876547 470876227 2.540000e-40 176.0
12 TraesCS2D01G009500 chr3D 75.197 254 52 7 3 252 610141395 610141149 2.610000e-20 110.0
13 TraesCS2D01G009500 chr2A 90.462 671 51 10 1820 2480 101135139 101134472 0.000000e+00 872.0
14 TraesCS2D01G009500 chr2A 87.853 354 29 10 1034 1375 3427654 3427303 1.070000e-108 403.0
15 TraesCS2D01G009500 chr2A 80.435 414 77 2 17 426 3441288 3440875 1.850000e-81 313.0
16 TraesCS2D01G009500 chr2A 85.537 242 30 3 1371 1611 3414901 3414664 5.300000e-62 248.0
17 TraesCS2D01G009500 chr2B 83.933 890 83 31 804 1679 6320659 6321502 0.000000e+00 797.0
18 TraesCS2D01G009500 chr2B 82.075 530 83 7 3 528 6318864 6319385 2.260000e-120 442.0
19 TraesCS2D01G009500 chr2B 83.851 161 25 1 1669 1829 683746611 683746452 4.270000e-33 152.0
20 TraesCS2D01G009500 chr2B 85.484 124 18 0 1707 1830 6321499 6321622 2.000000e-26 130.0
21 TraesCS2D01G009500 chr1B 76.227 387 76 13 1 381 623897361 623897737 9.060000e-45 191.0
22 TraesCS2D01G009500 chr6A 73.995 373 77 16 19 384 481119846 481120205 1.550000e-27 134.0
23 TraesCS2D01G009500 chr4D 73.611 288 62 12 95 375 410409566 410409846 5.650000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G009500 chr2D 5150304 5152784 2480 True 4582.000000 4582 100.000000 1 2481 1 chr2D.!!$R1 2480
1 TraesCS2D01G009500 chr1D 12704702 12705363 661 True 1016.000000 1016 94.570000 1827 2480 1 chr1D.!!$R1 653
2 TraesCS2D01G009500 chr7A 673774843 673775500 657 False 981.000000 981 93.788000 1830 2480 1 chr7A.!!$F2 650
3 TraesCS2D01G009500 chr7A 57471820 57472476 656 False 887.000000 887 91.212000 1830 2480 1 chr7A.!!$F1 650
4 TraesCS2D01G009500 chr5D 445131139 445131797 658 True 944.000000 944 92.738000 1830 2481 1 chr5D.!!$R1 651
5 TraesCS2D01G009500 chr5D 397451471 397452128 657 False 887.000000 887 91.212000 1830 2480 1 chr5D.!!$F1 650
6 TraesCS2D01G009500 chr1A 232823585 232824238 653 False 913.000000 913 91.933000 1830 2481 1 chr1A.!!$F1 651
7 TraesCS2D01G009500 chr3A 224996723 224997383 660 True 891.000000 891 91.239000 1830 2480 1 chr3A.!!$R1 650
8 TraesCS2D01G009500 chr3D 30764972 30765621 649 False 887.000000 887 91.284000 1830 2481 1 chr3D.!!$F1 651
9 TraesCS2D01G009500 chr2A 101134472 101135139 667 True 872.000000 872 90.462000 1820 2480 1 chr2A.!!$R4 660
10 TraesCS2D01G009500 chr2B 6318864 6321622 2758 False 456.333333 797 83.830667 3 1830 3 chr2B.!!$F1 1827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
606 611 0.036671 GGTAACTTCCTCACCCGGTG 60.037 60.0 11.73 11.73 34.45 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1568 2579 0.11734 AGGTGAAGCTACCAGGTCCT 59.883 55.0 8.39 0.0 43.37 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.217847 ACAACAAACGTCGTCGATGAAG 59.782 45.455 20.97 17.50 40.62 3.02
30 31 1.551145 GTCGTCGATGAAGAGAAGCC 58.449 55.000 9.35 0.00 0.00 4.35
37 38 4.277174 GTCGATGAAGAGAAGCCTAGATCA 59.723 45.833 0.00 0.00 0.00 2.92
65 66 1.990563 CCAATCCGTAGACACACGAAC 59.009 52.381 0.00 0.00 44.69 3.95
69 70 0.935831 CCGTAGACACACGAACGCAA 60.936 55.000 0.00 0.00 44.69 4.85
71 72 1.454276 CGTAGACACACGAACGCAAAT 59.546 47.619 0.00 0.00 44.69 2.32
82 83 3.163594 CGAACGCAAATGAATGAAGACC 58.836 45.455 0.00 0.00 0.00 3.85
83 84 3.364864 CGAACGCAAATGAATGAAGACCA 60.365 43.478 0.00 0.00 0.00 4.02
92 93 6.862469 AATGAATGAAGACCAAATCCATGT 57.138 33.333 0.00 0.00 0.00 3.21
118 119 1.470890 CACCAAACACAAACACCGACT 59.529 47.619 0.00 0.00 0.00 4.18
119 120 1.470890 ACCAAACACAAACACCGACTG 59.529 47.619 0.00 0.00 0.00 3.51
123 124 4.420168 CAAACACAAACACCGACTGAATT 58.580 39.130 0.00 0.00 0.00 2.17
125 126 2.616842 ACACAAACACCGACTGAATTCC 59.383 45.455 2.27 0.00 0.00 3.01
135 136 3.181462 CCGACTGAATTCCATGAGATCCA 60.181 47.826 2.27 0.00 0.00 3.41
137 138 4.689812 CGACTGAATTCCATGAGATCCATC 59.310 45.833 2.27 0.00 31.94 3.51
142 143 2.683211 TCCATGAGATCCATCGGAGA 57.317 50.000 0.00 0.00 45.75 3.71
159 163 3.591254 GACACACCTCACGCCCTCC 62.591 68.421 0.00 0.00 0.00 4.30
167 171 4.129737 CACGCCCTCCGACGATGT 62.130 66.667 0.00 0.00 41.02 3.06
168 172 3.823330 ACGCCCTCCGACGATGTC 61.823 66.667 0.00 0.00 41.02 3.06
176 180 2.152699 CCGACGATGTCTGACGCAC 61.153 63.158 2.98 0.00 0.00 5.34
178 182 1.080772 GACGATGTCTGACGCACCA 60.081 57.895 2.98 0.00 0.00 4.17
179 183 1.344942 GACGATGTCTGACGCACCAC 61.345 60.000 2.98 0.00 0.00 4.16
182 186 2.486636 GATGTCTGACGCACCACCGA 62.487 60.000 2.98 0.00 0.00 4.69
185 189 2.430921 CTGACGCACCACCGAGAC 60.431 66.667 0.00 0.00 0.00 3.36
186 190 3.207547 CTGACGCACCACCGAGACA 62.208 63.158 0.00 0.00 0.00 3.41
190 194 2.262915 GCACCACCGAGACAGAGG 59.737 66.667 0.00 0.00 0.00 3.69
196 200 1.464734 CACCGAGACAGAGGCTAGAA 58.535 55.000 0.00 0.00 0.00 2.10
197 201 1.819288 CACCGAGACAGAGGCTAGAAA 59.181 52.381 0.00 0.00 0.00 2.52
198 202 2.231478 CACCGAGACAGAGGCTAGAAAA 59.769 50.000 0.00 0.00 0.00 2.29
202 206 3.193691 CGAGACAGAGGCTAGAAAAGGAA 59.806 47.826 0.00 0.00 0.00 3.36
229 233 6.041523 ACCTTATTCTATCTTCAGAGAGGCAC 59.958 42.308 0.00 0.00 34.36 5.01
247 251 2.125912 CGTCGCCTCACCTTCCTG 60.126 66.667 0.00 0.00 0.00 3.86
250 254 2.125350 CGCCTCACCTTCCTGAGC 60.125 66.667 0.00 0.00 37.01 4.26
269 273 3.798202 AGCAGGATAGAAACCTTAAGCG 58.202 45.455 0.00 0.00 35.35 4.68
270 274 3.451178 AGCAGGATAGAAACCTTAAGCGA 59.549 43.478 0.00 0.00 35.35 4.93
275 279 5.187186 AGGATAGAAACCTTAAGCGAACTCA 59.813 40.000 0.00 0.00 33.55 3.41
283 287 4.025145 ACCTTAAGCGAACTCAAAAGAACG 60.025 41.667 0.00 0.00 0.00 3.95
293 297 6.416750 CGAACTCAAAAGAACGCCTAAAAATT 59.583 34.615 0.00 0.00 0.00 1.82
297 301 8.410912 ACTCAAAAGAACGCCTAAAAATTAAGT 58.589 29.630 0.00 0.00 0.00 2.24
308 312 6.424032 CCTAAAAATTAAGTAGGTGCCCTCT 58.576 40.000 0.00 0.00 34.61 3.69
309 313 6.890268 CCTAAAAATTAAGTAGGTGCCCTCTT 59.110 38.462 0.00 4.69 34.61 2.85
311 315 7.698506 AAAAATTAAGTAGGTGCCCTCTTAC 57.301 36.000 0.00 0.00 34.61 2.34
335 339 3.161450 GGGCCAGGATCTACCGCA 61.161 66.667 4.39 0.00 44.74 5.69
336 340 2.109181 GGCCAGGATCTACCGCAC 59.891 66.667 0.00 0.00 44.74 5.34
339 343 1.742768 CCAGGATCTACCGCACCTC 59.257 63.158 0.00 0.00 44.74 3.85
343 347 1.147191 AGGATCTACCGCACCTCCATA 59.853 52.381 0.00 0.00 44.74 2.74
346 350 0.106167 TCTACCGCACCTCCATAGCT 60.106 55.000 0.00 0.00 0.00 3.32
363 367 0.176910 GCTCTAAGGCCACAGGAGAC 59.823 60.000 5.01 0.33 0.00 3.36
368 372 4.459089 GGCCACAGGAGACGAGGC 62.459 72.222 0.00 0.00 38.87 4.70
375 379 1.826054 AGGAGACGAGGCAGATCGG 60.826 63.158 9.56 0.00 46.91 4.18
393 397 2.588877 CGGCGCTGGTAATGGGAG 60.589 66.667 8.83 0.00 0.00 4.30
397 401 1.227263 CGCTGGTAATGGGAGACGG 60.227 63.158 0.00 0.00 0.00 4.79
412 416 0.738762 GACGGGAAAACCCTAGACGC 60.739 60.000 0.00 0.00 34.99 5.19
417 421 0.037975 GAAAACCCTAGACGCGTGGA 60.038 55.000 20.70 2.18 0.00 4.02
421 425 1.183676 ACCCTAGACGCGTGGAAGTT 61.184 55.000 20.70 0.00 0.00 2.66
425 429 1.719780 CTAGACGCGTGGAAGTTGTTC 59.280 52.381 20.70 0.00 0.00 3.18
426 430 1.200839 GACGCGTGGAAGTTGTTCG 59.799 57.895 20.70 0.00 32.92 3.95
432 436 1.375551 GTGGAAGTTGTTCGTGTGGT 58.624 50.000 0.00 0.00 32.92 4.16
514 518 6.976934 ACATATTTTGGTCTTGTTGAACCT 57.023 33.333 0.00 0.00 0.00 3.50
532 537 9.091220 GTTGAACCTATACTAGATATCAAGGGT 57.909 37.037 5.32 0.42 0.00 4.34
533 538 8.651589 TGAACCTATACTAGATATCAAGGGTG 57.348 38.462 5.32 0.00 0.00 4.61
534 539 7.674348 TGAACCTATACTAGATATCAAGGGTGG 59.326 40.741 5.32 1.79 0.00 4.61
536 541 7.956357 ACCTATACTAGATATCAAGGGTGGAT 58.044 38.462 5.32 0.00 0.00 3.41
537 542 8.410623 ACCTATACTAGATATCAAGGGTGGATT 58.589 37.037 5.32 0.00 0.00 3.01
538 543 9.273137 CCTATACTAGATATCAAGGGTGGATTT 57.727 37.037 5.32 0.00 0.00 2.17
541 546 7.317722 ACTAGATATCAAGGGTGGATTTACC 57.682 40.000 5.32 0.00 40.10 2.85
542 547 5.228945 AGATATCAAGGGTGGATTTACCG 57.771 43.478 5.32 0.00 41.79 4.02
543 548 4.658901 AGATATCAAGGGTGGATTTACCGT 59.341 41.667 5.32 0.00 41.79 4.83
544 549 2.773993 TCAAGGGTGGATTTACCGTC 57.226 50.000 0.00 0.00 41.79 4.79
546 551 2.235402 TCAAGGGTGGATTTACCGTCTC 59.765 50.000 0.00 0.00 41.79 3.36
547 552 2.236395 CAAGGGTGGATTTACCGTCTCT 59.764 50.000 0.00 0.00 41.79 3.10
549 554 3.029570 AGGGTGGATTTACCGTCTCTAC 58.970 50.000 0.00 0.00 41.79 2.59
550 555 2.762327 GGGTGGATTTACCGTCTCTACA 59.238 50.000 0.00 0.00 41.79 2.74
553 558 2.098607 TGGATTTACCGTCTCTACAGCG 59.901 50.000 0.00 0.00 42.61 5.18
554 559 2.098770 GGATTTACCGTCTCTACAGCGT 59.901 50.000 0.00 0.00 0.00 5.07
555 560 2.624316 TTTACCGTCTCTACAGCGTG 57.376 50.000 0.00 0.00 0.00 5.34
556 561 0.169672 TTACCGTCTCTACAGCGTGC 59.830 55.000 0.00 0.00 0.00 5.34
557 562 0.956902 TACCGTCTCTACAGCGTGCA 60.957 55.000 0.00 0.00 0.00 4.57
559 564 1.210413 CGTCTCTACAGCGTGCAGT 59.790 57.895 0.00 0.00 0.00 4.40
561 566 1.080501 TCTCTACAGCGTGCAGTGC 60.081 57.895 8.58 8.58 0.00 4.40
562 567 2.048222 TCTACAGCGTGCAGTGCC 60.048 61.111 13.72 2.92 0.00 5.01
563 568 3.481903 CTACAGCGTGCAGTGCCG 61.482 66.667 13.72 16.36 0.00 5.69
585 590 3.000819 CCACCACAGGGGCGAGTA 61.001 66.667 0.00 0.00 42.05 2.59
586 591 2.579201 CACCACAGGGGCGAGTAG 59.421 66.667 0.00 0.00 42.05 2.57
587 592 2.683933 ACCACAGGGGCGAGTAGG 60.684 66.667 0.00 0.00 42.05 3.18
589 594 2.683933 CACAGGGGCGAGTAGGGT 60.684 66.667 0.00 0.00 0.00 4.34
590 595 1.380785 CACAGGGGCGAGTAGGGTA 60.381 63.158 0.00 0.00 0.00 3.69
591 596 0.974010 CACAGGGGCGAGTAGGGTAA 60.974 60.000 0.00 0.00 0.00 2.85
592 597 0.974525 ACAGGGGCGAGTAGGGTAAC 60.975 60.000 0.00 0.00 0.00 2.50
593 598 0.686769 CAGGGGCGAGTAGGGTAACT 60.687 60.000 0.00 0.00 0.00 2.24
594 599 0.042281 AGGGGCGAGTAGGGTAACTT 59.958 55.000 0.00 0.00 0.00 2.66
595 600 0.463204 GGGGCGAGTAGGGTAACTTC 59.537 60.000 0.00 0.00 0.00 3.01
596 601 0.463204 GGGCGAGTAGGGTAACTTCC 59.537 60.000 0.00 0.00 0.00 3.46
598 603 1.408340 GGCGAGTAGGGTAACTTCCTC 59.592 57.143 0.00 0.00 35.92 3.71
599 604 2.097825 GCGAGTAGGGTAACTTCCTCA 58.902 52.381 0.00 0.00 35.92 3.86
600 605 2.159268 GCGAGTAGGGTAACTTCCTCAC 60.159 54.545 0.00 0.00 35.92 3.51
601 606 2.426381 CGAGTAGGGTAACTTCCTCACC 59.574 54.545 0.00 0.00 35.92 4.02
604 609 1.600638 GGGTAACTTCCTCACCCGG 59.399 63.158 0.00 0.00 42.46 5.73
606 611 0.036671 GGTAACTTCCTCACCCGGTG 60.037 60.000 11.73 11.73 34.45 4.94
607 612 0.036671 GTAACTTCCTCACCCGGTGG 60.037 60.000 17.76 8.23 33.87 4.61
609 614 3.322466 CTTCCTCACCCGGTGGCT 61.322 66.667 17.76 0.00 33.87 4.75
610 615 1.987855 CTTCCTCACCCGGTGGCTA 60.988 63.158 17.76 0.32 33.87 3.93
611 616 1.961180 CTTCCTCACCCGGTGGCTAG 61.961 65.000 17.76 7.68 33.87 3.42
612 617 2.363795 CCTCACCCGGTGGCTAGA 60.364 66.667 17.76 0.00 33.87 2.43
613 618 2.722201 CCTCACCCGGTGGCTAGAC 61.722 68.421 17.76 0.00 33.87 2.59
614 619 1.982395 CTCACCCGGTGGCTAGACA 60.982 63.158 17.76 0.00 33.87 3.41
633 1350 2.829720 ACACGTATCAACCTCAAGCCTA 59.170 45.455 0.00 0.00 0.00 3.93
637 1354 2.969628 ATCAACCTCAAGCCTAGTCG 57.030 50.000 0.00 0.00 0.00 4.18
691 1408 2.270205 CTACCACTGCCAGCCCAG 59.730 66.667 0.00 0.00 38.78 4.45
706 1423 2.281761 CAGGCTTGCCGGAAGTGT 60.282 61.111 5.05 0.00 33.73 3.55
725 1442 3.421888 GTGTCACGTTTCATGTTCAATGC 59.578 43.478 0.00 0.00 0.00 3.56
745 1462 2.726760 GCTGAGCGTCCGATATGTTTAG 59.273 50.000 0.00 0.00 0.00 1.85
748 1465 3.243737 TGAGCGTCCGATATGTTTAGCAT 60.244 43.478 0.00 0.00 41.42 3.79
765 1655 8.247562 TGTTTAGCATGTAATAATTTGACACCC 58.752 33.333 0.00 0.00 0.00 4.61
766 1656 7.946381 TTAGCATGTAATAATTTGACACCCA 57.054 32.000 0.00 0.00 0.00 4.51
767 1657 6.849085 AGCATGTAATAATTTGACACCCAA 57.151 33.333 0.00 0.00 0.00 4.12
768 1658 7.422465 AGCATGTAATAATTTGACACCCAAT 57.578 32.000 0.00 0.00 34.23 3.16
769 1659 8.532186 AGCATGTAATAATTTGACACCCAATA 57.468 30.769 0.00 0.00 34.23 1.90
770 1660 9.146586 AGCATGTAATAATTTGACACCCAATAT 57.853 29.630 0.00 0.00 34.23 1.28
776 1666 8.865590 AATAATTTGACACCCAATATAAACGC 57.134 30.769 0.00 0.00 34.23 4.84
777 1667 5.906113 ATTTGACACCCAATATAAACGCA 57.094 34.783 0.00 0.00 34.23 5.24
778 1668 5.707242 TTTGACACCCAATATAAACGCAA 57.293 34.783 0.00 0.00 34.23 4.85
779 1669 4.688511 TGACACCCAATATAAACGCAAC 57.311 40.909 0.00 0.00 0.00 4.17
842 1848 7.041644 GCCTGATAATAATGTGCATTGCAAAAT 60.042 33.333 13.94 3.43 41.47 1.82
858 1864 3.427503 GCAAAATTAGCGCCTCTAGCAAA 60.428 43.478 2.29 0.00 44.04 3.68
864 1870 6.884280 ATTAGCGCCTCTAGCAAATAATTT 57.116 33.333 2.29 0.00 44.04 1.82
888 1894 5.552870 TTCTAAACATAGCAGGGATCCTC 57.447 43.478 12.58 1.55 0.00 3.71
890 1896 1.051812 AACATAGCAGGGATCCTCGG 58.948 55.000 12.58 3.89 0.00 4.63
891 1897 0.833834 ACATAGCAGGGATCCTCGGG 60.834 60.000 12.58 0.00 0.00 5.14
892 1898 1.915769 ATAGCAGGGATCCTCGGGC 60.916 63.158 12.58 10.23 0.00 6.13
905 1911 5.364157 GGATCCTCGGGCTATAAATATGAGT 59.636 44.000 3.84 0.00 0.00 3.41
912 1918 8.654485 TCGGGCTATAAATATGAGTAGGTTAA 57.346 34.615 0.00 0.00 0.00 2.01
924 1930 3.102204 AGTAGGTTAAGTACGCACCCAT 58.898 45.455 7.36 0.00 0.00 4.00
966 1972 1.454201 TCAAACTTGAACACCACGCA 58.546 45.000 0.00 0.00 33.55 5.24
967 1973 1.131504 TCAAACTTGAACACCACGCAC 59.868 47.619 0.00 0.00 33.55 5.34
968 1974 1.135546 CAAACTTGAACACCACGCACA 60.136 47.619 0.00 0.00 0.00 4.57
970 1976 0.392461 ACTTGAACACCACGCACACT 60.392 50.000 0.00 0.00 0.00 3.55
971 1977 0.732571 CTTGAACACCACGCACACTT 59.267 50.000 0.00 0.00 0.00 3.16
973 1979 0.391793 TGAACACCACGCACACTTGA 60.392 50.000 0.00 0.00 0.00 3.02
974 1980 0.730265 GAACACCACGCACACTTGAA 59.270 50.000 0.00 0.00 0.00 2.69
976 1982 0.107897 ACACCACGCACACTTGAAGA 60.108 50.000 0.00 0.00 0.00 2.87
977 1983 0.583438 CACCACGCACACTTGAAGAG 59.417 55.000 0.00 0.00 0.00 2.85
978 1984 0.464036 ACCACGCACACTTGAAGAGA 59.536 50.000 0.00 0.00 0.00 3.10
979 1985 1.070758 ACCACGCACACTTGAAGAGAT 59.929 47.619 0.00 0.00 0.00 2.75
980 1986 2.146342 CCACGCACACTTGAAGAGATT 58.854 47.619 0.00 0.00 0.00 2.40
981 1987 2.096069 CCACGCACACTTGAAGAGATTG 60.096 50.000 0.00 0.00 0.00 2.67
982 1988 2.545526 CACGCACACTTGAAGAGATTGT 59.454 45.455 0.00 0.00 0.00 2.71
983 1989 3.002656 CACGCACACTTGAAGAGATTGTT 59.997 43.478 0.00 0.00 0.00 2.83
984 1990 4.211164 CACGCACACTTGAAGAGATTGTTA 59.789 41.667 0.00 0.00 0.00 2.41
985 1991 4.997395 ACGCACACTTGAAGAGATTGTTAT 59.003 37.500 0.00 0.00 0.00 1.89
986 1992 5.120830 ACGCACACTTGAAGAGATTGTTATC 59.879 40.000 0.00 0.00 0.00 1.75
987 1993 5.446473 CGCACACTTGAAGAGATTGTTATCC 60.446 44.000 0.00 0.00 0.00 2.59
988 1994 5.163713 GCACACTTGAAGAGATTGTTATCCC 60.164 44.000 0.00 0.00 0.00 3.85
989 1995 5.939883 CACACTTGAAGAGATTGTTATCCCA 59.060 40.000 0.00 0.00 0.00 4.37
990 1996 5.940470 ACACTTGAAGAGATTGTTATCCCAC 59.060 40.000 0.00 0.00 0.00 4.61
991 1997 5.063944 CACTTGAAGAGATTGTTATCCCACG 59.936 44.000 0.00 0.00 0.00 4.94
1011 2017 1.095228 AGAACAATATGGCCGGTGCG 61.095 55.000 1.90 0.00 38.85 5.34
1012 2018 1.078072 AACAATATGGCCGGTGCGA 60.078 52.632 1.90 0.00 38.85 5.10
1014 2020 1.523711 CAATATGGCCGGTGCGAGT 60.524 57.895 1.90 0.00 38.85 4.18
1024 2030 0.511221 CGGTGCGAGTGGTTTAGTTG 59.489 55.000 0.00 0.00 0.00 3.16
1026 2032 1.226746 GTGCGAGTGGTTTAGTTGCT 58.773 50.000 0.00 0.00 39.48 3.91
1033 2039 5.205565 CGAGTGGTTTAGTTGCTTTTCTTC 58.794 41.667 0.00 0.00 0.00 2.87
1036 2042 6.796426 AGTGGTTTAGTTGCTTTTCTTCTTC 58.204 36.000 0.00 0.00 0.00 2.87
1056 2062 7.060383 TCTTCTTTCATCCATGATAGTCTCC 57.940 40.000 0.00 0.00 37.23 3.71
1082 2088 6.128526 GCAGGTAGAGTTACATTCACTTGTTC 60.129 42.308 0.00 0.00 0.00 3.18
1086 2092 7.544915 GGTAGAGTTACATTCACTTGTTCTACC 59.455 40.741 13.83 13.83 43.45 3.18
1087 2093 6.157211 AGAGTTACATTCACTTGTTCTACCG 58.843 40.000 0.00 0.00 0.00 4.02
1088 2094 5.235516 AGTTACATTCACTTGTTCTACCGG 58.764 41.667 0.00 0.00 0.00 5.28
1089 2095 2.423577 ACATTCACTTGTTCTACCGGC 58.576 47.619 0.00 0.00 0.00 6.13
1090 2096 1.737793 CATTCACTTGTTCTACCGGCC 59.262 52.381 0.00 0.00 0.00 6.13
1092 2098 0.606604 TCACTTGTTCTACCGGCCTC 59.393 55.000 0.00 0.00 0.00 4.70
1093 2099 0.608640 CACTTGTTCTACCGGCCTCT 59.391 55.000 0.00 0.00 0.00 3.69
1094 2100 1.002087 CACTTGTTCTACCGGCCTCTT 59.998 52.381 0.00 0.00 0.00 2.85
1095 2101 1.275573 ACTTGTTCTACCGGCCTCTTC 59.724 52.381 0.00 0.00 0.00 2.87
1097 2103 0.609957 TGTTCTACCGGCCTCTTCGA 60.610 55.000 0.00 0.00 0.00 3.71
1098 2104 0.745468 GTTCTACCGGCCTCTTCGAT 59.255 55.000 0.00 0.00 0.00 3.59
1099 2105 0.744874 TTCTACCGGCCTCTTCGATG 59.255 55.000 0.00 0.00 0.00 3.84
1100 2106 1.300233 CTACCGGCCTCTTCGATGC 60.300 63.158 0.00 0.00 0.00 3.91
1101 2107 2.016393 CTACCGGCCTCTTCGATGCA 62.016 60.000 0.00 0.00 0.00 3.96
1102 2108 1.609635 TACCGGCCTCTTCGATGCAA 61.610 55.000 0.00 0.00 0.00 4.08
1103 2109 2.176273 CCGGCCTCTTCGATGCAAG 61.176 63.158 0.00 0.00 0.00 4.01
1104 2110 2.817423 CGGCCTCTTCGATGCAAGC 61.817 63.158 0.00 0.00 0.00 4.01
1105 2111 1.451028 GGCCTCTTCGATGCAAGCT 60.451 57.895 0.00 0.00 0.00 3.74
1106 2112 1.028868 GGCCTCTTCGATGCAAGCTT 61.029 55.000 0.00 0.00 0.00 3.74
1107 2113 0.807496 GCCTCTTCGATGCAAGCTTT 59.193 50.000 0.00 0.00 0.00 3.51
1128 2134 8.920174 AGCTTTATGATGATGATGGAATTTCAA 58.080 29.630 0.00 0.00 0.00 2.69
1195 2206 9.952188 TTGTCATGTATTTTATCTAGAGAGACG 57.048 33.333 0.00 0.00 33.41 4.18
1196 2207 8.076781 TGTCATGTATTTTATCTAGAGAGACGC 58.923 37.037 0.00 0.00 33.41 5.19
1199 2210 5.761726 TGTATTTTATCTAGAGAGACGCCGA 59.238 40.000 0.00 0.00 33.41 5.54
1200 2211 5.968528 ATTTTATCTAGAGAGACGCCGAT 57.031 39.130 0.00 0.00 33.41 4.18
1201 2212 4.750952 TTTATCTAGAGAGACGCCGATG 57.249 45.455 0.00 0.00 33.41 3.84
1203 2214 1.584175 TCTAGAGAGACGCCGATGAC 58.416 55.000 0.00 0.00 0.00 3.06
1213 2224 1.723003 ACGCCGATGACGTTTACTTTC 59.277 47.619 0.00 0.00 41.93 2.62
1214 2225 1.990563 CGCCGATGACGTTTACTTTCT 59.009 47.619 0.00 0.00 37.88 2.52
1219 2230 4.863131 CCGATGACGTTTACTTTCTAAGCT 59.137 41.667 0.00 0.00 37.88 3.74
1222 2233 7.288672 CGATGACGTTTACTTTCTAAGCTTTT 58.711 34.615 3.20 0.00 34.56 2.27
1264 2275 7.804843 TTGTTAAAATTTGAAGGTACTCCGA 57.195 32.000 0.00 0.00 38.49 4.55
1266 2277 9.504708 TTGTTAAAATTTGAAGGTACTCCGATA 57.495 29.630 0.00 0.00 38.49 2.92
1267 2278 9.504708 TGTTAAAATTTGAAGGTACTCCGATAA 57.495 29.630 0.00 0.00 38.49 1.75
1275 2286 8.857694 TTGAAGGTACTCCGATAAAATTTTCT 57.142 30.769 6.72 0.00 38.49 2.52
1276 2287 8.857694 TGAAGGTACTCCGATAAAATTTTCTT 57.142 30.769 6.72 0.53 38.49 2.52
1277 2288 8.943002 TGAAGGTACTCCGATAAAATTTTCTTC 58.057 33.333 6.72 9.98 38.49 2.87
1278 2289 8.857694 AAGGTACTCCGATAAAATTTTCTTCA 57.142 30.769 6.72 0.00 38.49 3.02
1279 2290 9.462606 AAGGTACTCCGATAAAATTTTCTTCAT 57.537 29.630 6.72 0.00 38.49 2.57
1287 2298 8.788813 CCGATAAAATTTTCTTCATATATGCGC 58.211 33.333 6.72 0.00 0.00 6.09
1288 2299 8.788813 CGATAAAATTTTCTTCATATATGCGCC 58.211 33.333 6.72 0.00 0.00 6.53
1289 2300 9.846248 GATAAAATTTTCTTCATATATGCGCCT 57.154 29.630 6.72 0.00 0.00 5.52
1291 2302 8.579682 AAAATTTTCTTCATATATGCGCCTTC 57.420 30.769 4.18 0.00 0.00 3.46
1292 2303 6.882610 ATTTTCTTCATATATGCGCCTTCA 57.117 33.333 4.18 0.00 0.00 3.02
1293 2304 5.673337 TTTCTTCATATATGCGCCTTCAC 57.327 39.130 4.18 0.00 0.00 3.18
1351 2362 6.698008 AGATGTGGCGAATATTTTCATTCA 57.302 33.333 0.00 0.00 35.09 2.57
1382 2393 0.179089 CGACTCCTGCATTCCTCCTG 60.179 60.000 0.00 0.00 0.00 3.86
1390 2401 3.958798 CCTGCATTCCTCCTGAAAATGAT 59.041 43.478 0.00 0.00 36.33 2.45
1411 2422 0.952497 AGTGCGACTCATGGTGCAAG 60.952 55.000 0.00 0.00 35.19 4.01
1431 2442 1.274703 AATCGATGTGCCAGAGGGGT 61.275 55.000 0.00 0.00 39.65 4.95
1482 2493 6.403866 TTGCCATTGTTACAAGAACTGAAT 57.596 33.333 3.63 0.00 0.00 2.57
1584 2595 3.876309 AAAAAGGACCTGGTAGCTTCA 57.124 42.857 0.00 0.00 0.00 3.02
1623 2641 3.196469 TCATCTCACCATCACCTCTTCAC 59.804 47.826 0.00 0.00 0.00 3.18
1624 2642 1.546029 TCTCACCATCACCTCTTCACG 59.454 52.381 0.00 0.00 0.00 4.35
1660 2679 9.374711 TCACCTTCCCAATAAAAACTTTTCTAT 57.625 29.630 0.00 0.00 0.00 1.98
1680 2699 8.992835 TTCTATCCTTTCTAAACGTTCCTAAC 57.007 34.615 0.00 0.00 0.00 2.34
1681 2700 7.550712 TCTATCCTTTCTAAACGTTCCTAACC 58.449 38.462 0.00 0.00 0.00 2.85
1682 2701 5.549742 TCCTTTCTAAACGTTCCTAACCA 57.450 39.130 0.00 0.00 0.00 3.67
1685 2704 5.049198 CCTTTCTAAACGTTCCTAACCAACC 60.049 44.000 0.00 0.00 0.00 3.77
1686 2705 4.686191 TCTAAACGTTCCTAACCAACCA 57.314 40.909 0.00 0.00 0.00 3.67
1687 2706 4.379652 TCTAAACGTTCCTAACCAACCAC 58.620 43.478 0.00 0.00 0.00 4.16
1688 2707 1.585297 AACGTTCCTAACCAACCACG 58.415 50.000 0.00 0.00 0.00 4.94
1689 2708 0.465287 ACGTTCCTAACCAACCACGT 59.535 50.000 0.00 0.00 36.10 4.49
1690 2709 1.134431 ACGTTCCTAACCAACCACGTT 60.134 47.619 0.00 0.00 37.59 3.99
1691 2710 2.102252 ACGTTCCTAACCAACCACGTTA 59.898 45.455 0.00 0.00 37.59 3.18
1692 2711 2.476241 CGTTCCTAACCAACCACGTTAC 59.524 50.000 0.00 0.00 0.00 2.50
1693 2712 3.465871 GTTCCTAACCAACCACGTTACA 58.534 45.455 0.00 0.00 0.00 2.41
1694 2713 3.834489 TCCTAACCAACCACGTTACAA 57.166 42.857 0.00 0.00 0.00 2.41
1695 2714 4.148128 TCCTAACCAACCACGTTACAAA 57.852 40.909 0.00 0.00 0.00 2.83
1696 2715 4.716794 TCCTAACCAACCACGTTACAAAT 58.283 39.130 0.00 0.00 0.00 2.32
1697 2716 5.131784 TCCTAACCAACCACGTTACAAATT 58.868 37.500 0.00 0.00 0.00 1.82
1698 2717 5.008811 TCCTAACCAACCACGTTACAAATTG 59.991 40.000 0.00 0.00 0.00 2.32
1699 2718 3.719173 ACCAACCACGTTACAAATTGG 57.281 42.857 0.00 0.00 41.92 3.16
1700 2719 2.223852 ACCAACCACGTTACAAATTGGC 60.224 45.455 0.00 0.00 40.23 4.52
1701 2720 2.223829 CCAACCACGTTACAAATTGGCA 60.224 45.455 0.00 0.00 30.94 4.92
1702 2721 3.049206 CAACCACGTTACAAATTGGCAG 58.951 45.455 0.00 0.00 31.76 4.85
1703 2722 1.611491 ACCACGTTACAAATTGGCAGG 59.389 47.619 0.00 0.00 31.76 4.85
1704 2723 1.883275 CCACGTTACAAATTGGCAGGA 59.117 47.619 0.00 0.00 0.00 3.86
1705 2724 2.294791 CCACGTTACAAATTGGCAGGAA 59.705 45.455 0.00 0.00 0.00 3.36
1706 2725 3.305110 CACGTTACAAATTGGCAGGAAC 58.695 45.455 0.00 0.00 0.00 3.62
1707 2726 2.295070 ACGTTACAAATTGGCAGGAACC 59.705 45.455 0.00 0.00 0.00 3.62
1708 2727 2.667171 CGTTACAAATTGGCAGGAACCG 60.667 50.000 0.00 0.00 0.00 4.44
1709 2728 2.554893 GTTACAAATTGGCAGGAACCGA 59.445 45.455 0.00 0.00 0.00 4.69
1710 2729 1.923356 ACAAATTGGCAGGAACCGAT 58.077 45.000 0.00 0.00 35.11 4.18
1711 2730 3.080300 ACAAATTGGCAGGAACCGATA 57.920 42.857 0.00 0.00 32.18 2.92
1712 2731 3.016736 ACAAATTGGCAGGAACCGATAG 58.983 45.455 0.00 0.00 32.18 2.08
1713 2732 1.680338 AATTGGCAGGAACCGATAGC 58.320 50.000 0.00 0.00 32.18 2.97
1714 2733 0.546122 ATTGGCAGGAACCGATAGCA 59.454 50.000 0.00 0.00 31.55 3.49
1715 2734 0.392461 TTGGCAGGAACCGATAGCAC 60.392 55.000 0.00 0.00 0.00 4.40
1716 2735 1.883084 GGCAGGAACCGATAGCACG 60.883 63.158 0.00 0.00 0.00 5.34
1721 2740 2.601763 CAGGAACCGATAGCACGTTTAC 59.398 50.000 0.00 0.00 0.00 2.01
1728 2747 3.241552 CCGATAGCACGTTTACGAAACAG 60.242 47.826 9.53 0.00 41.44 3.16
1732 2751 2.931325 AGCACGTTTACGAAACAGTGAA 59.069 40.909 22.55 0.00 42.69 3.18
1738 2757 5.064962 ACGTTTACGAAACAGTGAAATCCAA 59.935 36.000 9.53 0.00 41.44 3.53
1742 2761 7.922505 TTACGAAACAGTGAAATCCAATTTG 57.077 32.000 0.00 0.00 31.47 2.32
1743 2762 5.901552 ACGAAACAGTGAAATCCAATTTGT 58.098 33.333 0.00 0.00 31.47 2.83
1756 2775 6.746745 ATCCAATTTGTTGGCAATCAATTC 57.253 33.333 1.92 0.00 41.81 2.17
1762 2781 8.512956 CAATTTGTTGGCAATCAATTCCAAATA 58.487 29.630 17.54 3.75 41.05 1.40
1785 2804 5.930135 ACTAACTTCCCTATTGCATCGATT 58.070 37.500 0.00 0.00 0.00 3.34
1790 2809 1.808945 CCCTATTGCATCGATTCCTGC 59.191 52.381 0.00 0.00 38.87 4.85
1796 2815 1.745087 TGCATCGATTCCTGCTTTTCC 59.255 47.619 9.89 0.00 39.16 3.13
1797 2816 2.019984 GCATCGATTCCTGCTTTTCCT 58.980 47.619 0.00 0.00 35.49 3.36
1999 3018 7.322664 AGGTCGTAATTTCCTTACACGAAATA 58.677 34.615 0.00 0.00 42.57 1.40
2191 3217 5.241728 GCAACTCTGTTAGTCCCAAAATTCT 59.758 40.000 0.00 0.00 37.50 2.40
2192 3218 6.672147 CAACTCTGTTAGTCCCAAAATTCTG 58.328 40.000 0.00 0.00 37.50 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.216940 TCATCGACGACGTTTGTTGTTC 59.783 45.455 0.13 0.00 42.93 3.18
5 6 2.031420 TCTCTTCATCGACGACGTTTGT 60.031 45.455 0.13 0.00 40.69 2.83
9 10 1.466024 GCTTCTCTTCATCGACGACGT 60.466 52.381 0.00 0.00 40.69 4.34
15 16 4.464947 TGATCTAGGCTTCTCTTCATCGA 58.535 43.478 0.00 0.00 0.00 3.59
23 24 4.202212 GGAACCTTCTGATCTAGGCTTCTC 60.202 50.000 0.00 0.00 34.79 2.87
30 31 4.100189 ACGGATTGGAACCTTCTGATCTAG 59.900 45.833 0.00 0.00 0.00 2.43
37 38 3.056035 GTGTCTACGGATTGGAACCTTCT 60.056 47.826 0.00 0.00 0.00 2.85
65 66 4.563976 GGATTTGGTCTTCATTCATTTGCG 59.436 41.667 0.00 0.00 0.00 4.85
69 70 6.351541 CCACATGGATTTGGTCTTCATTCATT 60.352 38.462 0.00 0.00 37.39 2.57
71 72 4.463539 CCACATGGATTTGGTCTTCATTCA 59.536 41.667 0.00 0.00 37.39 2.57
92 93 2.428890 GTGTTTGTGTTTGGTGGATCCA 59.571 45.455 11.44 11.44 45.60 3.41
101 102 3.479505 TTCAGTCGGTGTTTGTGTTTG 57.520 42.857 0.00 0.00 0.00 2.93
105 106 2.616376 TGGAATTCAGTCGGTGTTTGTG 59.384 45.455 7.93 0.00 0.00 3.33
118 119 3.647590 TCCGATGGATCTCATGGAATTCA 59.352 43.478 7.93 0.00 35.97 2.57
119 120 4.020751 TCTCCGATGGATCTCATGGAATTC 60.021 45.833 0.00 0.00 35.97 2.17
123 124 2.242926 GTCTCCGATGGATCTCATGGA 58.757 52.381 7.45 9.64 35.97 3.41
125 126 2.363359 TGTGTCTCCGATGGATCTCATG 59.637 50.000 1.91 0.00 35.97 3.07
135 136 1.883732 CGTGAGGTGTGTCTCCGAT 59.116 57.895 0.00 0.00 32.89 4.18
137 138 2.430921 GCGTGAGGTGTGTCTCCG 60.431 66.667 0.00 0.00 33.04 4.63
142 143 3.626924 GGAGGGCGTGAGGTGTGT 61.627 66.667 0.00 0.00 0.00 3.72
159 163 2.152699 GGTGCGTCAGACATCGTCG 61.153 63.158 0.41 0.00 37.67 5.12
163 167 2.094659 CGGTGGTGCGTCAGACATC 61.095 63.158 0.41 0.00 0.00 3.06
167 171 2.596338 TCTCGGTGGTGCGTCAGA 60.596 61.111 0.00 0.00 0.00 3.27
168 172 2.430921 GTCTCGGTGGTGCGTCAG 60.431 66.667 0.00 0.00 0.00 3.51
176 180 0.394488 TCTAGCCTCTGTCTCGGTGG 60.394 60.000 0.00 0.00 0.00 4.61
178 182 2.217510 TTTCTAGCCTCTGTCTCGGT 57.782 50.000 0.00 0.00 0.00 4.69
179 183 2.159170 CCTTTTCTAGCCTCTGTCTCGG 60.159 54.545 0.00 0.00 0.00 4.63
182 186 5.309638 GTTTTCCTTTTCTAGCCTCTGTCT 58.690 41.667 0.00 0.00 0.00 3.41
202 206 7.126421 TGCCTCTCTGAAGATAGAATAAGGTTT 59.874 37.037 0.00 0.00 0.00 3.27
229 233 3.382832 AGGAAGGTGAGGCGACGG 61.383 66.667 0.00 0.00 0.00 4.79
247 251 3.804873 CGCTTAAGGTTTCTATCCTGCTC 59.195 47.826 4.29 0.00 35.27 4.26
250 254 5.420409 AGTTCGCTTAAGGTTTCTATCCTG 58.580 41.667 4.29 0.00 35.27 3.86
255 259 6.987992 TCTTTTGAGTTCGCTTAAGGTTTCTA 59.012 34.615 4.29 0.00 0.00 2.10
257 261 6.056428 TCTTTTGAGTTCGCTTAAGGTTTC 57.944 37.500 4.29 0.00 0.00 2.78
267 271 0.586802 AGGCGTTCTTTTGAGTTCGC 59.413 50.000 0.00 0.00 40.79 4.70
269 273 7.694388 AATTTTTAGGCGTTCTTTTGAGTTC 57.306 32.000 0.00 0.00 0.00 3.01
270 274 9.244799 CTTAATTTTTAGGCGTTCTTTTGAGTT 57.755 29.630 0.00 0.00 0.00 3.01
275 279 8.853126 ACCTACTTAATTTTTAGGCGTTCTTTT 58.147 29.630 6.61 0.00 36.57 2.27
319 323 2.109181 GTGCGGTAGATCCTGGCC 59.891 66.667 0.00 0.00 0.00 5.36
322 326 1.043116 TGGAGGTGCGGTAGATCCTG 61.043 60.000 0.00 0.00 0.00 3.86
323 327 0.105453 ATGGAGGTGCGGTAGATCCT 60.105 55.000 0.00 0.00 0.00 3.24
329 333 0.106167 AGAGCTATGGAGGTGCGGTA 60.106 55.000 0.00 0.00 32.11 4.02
335 339 1.062121 TGGCCTTAGAGCTATGGAGGT 60.062 52.381 3.32 0.00 33.55 3.85
336 340 1.346068 GTGGCCTTAGAGCTATGGAGG 59.654 57.143 3.32 7.92 33.55 4.30
339 343 1.071385 CCTGTGGCCTTAGAGCTATGG 59.929 57.143 3.32 5.35 34.51 2.74
343 347 0.041833 TCTCCTGTGGCCTTAGAGCT 59.958 55.000 3.32 0.00 0.00 4.09
346 350 0.039180 TCGTCTCCTGTGGCCTTAGA 59.961 55.000 3.32 0.00 0.00 2.10
375 379 4.849310 TCCCATTACCAGCGCCGC 62.849 66.667 2.29 0.00 0.00 6.53
382 386 1.659022 TTTCCCGTCTCCCATTACCA 58.341 50.000 0.00 0.00 0.00 3.25
383 387 2.362736 GTTTTCCCGTCTCCCATTACC 58.637 52.381 0.00 0.00 0.00 2.85
384 388 2.362736 GGTTTTCCCGTCTCCCATTAC 58.637 52.381 0.00 0.00 0.00 1.89
385 389 2.793288 GGTTTTCCCGTCTCCCATTA 57.207 50.000 0.00 0.00 0.00 1.90
386 390 3.664240 GGTTTTCCCGTCTCCCATT 57.336 52.632 0.00 0.00 0.00 3.16
397 401 1.017701 CCACGCGTCTAGGGTTTTCC 61.018 60.000 9.86 0.00 44.10 3.13
412 416 0.303493 CCACACGAACAACTTCCACG 59.697 55.000 0.00 0.00 0.00 4.94
417 421 1.208535 TCCTCACCACACGAACAACTT 59.791 47.619 0.00 0.00 0.00 2.66
421 425 1.116308 TTCTCCTCACCACACGAACA 58.884 50.000 0.00 0.00 0.00 3.18
425 429 2.285083 TGTTTTTCTCCTCACCACACG 58.715 47.619 0.00 0.00 0.00 4.49
426 430 3.632145 ACATGTTTTTCTCCTCACCACAC 59.368 43.478 0.00 0.00 0.00 3.82
432 436 6.773976 AAGTTGAACATGTTTTTCTCCTCA 57.226 33.333 13.36 0.09 0.00 3.86
481 485 9.733556 ACAAGACCAAAATATGTTAGTCATGTA 57.266 29.630 11.72 0.00 35.24 2.29
482 486 8.635765 ACAAGACCAAAATATGTTAGTCATGT 57.364 30.769 8.64 8.64 37.91 3.21
483 487 9.345517 CAACAAGACCAAAATATGTTAGTCATG 57.654 33.333 6.92 7.27 37.91 3.07
520 525 4.658901 ACGGTAAATCCACCCTTGATATCT 59.341 41.667 3.98 0.00 34.90 1.98
528 533 2.249309 AGAGACGGTAAATCCACCCT 57.751 50.000 0.00 0.00 34.90 4.34
529 534 2.762327 TGTAGAGACGGTAAATCCACCC 59.238 50.000 0.00 0.00 34.90 4.61
530 535 3.737355 GCTGTAGAGACGGTAAATCCACC 60.737 52.174 0.00 0.00 34.09 4.61
532 537 2.098607 CGCTGTAGAGACGGTAAATCCA 59.901 50.000 0.00 0.00 34.09 3.41
533 538 2.098770 ACGCTGTAGAGACGGTAAATCC 59.901 50.000 8.18 0.00 34.09 3.01
534 539 3.106672 CACGCTGTAGAGACGGTAAATC 58.893 50.000 8.18 0.00 34.09 2.17
536 541 1.401931 GCACGCTGTAGAGACGGTAAA 60.402 52.381 8.18 0.00 34.09 2.01
537 542 0.169672 GCACGCTGTAGAGACGGTAA 59.830 55.000 8.18 0.00 34.09 2.85
538 543 0.956902 TGCACGCTGTAGAGACGGTA 60.957 55.000 8.18 0.00 34.09 4.02
539 544 2.201436 CTGCACGCTGTAGAGACGGT 62.201 60.000 8.18 0.00 31.36 4.83
540 545 1.515088 CTGCACGCTGTAGAGACGG 60.515 63.158 8.18 0.00 31.36 4.79
541 546 1.067743 CACTGCACGCTGTAGAGACG 61.068 60.000 9.33 0.00 34.09 4.18
542 547 1.347817 GCACTGCACGCTGTAGAGAC 61.348 60.000 9.33 0.00 34.09 3.36
543 548 1.080501 GCACTGCACGCTGTAGAGA 60.081 57.895 9.33 0.00 34.09 3.10
544 549 2.097038 GGCACTGCACGCTGTAGAG 61.097 63.158 2.82 3.97 34.09 2.43
546 551 3.481903 CGGCACTGCACGCTGTAG 61.482 66.667 2.82 2.56 36.12 2.74
568 573 3.000819 TACTCGCCCCTGTGGTGG 61.001 66.667 0.00 0.00 45.26 4.61
569 574 2.579201 CTACTCGCCCCTGTGGTG 59.421 66.667 0.00 0.00 46.66 4.17
571 576 2.866523 TACCCTACTCGCCCCTGTGG 62.867 65.000 0.00 0.00 37.09 4.17
572 577 0.974010 TTACCCTACTCGCCCCTGTG 60.974 60.000 0.00 0.00 0.00 3.66
574 579 0.686769 AGTTACCCTACTCGCCCCTG 60.687 60.000 0.00 0.00 0.00 4.45
575 580 0.042281 AAGTTACCCTACTCGCCCCT 59.958 55.000 0.00 0.00 0.00 4.79
576 581 0.463204 GAAGTTACCCTACTCGCCCC 59.537 60.000 0.00 0.00 0.00 5.80
577 582 0.463204 GGAAGTTACCCTACTCGCCC 59.537 60.000 0.00 0.00 0.00 6.13
578 583 1.408340 GAGGAAGTTACCCTACTCGCC 59.592 57.143 0.00 0.00 33.36 5.54
579 584 2.097825 TGAGGAAGTTACCCTACTCGC 58.902 52.381 0.00 0.00 33.36 5.03
580 585 2.426381 GGTGAGGAAGTTACCCTACTCG 59.574 54.545 0.00 0.00 33.36 4.18
587 592 0.036671 CACCGGGTGAGGAAGTTACC 60.037 60.000 22.77 0.00 35.23 2.85
589 594 1.833787 GCCACCGGGTGAGGAAGTTA 61.834 60.000 28.36 0.00 35.23 2.24
590 595 3.157680 CCACCGGGTGAGGAAGTT 58.842 61.111 28.36 0.00 35.23 2.66
591 596 2.741878 TAGCCACCGGGTGAGGAAGT 62.742 60.000 28.36 8.19 35.23 3.01
592 597 1.961180 CTAGCCACCGGGTGAGGAAG 61.961 65.000 28.36 14.95 35.23 3.46
593 598 1.987855 CTAGCCACCGGGTGAGGAA 60.988 63.158 28.36 9.63 35.23 3.36
594 599 2.363795 CTAGCCACCGGGTGAGGA 60.364 66.667 28.36 11.19 35.23 3.71
595 600 2.363795 TCTAGCCACCGGGTGAGG 60.364 66.667 28.36 13.90 35.23 3.86
596 601 1.982395 TGTCTAGCCACCGGGTGAG 60.982 63.158 28.36 17.30 35.23 3.51
598 603 2.264794 GTGTCTAGCCACCGGGTG 59.735 66.667 20.41 20.41 34.28 4.61
599 604 2.769652 TACGTGTCTAGCCACCGGGT 62.770 60.000 6.32 0.00 37.19 5.28
600 605 1.389609 ATACGTGTCTAGCCACCGGG 61.390 60.000 6.32 0.00 31.47 5.73
601 606 0.030369 GATACGTGTCTAGCCACCGG 59.970 60.000 0.00 0.00 31.47 5.28
602 607 0.736636 TGATACGTGTCTAGCCACCG 59.263 55.000 13.73 0.00 31.47 4.94
603 608 2.537401 GTTGATACGTGTCTAGCCACC 58.463 52.381 13.73 0.00 31.47 4.61
604 609 2.165845 AGGTTGATACGTGTCTAGCCAC 59.834 50.000 18.75 0.00 0.00 5.01
606 611 2.426024 TGAGGTTGATACGTGTCTAGCC 59.574 50.000 18.75 14.43 0.00 3.93
607 612 3.777465 TGAGGTTGATACGTGTCTAGC 57.223 47.619 15.72 15.72 0.00 3.42
609 614 3.119245 GGCTTGAGGTTGATACGTGTCTA 60.119 47.826 13.73 2.90 0.00 2.59
610 615 2.353803 GGCTTGAGGTTGATACGTGTCT 60.354 50.000 13.73 0.00 0.00 3.41
611 616 2.000447 GGCTTGAGGTTGATACGTGTC 59.000 52.381 5.21 5.21 0.00 3.67
612 617 1.623811 AGGCTTGAGGTTGATACGTGT 59.376 47.619 0.00 0.00 0.00 4.49
613 618 2.386661 AGGCTTGAGGTTGATACGTG 57.613 50.000 0.00 0.00 0.00 4.49
614 619 3.097614 ACTAGGCTTGAGGTTGATACGT 58.902 45.455 2.20 0.00 0.00 3.57
670 1387 2.269241 GCTGGCAGTGGTAGACCC 59.731 66.667 17.16 0.00 34.29 4.46
675 1392 3.329889 CCTGGGCTGGCAGTGGTA 61.330 66.667 17.16 0.00 0.00 3.25
691 1408 2.281484 TGACACTTCCGGCAAGCC 60.281 61.111 11.97 0.00 35.17 4.35
706 1423 3.563390 TCAGCATTGAACATGAAACGTGA 59.437 39.130 0.00 0.00 0.00 4.35
725 1442 2.726760 GCTAAACATATCGGACGCTCAG 59.273 50.000 0.00 0.00 0.00 3.35
757 1647 4.082679 GGTTGCGTTTATATTGGGTGTCAA 60.083 41.667 0.00 0.00 40.01 3.18
759 1649 3.440872 TGGTTGCGTTTATATTGGGTGTC 59.559 43.478 0.00 0.00 0.00 3.67
778 1668 9.402320 TATATGTTAATATGCGCCAATTATGGT 57.598 29.630 4.18 1.22 38.25 3.55
813 1819 5.736777 GCAATGCACATTATTATCAGGCACA 60.737 40.000 0.00 0.00 32.04 4.57
814 1820 4.682860 GCAATGCACATTATTATCAGGCAC 59.317 41.667 0.00 0.00 32.04 5.01
816 1822 4.873817 TGCAATGCACATTATTATCAGGC 58.126 39.130 2.72 0.00 31.71 4.85
823 1829 6.707711 CGCTAATTTTGCAATGCACATTATT 58.292 32.000 7.72 7.84 38.71 1.40
825 1831 4.032672 GCGCTAATTTTGCAATGCACATTA 59.967 37.500 7.72 12.44 38.71 1.90
826 1832 3.181518 GCGCTAATTTTGCAATGCACATT 60.182 39.130 7.72 11.94 38.71 2.71
828 1834 1.725706 GCGCTAATTTTGCAATGCACA 59.274 42.857 7.72 0.00 38.71 4.57
842 1848 7.979444 ATAAATTATTTGCTAGAGGCGCTAA 57.021 32.000 7.64 0.00 45.43 3.09
844 1850 6.712547 AGAATAAATTATTTGCTAGAGGCGCT 59.287 34.615 7.64 0.00 45.43 5.92
864 1870 6.071334 CGAGGATCCCTGCTATGTTTAGAATA 60.071 42.308 8.55 0.00 31.76 1.75
873 1879 1.978473 CCCGAGGATCCCTGCTATG 59.022 63.158 8.55 0.00 31.76 2.23
883 1889 6.551601 CCTACTCATATTTATAGCCCGAGGAT 59.448 42.308 0.00 0.00 0.00 3.24
888 1894 8.529476 ACTTAACCTACTCATATTTATAGCCCG 58.471 37.037 0.00 0.00 0.00 6.13
905 1911 2.419021 GCATGGGTGCGTACTTAACCTA 60.419 50.000 3.01 3.51 42.28 3.08
962 1968 2.838736 ACAATCTCTTCAAGTGTGCGT 58.161 42.857 0.00 0.00 0.00 5.24
963 1969 3.885484 AACAATCTCTTCAAGTGTGCG 57.115 42.857 0.00 0.00 0.00 5.34
964 1970 5.163713 GGGATAACAATCTCTTCAAGTGTGC 60.164 44.000 0.00 0.00 0.00 4.57
966 1972 5.940470 GTGGGATAACAATCTCTTCAAGTGT 59.060 40.000 0.00 0.00 0.00 3.55
967 1973 5.063944 CGTGGGATAACAATCTCTTCAAGTG 59.936 44.000 0.00 0.00 0.00 3.16
968 1974 5.046591 TCGTGGGATAACAATCTCTTCAAGT 60.047 40.000 0.00 0.00 0.00 3.16
970 1976 5.186992 TCTCGTGGGATAACAATCTCTTCAA 59.813 40.000 0.00 0.00 0.00 2.69
971 1977 4.709886 TCTCGTGGGATAACAATCTCTTCA 59.290 41.667 0.00 0.00 0.00 3.02
973 1979 5.046591 TGTTCTCGTGGGATAACAATCTCTT 60.047 40.000 0.00 0.00 36.62 2.85
974 1980 4.466370 TGTTCTCGTGGGATAACAATCTCT 59.534 41.667 0.00 0.00 36.62 3.10
976 1982 4.819105 TGTTCTCGTGGGATAACAATCT 57.181 40.909 0.00 0.00 36.62 2.40
979 1985 5.820423 CCATATTGTTCTCGTGGGATAACAA 59.180 40.000 9.28 9.28 46.55 2.83
980 1986 5.364778 CCATATTGTTCTCGTGGGATAACA 58.635 41.667 0.00 0.00 37.45 2.41
981 1987 4.213482 GCCATATTGTTCTCGTGGGATAAC 59.787 45.833 0.00 0.00 31.78 1.89
982 1988 4.385825 GCCATATTGTTCTCGTGGGATAA 58.614 43.478 0.00 0.00 0.00 1.75
983 1989 3.244422 GGCCATATTGTTCTCGTGGGATA 60.244 47.826 0.00 0.00 0.00 2.59
984 1990 2.487265 GGCCATATTGTTCTCGTGGGAT 60.487 50.000 0.00 0.00 0.00 3.85
985 1991 1.134220 GGCCATATTGTTCTCGTGGGA 60.134 52.381 0.00 0.00 0.00 4.37
986 1992 1.308998 GGCCATATTGTTCTCGTGGG 58.691 55.000 0.00 0.00 0.00 4.61
987 1993 0.937304 CGGCCATATTGTTCTCGTGG 59.063 55.000 2.24 0.00 0.00 4.94
988 1994 0.937304 CCGGCCATATTGTTCTCGTG 59.063 55.000 2.24 0.00 0.00 4.35
989 1995 0.539986 ACCGGCCATATTGTTCTCGT 59.460 50.000 0.00 0.00 0.00 4.18
990 1996 0.937304 CACCGGCCATATTGTTCTCG 59.063 55.000 0.00 0.00 0.00 4.04
991 1997 0.663153 GCACCGGCCATATTGTTCTC 59.337 55.000 0.00 0.00 0.00 2.87
1011 2017 6.378710 AGAAGAAAAGCAACTAAACCACTC 57.621 37.500 0.00 0.00 0.00 3.51
1012 2018 6.603599 AGAAGAAGAAAAGCAACTAAACCACT 59.396 34.615 0.00 0.00 0.00 4.00
1014 2020 7.404671 AAGAAGAAGAAAAGCAACTAAACCA 57.595 32.000 0.00 0.00 0.00 3.67
1024 2030 6.917533 TCATGGATGAAAGAAGAAGAAAAGC 58.082 36.000 0.00 0.00 33.08 3.51
1026 2032 9.745018 ACTATCATGGATGAAAGAAGAAGAAAA 57.255 29.630 0.00 0.00 40.69 2.29
1033 2039 5.925397 CGGAGACTATCATGGATGAAAGAAG 59.075 44.000 0.00 0.00 40.69 2.85
1036 2042 3.993081 GCGGAGACTATCATGGATGAAAG 59.007 47.826 0.00 0.00 40.69 2.62
1056 2062 4.111375 AGTGAATGTAACTCTACCTGCG 57.889 45.455 0.00 0.00 0.00 5.18
1089 2095 3.873361 TCATAAAGCTTGCATCGAAGAGG 59.127 43.478 0.00 0.00 43.63 3.69
1090 2096 5.235831 TCATCATAAAGCTTGCATCGAAGAG 59.764 40.000 0.00 0.00 43.63 2.85
1092 2098 5.413969 TCATCATAAAGCTTGCATCGAAG 57.586 39.130 0.00 0.00 0.00 3.79
1093 2099 5.528320 TCATCATCATAAAGCTTGCATCGAA 59.472 36.000 0.00 0.00 0.00 3.71
1094 2100 5.058490 TCATCATCATAAAGCTTGCATCGA 58.942 37.500 0.00 0.00 0.00 3.59
1095 2101 5.352643 TCATCATCATAAAGCTTGCATCG 57.647 39.130 0.00 0.00 0.00 3.84
1097 2103 5.773176 TCCATCATCATCATAAAGCTTGCAT 59.227 36.000 0.00 0.00 0.00 3.96
1098 2104 5.134661 TCCATCATCATCATAAAGCTTGCA 58.865 37.500 0.00 0.00 0.00 4.08
1099 2105 5.700722 TCCATCATCATCATAAAGCTTGC 57.299 39.130 0.00 0.00 0.00 4.01
1100 2106 9.193133 GAAATTCCATCATCATCATAAAGCTTG 57.807 33.333 0.00 0.00 0.00 4.01
1101 2107 8.920174 TGAAATTCCATCATCATCATAAAGCTT 58.080 29.630 0.00 0.00 0.00 3.74
1102 2108 8.473358 TGAAATTCCATCATCATCATAAAGCT 57.527 30.769 0.00 0.00 0.00 3.74
1103 2109 9.193133 CTTGAAATTCCATCATCATCATAAAGC 57.807 33.333 0.00 0.00 0.00 3.51
1128 2134 7.271511 TCATGCAAACCAAACAAAAGTATTCT 58.728 30.769 0.00 0.00 0.00 2.40
1176 2182 6.238610 TCGGCGTCTCTCTAGATAAAATAC 57.761 41.667 6.85 0.00 33.30 1.89
1183 2189 2.147958 GTCATCGGCGTCTCTCTAGAT 58.852 52.381 6.85 0.00 33.30 1.98
1184 2190 1.584175 GTCATCGGCGTCTCTCTAGA 58.416 55.000 6.85 0.00 0.00 2.43
1185 2191 0.233590 CGTCATCGGCGTCTCTCTAG 59.766 60.000 6.85 0.00 0.00 2.43
1195 2206 4.492085 GCTTAGAAAGTAAACGTCATCGGC 60.492 45.833 0.00 0.00 41.85 5.54
1196 2207 4.863131 AGCTTAGAAAGTAAACGTCATCGG 59.137 41.667 0.00 0.00 41.85 4.18
1251 2262 8.857694 AAGAAAATTTTATCGGAGTACCTTCA 57.142 30.769 2.75 0.00 0.00 3.02
1252 2263 8.943002 TGAAGAAAATTTTATCGGAGTACCTTC 58.057 33.333 2.75 8.63 0.00 3.46
1261 2272 8.788813 GCGCATATATGAAGAAAATTTTATCGG 58.211 33.333 17.10 0.00 0.00 4.18
1262 2273 8.788813 GGCGCATATATGAAGAAAATTTTATCG 58.211 33.333 17.10 6.14 0.00 2.92
1263 2274 9.846248 AGGCGCATATATGAAGAAAATTTTATC 57.154 29.630 17.10 6.35 0.00 1.75
1266 2277 8.196771 TGAAGGCGCATATATGAAGAAAATTTT 58.803 29.630 17.10 2.28 0.00 1.82
1267 2278 7.649306 GTGAAGGCGCATATATGAAGAAAATTT 59.351 33.333 17.10 0.00 0.00 1.82
1268 2279 7.013655 AGTGAAGGCGCATATATGAAGAAAATT 59.986 33.333 17.10 1.46 0.00 1.82
1272 2283 4.960938 AGTGAAGGCGCATATATGAAGAA 58.039 39.130 17.10 0.00 0.00 2.52
1273 2284 4.607293 AGTGAAGGCGCATATATGAAGA 57.393 40.909 17.10 0.00 0.00 2.87
1274 2285 5.679734 AAAGTGAAGGCGCATATATGAAG 57.320 39.130 17.10 10.13 0.00 3.02
1275 2286 5.733091 GCAAAAGTGAAGGCGCATATATGAA 60.733 40.000 17.10 0.00 0.00 2.57
1276 2287 4.261155 GCAAAAGTGAAGGCGCATATATGA 60.261 41.667 17.10 0.00 0.00 2.15
1277 2288 3.976942 GCAAAAGTGAAGGCGCATATATG 59.023 43.478 10.83 8.45 0.00 1.78
1278 2289 3.885297 AGCAAAAGTGAAGGCGCATATAT 59.115 39.130 10.83 0.00 0.00 0.86
1279 2290 3.278574 AGCAAAAGTGAAGGCGCATATA 58.721 40.909 10.83 0.00 0.00 0.86
1280 2291 2.094675 AGCAAAAGTGAAGGCGCATAT 58.905 42.857 10.83 0.00 0.00 1.78
1281 2292 1.533625 AGCAAAAGTGAAGGCGCATA 58.466 45.000 10.83 0.00 0.00 3.14
1282 2293 0.675633 AAGCAAAAGTGAAGGCGCAT 59.324 45.000 10.83 0.00 0.00 4.73
1283 2294 0.248990 CAAGCAAAAGTGAAGGCGCA 60.249 50.000 10.83 0.00 0.00 6.09
1284 2295 0.940991 CCAAGCAAAAGTGAAGGCGC 60.941 55.000 0.00 0.00 0.00 6.53
1285 2296 0.318955 CCCAAGCAAAAGTGAAGGCG 60.319 55.000 0.00 0.00 0.00 5.52
1286 2297 0.601046 GCCCAAGCAAAAGTGAAGGC 60.601 55.000 0.00 0.00 39.53 4.35
1287 2298 3.593834 GCCCAAGCAAAAGTGAAGG 57.406 52.632 0.00 0.00 39.53 3.46
1337 2348 6.183360 TGCTCACCCCATGAATGAAAATATTC 60.183 38.462 0.00 0.00 36.69 1.75
1340 2351 4.402155 GTGCTCACCCCATGAATGAAAATA 59.598 41.667 0.00 0.00 36.69 1.40
1342 2353 2.562298 GTGCTCACCCCATGAATGAAAA 59.438 45.455 0.00 0.00 36.69 2.29
1351 2362 2.660064 GGAGTCGTGCTCACCCCAT 61.660 63.158 10.75 0.00 45.88 4.00
1411 2422 0.533755 CCCCTCTGGCACATCGATTC 60.534 60.000 0.00 0.00 38.20 2.52
1431 2442 1.066422 CCTCGCTTGAGCTCGCATA 59.934 57.895 9.64 0.00 38.47 3.14
1549 2560 8.759782 CAGGTCCTTTTTAGGAGTAGAGATTTA 58.240 37.037 0.00 0.00 38.88 1.40
1562 2573 4.695928 GTGAAGCTACCAGGTCCTTTTTAG 59.304 45.833 0.00 0.00 0.00 1.85
1567 2578 0.984995 GGTGAAGCTACCAGGTCCTT 59.015 55.000 0.00 0.00 40.54 3.36
1568 2579 0.117340 AGGTGAAGCTACCAGGTCCT 59.883 55.000 8.39 0.00 43.37 3.85
1573 2584 1.134280 CCATGGAGGTGAAGCTACCAG 60.134 57.143 5.56 0.00 43.37 4.00
1601 2612 3.196469 GTGAAGAGGTGATGGTGAGATGA 59.804 47.826 0.00 0.00 0.00 2.92
1603 2614 2.167281 CGTGAAGAGGTGATGGTGAGAT 59.833 50.000 0.00 0.00 0.00 2.75
1660 2679 5.549742 TGGTTAGGAACGTTTAGAAAGGA 57.450 39.130 0.46 0.00 0.00 3.36
1667 2686 3.129871 CGTGGTTGGTTAGGAACGTTTA 58.870 45.455 0.46 0.00 0.00 2.01
1672 2691 3.465871 TGTAACGTGGTTGGTTAGGAAC 58.534 45.455 0.00 0.00 31.02 3.62
1679 2698 2.223852 GCCAATTTGTAACGTGGTTGGT 60.224 45.455 12.36 0.00 38.61 3.67
1680 2699 2.223829 TGCCAATTTGTAACGTGGTTGG 60.224 45.455 0.00 0.00 39.20 3.77
1681 2700 3.049206 CTGCCAATTTGTAACGTGGTTG 58.951 45.455 0.00 0.00 33.43 3.77
1682 2701 2.035321 CCTGCCAATTTGTAACGTGGTT 59.965 45.455 0.00 0.00 33.43 3.67
1685 2704 3.305110 GTTCCTGCCAATTTGTAACGTG 58.695 45.455 0.00 0.00 0.00 4.49
1686 2705 2.295070 GGTTCCTGCCAATTTGTAACGT 59.705 45.455 0.00 0.00 0.00 3.99
1687 2706 2.667171 CGGTTCCTGCCAATTTGTAACG 60.667 50.000 0.00 0.00 0.00 3.18
1688 2707 2.554893 TCGGTTCCTGCCAATTTGTAAC 59.445 45.455 0.00 0.00 0.00 2.50
1689 2708 2.865079 TCGGTTCCTGCCAATTTGTAA 58.135 42.857 0.00 0.00 0.00 2.41
1690 2709 2.570415 TCGGTTCCTGCCAATTTGTA 57.430 45.000 0.00 0.00 0.00 2.41
1691 2710 1.923356 ATCGGTTCCTGCCAATTTGT 58.077 45.000 0.00 0.00 0.00 2.83
1692 2711 2.223572 GCTATCGGTTCCTGCCAATTTG 60.224 50.000 0.00 0.00 0.00 2.32
1693 2712 2.024414 GCTATCGGTTCCTGCCAATTT 58.976 47.619 0.00 0.00 0.00 1.82
1694 2713 1.064758 TGCTATCGGTTCCTGCCAATT 60.065 47.619 0.00 0.00 0.00 2.32
1695 2714 0.546122 TGCTATCGGTTCCTGCCAAT 59.454 50.000 0.00 0.00 0.00 3.16
1696 2715 0.392461 GTGCTATCGGTTCCTGCCAA 60.392 55.000 0.00 0.00 0.00 4.52
1697 2716 1.220749 GTGCTATCGGTTCCTGCCA 59.779 57.895 0.00 0.00 0.00 4.92
1698 2717 1.883084 CGTGCTATCGGTTCCTGCC 60.883 63.158 0.00 0.00 0.00 4.85
1699 2718 0.739813 AACGTGCTATCGGTTCCTGC 60.740 55.000 0.00 0.00 34.94 4.85
1700 2719 1.722011 AAACGTGCTATCGGTTCCTG 58.278 50.000 0.00 0.00 35.83 3.86
1701 2720 2.733227 CGTAAACGTGCTATCGGTTCCT 60.733 50.000 0.00 0.00 41.12 3.36
1702 2721 1.585214 CGTAAACGTGCTATCGGTTCC 59.415 52.381 0.00 0.00 41.12 3.62
1703 2722 2.518949 TCGTAAACGTGCTATCGGTTC 58.481 47.619 2.02 0.00 41.12 3.62
1704 2723 2.634982 TCGTAAACGTGCTATCGGTT 57.365 45.000 2.02 5.37 43.28 4.44
1705 2724 2.634982 TTCGTAAACGTGCTATCGGT 57.365 45.000 2.02 0.00 40.80 4.69
1706 2725 2.662637 TGTTTCGTAAACGTGCTATCGG 59.337 45.455 2.02 0.00 44.28 4.18
1707 2726 3.362831 ACTGTTTCGTAAACGTGCTATCG 59.637 43.478 2.02 0.00 44.28 2.92
1708 2727 4.383649 TCACTGTTTCGTAAACGTGCTATC 59.616 41.667 18.39 0.00 44.28 2.08
1709 2728 4.300803 TCACTGTTTCGTAAACGTGCTAT 58.699 39.130 18.39 0.00 44.28 2.97
1710 2729 3.704512 TCACTGTTTCGTAAACGTGCTA 58.295 40.909 18.39 9.19 44.28 3.49
1711 2730 2.542597 TCACTGTTTCGTAAACGTGCT 58.457 42.857 18.39 0.00 44.28 4.40
1712 2731 3.307339 TTCACTGTTTCGTAAACGTGC 57.693 42.857 18.39 0.00 44.28 5.34
1713 2732 4.901881 GGATTTCACTGTTTCGTAAACGTG 59.098 41.667 17.79 17.79 44.28 4.49
1714 2733 4.571580 TGGATTTCACTGTTTCGTAAACGT 59.428 37.500 2.02 0.00 44.28 3.99
1715 2734 5.085636 TGGATTTCACTGTTTCGTAAACG 57.914 39.130 0.00 0.00 44.28 3.60
1716 2735 7.924103 AATTGGATTTCACTGTTTCGTAAAC 57.076 32.000 4.24 4.24 41.73 2.01
1721 2740 6.639212 CAACAAATTGGATTTCACTGTTTCG 58.361 36.000 0.00 0.00 31.63 3.46
1738 2757 7.884354 AGTATTTGGAATTGATTGCCAACAAAT 59.116 29.630 0.00 0.00 41.08 2.32
1742 2761 8.034804 AGTTAGTATTTGGAATTGATTGCCAAC 58.965 33.333 0.00 0.00 41.08 3.77
1743 2762 8.133024 AGTTAGTATTTGGAATTGATTGCCAA 57.867 30.769 0.00 0.00 39.75 4.52
1756 2775 7.307989 CGATGCAATAGGGAAGTTAGTATTTGG 60.308 40.741 0.00 0.00 0.00 3.28
1762 2781 5.552870 ATCGATGCAATAGGGAAGTTAGT 57.447 39.130 0.00 0.00 0.00 2.24
1775 2794 2.164219 GGAAAAGCAGGAATCGATGCAA 59.836 45.455 5.57 0.00 45.01 4.08
1776 2795 1.745087 GGAAAAGCAGGAATCGATGCA 59.255 47.619 5.57 0.00 45.01 3.96
1785 2804 3.586470 TGGTTGTTAGGAAAAGCAGGA 57.414 42.857 0.00 0.00 30.75 3.86
1790 2809 8.622948 AGTAGAGATTTGGTTGTTAGGAAAAG 57.377 34.615 0.00 0.00 0.00 2.27
1999 3018 5.411831 TCAGTGATGTCTGCTTTATGACT 57.588 39.130 0.00 0.00 35.63 3.41
2215 3250 9.762933 TTGACATATTTGACGAAGATATGATCA 57.237 29.630 15.24 0.00 37.26 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.