Multiple sequence alignment - TraesCS2B01G616500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G616500 chr2B 100.000 2377 0 0 1 2377 793654699 793657075 0.000000e+00 4390.0
1 TraesCS2B01G616500 chr2B 91.379 348 21 7 2033 2377 787859374 787859033 4.000000e-128 468.0
2 TraesCS2B01G616500 chr2B 89.388 245 19 5 2033 2275 787824421 787824182 4.290000e-78 302.0
3 TraesCS2B01G616500 chr2B 88.017 242 18 6 2033 2273 51958452 51958683 2.600000e-70 276.0
4 TraesCS2B01G616500 chr2B 100.000 65 0 0 2590 2654 793657288 793657352 1.290000e-23 121.0
5 TraesCS2B01G616500 chr2B 98.305 59 1 0 2596 2654 787858947 787858889 1.300000e-18 104.0
6 TraesCS2B01G616500 chr2B 93.750 64 3 1 1 64 488046347 488046285 7.820000e-16 95.3
7 TraesCS2B01G616500 chr2D 88.791 2043 71 56 60 2003 635666122 635668105 0.000000e+00 2359.0
8 TraesCS2B01G616500 chr2D 90.405 469 14 3 136 574 439391868 439392335 2.940000e-164 588.0
9 TraesCS2B01G616500 chrUn 93.072 996 23 9 996 1991 124882471 124881522 0.000000e+00 1415.0
10 TraesCS2B01G616500 chrUn 87.500 200 6 5 689 869 124882780 124882581 2.070000e-51 213.0
11 TraesCS2B01G616500 chr1B 93.966 348 17 2 2031 2377 647139515 647139171 8.420000e-145 523.0
12 TraesCS2B01G616500 chr1B 93.802 242 12 1 2033 2274 647124189 647123951 6.980000e-96 361.0
13 TraesCS2B01G616500 chr1B 96.721 61 2 0 1 61 17543755 17543695 4.670000e-18 102.0
14 TraesCS2B01G616500 chr1B 92.308 65 5 0 2590 2654 647139090 647139026 2.810000e-15 93.5
15 TraesCS2B01G616500 chr5B 90.678 354 19 4 2033 2377 102173950 102173602 2.410000e-125 459.0
16 TraesCS2B01G616500 chr5B 94.043 235 12 1 2033 2267 102169149 102168917 3.250000e-94 355.0
17 TraesCS2B01G616500 chr5B 96.825 63 2 0 2590 2652 102173521 102173459 3.610000e-19 106.0
18 TraesCS2B01G616500 chr7B 97.110 173 5 0 1221 1393 661736978 661736806 2.580000e-75 292.0
19 TraesCS2B01G616500 chr7B 94.545 55 3 0 2590 2644 455322687 455322741 4.710000e-13 86.1
20 TraesCS2B01G616500 chr7B 92.063 63 2 1 1013 1075 661737037 661736978 4.710000e-13 86.1
21 TraesCS2B01G616500 chr5D 80.473 338 44 17 2048 2377 485098965 485098642 3.410000e-59 239.0
22 TraesCS2B01G616500 chr5D 80.645 248 35 10 2033 2274 9356815 9356575 2.100000e-41 180.0
23 TraesCS2B01G616500 chr5D 96.923 65 2 0 2590 2654 485098562 485098498 2.790000e-20 110.0
24 TraesCS2B01G616500 chr5D 90.411 73 4 3 1 72 104260964 104260894 2.810000e-15 93.5
25 TraesCS2B01G616500 chr1D 87.027 185 17 5 2090 2270 407172518 407172699 4.480000e-48 202.0
26 TraesCS2B01G616500 chr1D 96.923 65 2 0 2590 2654 407167985 407168049 2.790000e-20 110.0
27 TraesCS2B01G616500 chr1D 96.774 62 1 1 1 62 70334102 70334042 4.670000e-18 102.0
28 TraesCS2B01G616500 chr6D 95.238 63 2 1 1 62 272799760 272799822 6.050000e-17 99.0
29 TraesCS2B01G616500 chr6D 95.238 63 2 1 1 62 272820890 272820952 6.050000e-17 99.0
30 TraesCS2B01G616500 chr6D 95.161 62 2 1 1 61 272845500 272845561 2.170000e-16 97.1
31 TraesCS2B01G616500 chr4A 96.667 60 1 1 1 60 722781448 722781506 6.050000e-17 99.0
32 TraesCS2B01G616500 chr6A 91.429 70 4 2 1 68 224094234 224094303 7.820000e-16 95.3
33 TraesCS2B01G616500 chr4D 92.188 64 5 0 2590 2653 239447757 239447694 1.010000e-14 91.6
34 TraesCS2B01G616500 chr7A 94.545 55 3 0 2590 2644 712648224 712648278 4.710000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G616500 chr2B 793654699 793657352 2653 False 2255.5 4390 100.000 1 2654 2 chr2B.!!$F2 2653
1 TraesCS2B01G616500 chr2D 635666122 635668105 1983 False 2359.0 2359 88.791 60 2003 1 chr2D.!!$F2 1943
2 TraesCS2B01G616500 chrUn 124881522 124882780 1258 True 814.0 1415 90.286 689 1991 2 chrUn.!!$R1 1302

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 1078 0.100146 GTACCGTACGGCCTCAAGAG 59.9 60.0 33.62 7.53 39.32 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2219 0.041663 ACACACGCACACGCAAATAC 60.042 50.0 0.0 0.0 45.53 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.916358 CCATGATGGCCTTCCCTC 57.084 61.111 15.62 0.14 0.00 4.30
54 55 1.925120 CCATGATGGCCTTCCCTCA 59.075 57.895 15.62 5.71 40.51 3.86
55 56 0.259647 CCATGATGGCCTTCCCTCAA 59.740 55.000 15.62 0.00 39.82 3.02
56 57 1.342275 CCATGATGGCCTTCCCTCAAA 60.342 52.381 15.62 0.00 39.82 2.69
57 58 2.459644 CATGATGGCCTTCCCTCAAAA 58.540 47.619 15.62 0.00 39.82 2.44
58 59 2.692709 TGATGGCCTTCCCTCAAAAA 57.307 45.000 15.62 0.00 34.64 1.94
133 134 0.376152 CTTAAGCGCATGCACTCCAG 59.624 55.000 19.57 8.94 46.23 3.86
156 176 2.100916 TGTATGGAGAGCTCGTTTAGGC 59.899 50.000 8.37 0.00 0.00 3.93
161 181 3.451178 TGGAGAGCTCGTTTAGGCTAAAT 59.549 43.478 21.59 6.38 39.05 1.40
167 187 6.869388 AGAGCTCGTTTAGGCTAAATTATAGC 59.131 38.462 21.59 22.88 39.05 2.97
186 206 4.013267 AGCCAATTTCATCTCTATCCCG 57.987 45.455 0.00 0.00 0.00 5.14
191 211 4.881019 ATTTCATCTCTATCCCGTGGAG 57.119 45.455 0.00 0.00 34.05 3.86
192 212 1.621992 TCATCTCTATCCCGTGGAGC 58.378 55.000 0.00 0.00 35.54 4.70
193 213 0.605589 CATCTCTATCCCGTGGAGCC 59.394 60.000 0.00 0.00 35.54 4.70
210 237 2.297033 GAGCCCAAAGATTGTTTGCTGA 59.703 45.455 0.88 0.00 31.21 4.26
211 238 2.901839 AGCCCAAAGATTGTTTGCTGAT 59.098 40.909 0.88 0.00 30.31 2.90
223 250 0.108186 TTGCTGATCCACTAGCCGTG 60.108 55.000 0.72 0.00 43.41 4.94
226 253 0.532573 CTGATCCACTAGCCGTGTGT 59.467 55.000 3.43 0.00 42.20 3.72
241 268 2.726373 CGTGTGTGACAGATCGAGAGAC 60.726 54.545 0.00 0.00 46.97 3.36
295 322 0.835941 TGTGTGCCAAATTTTGCCCT 59.164 45.000 11.39 0.00 0.00 5.19
348 375 7.629866 GCCCTTTGAGTTTAGTTAGTGTTGTTT 60.630 37.037 0.00 0.00 0.00 2.83
411 438 9.773328 TTTCAATAATTTCTAGAAGATGTTGCG 57.227 29.630 17.07 3.00 0.00 4.85
465 492 3.055385 TGGGCGATCCACTATATTAAGGC 60.055 47.826 0.00 0.00 41.46 4.35
593 642 0.240945 AGCCGGATTGCTTGTTTTCG 59.759 50.000 5.05 0.00 38.85 3.46
624 673 2.159014 GCGGTGTGTCATGGACCTAATA 60.159 50.000 0.00 0.00 0.00 0.98
629 679 6.202188 CGGTGTGTCATGGACCTAATAATTAC 59.798 42.308 0.00 0.00 0.00 1.89
640 690 9.016243 TGGACCTAATAATTACTTTAATCCCCA 57.984 33.333 0.00 0.00 0.00 4.96
668 724 3.143728 ACGTACCACCCAAAGAATGTTC 58.856 45.455 0.00 0.00 0.00 3.18
673 729 4.482990 ACCACCCAAAGAATGTTCTCAAT 58.517 39.130 0.00 0.00 36.28 2.57
674 730 5.640147 ACCACCCAAAGAATGTTCTCAATA 58.360 37.500 0.00 0.00 36.28 1.90
675 731 5.476945 ACCACCCAAAGAATGTTCTCAATAC 59.523 40.000 0.00 0.00 36.28 1.89
676 732 5.391950 CCACCCAAAGAATGTTCTCAATACG 60.392 44.000 0.00 0.00 36.28 3.06
773 832 1.210478 GGCCTGCTTCATCCTTGACTA 59.790 52.381 0.00 0.00 0.00 2.59
782 841 6.127591 TGCTTCATCCTTGACTAGACTCTAAC 60.128 42.308 0.00 0.00 0.00 2.34
854 935 7.153985 GGTTGATCAATTTCAAGTTGGATTGA 58.846 34.615 24.66 24.66 41.24 2.57
864 945 6.558771 TCAAGTTGGATTGATTGTGTAGTG 57.441 37.500 2.34 0.00 34.31 2.74
865 946 6.295249 TCAAGTTGGATTGATTGTGTAGTGA 58.705 36.000 2.34 0.00 34.31 3.41
866 947 6.204688 TCAAGTTGGATTGATTGTGTAGTGAC 59.795 38.462 2.34 0.00 34.31 3.67
867 948 5.869579 AGTTGGATTGATTGTGTAGTGACT 58.130 37.500 0.00 0.00 0.00 3.41
868 949 5.702670 AGTTGGATTGATTGTGTAGTGACTG 59.297 40.000 0.00 0.00 0.00 3.51
869 950 5.482163 TGGATTGATTGTGTAGTGACTGA 57.518 39.130 0.00 0.00 0.00 3.41
870 951 5.237815 TGGATTGATTGTGTAGTGACTGAC 58.762 41.667 0.00 0.00 0.00 3.51
871 952 5.012046 TGGATTGATTGTGTAGTGACTGACT 59.988 40.000 0.00 0.00 38.88 3.41
960 1078 0.100146 GTACCGTACGGCCTCAAGAG 59.900 60.000 33.62 7.53 39.32 2.85
962 1080 1.153823 CCGTACGGCCTCAAGAGTG 60.154 63.158 23.44 0.00 0.00 3.51
983 1101 5.850557 TGGATCACACACATTTTTCAAGT 57.149 34.783 0.00 0.00 0.00 3.16
984 1102 6.951062 TGGATCACACACATTTTTCAAGTA 57.049 33.333 0.00 0.00 0.00 2.24
985 1103 6.734137 TGGATCACACACATTTTTCAAGTAC 58.266 36.000 0.00 0.00 0.00 2.73
986 1104 6.545666 TGGATCACACACATTTTTCAAGTACT 59.454 34.615 0.00 0.00 0.00 2.73
987 1105 7.717436 TGGATCACACACATTTTTCAAGTACTA 59.283 33.333 0.00 0.00 0.00 1.82
988 1106 8.730680 GGATCACACACATTTTTCAAGTACTAT 58.269 33.333 0.00 0.00 0.00 2.12
993 1111 9.872757 ACACACATTTTTCAAGTACTATAAACG 57.127 29.630 0.00 0.00 0.00 3.60
994 1112 9.872757 CACACATTTTTCAAGTACTATAAACGT 57.127 29.630 0.00 0.00 0.00 3.99
1008 1126 0.669077 AAACGTACGCCATGGCAAAA 59.331 45.000 34.93 17.44 42.06 2.44
1009 1127 0.239879 AACGTACGCCATGGCAAAAG 59.760 50.000 34.93 24.70 42.06 2.27
1010 1128 1.514014 CGTACGCCATGGCAAAAGC 60.514 57.895 34.93 18.36 42.06 3.51
1040 1170 4.044439 CTCCCTGCTGCTGCCCTT 62.044 66.667 13.47 0.00 38.71 3.95
1041 1171 4.355720 TCCCTGCTGCTGCCCTTG 62.356 66.667 13.47 1.05 38.71 3.61
1397 1527 2.513204 CATCAGCGCCACCTCCAG 60.513 66.667 2.29 0.00 0.00 3.86
1672 1802 1.836802 GAGCCTCACCTCTTCTCCATT 59.163 52.381 0.00 0.00 0.00 3.16
1673 1803 3.034635 GAGCCTCACCTCTTCTCCATTA 58.965 50.000 0.00 0.00 0.00 1.90
1674 1804 3.645687 GAGCCTCACCTCTTCTCCATTAT 59.354 47.826 0.00 0.00 0.00 1.28
1675 1805 4.820775 AGCCTCACCTCTTCTCCATTATA 58.179 43.478 0.00 0.00 0.00 0.98
1676 1806 5.410602 AGCCTCACCTCTTCTCCATTATAT 58.589 41.667 0.00 0.00 0.00 0.86
1677 1807 5.848921 AGCCTCACCTCTTCTCCATTATATT 59.151 40.000 0.00 0.00 0.00 1.28
1727 1857 1.606668 TGAACTTGAATTGGTCGTGCC 59.393 47.619 0.00 0.00 37.90 5.01
1728 1858 1.880027 GAACTTGAATTGGTCGTGCCT 59.120 47.619 0.00 0.00 38.35 4.75
1729 1859 1.981256 ACTTGAATTGGTCGTGCCTT 58.019 45.000 0.00 0.00 38.35 4.35
1730 1860 1.880027 ACTTGAATTGGTCGTGCCTTC 59.120 47.619 0.00 0.00 38.35 3.46
1731 1861 1.200020 CTTGAATTGGTCGTGCCTTCC 59.800 52.381 0.00 0.00 38.35 3.46
1734 1864 1.244019 AATTGGTCGTGCCTTCCTGC 61.244 55.000 1.06 0.00 38.35 4.85
1744 1874 1.975327 CCTTCCTGCTGTTCTCCGA 59.025 57.895 0.00 0.00 0.00 4.55
1834 1966 3.719173 TGTGGGGTCAAATTTTCGAAC 57.281 42.857 0.00 0.00 0.00 3.95
1897 2029 9.198837 GAGATTTAATTTAGAGGTAGTAGCTGC 57.801 37.037 6.60 0.00 0.00 5.25
1938 2076 2.985282 CCCGCTTCAGCTTTGCCA 60.985 61.111 0.00 0.00 39.32 4.92
1954 2092 3.076079 TGCCAATGAAGCTGAATCAGA 57.924 42.857 15.38 0.00 32.44 3.27
1993 2131 6.106673 CACCTAATTCGTTTGAGATACAGGT 58.893 40.000 0.00 0.00 0.00 4.00
2003 2141 9.570468 TCGTTTGAGATACAGGTACTATATTCT 57.430 33.333 0.00 0.00 36.02 2.40
2049 2187 9.681062 AATTGTATGTGTTAAAGTATAGGCTGT 57.319 29.630 0.00 0.00 0.00 4.40
2051 2189 9.590451 TTGTATGTGTTAAAGTATAGGCTGTAC 57.410 33.333 12.96 12.96 0.00 2.90
2052 2190 8.974238 TGTATGTGTTAAAGTATAGGCTGTACT 58.026 33.333 17.12 17.12 33.98 2.73
2053 2191 9.813446 GTATGTGTTAAAGTATAGGCTGTACTT 57.187 33.333 25.42 25.42 42.53 2.24
2054 2192 8.718102 ATGTGTTAAAGTATAGGCTGTACTTG 57.282 34.615 29.65 0.00 40.49 3.16
2055 2193 7.673180 TGTGTTAAAGTATAGGCTGTACTTGT 58.327 34.615 29.65 22.20 40.49 3.16
2056 2194 8.805175 TGTGTTAAAGTATAGGCTGTACTTGTA 58.195 33.333 29.65 21.43 40.49 2.41
2057 2195 9.298774 GTGTTAAAGTATAGGCTGTACTTGTAG 57.701 37.037 29.65 0.00 40.49 2.74
2058 2196 9.246670 TGTTAAAGTATAGGCTGTACTTGTAGA 57.753 33.333 29.65 18.89 40.49 2.59
2061 2199 6.394025 AGTATAGGCTGTACTTGTAGAAGC 57.606 41.667 17.12 6.78 31.68 3.86
2062 2200 2.656560 AGGCTGTACTTGTAGAAGCG 57.343 50.000 0.00 0.00 34.66 4.68
2063 2201 1.893801 AGGCTGTACTTGTAGAAGCGT 59.106 47.619 0.00 6.90 34.66 5.07
2064 2202 1.993370 GGCTGTACTTGTAGAAGCGTG 59.007 52.381 0.00 0.00 34.66 5.34
2065 2203 2.352421 GGCTGTACTTGTAGAAGCGTGA 60.352 50.000 0.00 0.00 34.66 4.35
2066 2204 2.662156 GCTGTACTTGTAGAAGCGTGAC 59.338 50.000 0.00 0.00 31.68 3.67
2067 2205 3.855895 GCTGTACTTGTAGAAGCGTGACA 60.856 47.826 0.00 0.00 31.68 3.58
2068 2206 4.486090 CTGTACTTGTAGAAGCGTGACAT 58.514 43.478 0.00 0.00 31.68 3.06
2069 2207 5.632244 TGTACTTGTAGAAGCGTGACATA 57.368 39.130 0.00 0.00 31.68 2.29
2070 2208 5.396484 TGTACTTGTAGAAGCGTGACATAC 58.604 41.667 0.00 0.00 31.68 2.39
2071 2209 4.785511 ACTTGTAGAAGCGTGACATACT 57.214 40.909 0.00 0.00 31.68 2.12
2072 2210 4.486090 ACTTGTAGAAGCGTGACATACTG 58.514 43.478 0.00 0.00 31.68 2.74
2073 2211 4.022242 ACTTGTAGAAGCGTGACATACTGT 60.022 41.667 0.00 0.00 31.68 3.55
2074 2212 4.514781 TGTAGAAGCGTGACATACTGTT 57.485 40.909 0.00 0.00 0.00 3.16
2075 2213 5.632244 TGTAGAAGCGTGACATACTGTTA 57.368 39.130 0.00 0.00 0.00 2.41
2076 2214 5.396484 TGTAGAAGCGTGACATACTGTTAC 58.604 41.667 0.00 0.00 34.04 2.50
2090 2228 7.157050 CATACTGTTACGTATGTATTTGCGT 57.843 36.000 14.46 0.00 41.00 5.24
2091 2229 5.444586 ACTGTTACGTATGTATTTGCGTG 57.555 39.130 0.00 0.00 38.10 5.34
2092 2230 4.925054 ACTGTTACGTATGTATTTGCGTGT 59.075 37.500 0.00 0.00 38.10 4.49
2093 2231 5.164031 ACTGTTACGTATGTATTTGCGTGTG 60.164 40.000 0.00 0.00 38.10 3.82
2094 2232 2.798834 ACGTATGTATTTGCGTGTGC 57.201 45.000 0.00 0.00 43.20 4.57
2104 2242 4.415490 GCGTGTGCGTGTGTATTG 57.585 55.556 0.00 0.00 40.81 1.90
2105 2243 1.567537 GCGTGTGCGTGTGTATTGT 59.432 52.632 0.00 0.00 40.81 2.71
2106 2244 0.785378 GCGTGTGCGTGTGTATTGTA 59.215 50.000 0.00 0.00 40.81 2.41
2107 2245 1.192757 GCGTGTGCGTGTGTATTGTAA 59.807 47.619 0.00 0.00 40.81 2.41
2108 2246 2.818121 CGTGTGCGTGTGTATTGTAAC 58.182 47.619 0.00 0.00 0.00 2.50
2109 2247 2.473609 CGTGTGCGTGTGTATTGTAACT 59.526 45.455 0.00 0.00 0.00 2.24
2110 2248 3.669588 CGTGTGCGTGTGTATTGTAACTA 59.330 43.478 0.00 0.00 0.00 2.24
2111 2249 4.201456 CGTGTGCGTGTGTATTGTAACTAG 60.201 45.833 0.00 0.00 0.00 2.57
2112 2250 3.676172 TGTGCGTGTGTATTGTAACTAGC 59.324 43.478 0.00 0.00 0.00 3.42
2113 2251 2.918600 TGCGTGTGTATTGTAACTAGCG 59.081 45.455 0.00 0.00 0.00 4.26
2114 2252 2.284855 GCGTGTGTATTGTAACTAGCGC 60.285 50.000 0.00 0.00 34.65 5.92
2115 2253 2.918600 CGTGTGTATTGTAACTAGCGCA 59.081 45.455 11.47 0.00 0.00 6.09
2116 2254 3.001070 CGTGTGTATTGTAACTAGCGCAG 60.001 47.826 11.47 7.81 0.00 5.18
2117 2255 3.306166 GTGTGTATTGTAACTAGCGCAGG 59.694 47.826 11.47 3.75 0.00 4.85
2118 2256 3.056393 TGTGTATTGTAACTAGCGCAGGT 60.056 43.478 11.47 6.39 44.89 4.00
2119 2257 3.930848 GTGTATTGTAACTAGCGCAGGTT 59.069 43.478 11.47 16.26 40.68 3.50
2120 2258 3.930229 TGTATTGTAACTAGCGCAGGTTG 59.070 43.478 22.17 6.05 40.68 3.77
2121 2259 2.536761 TTGTAACTAGCGCAGGTTGT 57.463 45.000 22.17 6.61 46.97 3.32
2129 2267 5.184340 ACTAGCGCAGGTTGTTAGTATAG 57.816 43.478 11.47 0.00 41.72 1.31
2130 2268 4.885907 ACTAGCGCAGGTTGTTAGTATAGA 59.114 41.667 11.47 0.00 41.72 1.98
2131 2269 4.939052 AGCGCAGGTTGTTAGTATAGAT 57.061 40.909 11.47 0.00 27.67 1.98
2132 2270 4.872664 AGCGCAGGTTGTTAGTATAGATC 58.127 43.478 11.47 0.00 27.67 2.75
2133 2271 4.341235 AGCGCAGGTTGTTAGTATAGATCA 59.659 41.667 11.47 0.00 27.67 2.92
2134 2272 5.047847 GCGCAGGTTGTTAGTATAGATCAA 58.952 41.667 0.30 0.00 0.00 2.57
2135 2273 5.175856 GCGCAGGTTGTTAGTATAGATCAAG 59.824 44.000 0.30 0.00 0.00 3.02
2136 2274 5.175856 CGCAGGTTGTTAGTATAGATCAAGC 59.824 44.000 0.00 0.00 36.96 4.01
2137 2275 5.467063 GCAGGTTGTTAGTATAGATCAAGCC 59.533 44.000 0.00 0.00 37.26 4.35
2138 2276 6.686632 GCAGGTTGTTAGTATAGATCAAGCCT 60.687 42.308 0.00 0.00 37.26 4.58
2139 2277 7.275920 CAGGTTGTTAGTATAGATCAAGCCTT 58.724 38.462 0.00 0.00 37.26 4.35
2140 2278 8.421784 CAGGTTGTTAGTATAGATCAAGCCTTA 58.578 37.037 0.00 0.00 37.26 2.69
2141 2279 9.160412 AGGTTGTTAGTATAGATCAAGCCTTAT 57.840 33.333 0.00 0.00 37.26 1.73
2142 2280 9.425577 GGTTGTTAGTATAGATCAAGCCTTATC 57.574 37.037 0.00 0.00 32.66 1.75
2143 2281 9.425577 GTTGTTAGTATAGATCAAGCCTTATCC 57.574 37.037 0.00 0.00 0.00 2.59
2144 2282 7.827701 TGTTAGTATAGATCAAGCCTTATCCG 58.172 38.462 0.00 0.00 0.00 4.18
2145 2283 5.923733 AGTATAGATCAAGCCTTATCCGG 57.076 43.478 0.00 0.00 0.00 5.14
2146 2284 5.334421 AGTATAGATCAAGCCTTATCCGGT 58.666 41.667 0.00 0.00 0.00 5.28
2147 2285 2.918712 AGATCAAGCCTTATCCGGTG 57.081 50.000 0.00 0.00 0.00 4.94
2148 2286 2.119495 AGATCAAGCCTTATCCGGTGT 58.881 47.619 0.00 0.00 0.00 4.16
2149 2287 3.305720 AGATCAAGCCTTATCCGGTGTA 58.694 45.455 0.00 0.00 0.00 2.90
2150 2288 3.322254 AGATCAAGCCTTATCCGGTGTAG 59.678 47.826 0.00 0.00 0.00 2.74
2151 2289 1.138266 TCAAGCCTTATCCGGTGTAGC 59.862 52.381 0.00 0.00 0.00 3.58
2152 2290 1.139058 CAAGCCTTATCCGGTGTAGCT 59.861 52.381 0.00 1.80 0.00 3.32
2153 2291 1.497161 AGCCTTATCCGGTGTAGCTT 58.503 50.000 0.00 0.00 0.00 3.74
2154 2292 1.139058 AGCCTTATCCGGTGTAGCTTG 59.861 52.381 0.00 0.00 0.00 4.01
2155 2293 1.810412 GCCTTATCCGGTGTAGCTTGG 60.810 57.143 0.00 0.00 0.00 3.61
2156 2294 1.760613 CCTTATCCGGTGTAGCTTGGA 59.239 52.381 0.00 0.00 34.45 3.53
2157 2295 2.224066 CCTTATCCGGTGTAGCTTGGAG 60.224 54.545 0.00 0.00 33.21 3.86
2158 2296 2.154567 TATCCGGTGTAGCTTGGAGT 57.845 50.000 0.00 0.00 33.21 3.85
2159 2297 2.154567 ATCCGGTGTAGCTTGGAGTA 57.845 50.000 0.00 0.00 33.21 2.59
2160 2298 1.471119 TCCGGTGTAGCTTGGAGTAG 58.529 55.000 0.00 0.00 0.00 2.57
2161 2299 0.460311 CCGGTGTAGCTTGGAGTAGG 59.540 60.000 0.00 0.00 0.00 3.18
2162 2300 0.460311 CGGTGTAGCTTGGAGTAGGG 59.540 60.000 0.00 0.00 0.00 3.53
2163 2301 0.831307 GGTGTAGCTTGGAGTAGGGG 59.169 60.000 0.00 0.00 0.00 4.79
2164 2302 0.178301 GTGTAGCTTGGAGTAGGGGC 59.822 60.000 0.00 0.00 0.00 5.80
2165 2303 0.252513 TGTAGCTTGGAGTAGGGGCA 60.253 55.000 0.00 0.00 0.00 5.36
2166 2304 0.909623 GTAGCTTGGAGTAGGGGCAA 59.090 55.000 0.00 0.00 0.00 4.52
2167 2305 1.280998 GTAGCTTGGAGTAGGGGCAAA 59.719 52.381 0.00 0.00 0.00 3.68
2168 2306 0.329596 AGCTTGGAGTAGGGGCAAAG 59.670 55.000 0.00 0.00 0.00 2.77
2169 2307 0.328258 GCTTGGAGTAGGGGCAAAGA 59.672 55.000 0.00 0.00 0.00 2.52
2170 2308 1.950954 GCTTGGAGTAGGGGCAAAGAC 60.951 57.143 0.00 0.00 0.00 3.01
2171 2309 1.630878 CTTGGAGTAGGGGCAAAGACT 59.369 52.381 0.00 0.00 0.00 3.24
2172 2310 1.742308 TGGAGTAGGGGCAAAGACTT 58.258 50.000 0.00 0.00 0.00 3.01
2173 2311 1.351017 TGGAGTAGGGGCAAAGACTTG 59.649 52.381 0.00 0.00 35.49 3.16
2184 2322 3.847037 CAAAGACTTGCAACAACATGC 57.153 42.857 0.00 0.00 46.58 4.06
2190 2328 2.126346 GCAACAACATGCGCCTCC 60.126 61.111 4.18 0.00 36.45 4.30
2191 2329 2.176546 CAACAACATGCGCCTCCG 59.823 61.111 4.18 0.00 37.57 4.63
2192 2330 2.031919 AACAACATGCGCCTCCGA 59.968 55.556 4.18 0.00 36.29 4.55
2193 2331 1.377202 AACAACATGCGCCTCCGAT 60.377 52.632 4.18 0.00 36.29 4.18
2194 2332 1.647545 AACAACATGCGCCTCCGATG 61.648 55.000 4.18 3.67 36.29 3.84
2195 2333 2.108514 CAACATGCGCCTCCGATGT 61.109 57.895 4.18 4.44 37.05 3.06
2196 2334 0.809636 CAACATGCGCCTCCGATGTA 60.810 55.000 4.18 0.00 35.62 2.29
2197 2335 0.107897 AACATGCGCCTCCGATGTAA 60.108 50.000 4.18 0.00 35.62 2.41
2198 2336 0.106708 ACATGCGCCTCCGATGTAAT 59.893 50.000 4.18 0.00 35.23 1.89
2199 2337 0.792640 CATGCGCCTCCGATGTAATC 59.207 55.000 4.18 0.00 40.89 1.75
2200 2338 0.681733 ATGCGCCTCCGATGTAATCT 59.318 50.000 4.18 0.00 42.58 2.40
2201 2339 0.464036 TGCGCCTCCGATGTAATCTT 59.536 50.000 4.18 0.00 42.58 2.40
2202 2340 1.140816 GCGCCTCCGATGTAATCTTC 58.859 55.000 0.00 0.00 42.58 2.87
2203 2341 1.269831 GCGCCTCCGATGTAATCTTCT 60.270 52.381 0.00 0.00 42.58 2.85
2204 2342 2.667137 CGCCTCCGATGTAATCTTCTC 58.333 52.381 0.00 0.00 42.58 2.87
2205 2343 2.294791 CGCCTCCGATGTAATCTTCTCT 59.705 50.000 0.00 0.00 42.58 3.10
2206 2344 3.648009 GCCTCCGATGTAATCTTCTCTG 58.352 50.000 0.00 0.00 42.58 3.35
2207 2345 3.068873 GCCTCCGATGTAATCTTCTCTGT 59.931 47.826 0.00 0.00 42.58 3.41
2208 2346 4.615949 CCTCCGATGTAATCTTCTCTGTG 58.384 47.826 0.00 0.00 42.58 3.66
2209 2347 4.098654 CCTCCGATGTAATCTTCTCTGTGT 59.901 45.833 0.00 0.00 42.58 3.72
2210 2348 5.299531 CCTCCGATGTAATCTTCTCTGTGTA 59.700 44.000 0.00 0.00 42.58 2.90
2211 2349 6.015856 CCTCCGATGTAATCTTCTCTGTGTAT 60.016 42.308 0.00 0.00 42.58 2.29
2212 2350 7.348080 TCCGATGTAATCTTCTCTGTGTATT 57.652 36.000 0.00 0.00 42.58 1.89
2213 2351 7.782049 TCCGATGTAATCTTCTCTGTGTATTT 58.218 34.615 0.00 0.00 42.58 1.40
2214 2352 8.909923 TCCGATGTAATCTTCTCTGTGTATTTA 58.090 33.333 0.00 0.00 42.58 1.40
2215 2353 9.529325 CCGATGTAATCTTCTCTGTGTATTTAA 57.471 33.333 0.00 0.00 42.58 1.52
2236 2374 4.814294 GTACGCGTCCCTGCCAGG 62.814 72.222 18.63 2.91 34.30 4.45
2240 2378 4.785453 GCGTCCCTGCCAGGAAGG 62.785 72.222 13.74 6.48 37.67 3.46
2249 2387 4.963878 CCAGGAAGGCATACGCTT 57.036 55.556 0.00 0.00 38.60 4.68
2250 2388 2.695314 CCAGGAAGGCATACGCTTC 58.305 57.895 0.00 0.00 38.60 3.86
2251 2389 0.815615 CCAGGAAGGCATACGCTTCC 60.816 60.000 9.90 9.90 41.74 3.46
2252 2390 0.107703 CAGGAAGGCATACGCTTCCA 60.108 55.000 17.62 0.00 42.85 3.53
2253 2391 0.107654 AGGAAGGCATACGCTTCCAC 60.108 55.000 17.62 0.00 42.85 4.02
2254 2392 1.429148 GGAAGGCATACGCTTCCACG 61.429 60.000 12.31 0.00 41.39 4.94
2255 2393 2.036764 GAAGGCATACGCTTCCACGC 62.037 60.000 0.00 0.00 38.60 5.34
2256 2394 2.511600 GGCATACGCTTCCACGCT 60.512 61.111 0.00 0.00 38.60 5.07
2257 2395 2.106683 GGCATACGCTTCCACGCTT 61.107 57.895 0.00 0.00 38.60 4.68
2258 2396 1.644786 GGCATACGCTTCCACGCTTT 61.645 55.000 0.00 0.00 38.60 3.51
2259 2397 0.168128 GCATACGCTTCCACGCTTTT 59.832 50.000 0.00 0.00 36.19 2.27
2260 2398 1.401018 GCATACGCTTCCACGCTTTTT 60.401 47.619 0.00 0.00 36.19 1.94
2261 2399 2.505866 CATACGCTTCCACGCTTTTTC 58.494 47.619 0.00 0.00 36.19 2.29
2262 2400 1.873698 TACGCTTCCACGCTTTTTCT 58.126 45.000 0.00 0.00 36.19 2.52
2263 2401 1.021968 ACGCTTCCACGCTTTTTCTT 58.978 45.000 0.00 0.00 36.19 2.52
2264 2402 1.002792 ACGCTTCCACGCTTTTTCTTC 60.003 47.619 0.00 0.00 36.19 2.87
2265 2403 1.264288 CGCTTCCACGCTTTTTCTTCT 59.736 47.619 0.00 0.00 0.00 2.85
2266 2404 2.287009 CGCTTCCACGCTTTTTCTTCTT 60.287 45.455 0.00 0.00 0.00 2.52
2267 2405 3.300857 GCTTCCACGCTTTTTCTTCTTC 58.699 45.455 0.00 0.00 0.00 2.87
2268 2406 3.003793 GCTTCCACGCTTTTTCTTCTTCT 59.996 43.478 0.00 0.00 0.00 2.85
2269 2407 4.498177 GCTTCCACGCTTTTTCTTCTTCTT 60.498 41.667 0.00 0.00 0.00 2.52
2270 2408 5.576447 TTCCACGCTTTTTCTTCTTCTTT 57.424 34.783 0.00 0.00 0.00 2.52
2271 2409 5.169836 TCCACGCTTTTTCTTCTTCTTTC 57.830 39.130 0.00 0.00 0.00 2.62
2272 2410 4.638421 TCCACGCTTTTTCTTCTTCTTTCA 59.362 37.500 0.00 0.00 0.00 2.69
2273 2411 5.299279 TCCACGCTTTTTCTTCTTCTTTCAT 59.701 36.000 0.00 0.00 0.00 2.57
2274 2412 5.400485 CCACGCTTTTTCTTCTTCTTTCATG 59.600 40.000 0.00 0.00 0.00 3.07
2275 2413 5.400485 CACGCTTTTTCTTCTTCTTTCATGG 59.600 40.000 0.00 0.00 0.00 3.66
2276 2414 5.067805 ACGCTTTTTCTTCTTCTTTCATGGT 59.932 36.000 0.00 0.00 0.00 3.55
2277 2415 6.262273 ACGCTTTTTCTTCTTCTTTCATGGTA 59.738 34.615 0.00 0.00 0.00 3.25
2278 2416 7.040409 ACGCTTTTTCTTCTTCTTTCATGGTAT 60.040 33.333 0.00 0.00 0.00 2.73
2279 2417 7.483059 CGCTTTTTCTTCTTCTTTCATGGTATC 59.517 37.037 0.00 0.00 0.00 2.24
2280 2418 8.299570 GCTTTTTCTTCTTCTTTCATGGTATCA 58.700 33.333 0.00 0.00 0.00 2.15
2281 2419 9.837525 CTTTTTCTTCTTCTTTCATGGTATCAG 57.162 33.333 0.00 0.00 0.00 2.90
2282 2420 9.573166 TTTTTCTTCTTCTTTCATGGTATCAGA 57.427 29.630 0.00 0.00 0.00 3.27
2283 2421 8.783833 TTTCTTCTTCTTTCATGGTATCAGAG 57.216 34.615 0.00 0.00 0.00 3.35
2284 2422 6.344500 TCTTCTTCTTTCATGGTATCAGAGC 58.656 40.000 0.00 0.00 0.00 4.09
2285 2423 5.946942 TCTTCTTTCATGGTATCAGAGCT 57.053 39.130 0.00 0.00 0.00 4.09
2286 2424 5.668471 TCTTCTTTCATGGTATCAGAGCTG 58.332 41.667 0.00 0.00 0.00 4.24
2287 2425 3.801698 TCTTTCATGGTATCAGAGCTGC 58.198 45.455 0.00 0.00 0.00 5.25
2288 2426 2.627515 TTCATGGTATCAGAGCTGCC 57.372 50.000 0.00 0.00 0.00 4.85
2289 2427 0.761187 TCATGGTATCAGAGCTGCCC 59.239 55.000 0.00 0.00 0.00 5.36
2290 2428 0.763652 CATGGTATCAGAGCTGCCCT 59.236 55.000 0.00 0.00 0.00 5.19
2291 2429 1.055040 ATGGTATCAGAGCTGCCCTC 58.945 55.000 0.00 0.00 41.07 4.30
2292 2430 1.365633 GGTATCAGAGCTGCCCTCG 59.634 63.158 0.00 0.00 45.54 4.63
2293 2431 1.109920 GGTATCAGAGCTGCCCTCGA 61.110 60.000 0.00 0.00 45.54 4.04
2294 2432 0.747255 GTATCAGAGCTGCCCTCGAA 59.253 55.000 0.00 0.00 45.54 3.71
2295 2433 0.747255 TATCAGAGCTGCCCTCGAAC 59.253 55.000 0.00 0.00 45.54 3.95
2296 2434 0.975040 ATCAGAGCTGCCCTCGAACT 60.975 55.000 0.00 0.00 45.54 3.01
2297 2435 1.153667 CAGAGCTGCCCTCGAACTC 60.154 63.158 0.00 0.00 45.54 3.01
2298 2436 1.607756 AGAGCTGCCCTCGAACTCA 60.608 57.895 0.00 0.00 45.54 3.41
2299 2437 0.975040 AGAGCTGCCCTCGAACTCAT 60.975 55.000 0.00 0.00 45.54 2.90
2300 2438 0.529555 GAGCTGCCCTCGAACTCATC 60.530 60.000 0.00 0.00 0.00 2.92
2301 2439 1.522580 GCTGCCCTCGAACTCATCC 60.523 63.158 0.00 0.00 0.00 3.51
2302 2440 1.900351 CTGCCCTCGAACTCATCCA 59.100 57.895 0.00 0.00 0.00 3.41
2303 2441 0.467384 CTGCCCTCGAACTCATCCAT 59.533 55.000 0.00 0.00 0.00 3.41
2304 2442 0.178767 TGCCCTCGAACTCATCCATG 59.821 55.000 0.00 0.00 0.00 3.66
2305 2443 0.465705 GCCCTCGAACTCATCCATGA 59.534 55.000 0.00 0.00 35.16 3.07
2306 2444 1.134401 GCCCTCGAACTCATCCATGAA 60.134 52.381 0.00 0.00 36.18 2.57
2307 2445 2.831333 CCCTCGAACTCATCCATGAAG 58.169 52.381 0.00 0.00 36.18 3.02
2308 2446 2.432146 CCCTCGAACTCATCCATGAAGA 59.568 50.000 0.00 0.00 36.18 2.87
2309 2447 3.452474 CCTCGAACTCATCCATGAAGAC 58.548 50.000 0.00 0.00 36.18 3.01
2310 2448 3.118992 CCTCGAACTCATCCATGAAGACA 60.119 47.826 0.00 0.00 36.18 3.41
2311 2449 4.442612 CCTCGAACTCATCCATGAAGACAT 60.443 45.833 0.00 0.00 36.18 3.06
2312 2450 4.686972 TCGAACTCATCCATGAAGACATC 58.313 43.478 0.00 0.00 36.18 3.06
2313 2451 4.403752 TCGAACTCATCCATGAAGACATCT 59.596 41.667 0.00 0.00 36.18 2.90
2314 2452 5.105187 TCGAACTCATCCATGAAGACATCTT 60.105 40.000 0.00 0.00 39.23 2.40
2328 2466 5.527026 AGACATCTTCAAATTCCTTCCCT 57.473 39.130 0.00 0.00 0.00 4.20
2329 2467 5.259632 AGACATCTTCAAATTCCTTCCCTG 58.740 41.667 0.00 0.00 0.00 4.45
2330 2468 5.003096 ACATCTTCAAATTCCTTCCCTGT 57.997 39.130 0.00 0.00 0.00 4.00
2331 2469 5.012893 ACATCTTCAAATTCCTTCCCTGTC 58.987 41.667 0.00 0.00 0.00 3.51
2332 2470 5.222213 ACATCTTCAAATTCCTTCCCTGTCT 60.222 40.000 0.00 0.00 0.00 3.41
2333 2471 4.911390 TCTTCAAATTCCTTCCCTGTCTC 58.089 43.478 0.00 0.00 0.00 3.36
2334 2472 3.334583 TCAAATTCCTTCCCTGTCTCG 57.665 47.619 0.00 0.00 0.00 4.04
2335 2473 1.740025 CAAATTCCTTCCCTGTCTCGC 59.260 52.381 0.00 0.00 0.00 5.03
2336 2474 0.253327 AATTCCTTCCCTGTCTCGCC 59.747 55.000 0.00 0.00 0.00 5.54
2337 2475 0.909610 ATTCCTTCCCTGTCTCGCCA 60.910 55.000 0.00 0.00 0.00 5.69
2338 2476 0.909610 TTCCTTCCCTGTCTCGCCAT 60.910 55.000 0.00 0.00 0.00 4.40
2339 2477 0.909610 TCCTTCCCTGTCTCGCCATT 60.910 55.000 0.00 0.00 0.00 3.16
2340 2478 0.462759 CCTTCCCTGTCTCGCCATTC 60.463 60.000 0.00 0.00 0.00 2.67
2341 2479 0.807667 CTTCCCTGTCTCGCCATTCG 60.808 60.000 0.00 0.00 40.15 3.34
2342 2480 2.852495 TTCCCTGTCTCGCCATTCGC 62.852 60.000 0.00 0.00 38.27 4.70
2343 2481 2.185350 CCTGTCTCGCCATTCGCT 59.815 61.111 0.00 0.00 38.27 4.93
2344 2482 2.169789 CCTGTCTCGCCATTCGCTG 61.170 63.158 0.00 0.00 38.27 5.18
2345 2483 1.153765 CTGTCTCGCCATTCGCTGA 60.154 57.895 0.00 0.00 38.27 4.26
2346 2484 1.416813 CTGTCTCGCCATTCGCTGAC 61.417 60.000 0.00 0.00 39.73 3.51
2347 2485 2.202610 TCTCGCCATTCGCTGACG 60.203 61.111 0.00 0.00 42.01 4.35
2348 2486 3.918220 CTCGCCATTCGCTGACGC 61.918 66.667 0.00 0.00 39.84 5.19
2359 2497 4.056125 CTGACGCCGCCACAGAGA 62.056 66.667 5.79 0.00 34.07 3.10
2360 2498 3.573772 CTGACGCCGCCACAGAGAA 62.574 63.158 5.79 0.00 34.07 2.87
2361 2499 2.357034 GACGCCGCCACAGAGAAA 60.357 61.111 0.00 0.00 0.00 2.52
2362 2500 2.665185 ACGCCGCCACAGAGAAAC 60.665 61.111 0.00 0.00 0.00 2.78
2363 2501 2.357517 CGCCGCCACAGAGAAACT 60.358 61.111 0.00 0.00 0.00 2.66
2364 2502 2.383527 CGCCGCCACAGAGAAACTC 61.384 63.158 0.00 0.00 0.00 3.01
2365 2503 1.301716 GCCGCCACAGAGAAACTCA 60.302 57.895 0.00 0.00 32.06 3.41
2366 2504 1.294659 GCCGCCACAGAGAAACTCAG 61.295 60.000 0.00 0.00 32.06 3.35
2367 2505 1.294659 CCGCCACAGAGAAACTCAGC 61.295 60.000 0.00 0.00 32.06 4.26
2368 2506 0.601046 CGCCACAGAGAAACTCAGCA 60.601 55.000 0.00 0.00 32.06 4.41
2369 2507 1.597742 GCCACAGAGAAACTCAGCAA 58.402 50.000 0.00 0.00 32.06 3.91
2370 2508 1.534595 GCCACAGAGAAACTCAGCAAG 59.465 52.381 0.00 0.00 32.06 4.01
2371 2509 2.149578 CCACAGAGAAACTCAGCAAGG 58.850 52.381 0.00 0.00 32.06 3.61
2372 2510 2.149578 CACAGAGAAACTCAGCAAGGG 58.850 52.381 0.00 0.00 32.06 3.95
2373 2511 1.163554 CAGAGAAACTCAGCAAGGGC 58.836 55.000 0.00 0.00 41.61 5.19
2374 2512 0.767375 AGAGAAACTCAGCAAGGGCA 59.233 50.000 0.00 0.00 44.61 5.36
2375 2513 1.143684 AGAGAAACTCAGCAAGGGCAA 59.856 47.619 0.00 0.00 44.61 4.52
2376 2514 2.165998 GAGAAACTCAGCAAGGGCAAT 58.834 47.619 0.00 0.00 44.61 3.56
2615 2753 2.493713 GATGCAGATCGACGTAACCT 57.506 50.000 0.00 0.00 0.00 3.50
2616 2754 2.386249 GATGCAGATCGACGTAACCTC 58.614 52.381 0.00 0.00 0.00 3.85
2617 2755 0.098200 TGCAGATCGACGTAACCTCG 59.902 55.000 0.00 0.00 0.00 4.63
2618 2756 0.098376 GCAGATCGACGTAACCTCGT 59.902 55.000 0.00 0.00 46.88 4.18
2626 2764 0.172803 ACGTAACCTCGTCTGATGGC 59.827 55.000 0.00 0.00 40.04 4.40
2627 2765 0.172578 CGTAACCTCGTCTGATGGCA 59.827 55.000 0.00 0.00 0.00 4.92
2628 2766 1.403647 CGTAACCTCGTCTGATGGCAA 60.404 52.381 0.00 0.00 0.00 4.52
2629 2767 2.271800 GTAACCTCGTCTGATGGCAAG 58.728 52.381 0.00 0.00 0.00 4.01
2630 2768 0.976641 AACCTCGTCTGATGGCAAGA 59.023 50.000 0.00 0.00 0.00 3.02
2631 2769 0.247736 ACCTCGTCTGATGGCAAGAC 59.752 55.000 8.91 8.91 0.00 3.01
2632 2770 0.460987 CCTCGTCTGATGGCAAGACC 60.461 60.000 12.48 0.00 39.84 3.85
2640 2778 4.243008 TGGCAAGACCACGGCGAA 62.243 61.111 16.62 0.00 46.36 4.70
2641 2779 3.423154 GGCAAGACCACGGCGAAG 61.423 66.667 16.62 6.64 38.86 3.79
2642 2780 3.423154 GCAAGACCACGGCGAAGG 61.423 66.667 16.62 17.86 0.00 3.46
2653 2791 4.404654 GCGAAGGCAGCAAACCCG 62.405 66.667 0.00 0.00 39.62 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.916358 GAGGGAAGGCCATCATGG 57.084 61.111 10.67 0.00 44.29 3.66
133 134 4.113354 CCTAAACGAGCTCTCCATACAAC 58.887 47.826 12.85 0.00 0.00 3.32
161 181 7.038302 ACGGGATAGAGATGAAATTGGCTATAA 60.038 37.037 0.00 0.00 0.00 0.98
167 187 4.067896 CCACGGGATAGAGATGAAATTGG 58.932 47.826 0.00 0.00 0.00 3.16
186 206 2.867647 GCAAACAATCTTTGGGCTCCAC 60.868 50.000 0.00 0.00 30.78 4.02
191 211 2.818130 TCAGCAAACAATCTTTGGGC 57.182 45.000 0.00 0.00 34.12 5.36
192 212 3.258872 TGGATCAGCAAACAATCTTTGGG 59.741 43.478 0.00 0.00 34.12 4.12
193 213 4.021719 AGTGGATCAGCAAACAATCTTTGG 60.022 41.667 0.00 0.00 34.12 3.28
223 250 1.202087 CCGTCTCTCGATCTGTCACAC 60.202 57.143 0.00 0.00 42.86 3.82
226 253 1.377366 GCCCGTCTCTCGATCTGTCA 61.377 60.000 0.00 0.00 42.86 3.58
241 268 1.082104 GTGAAAACAAGCGAGCCCG 60.082 57.895 0.00 0.00 39.16 6.13
290 317 8.902806 CAGACAAATATAAATAGTTTGAGGGCA 58.097 33.333 4.31 0.00 36.58 5.36
310 337 3.181440 ACTCAAAGGGCTTGATCAGACAA 60.181 43.478 0.00 0.00 43.20 3.18
318 345 5.763204 CACTAACTAAACTCAAAGGGCTTGA 59.237 40.000 0.00 0.00 41.93 3.02
411 438 4.759516 TTCTAAAACCTTGGCGAATCAC 57.240 40.909 0.00 0.00 0.00 3.06
624 673 7.996644 ACGTATGTCATGGGGATTAAAGTAATT 59.003 33.333 0.00 0.00 0.00 1.40
629 679 5.699458 GGTACGTATGTCATGGGGATTAAAG 59.301 44.000 0.00 0.00 0.00 1.85
640 690 3.516300 TCTTTGGGTGGTACGTATGTCAT 59.484 43.478 0.00 0.00 0.00 3.06
668 724 7.381408 TGTTCACTTCAGAAACTACGTATTGAG 59.619 37.037 0.00 0.00 0.00 3.02
673 729 4.971830 CGTGTTCACTTCAGAAACTACGTA 59.028 41.667 0.00 0.00 32.17 3.57
674 730 3.795101 CGTGTTCACTTCAGAAACTACGT 59.205 43.478 0.00 0.00 32.17 3.57
675 731 3.795101 ACGTGTTCACTTCAGAAACTACG 59.205 43.478 0.00 0.00 37.49 3.51
676 732 4.550255 GCACGTGTTCACTTCAGAAACTAC 60.550 45.833 18.38 0.00 0.00 2.73
760 819 7.577807 GCAAGTTAGAGTCTAGTCAAGGATGAA 60.578 40.741 0.00 0.00 37.30 2.57
854 935 4.262207 CCAGTCAGTCAGTCACTACACAAT 60.262 45.833 0.00 0.00 32.21 2.71
864 945 4.021544 AGAGTTTGATCCAGTCAGTCAGTC 60.022 45.833 0.00 0.00 38.29 3.51
865 946 3.900601 AGAGTTTGATCCAGTCAGTCAGT 59.099 43.478 0.00 0.00 38.29 3.41
866 947 4.493547 GAGAGTTTGATCCAGTCAGTCAG 58.506 47.826 0.00 0.00 38.29 3.51
867 948 3.259374 GGAGAGTTTGATCCAGTCAGTCA 59.741 47.826 0.00 0.00 38.29 3.41
868 949 3.513515 AGGAGAGTTTGATCCAGTCAGTC 59.486 47.826 0.00 0.00 38.29 3.51
869 950 3.513515 GAGGAGAGTTTGATCCAGTCAGT 59.486 47.826 0.00 0.00 38.29 3.41
870 951 3.768757 AGAGGAGAGTTTGATCCAGTCAG 59.231 47.826 0.00 0.00 38.29 3.51
871 952 3.784178 AGAGGAGAGTTTGATCCAGTCA 58.216 45.455 0.00 0.00 38.12 3.41
938 1056 0.322816 TTGAGGCCGTACGGTACTCT 60.323 55.000 37.23 28.34 39.97 3.24
939 1057 0.100146 CTTGAGGCCGTACGGTACTC 59.900 60.000 34.53 34.53 39.83 2.59
940 1058 0.322816 TCTTGAGGCCGTACGGTACT 60.323 55.000 33.34 29.55 37.65 2.73
941 1059 0.100146 CTCTTGAGGCCGTACGGTAC 59.900 60.000 33.34 25.76 37.65 3.34
960 1078 5.591099 ACTTGAAAAATGTGTGTGATCCAC 58.409 37.500 7.22 7.22 44.78 4.02
962 1080 6.970484 AGTACTTGAAAAATGTGTGTGATCC 58.030 36.000 0.00 0.00 0.00 3.36
977 1095 5.948588 TGGCGTACGTTTATAGTACTTGAA 58.051 37.500 17.90 0.00 41.51 2.69
978 1096 5.559427 TGGCGTACGTTTATAGTACTTGA 57.441 39.130 17.90 0.00 41.51 3.02
979 1097 5.174398 CCATGGCGTACGTTTATAGTACTTG 59.826 44.000 17.90 5.03 41.51 3.16
980 1098 5.284079 CCATGGCGTACGTTTATAGTACTT 58.716 41.667 17.90 0.00 41.51 2.24
981 1099 4.794003 GCCATGGCGTACGTTTATAGTACT 60.794 45.833 23.48 0.00 41.51 2.73
982 1100 3.426525 GCCATGGCGTACGTTTATAGTAC 59.573 47.826 23.48 0.00 40.59 2.73
983 1101 3.067883 TGCCATGGCGTACGTTTATAGTA 59.932 43.478 30.87 5.86 45.51 1.82
984 1102 2.159071 TGCCATGGCGTACGTTTATAGT 60.159 45.455 30.87 0.00 45.51 2.12
985 1103 2.475818 TGCCATGGCGTACGTTTATAG 58.524 47.619 30.87 3.69 45.51 1.31
986 1104 2.598686 TGCCATGGCGTACGTTTATA 57.401 45.000 30.87 7.13 45.51 0.98
987 1105 1.740297 TTGCCATGGCGTACGTTTAT 58.260 45.000 30.87 6.20 45.51 1.40
988 1106 1.520494 TTTGCCATGGCGTACGTTTA 58.480 45.000 30.87 8.74 45.51 2.01
989 1107 0.669077 TTTTGCCATGGCGTACGTTT 59.331 45.000 30.87 0.00 45.51 3.60
990 1108 0.239879 CTTTTGCCATGGCGTACGTT 59.760 50.000 30.87 0.00 45.51 3.99
991 1109 1.873165 CTTTTGCCATGGCGTACGT 59.127 52.632 30.87 0.00 45.51 3.57
992 1110 1.514014 GCTTTTGCCATGGCGTACG 60.514 57.895 30.87 19.73 45.51 3.67
993 1111 4.476361 GCTTTTGCCATGGCGTAC 57.524 55.556 30.87 14.94 45.51 3.67
1008 1126 1.685421 GGAGAGGAGGAGCACAGCT 60.685 63.158 0.00 0.00 43.88 4.24
1009 1127 2.730524 GGGAGAGGAGGAGCACAGC 61.731 68.421 0.00 0.00 0.00 4.40
1010 1128 1.001503 AGGGAGAGGAGGAGCACAG 59.998 63.158 0.00 0.00 0.00 3.66
1040 1170 1.024271 GACACACCAAAAGAGCAGCA 58.976 50.000 0.00 0.00 0.00 4.41
1041 1171 0.040958 CGACACACCAAAAGAGCAGC 60.041 55.000 0.00 0.00 0.00 5.25
1042 1172 0.040958 GCGACACACCAAAAGAGCAG 60.041 55.000 0.00 0.00 0.00 4.24
1397 1527 1.235724 GTTGGTGTAGACCCTGTTGC 58.764 55.000 6.59 0.00 42.34 4.17
1693 1823 0.841289 AGTTCAAGTTCAACCCCGGA 59.159 50.000 0.73 0.00 0.00 5.14
1727 1857 0.605589 AGTCGGAGAACAGCAGGAAG 59.394 55.000 0.00 0.00 39.69 3.46
1728 1858 1.048601 AAGTCGGAGAACAGCAGGAA 58.951 50.000 0.00 0.00 39.69 3.36
1729 1859 0.318441 CAAGTCGGAGAACAGCAGGA 59.682 55.000 0.00 0.00 39.69 3.86
1730 1860 0.318441 TCAAGTCGGAGAACAGCAGG 59.682 55.000 0.00 0.00 39.69 4.85
1731 1861 2.376808 ATCAAGTCGGAGAACAGCAG 57.623 50.000 0.00 0.00 39.69 4.24
1734 1864 6.787085 AAAGTAAATCAAGTCGGAGAACAG 57.213 37.500 0.00 0.00 39.69 3.16
1954 2092 9.974980 ACGAATTAGGTGTTTGTTTCATATTTT 57.025 25.926 0.00 0.00 0.00 1.82
1971 2109 7.490000 AGTACCTGTATCTCAAACGAATTAGG 58.510 38.462 0.00 0.00 0.00 2.69
2023 2161 9.681062 ACAGCCTATACTTTAACACATACAATT 57.319 29.630 0.00 0.00 0.00 2.32
2025 2163 9.590451 GTACAGCCTATACTTTAACACATACAA 57.410 33.333 0.00 0.00 0.00 2.41
2026 2164 8.974238 AGTACAGCCTATACTTTAACACATACA 58.026 33.333 0.00 0.00 28.03 2.29
2027 2165 9.813446 AAGTACAGCCTATACTTTAACACATAC 57.187 33.333 0.00 0.00 39.34 2.39
2028 2166 9.811995 CAAGTACAGCCTATACTTTAACACATA 57.188 33.333 0.00 0.00 40.18 2.29
2029 2167 8.319146 ACAAGTACAGCCTATACTTTAACACAT 58.681 33.333 0.00 0.00 40.18 3.21
2030 2168 7.673180 ACAAGTACAGCCTATACTTTAACACA 58.327 34.615 0.00 0.00 40.18 3.72
2031 2169 9.298774 CTACAAGTACAGCCTATACTTTAACAC 57.701 37.037 0.00 0.00 40.18 3.32
2032 2170 9.246670 TCTACAAGTACAGCCTATACTTTAACA 57.753 33.333 0.00 0.00 40.18 2.41
2035 2173 8.411683 GCTTCTACAAGTACAGCCTATACTTTA 58.588 37.037 0.00 0.00 40.18 1.85
2036 2174 7.266400 GCTTCTACAAGTACAGCCTATACTTT 58.734 38.462 0.00 0.00 40.18 2.66
2037 2175 6.459848 CGCTTCTACAAGTACAGCCTATACTT 60.460 42.308 0.00 0.00 42.35 2.24
2038 2176 5.008811 CGCTTCTACAAGTACAGCCTATACT 59.991 44.000 0.00 0.00 34.25 2.12
2039 2177 5.213675 CGCTTCTACAAGTACAGCCTATAC 58.786 45.833 0.00 0.00 31.45 1.47
2040 2178 4.885907 ACGCTTCTACAAGTACAGCCTATA 59.114 41.667 0.00 0.00 31.45 1.31
2041 2179 3.700038 ACGCTTCTACAAGTACAGCCTAT 59.300 43.478 0.00 0.00 31.45 2.57
2042 2180 3.087031 ACGCTTCTACAAGTACAGCCTA 58.913 45.455 0.00 0.00 31.45 3.93
2043 2181 1.893801 ACGCTTCTACAAGTACAGCCT 59.106 47.619 0.00 0.00 31.45 4.58
2044 2182 1.993370 CACGCTTCTACAAGTACAGCC 59.007 52.381 0.00 0.00 31.45 4.85
2045 2183 2.662156 GTCACGCTTCTACAAGTACAGC 59.338 50.000 0.00 0.00 31.45 4.40
2046 2184 3.897325 TGTCACGCTTCTACAAGTACAG 58.103 45.455 0.00 0.00 31.45 2.74
2047 2185 3.994204 TGTCACGCTTCTACAAGTACA 57.006 42.857 0.00 0.00 31.45 2.90
2048 2186 5.512082 CAGTATGTCACGCTTCTACAAGTAC 59.488 44.000 0.00 0.00 31.45 2.73
2049 2187 5.637809 CAGTATGTCACGCTTCTACAAGTA 58.362 41.667 0.00 0.00 31.45 2.24
2050 2188 4.486090 CAGTATGTCACGCTTCTACAAGT 58.514 43.478 0.00 0.00 31.45 3.16
2067 2205 6.753279 ACACGCAAATACATACGTAACAGTAT 59.247 34.615 0.00 6.15 36.91 2.12
2068 2206 6.033725 CACACGCAAATACATACGTAACAGTA 59.966 38.462 0.00 3.91 36.91 2.74
2069 2207 4.925054 ACACGCAAATACATACGTAACAGT 59.075 37.500 0.00 1.52 36.91 3.55
2070 2208 5.245105 CACACGCAAATACATACGTAACAG 58.755 41.667 0.00 0.00 36.91 3.16
2071 2209 4.434461 GCACACGCAAATACATACGTAACA 60.434 41.667 0.00 0.00 36.91 2.41
2072 2210 4.017271 GCACACGCAAATACATACGTAAC 58.983 43.478 0.00 0.00 36.91 2.50
2073 2211 3.241709 CGCACACGCAAATACATACGTAA 60.242 43.478 0.00 0.00 36.91 3.18
2074 2212 2.279397 CGCACACGCAAATACATACGTA 59.721 45.455 0.00 0.00 36.91 3.57
2075 2213 1.059979 CGCACACGCAAATACATACGT 59.940 47.619 0.00 0.00 39.78 3.57
2076 2214 1.059979 ACGCACACGCAAATACATACG 59.940 47.619 0.00 0.00 45.53 3.06
2077 2215 2.159761 ACACGCACACGCAAATACATAC 60.160 45.455 0.00 0.00 45.53 2.39
2078 2216 2.070028 ACACGCACACGCAAATACATA 58.930 42.857 0.00 0.00 45.53 2.29
2079 2217 0.871722 ACACGCACACGCAAATACAT 59.128 45.000 0.00 0.00 45.53 2.29
2080 2218 0.041751 CACACGCACACGCAAATACA 60.042 50.000 0.00 0.00 45.53 2.29
2081 2219 0.041663 ACACACGCACACGCAAATAC 60.042 50.000 0.00 0.00 45.53 1.89
2082 2220 1.499049 TACACACGCACACGCAAATA 58.501 45.000 0.00 0.00 45.53 1.40
2083 2221 0.871722 ATACACACGCACACGCAAAT 59.128 45.000 0.00 0.00 45.53 2.32
2084 2222 0.658368 AATACACACGCACACGCAAA 59.342 45.000 0.00 0.00 45.53 3.68
2085 2223 0.041751 CAATACACACGCACACGCAA 60.042 50.000 0.00 0.00 45.53 4.85
2086 2224 1.154814 ACAATACACACGCACACGCA 61.155 50.000 0.00 0.00 45.53 5.24
2087 2225 0.785378 TACAATACACACGCACACGC 59.215 50.000 0.00 0.00 45.53 5.34
2089 2227 4.433805 GCTAGTTACAATACACACGCACAC 60.434 45.833 0.00 0.00 0.00 3.82
2090 2228 3.676172 GCTAGTTACAATACACACGCACA 59.324 43.478 0.00 0.00 0.00 4.57
2091 2229 3.241552 CGCTAGTTACAATACACACGCAC 60.242 47.826 0.00 0.00 0.00 5.34
2092 2230 2.918600 CGCTAGTTACAATACACACGCA 59.081 45.455 0.00 0.00 0.00 5.24
2093 2231 2.284855 GCGCTAGTTACAATACACACGC 60.285 50.000 0.00 0.00 35.57 5.34
2094 2232 2.918600 TGCGCTAGTTACAATACACACG 59.081 45.455 9.73 0.00 0.00 4.49
2095 2233 3.306166 CCTGCGCTAGTTACAATACACAC 59.694 47.826 9.73 0.00 0.00 3.82
2096 2234 3.056393 ACCTGCGCTAGTTACAATACACA 60.056 43.478 9.73 0.00 0.00 3.72
2097 2235 3.518590 ACCTGCGCTAGTTACAATACAC 58.481 45.455 9.73 0.00 0.00 2.90
2098 2236 3.880047 ACCTGCGCTAGTTACAATACA 57.120 42.857 9.73 0.00 0.00 2.29
2099 2237 3.930848 ACAACCTGCGCTAGTTACAATAC 59.069 43.478 9.73 0.00 0.00 1.89
2100 2238 4.196626 ACAACCTGCGCTAGTTACAATA 57.803 40.909 9.73 0.00 0.00 1.90
2101 2239 3.053831 ACAACCTGCGCTAGTTACAAT 57.946 42.857 9.73 0.00 0.00 2.71
2102 2240 2.536761 ACAACCTGCGCTAGTTACAA 57.463 45.000 9.73 0.00 0.00 2.41
2103 2241 2.536761 AACAACCTGCGCTAGTTACA 57.463 45.000 9.73 0.00 0.00 2.41
2104 2242 3.582780 ACTAACAACCTGCGCTAGTTAC 58.417 45.455 9.73 0.00 0.00 2.50
2105 2243 3.947910 ACTAACAACCTGCGCTAGTTA 57.052 42.857 9.73 9.37 0.00 2.24
2106 2244 2.833631 ACTAACAACCTGCGCTAGTT 57.166 45.000 9.73 9.54 0.00 2.24
2107 2245 4.885907 TCTATACTAACAACCTGCGCTAGT 59.114 41.667 9.73 8.73 0.00 2.57
2108 2246 5.434352 TCTATACTAACAACCTGCGCTAG 57.566 43.478 9.73 4.25 0.00 3.42
2109 2247 5.533528 TGATCTATACTAACAACCTGCGCTA 59.466 40.000 9.73 0.00 0.00 4.26
2110 2248 4.341235 TGATCTATACTAACAACCTGCGCT 59.659 41.667 9.73 0.00 0.00 5.92
2111 2249 4.617959 TGATCTATACTAACAACCTGCGC 58.382 43.478 0.00 0.00 0.00 6.09
2112 2250 5.175856 GCTTGATCTATACTAACAACCTGCG 59.824 44.000 0.00 0.00 0.00 5.18
2113 2251 5.467063 GGCTTGATCTATACTAACAACCTGC 59.533 44.000 0.00 0.00 0.00 4.85
2114 2252 6.821388 AGGCTTGATCTATACTAACAACCTG 58.179 40.000 0.00 0.00 0.00 4.00
2115 2253 7.439108 AAGGCTTGATCTATACTAACAACCT 57.561 36.000 0.00 0.00 0.00 3.50
2116 2254 9.425577 GATAAGGCTTGATCTATACTAACAACC 57.574 37.037 10.69 0.00 0.00 3.77
2117 2255 9.425577 GGATAAGGCTTGATCTATACTAACAAC 57.574 37.037 10.69 0.00 0.00 3.32
2118 2256 8.304596 CGGATAAGGCTTGATCTATACTAACAA 58.695 37.037 10.69 0.00 0.00 2.83
2119 2257 7.093902 CCGGATAAGGCTTGATCTATACTAACA 60.094 40.741 10.69 0.00 0.00 2.41
2120 2258 7.093858 ACCGGATAAGGCTTGATCTATACTAAC 60.094 40.741 9.46 0.00 33.69 2.34
2121 2259 6.952358 ACCGGATAAGGCTTGATCTATACTAA 59.048 38.462 9.46 0.00 33.69 2.24
2122 2260 6.377429 CACCGGATAAGGCTTGATCTATACTA 59.623 42.308 9.46 0.00 33.69 1.82
2123 2261 5.186021 CACCGGATAAGGCTTGATCTATACT 59.814 44.000 9.46 0.00 33.69 2.12
2124 2262 5.047235 ACACCGGATAAGGCTTGATCTATAC 60.047 44.000 9.46 0.00 33.69 1.47
2125 2263 5.084519 ACACCGGATAAGGCTTGATCTATA 58.915 41.667 9.46 0.00 33.69 1.31
2126 2264 3.904339 ACACCGGATAAGGCTTGATCTAT 59.096 43.478 9.46 0.00 33.69 1.98
2127 2265 3.305720 ACACCGGATAAGGCTTGATCTA 58.694 45.455 9.46 0.00 33.69 1.98
2128 2266 2.119495 ACACCGGATAAGGCTTGATCT 58.881 47.619 9.46 0.00 33.69 2.75
2129 2267 2.622064 ACACCGGATAAGGCTTGATC 57.378 50.000 9.46 8.77 33.69 2.92
2130 2268 2.224305 GCTACACCGGATAAGGCTTGAT 60.224 50.000 9.46 0.00 33.69 2.57
2131 2269 1.138266 GCTACACCGGATAAGGCTTGA 59.862 52.381 9.46 0.00 33.69 3.02
2132 2270 1.139058 AGCTACACCGGATAAGGCTTG 59.861 52.381 9.46 0.00 33.69 4.01
2133 2271 1.497161 AGCTACACCGGATAAGGCTT 58.503 50.000 9.46 4.58 33.69 4.35
2134 2272 1.139058 CAAGCTACACCGGATAAGGCT 59.861 52.381 9.46 8.21 33.69 4.58
2135 2273 1.583054 CAAGCTACACCGGATAAGGC 58.417 55.000 9.46 5.73 33.69 4.35
2136 2274 1.760613 TCCAAGCTACACCGGATAAGG 59.239 52.381 9.46 0.00 37.30 2.69
2137 2275 2.431057 ACTCCAAGCTACACCGGATAAG 59.569 50.000 9.46 2.46 0.00 1.73
2138 2276 2.463752 ACTCCAAGCTACACCGGATAA 58.536 47.619 9.46 0.00 0.00 1.75
2139 2277 2.154567 ACTCCAAGCTACACCGGATA 57.845 50.000 9.46 0.00 0.00 2.59
2140 2278 2.032620 CTACTCCAAGCTACACCGGAT 58.967 52.381 9.46 0.00 0.00 4.18
2141 2279 1.471119 CTACTCCAAGCTACACCGGA 58.529 55.000 9.46 0.00 0.00 5.14
2142 2280 0.460311 CCTACTCCAAGCTACACCGG 59.540 60.000 0.00 0.00 0.00 5.28
2143 2281 0.460311 CCCTACTCCAAGCTACACCG 59.540 60.000 0.00 0.00 0.00 4.94
2144 2282 0.831307 CCCCTACTCCAAGCTACACC 59.169 60.000 0.00 0.00 0.00 4.16
2145 2283 0.178301 GCCCCTACTCCAAGCTACAC 59.822 60.000 0.00 0.00 0.00 2.90
2146 2284 0.252513 TGCCCCTACTCCAAGCTACA 60.253 55.000 0.00 0.00 0.00 2.74
2147 2285 0.909623 TTGCCCCTACTCCAAGCTAC 59.090 55.000 0.00 0.00 0.00 3.58
2148 2286 1.559682 CTTTGCCCCTACTCCAAGCTA 59.440 52.381 0.00 0.00 0.00 3.32
2149 2287 0.329596 CTTTGCCCCTACTCCAAGCT 59.670 55.000 0.00 0.00 0.00 3.74
2150 2288 0.328258 TCTTTGCCCCTACTCCAAGC 59.672 55.000 0.00 0.00 0.00 4.01
2151 2289 1.630878 AGTCTTTGCCCCTACTCCAAG 59.369 52.381 0.00 0.00 0.00 3.61
2152 2290 1.742308 AGTCTTTGCCCCTACTCCAA 58.258 50.000 0.00 0.00 0.00 3.53
2153 2291 1.351017 CAAGTCTTTGCCCCTACTCCA 59.649 52.381 0.00 0.00 0.00 3.86
2154 2292 2.115343 CAAGTCTTTGCCCCTACTCC 57.885 55.000 0.00 0.00 0.00 3.85
2164 2302 2.216940 CGCATGTTGTTGCAAGTCTTTG 59.783 45.455 0.00 0.00 42.91 2.77
2165 2303 2.462889 CGCATGTTGTTGCAAGTCTTT 58.537 42.857 0.00 0.00 42.91 2.52
2166 2304 1.865248 GCGCATGTTGTTGCAAGTCTT 60.865 47.619 0.30 0.00 42.91 3.01
2167 2305 0.318107 GCGCATGTTGTTGCAAGTCT 60.318 50.000 0.30 0.00 42.91 3.24
2168 2306 1.277495 GGCGCATGTTGTTGCAAGTC 61.277 55.000 10.83 0.00 42.91 3.01
2169 2307 1.300080 GGCGCATGTTGTTGCAAGT 60.300 52.632 10.83 0.00 42.91 3.16
2170 2308 1.005294 GAGGCGCATGTTGTTGCAAG 61.005 55.000 10.83 0.00 42.91 4.01
2171 2309 1.007502 GAGGCGCATGTTGTTGCAA 60.008 52.632 10.83 0.00 42.91 4.08
2172 2310 2.644418 GAGGCGCATGTTGTTGCA 59.356 55.556 10.83 0.00 42.91 4.08
2173 2311 2.126346 GGAGGCGCATGTTGTTGC 60.126 61.111 10.83 0.00 39.29 4.17
2174 2312 1.647545 ATCGGAGGCGCATGTTGTTG 61.648 55.000 10.83 0.00 0.00 3.33
2175 2313 1.377202 ATCGGAGGCGCATGTTGTT 60.377 52.632 10.83 0.00 0.00 2.83
2176 2314 2.108514 CATCGGAGGCGCATGTTGT 61.109 57.895 10.83 0.00 0.00 3.32
2177 2315 0.809636 TACATCGGAGGCGCATGTTG 60.810 55.000 14.51 2.71 32.88 3.33
2178 2316 0.107897 TTACATCGGAGGCGCATGTT 60.108 50.000 14.51 0.00 32.88 2.71
2179 2317 0.106708 ATTACATCGGAGGCGCATGT 59.893 50.000 10.83 12.73 35.00 3.21
2180 2318 0.792640 GATTACATCGGAGGCGCATG 59.207 55.000 10.83 6.40 0.00 4.06
2181 2319 0.681733 AGATTACATCGGAGGCGCAT 59.318 50.000 10.83 0.00 0.00 4.73
2182 2320 0.464036 AAGATTACATCGGAGGCGCA 59.536 50.000 10.83 0.00 0.00 6.09
2183 2321 1.140816 GAAGATTACATCGGAGGCGC 58.859 55.000 0.00 0.00 0.00 6.53
2184 2322 2.294791 AGAGAAGATTACATCGGAGGCG 59.705 50.000 0.00 0.00 0.00 5.52
2185 2323 3.068873 ACAGAGAAGATTACATCGGAGGC 59.931 47.826 0.00 0.00 0.00 4.70
2186 2324 4.098654 ACACAGAGAAGATTACATCGGAGG 59.901 45.833 0.00 0.00 0.00 4.30
2187 2325 5.255710 ACACAGAGAAGATTACATCGGAG 57.744 43.478 0.00 0.00 0.00 4.63
2188 2326 6.961360 ATACACAGAGAAGATTACATCGGA 57.039 37.500 0.00 0.00 0.00 4.55
2189 2327 9.529325 TTAAATACACAGAGAAGATTACATCGG 57.471 33.333 0.00 0.00 0.00 4.18
2219 2357 4.814294 CCTGGCAGGGACGCGTAC 62.814 72.222 26.34 14.70 0.00 3.67
2223 2361 4.785453 CCTTCCTGGCAGGGACGC 62.785 72.222 32.23 0.00 35.59 5.19
2232 2370 0.815615 GGAAGCGTATGCCTTCCTGG 60.816 60.000 21.43 0.00 44.31 4.45
2233 2371 0.107703 TGGAAGCGTATGCCTTCCTG 60.108 55.000 25.45 0.00 43.22 3.86
2234 2372 0.107654 GTGGAAGCGTATGCCTTCCT 60.108 55.000 25.45 0.88 43.22 3.36
2235 2373 1.429148 CGTGGAAGCGTATGCCTTCC 61.429 60.000 21.71 21.71 43.17 3.46
2236 2374 2.006772 CGTGGAAGCGTATGCCTTC 58.993 57.895 2.51 6.90 44.31 3.46
2237 2375 2.106683 GCGTGGAAGCGTATGCCTT 61.107 57.895 2.51 0.00 44.31 4.35
2238 2376 2.511600 GCGTGGAAGCGTATGCCT 60.512 61.111 2.51 0.00 44.31 4.75
2239 2377 1.644786 AAAGCGTGGAAGCGTATGCC 61.645 55.000 2.51 0.00 44.31 4.40
2240 2378 0.168128 AAAAGCGTGGAAGCGTATGC 59.832 50.000 0.00 0.00 43.00 3.14
2241 2379 2.159627 AGAAAAAGCGTGGAAGCGTATG 59.840 45.455 0.00 0.00 43.00 2.39
2242 2380 2.423577 AGAAAAAGCGTGGAAGCGTAT 58.576 42.857 0.00 0.00 43.00 3.06
2243 2381 1.873698 AGAAAAAGCGTGGAAGCGTA 58.126 45.000 0.00 0.00 43.00 4.42
2244 2382 1.002792 GAAGAAAAAGCGTGGAAGCGT 60.003 47.619 0.00 0.00 43.00 5.07
2245 2383 1.264288 AGAAGAAAAAGCGTGGAAGCG 59.736 47.619 0.00 0.00 43.00 4.68
2246 2384 3.003793 AGAAGAAGAAAAAGCGTGGAAGC 59.996 43.478 0.00 0.00 37.41 3.86
2247 2385 4.820284 AGAAGAAGAAAAAGCGTGGAAG 57.180 40.909 0.00 0.00 0.00 3.46
2248 2386 5.124776 TGAAAGAAGAAGAAAAAGCGTGGAA 59.875 36.000 0.00 0.00 0.00 3.53
2249 2387 4.638421 TGAAAGAAGAAGAAAAAGCGTGGA 59.362 37.500 0.00 0.00 0.00 4.02
2250 2388 4.920376 TGAAAGAAGAAGAAAAAGCGTGG 58.080 39.130 0.00 0.00 0.00 4.94
2251 2389 5.400485 CCATGAAAGAAGAAGAAAAAGCGTG 59.600 40.000 0.00 0.00 0.00 5.34
2252 2390 5.067805 ACCATGAAAGAAGAAGAAAAAGCGT 59.932 36.000 0.00 0.00 0.00 5.07
2253 2391 5.523369 ACCATGAAAGAAGAAGAAAAAGCG 58.477 37.500 0.00 0.00 0.00 4.68
2254 2392 8.299570 TGATACCATGAAAGAAGAAGAAAAAGC 58.700 33.333 0.00 0.00 0.00 3.51
2255 2393 9.837525 CTGATACCATGAAAGAAGAAGAAAAAG 57.162 33.333 0.00 0.00 0.00 2.27
2256 2394 9.573166 TCTGATACCATGAAAGAAGAAGAAAAA 57.427 29.630 0.00 0.00 0.00 1.94
2257 2395 9.224267 CTCTGATACCATGAAAGAAGAAGAAAA 57.776 33.333 0.00 0.00 0.00 2.29
2258 2396 7.335422 GCTCTGATACCATGAAAGAAGAAGAAA 59.665 37.037 0.00 0.00 0.00 2.52
2259 2397 6.820656 GCTCTGATACCATGAAAGAAGAAGAA 59.179 38.462 0.00 0.00 0.00 2.52
2260 2398 6.155910 AGCTCTGATACCATGAAAGAAGAAGA 59.844 38.462 0.00 0.00 0.00 2.87
2261 2399 6.258287 CAGCTCTGATACCATGAAAGAAGAAG 59.742 42.308 0.00 0.00 0.00 2.85
2262 2400 6.111382 CAGCTCTGATACCATGAAAGAAGAA 58.889 40.000 0.00 0.00 0.00 2.52
2263 2401 5.668471 CAGCTCTGATACCATGAAAGAAGA 58.332 41.667 0.00 0.00 0.00 2.87
2264 2402 4.272991 GCAGCTCTGATACCATGAAAGAAG 59.727 45.833 0.29 0.00 0.00 2.85
2265 2403 4.194640 GCAGCTCTGATACCATGAAAGAA 58.805 43.478 0.29 0.00 0.00 2.52
2266 2404 3.432749 GGCAGCTCTGATACCATGAAAGA 60.433 47.826 0.29 0.00 0.00 2.52
2267 2405 2.877168 GGCAGCTCTGATACCATGAAAG 59.123 50.000 0.29 0.00 0.00 2.62
2268 2406 2.421952 GGGCAGCTCTGATACCATGAAA 60.422 50.000 0.29 0.00 0.00 2.69
2269 2407 1.141657 GGGCAGCTCTGATACCATGAA 59.858 52.381 0.29 0.00 0.00 2.57
2270 2408 0.761187 GGGCAGCTCTGATACCATGA 59.239 55.000 0.29 0.00 0.00 3.07
2271 2409 0.763652 AGGGCAGCTCTGATACCATG 59.236 55.000 0.00 0.00 0.00 3.66
2272 2410 1.055040 GAGGGCAGCTCTGATACCAT 58.945 55.000 0.00 0.00 0.00 3.55
2273 2411 1.395045 CGAGGGCAGCTCTGATACCA 61.395 60.000 0.00 0.00 0.00 3.25
2274 2412 1.109920 TCGAGGGCAGCTCTGATACC 61.110 60.000 0.00 0.00 0.00 2.73
2275 2413 0.747255 TTCGAGGGCAGCTCTGATAC 59.253 55.000 0.00 0.00 0.00 2.24
2276 2414 0.747255 GTTCGAGGGCAGCTCTGATA 59.253 55.000 0.00 0.00 0.00 2.15
2277 2415 0.975040 AGTTCGAGGGCAGCTCTGAT 60.975 55.000 0.00 0.00 0.00 2.90
2278 2416 1.599606 GAGTTCGAGGGCAGCTCTGA 61.600 60.000 0.00 0.00 0.00 3.27
2279 2417 1.153667 GAGTTCGAGGGCAGCTCTG 60.154 63.158 0.00 0.00 0.00 3.35
2280 2418 0.975040 ATGAGTTCGAGGGCAGCTCT 60.975 55.000 0.00 0.00 0.00 4.09
2281 2419 0.529555 GATGAGTTCGAGGGCAGCTC 60.530 60.000 0.00 0.00 0.00 4.09
2282 2420 1.519719 GATGAGTTCGAGGGCAGCT 59.480 57.895 0.00 0.00 0.00 4.24
2283 2421 1.522580 GGATGAGTTCGAGGGCAGC 60.523 63.158 0.00 0.00 0.00 5.25
2284 2422 0.467384 ATGGATGAGTTCGAGGGCAG 59.533 55.000 0.00 0.00 0.00 4.85
2285 2423 0.178767 CATGGATGAGTTCGAGGGCA 59.821 55.000 0.00 0.00 0.00 5.36
2286 2424 0.465705 TCATGGATGAGTTCGAGGGC 59.534 55.000 0.00 0.00 32.11 5.19
2287 2425 2.432146 TCTTCATGGATGAGTTCGAGGG 59.568 50.000 0.00 0.00 38.19 4.30
2288 2426 3.118992 TGTCTTCATGGATGAGTTCGAGG 60.119 47.826 0.00 0.00 38.19 4.63
2289 2427 4.115401 TGTCTTCATGGATGAGTTCGAG 57.885 45.455 0.00 0.00 38.19 4.04
2290 2428 4.403752 AGATGTCTTCATGGATGAGTTCGA 59.596 41.667 0.00 0.00 38.19 3.71
2291 2429 4.691175 AGATGTCTTCATGGATGAGTTCG 58.309 43.478 0.00 0.00 38.19 3.95
2305 2443 5.713861 CAGGGAAGGAATTTGAAGATGTCTT 59.286 40.000 0.00 0.00 39.23 3.01
2306 2444 5.222213 ACAGGGAAGGAATTTGAAGATGTCT 60.222 40.000 0.00 0.00 0.00 3.41
2307 2445 5.012893 ACAGGGAAGGAATTTGAAGATGTC 58.987 41.667 0.00 0.00 0.00 3.06
2308 2446 5.003096 ACAGGGAAGGAATTTGAAGATGT 57.997 39.130 0.00 0.00 0.00 3.06
2309 2447 5.259632 AGACAGGGAAGGAATTTGAAGATG 58.740 41.667 0.00 0.00 0.00 2.90
2310 2448 5.504853 GAGACAGGGAAGGAATTTGAAGAT 58.495 41.667 0.00 0.00 0.00 2.40
2311 2449 4.563580 CGAGACAGGGAAGGAATTTGAAGA 60.564 45.833 0.00 0.00 0.00 2.87
2312 2450 3.686726 CGAGACAGGGAAGGAATTTGAAG 59.313 47.826 0.00 0.00 0.00 3.02
2313 2451 3.674997 CGAGACAGGGAAGGAATTTGAA 58.325 45.455 0.00 0.00 0.00 2.69
2314 2452 2.615493 GCGAGACAGGGAAGGAATTTGA 60.615 50.000 0.00 0.00 0.00 2.69
2315 2453 1.740025 GCGAGACAGGGAAGGAATTTG 59.260 52.381 0.00 0.00 0.00 2.32
2316 2454 1.340114 GGCGAGACAGGGAAGGAATTT 60.340 52.381 0.00 0.00 0.00 1.82
2317 2455 0.253327 GGCGAGACAGGGAAGGAATT 59.747 55.000 0.00 0.00 0.00 2.17
2318 2456 0.909610 TGGCGAGACAGGGAAGGAAT 60.910 55.000 0.00 0.00 0.00 3.01
2319 2457 0.909610 ATGGCGAGACAGGGAAGGAA 60.910 55.000 0.00 0.00 0.00 3.36
2320 2458 0.909610 AATGGCGAGACAGGGAAGGA 60.910 55.000 0.00 0.00 0.00 3.36
2321 2459 0.462759 GAATGGCGAGACAGGGAAGG 60.463 60.000 0.00 0.00 0.00 3.46
2322 2460 0.807667 CGAATGGCGAGACAGGGAAG 60.808 60.000 0.00 0.00 44.57 3.46
2323 2461 1.218047 CGAATGGCGAGACAGGGAA 59.782 57.895 0.00 0.00 44.57 3.97
2324 2462 2.892640 CGAATGGCGAGACAGGGA 59.107 61.111 0.00 0.00 44.57 4.20
2325 2463 2.892425 GCGAATGGCGAGACAGGG 60.892 66.667 0.00 0.00 44.57 4.45
2342 2480 3.573772 TTCTCTGTGGCGGCGTCAG 62.574 63.158 17.34 21.64 0.00 3.51
2343 2481 3.158537 TTTCTCTGTGGCGGCGTCA 62.159 57.895 11.51 11.51 0.00 4.35
2344 2482 2.357034 TTTCTCTGTGGCGGCGTC 60.357 61.111 3.62 3.62 0.00 5.19
2345 2483 2.665185 GTTTCTCTGTGGCGGCGT 60.665 61.111 9.37 0.00 0.00 5.68
2346 2484 2.357517 AGTTTCTCTGTGGCGGCG 60.358 61.111 0.51 0.51 0.00 6.46
2347 2485 1.294659 CTGAGTTTCTCTGTGGCGGC 61.295 60.000 0.00 0.00 0.00 6.53
2348 2486 1.294659 GCTGAGTTTCTCTGTGGCGG 61.295 60.000 5.77 0.00 33.06 6.13
2349 2487 0.601046 TGCTGAGTTTCTCTGTGGCG 60.601 55.000 5.77 0.00 33.06 5.69
2350 2488 1.534595 CTTGCTGAGTTTCTCTGTGGC 59.465 52.381 5.77 0.00 33.06 5.01
2351 2489 2.149578 CCTTGCTGAGTTTCTCTGTGG 58.850 52.381 5.77 3.34 33.06 4.17
2352 2490 2.149578 CCCTTGCTGAGTTTCTCTGTG 58.850 52.381 5.77 0.00 33.06 3.66
2353 2491 1.544314 GCCCTTGCTGAGTTTCTCTGT 60.544 52.381 5.77 0.00 33.06 3.41
2354 2492 1.163554 GCCCTTGCTGAGTTTCTCTG 58.836 55.000 0.00 0.00 33.52 3.35
2355 2493 0.767375 TGCCCTTGCTGAGTTTCTCT 59.233 50.000 0.00 0.00 38.71 3.10
2356 2494 1.609208 TTGCCCTTGCTGAGTTTCTC 58.391 50.000 0.00 0.00 38.71 2.87
2357 2495 2.299326 ATTGCCCTTGCTGAGTTTCT 57.701 45.000 0.00 0.00 38.71 2.52
2596 2734 2.386249 GAGGTTACGTCGATCTGCATC 58.614 52.381 0.00 0.00 0.00 3.91
2597 2735 1.268589 CGAGGTTACGTCGATCTGCAT 60.269 52.381 20.67 0.00 43.12 3.96
2598 2736 0.098200 CGAGGTTACGTCGATCTGCA 59.902 55.000 20.67 0.00 43.12 4.41
2599 2737 0.098376 ACGAGGTTACGTCGATCTGC 59.902 55.000 29.59 0.00 43.12 4.26
2608 2746 0.172578 TGCCATCAGACGAGGTTACG 59.827 55.000 0.00 0.00 39.31 3.18
2609 2747 2.094182 TCTTGCCATCAGACGAGGTTAC 60.094 50.000 0.00 0.00 0.00 2.50
2610 2748 2.094182 GTCTTGCCATCAGACGAGGTTA 60.094 50.000 0.00 0.00 0.00 2.85
2611 2749 0.976641 TCTTGCCATCAGACGAGGTT 59.023 50.000 0.00 0.00 0.00 3.50
2612 2750 0.247736 GTCTTGCCATCAGACGAGGT 59.752 55.000 0.00 0.00 0.00 3.85
2613 2751 0.460987 GGTCTTGCCATCAGACGAGG 60.461 60.000 0.00 0.00 37.17 4.63
2614 2752 0.247460 TGGTCTTGCCATCAGACGAG 59.753 55.000 0.00 0.00 43.61 4.18
2615 2753 2.361189 TGGTCTTGCCATCAGACGA 58.639 52.632 0.00 0.00 43.61 4.20
2623 2761 4.243008 TTCGCCGTGGTCTTGCCA 62.243 61.111 0.00 0.00 46.95 4.92
2624 2762 3.423154 CTTCGCCGTGGTCTTGCC 61.423 66.667 0.00 0.00 37.90 4.52
2625 2763 3.423154 CCTTCGCCGTGGTCTTGC 61.423 66.667 0.00 0.00 0.00 4.01
2626 2764 3.423154 GCCTTCGCCGTGGTCTTG 61.423 66.667 1.61 0.00 0.00 3.02
2627 2765 3.883744 CTGCCTTCGCCGTGGTCTT 62.884 63.158 1.61 0.00 0.00 3.01
2628 2766 4.379243 CTGCCTTCGCCGTGGTCT 62.379 66.667 1.61 0.00 0.00 3.85
2632 2770 3.659092 TTTGCTGCCTTCGCCGTG 61.659 61.111 0.00 0.00 0.00 4.94
2633 2771 3.660111 GTTTGCTGCCTTCGCCGT 61.660 61.111 0.00 0.00 0.00 5.68
2634 2772 4.404654 GGTTTGCTGCCTTCGCCG 62.405 66.667 0.00 0.00 0.00 6.46
2635 2773 4.056125 GGGTTTGCTGCCTTCGCC 62.056 66.667 0.00 0.00 0.00 5.54
2636 2774 4.404654 CGGGTTTGCTGCCTTCGC 62.405 66.667 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.