>input_sequence_72697
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-----------------------------------------------------------------------------ATG
GCAAAAGCTGTGCTCCTC------------CTCTCCCTGCTGCTGCCCTTGCTGCTCTTTTGGTGTGTCGCCCAGGCCCA
GCTGGCCAAGGAGTTCTGCGTGGCCGACCTGGCCAGCAGCGACACGCCGGCCGGCTACCCGTGCAAGCCCCAGGCCGCCG
TCACCGCCGACGACTTCTACTACCGCGGCCTGGGCACCACAGGCCCGACCGTCAACCCGTTCAAGATCAGCTTGTCCTCG
GCCTTCGTCACCAGCTTCCCCGGCGTGAACGGGCTGGGCATCTCCGCGGCGCGCGTCGACTTCGCGGTAGGAGGCGTGGT
GCCGCTGCACTGGCACCCGGCGGCCACGGAGCTCATCTTCGTGGTGGAGGGCACCCTGTCGTGCGGCTTCATCAGCGCCA
CCTCCAGCAACAGGGTCTACACCAACACCCTGTACAAGGGCGACATGATGGTGCTCCCGCAGGGCCAGCCGCACTTCCAG
TACAACCTCGGCAACACCACCGCCGTGGCGCTCTCCACCTACAGCAGCCCCAACCCCGGCGTGCAGACCCTCGACTTTGC
GCTCTTCGCCAACAACCTCCCGTCGGAGGTGCTCACCAAGGTCACCCTCCTCGACGACTTGCAGGTCAAGAAGCTCAAGG
CGCTCTTCGGCGGCACCGGATGA---------------------------------------------------------
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>chr2B_1_TraesCS2B01G616500
GACGATGTAAACTTTGTTTAATTTTAATAAAGCTAGCCATGATGGCCTTCCCTCAAAAAAATGTAGTGCATAATTTTGAG
TATTACATACCTCTTGTTTGGATTTAGGACATTGCTTAAGCGCATGCACTCCAGTTGTATG-------------------
GAGAGCTCGTTTAGGCTAAATTATAGCCAATTTCATCTCTATCCCGTGGAGCC-------CAAAGATTGTTTGCTGATCC
ACTAGCCGTGTGTGACAGATCGAGAGACGGGCTCGCTTGTTTTCACAAGTCATTGCGGCACGTGTGTGCCAAATTTTGCC
CTCAAACTATTTATATTTGTCTGATCAAGCCCTTTGAGTTTAGTTAGTGTTGTTTAATTATTTTAATAATCCCCCTAACG
TATGACTATGTTTTCAATAATTTCTAGAAGATGTTGCGTGATTCGCCAAGGTTTTAGAATTTGAGCACATGGGCGATCCA
CTATATTAAGGCTGGAAGCTTGAATT----------------------ATTTAGAGTAAATTATAGGTAGCACAACCAAA
TGCACGAATCTCATCTCTATCCCGTGGAATTCCAGAGCCCAAAGATTGTTTGCTAATCCACTAGCCGGATTGCTTGTTTT
CGCAAGTCATTGCGGTGTGTCATGGACCTAATAA-TTACTTTAATCCCCATGACATACG------TACCACCCAAAGAAT
GTTCTCAATACGTAGTTTCTGAAGTGAACACGTGCATGCGGTTAGCCGGCGGCGGTCTGACACACGG---TGCGGTTAAC
CACACGCAACCGGCCTGCTTCATCCTTGACTAGACTCTAACTTGCT----TATATA------GTTGATGAATTTCAAGTT
GCATATATATAT------------TATATGGTTGATCAATTTCAAGTTGGATTGATTGTGTAGTGACTGACTGACTG---
-GATCAAACTCTC---------------------------------CTCTACTTCTCCTATATACATACATGAGTATATA
TATGATATAAACAAGAGAGTACCGTACGGCCTCAAGAGTGGATCACACACATTTTTCAAGTACTATAAACGTACGCCATG
GCAAAAGCTGTGCTCCTC------------CTCTCCCTGCTGCTGCCCTTGCTGCTCTTTTGGTGTGTCGCCCAGGCCCA
GCTGGCCAAGGAGTTCTGCGTGGCCGACCTGGCCAGCAGCGACACGCCGGCCGGCTACCCGTGCAAGCCCCAGGCCGCCG
TCACCGCCGACGACTTCTACTACCGCGGCCTGGGCACCACAGGCCCGACCGTCAACCCGTTCAAGATCAGCTTGTCCTCG
GCCTTCGTCACCAGCTTCCCCGGCGTGAACGGGCTGGGCATCTCCGCGGCGCGCGTCGACTTCGCGGTAGGAGGCGTGGT
GCCGCTGCACTGGCACCCGGCGGCCACGGAGCTCATCTTCGTGGTGGAGGGCACCCTGTCGTGCGGCTTCATCAGCGCCA
CCTCCAGCAACAGGGTCTACACCAACACCCTGTACAAGGGCGACATGATGGTGCTCCCGCAGGGCCAGCCGCACTTCCAG
TACAACCTCGGCAACACCACCGCCGTGGCGCTCTCCACCTACAGCAGCCCCAACCCCGGCGTGCAGACCCTCGACTTTGC
GCTCTTCGCCAACAACCTCCCGTCGGAGGTGCTCACCAAGGTCACCCTCCTCGACGACTTGCAGGTCAAGAAGCTCAAGG
CGCTCTTCGGCGGCACCGGATGAGCCTCACCTCTTCTCCATTATATTGCTCGCCAGCCCTCCTCCGGGGTTGAACTTGAA
CTTGAATTGGTCGTGCCTTCCTGCTGTTCTCCGACTTGATTTACTTTATTATTCTATATCATCTTTTAAAATATTTTGTT
--ATTTATATGCATGCATGTATGTATGTGGGGTCAAATTTTCGAACAAATTTTCAGAAATTTTGTGCTCTTCCGGTCTTG
AAGAGATTTAATTTAGAGGTAGTAGCTGCCCGGCTCTTTTGAGCTTCAT------GGACCCGCTTCAGCTTTGCCAATGA
AGCTGAATCAGAAAATATGAAACAAACACCTAATTCGTTTGAGATACAGGTACTATATTCTTTTTTTTTTCACAAATGAA
AATTGTATGTGTTAAAGTATAGGCTGTACTTGTAGAAGCGTGACATACTGTTACGTATGTATTTGCGTGTGCGTGTGTAT
TGTAACTAGCGCAGGTTGTTAGTATAGATCAAGCCTTATCCGGTGTAGCTTGGAGTAGGGGCAAAGACTTGCAACAACAT
GCGCCTCCGATGTAATCTTCTCTGTGTATTTAACACGTACGCGTCCCTGCCAGGAAGGCATACGCTTCCACGCTTTTTCT
TCTTCTTTCATGGTATCAGAGCTGCCCTCGAACTCATCCATGAAGACATCTTCAAATTCCTTCCCTGTCTCGCCATTCGC
TGACGCCGCCACAGAGAAACTCAGCAAGGGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCACCACCGATGCAGATCGACGTAACCTCGTCTGATGGCAAGACCACGGCGAAGGCAGCAAACCCG
>chr2D_60
-----------------------------------------------------------AATGTAGTGCATAATTTTGAG
TATTACATACCTCTTGTTTGGATTTAGGACATTGCTTAAGCGCATGCACTCCAATTGTATGATAAGCATACAAATATATC
GAGAGCTCGTTTAGGATAAACTATAGGCAATTTCATCTCTATCCCATGGAATTCCAGAGTCAAAGATTGTTTGCTG--CC
ACTAGCCGTATGCGACAGATCGAGAGATGGGCTCGCTTGTTTTCACAAGTCATTGCGGCACGTGTGTGCCGATTTTAGCC
CCCAAACTATTTATATCTGTCTGAACAAGCCCTTTGAGTTTAGTTAGTGTTGTTAAATTATTTTAATAATCCCCCTAACG
TATGACTATGTTTTCAATAATTTCTAGAAGATGTTGCATGATTCGCCAAGGTTTTAGAATTTGAGCACATGGGCGATCCA
CTATATTAAGGTTGGAAGCTTGAATTATTTAGGTTGCATGCACAACTCATTTAGAGTAAATTATAGGTAGCACAACCAAA
TGCACGAATCTCATCTCTATCCCGTGGAATTCCAGAGCCCAAAGATTGTTTGCTAATCCACTAGCCGGATTGCTTGTTTT
CACAAGTCATTGCGGTGTGTCATGGACCTAATTACTTAATTTAATCCCCGTGACATACGTACTGCTACCACCCAAAGAAT
GTTTTCAA----TAGTTTCTGAAGTGAACACG----TGCGGTTAGCCGGCGGCGGTCTGACACACCGTC---CGGTTAAC
CACACGCAACCGGCCTGCCTCATCCTTGACTTGACTCTAAGTTGCT----TATATATATGTGGTTGATGAATTTCAAGTT
GCATATATATAT-----------------GGTTGATCAATTTCAAGTTGGATTGGTTATGTACT--------GACTGACT
GGATCAAACTCTCAAG----------TTTGCACCACCGCTCCTCCTCTATACTTCTCCTATATATATACATGAGGAG-TA
TATGATATAAACAAG----TACCGTACGGCCTCAAGAATCGATCACACACATTTCAAGTTATAA--------ACACCATG
GCAAAGATTGTGCTCCTCGTCCTGCCCTTGCTCTCCCTGCTGCTGCCCT---TGCTCTTTTGGTGTGTCGCCCAGGCCCA
GCTGGCCAAGGAGTTCTGCGTGGCCGACCTGGCCAGCAGCGACACGCCGGCCGGCTACCCGTGCAAGCCCCAGGCCGCCG
TCACCGCCGACGACTTCTACTACCGCGGCCTGGGCACCACAGGCCCGACCGTCAACCCGTTCAAGATCAGCTTGTCCTCG
GCCTTCGTCACCAGCTTCCCCGGCGTGAACGGGCTGGGCATCTCCGCCGCGCGCGTCGACTTCGCGGTGGGAGGCGTGGT
GCCGCTGCACTGGCACCCGGCGGCCACGGAGCTCATCTTCGTGGTGGAGGGCACCCTGTCGTGCGGCTTCATCAGCGCCA
CCTCCAACAACAGGGTCTACACCAACACCCTGTACAAGGGCGACATCATGGTGCTCCCGCAGGGCCAGCCGCACTTCCAG
TACAACCTCGGCAACACCACCGCCGTGGCGCTCTCCACCTACAGCAGCCCCAACCCCGGCGTCCAGACCCTCGACTTTGC
GCTCTTCGCCAACAACCTCCCGTCGGAGGTGCTCACCAAGGTCACCCTCCTCGACGACTTGCAGGTCAGGAAGCTCAAGG
CGCTCTTCGGCGGCACCGGCTGAGCCAT-CCTCTTCTCCATC-----TATCGTGTACCGGTCGAA----------TTCAA
CTTGAATTGGTCGTGCT----TGTTGTTCTCCGGCTTGATCTACT---TTATTC--TATCATCTTTTAGATTATTTTATT
TCATTTATATGCATGCATGTATGTATGTGGGGTCAAATTTTCGAATAAATTTTCAGAAATTTTGTGCTCT----GTCTTG
AAGAGATTTAATTTAGAGGTAGTAGCTGTCCGGCTCTTTTGAGCTTCATCTTCATGGACCCGCTTCAGCTTTGCCGATGA
AGCTGAATCAGGAAATATGAAACAAACAACTAATTCATTTGAGATCCAGGAACTAGATTC--------------------
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>chrUn_689
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-----------------------GTGAACACGTGCATGCGGTTAGCCGGCGGCGGCCTGACACACGTGCATGCGGTTAAC
CACACGCAACCGGCCTGCCTCATCCTTGACTTGACTCTAAGTTGAGTATATATATA------GTTGATGAATTTCAAGTT
GCATATATATATATATATATATATTATATGGTTGATCAATTTCAAGTTGGATTGGTTGTGTAGT--------GACTG---
-GATCAAATTTGGATTTGGATATCCATTTGCACCACCCCTATGT---TCTCCTAGTCCTATATATATACATGAGTAT---
---GATATAAACATG----TA-CGTACACCCTCAAGAATC--------------------ATAA--------ACGCCATG
GCAAAGATTGTGCTCCTC------------CTCTCCCTGCTGC---------TGCTCTTTTGGTGTGTCGCCCAGGCCCA
GCTGGCCAAGGAGTTCTGCGTGGCCGACCTGGGCAGCAGCGACACGCCGGCCGGCTACCCGTGCAAGCCCCAGGCCGCGG
TCACCGCCGACGACTTCTACTACCGCGGCCTGGGCACCACAGGCCCGACCGTGAACCCGTTCAAGATCAGCTTGTCCTCG
GCCTTCGTCACCAGCTTCCCCGGCGTGAACGGGCTGGGCATCTCGGCGGCGCGCGTCGACTTCGCCGTAGGAGGCGTGGT
GCCGCTGCACTGGCACCCGGCGGCCACGGAGCTCATCTTCGTGGTGGAGGGCACCCTGTCGTGCGGCTTCATCAGCGCCA
CCTCCAACAACAGGGTCTACACCAACACCCTGTACAAGGGCGACATGATGGTGCTCCCGCAGGGCCAGCCGCACTTCCAG
TACAACCTCGGCAACACCACCGCCGTG--------------CAGCAGCCCCAACCCCGGCGTGCAGACCCTCGACTTTGC
GCTCTTCGCCAACAACCTCCCGTCGGAGGTGCTCACCAAGGTCACCCTCCTCGACGACTTGCAGGTCAAGAAGCTCAAGG
CGCTCTTCGGCGGCACCGGATGAGCCTCAGCTCTTCTCCATC-----GCTCGCCAGCCCTCCCCCGGGGTTGAACTTGAA
CTTGAATTGGTCGTGCT----CGTGCTTCTCCGGCTTGATTTACTTTATTATTC--TATCATCTTTTAAAATATTTTGTT
--ATTTGTATGCATGCATGTATGTATGTGGGGTG------------AAATTTTCAGAATTTTTGTGCTCTTCCGGTCTTG
AAGAGATTTAATTTAGAGCTTGTAGCTGTCCGGCTCTTTTGAGCTTCAT------GGACCCGCTTCAGCTTTGCCGATGA
AGCTGAATCAGGAAATATGAAACAAACAACTAATTCGTTTGAGATCCA--------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
-----------------------------------------------------S--------------------------
---------------S----S-----S------------------S----SSS-----------------------SS--
---------S--S--------------S------------------------------------------S-S---S---
-S--------------S-------S-----------------------------S-------------------------
-------------------------------------S------------------------------------------
-----------S--------------------------------------------------------------------
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-S------------------------------S-----S----------S------------------------------
---S----SSSS--------------------------------------------------------------------
------------------S------------S--------S---------------------------------------
------------------------------------------------------S---------SSSSSSSS--------
----------------------------------------------------------------S------------S--
---------------SSSS------------------S-S--------------SSSSSSSSSSSSSSSSSS--------
-----SSS-----------------------------------------SSS----------------------------
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------S-------------------------------------------------------------------------
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-----------------------------------------SSSSSS---------------S-----------------
----------------SSSSS--S---------S--------------------SS------------------------
---------------------------------------------S----------------------------------
----------------------------S----------------------------------------------S----
-----------S----------------S----------------S----S----S----SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1078
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------------------GTACCGTACGGCCTCAAGAG------------------------------------------
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>reverse_2219
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----------------------------------------------------------GTATTTGCGTGTGCGTGTGT--
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