Multiple sequence alignment - TraesCS2B01G557500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G557500 chr2B 100.000 2568 0 0 1 2568 752298171 752300738 0.000000e+00 4743
1 TraesCS2B01G557500 chr2D 93.739 1166 71 2 704 1868 616755767 616754603 0.000000e+00 1748
2 TraesCS2B01G557500 chr2D 86.906 695 63 5 3 689 616756510 616755836 0.000000e+00 754
3 TraesCS2B01G557500 chr2D 87.728 383 37 5 3 381 272018935 272019311 3.030000e-119 438
4 TraesCS2B01G557500 chr2D 95.238 84 4 0 551 634 616755844 616755761 1.600000e-27 134
5 TraesCS2B01G557500 chr4B 86.867 967 115 10 690 1651 542582420 542583379 0.000000e+00 1072
6 TraesCS2B01G557500 chr4D 86.646 966 121 7 690 1651 438681229 438682190 0.000000e+00 1062
7 TraesCS2B01G557500 chr4D 87.958 382 40 4 2 381 47756966 47757343 1.810000e-121 446
8 TraesCS2B01G557500 chr4A 85.714 966 130 7 690 1651 28185881 28186842 0.000000e+00 1013
9 TraesCS2B01G557500 chr4A 81.503 173 27 4 1649 1820 576219547 576219379 1.240000e-28 137
10 TraesCS2B01G557500 chr7D 83.645 856 124 16 384 1233 612376169 612377014 0.000000e+00 791
11 TraesCS2B01G557500 chr7D 91.315 426 34 2 1229 1651 612164032 612163607 1.710000e-161 579
12 TraesCS2B01G557500 chr6A 88.220 382 41 3 2 381 492838987 492838608 1.080000e-123 453
13 TraesCS2B01G557500 chr5B 88.189 381 39 4 2 381 98288367 98288742 1.400000e-122 449
14 TraesCS2B01G557500 chr5B 87.927 381 41 3 2 381 73322884 73323260 6.520000e-121 444
15 TraesCS2B01G557500 chr5B 78.037 428 72 7 2019 2434 707138804 707139221 1.530000e-62 250
16 TraesCS2B01G557500 chr1D 87.958 382 41 3 1 381 319449483 319449106 1.810000e-121 446
17 TraesCS2B01G557500 chr3D 87.728 383 41 4 1 381 459524545 459524923 2.350000e-120 442
18 TraesCS2B01G557500 chr3D 87.371 388 41 6 2 387 266688382 266688001 3.030000e-119 438
19 TraesCS2B01G557500 chr5A 87.696 382 39 6 3 381 227167379 227167755 3.030000e-119 438
20 TraesCS2B01G557500 chr5A 74.479 815 163 28 1647 2438 70589493 70588701 6.900000e-81 311
21 TraesCS2B01G557500 chr3B 77.637 474 90 6 1970 2430 639135094 639134624 9.050000e-70 274
22 TraesCS2B01G557500 chr3B 80.203 197 38 1 1653 1849 639369044 639368849 2.060000e-31 147
23 TraesCS2B01G557500 chr7B 80.788 203 29 10 1653 1851 614761852 614762048 1.590000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G557500 chr2B 752298171 752300738 2567 False 4743.000000 4743 100.000 1 2568 1 chr2B.!!$F1 2567
1 TraesCS2B01G557500 chr2D 616754603 616756510 1907 True 878.666667 1748 91.961 3 1868 3 chr2D.!!$R1 1865
2 TraesCS2B01G557500 chr4B 542582420 542583379 959 False 1072.000000 1072 86.867 690 1651 1 chr4B.!!$F1 961
3 TraesCS2B01G557500 chr4D 438681229 438682190 961 False 1062.000000 1062 86.646 690 1651 1 chr4D.!!$F2 961
4 TraesCS2B01G557500 chr4A 28185881 28186842 961 False 1013.000000 1013 85.714 690 1651 1 chr4A.!!$F1 961
5 TraesCS2B01G557500 chr7D 612376169 612377014 845 False 791.000000 791 83.645 384 1233 1 chr7D.!!$F1 849
6 TraesCS2B01G557500 chr5A 70588701 70589493 792 True 311.000000 311 74.479 1647 2438 1 chr5A.!!$R1 791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.39034 TAGAGCAAAGAGGCAGTGCG 60.39 55.0 9.45 0.0 43.16 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 1841 0.034059 AACTGCTTGGACACGAGAGG 59.966 55.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.950475 AGGGTATTTTTAGAGCAAAGAGGC 59.050 41.667 0.00 0.00 0.00 4.70
24 25 4.705023 GGGTATTTTTAGAGCAAAGAGGCA 59.295 41.667 0.00 0.00 35.83 4.75
29 30 0.390340 TAGAGCAAAGAGGCAGTGCG 60.390 55.000 9.45 0.00 43.16 5.34
55 56 1.369625 GTATGAGCTGGGAACAACCG 58.630 55.000 0.00 0.00 42.06 4.44
58 59 1.070786 GAGCTGGGAACAACCGACA 59.929 57.895 0.00 0.00 42.06 4.35
64 65 1.527380 GGAACAACCGACAAGGGCA 60.527 57.895 0.00 0.00 46.96 5.36
65 66 0.893727 GGAACAACCGACAAGGGCAT 60.894 55.000 0.00 0.00 46.96 4.40
107 108 1.923909 GGTGGGTAGTGCTCCCCTT 60.924 63.158 1.54 0.00 44.00 3.95
108 109 1.498176 GGTGGGTAGTGCTCCCCTTT 61.498 60.000 1.54 0.00 44.00 3.11
117 118 2.679716 CTCCCCTTTGAGCCCCTG 59.320 66.667 0.00 0.00 0.00 4.45
142 146 0.675633 CTTCTTTGGCCCAACAGGTG 59.324 55.000 0.00 0.00 38.26 4.00
144 148 0.754957 TCTTTGGCCCAACAGGTGTG 60.755 55.000 0.00 0.00 38.26 3.82
149 153 1.455383 GGCCCAACAGGTGTGTTCTG 61.455 60.000 0.00 0.00 43.88 3.02
152 156 1.142060 CCCAACAGGTGTGTTCTGGTA 59.858 52.381 0.00 0.00 43.88 3.25
192 196 2.357952 GGTTTCACTGTGTTTGGACTCC 59.642 50.000 7.79 0.00 0.00 3.85
193 197 3.013921 GTTTCACTGTGTTTGGACTCCA 58.986 45.455 7.79 0.00 0.00 3.86
198 202 3.631686 CACTGTGTTTGGACTCCATTTGA 59.368 43.478 0.00 0.00 31.53 2.69
251 255 8.891671 AACAAGCAAGAAACATCAATTAACAT 57.108 26.923 0.00 0.00 0.00 2.71
260 264 6.849085 AACATCAATTAACATTGGGCACTA 57.151 33.333 0.00 0.00 40.41 2.74
261 265 7.422465 AACATCAATTAACATTGGGCACTAT 57.578 32.000 0.00 0.00 40.41 2.12
262 266 6.808829 ACATCAATTAACATTGGGCACTATG 58.191 36.000 8.95 8.95 40.41 2.23
263 267 6.380846 ACATCAATTAACATTGGGCACTATGT 59.619 34.615 10.41 10.41 40.41 2.29
264 268 6.449635 TCAATTAACATTGGGCACTATGTC 57.550 37.500 16.43 0.00 40.41 3.06
265 269 5.948758 TCAATTAACATTGGGCACTATGTCA 59.051 36.000 16.43 7.11 40.41 3.58
266 270 6.435591 TCAATTAACATTGGGCACTATGTCAA 59.564 34.615 16.43 9.06 40.41 3.18
267 271 7.123997 TCAATTAACATTGGGCACTATGTCAAT 59.876 33.333 16.43 11.08 40.41 2.57
268 272 8.412456 CAATTAACATTGGGCACTATGTCAATA 58.588 33.333 16.43 3.11 36.82 1.90
269 273 7.566760 TTAACATTGGGCACTATGTCAATAG 57.433 36.000 16.43 0.00 41.48 1.73
270 274 4.464008 ACATTGGGCACTATGTCAATAGG 58.536 43.478 10.41 0.00 40.23 2.57
271 275 4.079787 ACATTGGGCACTATGTCAATAGGT 60.080 41.667 10.41 0.00 40.23 3.08
272 276 4.584638 TTGGGCACTATGTCAATAGGTT 57.415 40.909 0.00 0.00 40.23 3.50
273 277 5.702065 TTGGGCACTATGTCAATAGGTTA 57.298 39.130 0.00 0.00 40.23 2.85
274 278 5.290493 TGGGCACTATGTCAATAGGTTAG 57.710 43.478 0.00 0.00 40.23 2.34
275 279 4.719773 TGGGCACTATGTCAATAGGTTAGT 59.280 41.667 0.00 0.00 40.23 2.24
534 543 6.722129 AGTACTATTGCATGGGTTGGTAAAAA 59.278 34.615 0.00 0.00 0.00 1.94
652 661 8.504005 GTGCTCTTAAAAGCTTGTTAATCTGTA 58.496 33.333 0.00 0.00 42.94 2.74
740 803 9.699410 ATGATTAATTTCAAGTGACCTTATCCA 57.301 29.630 0.00 0.00 0.00 3.41
901 964 8.594881 TTGGCAAATAATTACAATTGTCGTTT 57.405 26.923 15.85 9.73 30.23 3.60
958 1021 4.777463 AGACAATTTTAGTATGGACCCCG 58.223 43.478 0.00 0.00 0.00 5.73
983 1046 6.697641 TTCCATCTATATAAAGGGTCACCC 57.302 41.667 3.85 3.85 45.90 4.61
1005 1068 2.359531 TCCCGTCATTCAAAACACAACC 59.640 45.455 0.00 0.00 0.00 3.77
1021 1084 2.844348 ACAACCCATATCTTTCCCGAGT 59.156 45.455 0.00 0.00 0.00 4.18
1023 1086 2.759355 ACCCATATCTTTCCCGAGTGA 58.241 47.619 0.00 0.00 0.00 3.41
1069 1132 9.996554 TTCTTGTCATCTAGTCAAAAATCACTA 57.003 29.630 0.00 0.00 0.00 2.74
1111 1174 3.993535 CCAAAGAGAGGCAGGTGC 58.006 61.111 0.00 0.00 41.14 5.01
1115 1178 1.552337 CAAAGAGAGGCAGGTGCTCTA 59.448 52.381 1.26 0.00 38.00 2.43
1116 1179 2.170187 CAAAGAGAGGCAGGTGCTCTAT 59.830 50.000 1.26 0.00 38.00 1.98
1141 1204 1.559682 GGGAAGGTTGAGTATGAGGCA 59.440 52.381 0.00 0.00 0.00 4.75
1149 1212 4.565652 GGTTGAGTATGAGGCAAAGAAGGA 60.566 45.833 0.00 0.00 0.00 3.36
1161 1224 3.930848 GCAAAGAAGGAAAGGATTGCATG 59.069 43.478 3.64 0.00 41.93 4.06
1201 1264 1.272490 CGGTTAGAGAGAGTGGTTGCA 59.728 52.381 0.00 0.00 0.00 4.08
1344 1407 1.404851 GGAGTACTGCCAAGAGCTCAC 60.405 57.143 17.77 2.21 44.23 3.51
1544 1610 5.097742 TGTCGTGAGGAAATAATGGACAT 57.902 39.130 0.00 0.00 0.00 3.06
1546 1612 5.104941 TGTCGTGAGGAAATAATGGACATCT 60.105 40.000 0.00 0.00 0.00 2.90
1687 1753 1.073284 GTGCCCTTGGTTCCTTAGTCA 59.927 52.381 0.00 0.00 0.00 3.41
1692 1758 3.562176 CCCTTGGTTCCTTAGTCATGCTT 60.562 47.826 0.00 0.00 0.00 3.91
1714 1780 6.295067 GCTTAGTTTTTCCCAAGGCATCTAAA 60.295 38.462 0.00 0.00 0.00 1.85
1750 1816 0.542702 CTCCACCACTTGCCCCATTT 60.543 55.000 0.00 0.00 0.00 2.32
1759 1825 3.560896 CACTTGCCCCATTTTCACAAAAG 59.439 43.478 0.00 0.00 33.22 2.27
1768 1834 2.301577 TTTCACAAAAGCCCAAACGG 57.698 45.000 0.00 0.00 0.00 4.44
1775 1841 1.179174 AAAGCCCAAACGGAGCCTTC 61.179 55.000 0.00 0.00 0.00 3.46
1776 1842 3.062466 GCCCAAACGGAGCCTTCC 61.062 66.667 0.00 0.00 40.33 3.46
1778 1844 1.377333 CCCAAACGGAGCCTTCCTC 60.377 63.158 0.00 0.00 41.67 3.71
1806 1872 2.289195 CCAAGCAGTTGACCGTTACCTA 60.289 50.000 0.00 0.00 35.46 3.08
1828 1894 2.256461 GTTACTGACGCGTCGGGT 59.744 61.111 41.74 35.41 40.22 5.28
1849 1915 3.695060 GTCGGAGATCTTAAGACAGGTGA 59.305 47.826 7.48 1.00 40.67 4.02
1859 1925 3.259314 ACAGGTGAGCCATGGCCA 61.259 61.111 33.14 25.83 43.17 5.36
1876 1942 2.731976 GGCCATCGATTCTTATGACGAC 59.268 50.000 0.00 0.00 37.58 4.34
1878 1944 4.321008 GGCCATCGATTCTTATGACGACTA 60.321 45.833 0.00 0.00 37.58 2.59
1887 1953 2.359981 TATGACGACTAGGACCTGGG 57.640 55.000 9.98 2.42 0.00 4.45
1890 1956 0.106819 GACGACTAGGACCTGGGCTA 60.107 60.000 9.35 0.00 0.00 3.93
1900 1966 2.517609 CCTGGGCTAGGTGAGGTAC 58.482 63.158 9.06 0.00 42.00 3.34
1912 1978 2.685100 GTGAGGTACCACTTTCCTTCG 58.315 52.381 15.94 0.00 34.38 3.79
1920 1986 3.763057 ACCACTTTCCTTCGCCTAAATT 58.237 40.909 0.00 0.00 0.00 1.82
1924 1990 4.394920 CACTTTCCTTCGCCTAAATTAGCA 59.605 41.667 0.00 0.00 0.00 3.49
1925 1991 5.066505 CACTTTCCTTCGCCTAAATTAGCAT 59.933 40.000 0.00 0.00 0.00 3.79
1926 1992 5.652452 ACTTTCCTTCGCCTAAATTAGCATT 59.348 36.000 0.00 0.00 0.00 3.56
1927 1993 5.751243 TTCCTTCGCCTAAATTAGCATTC 57.249 39.130 0.00 0.00 0.00 2.67
1931 1997 2.441750 TCGCCTAAATTAGCATTCCCCT 59.558 45.455 0.00 0.00 0.00 4.79
1935 2001 3.823304 CCTAAATTAGCATTCCCCTGAGC 59.177 47.826 0.00 0.00 0.00 4.26
1939 2005 2.032860 TAGCATTCCCCTGAGCGAGC 62.033 60.000 0.00 0.00 0.00 5.03
1962 2028 3.272042 CATCCCCCACCAACCCCA 61.272 66.667 0.00 0.00 0.00 4.96
1963 2029 2.204608 ATCCCCCACCAACCCCAT 60.205 61.111 0.00 0.00 0.00 4.00
1964 2030 2.635596 ATCCCCCACCAACCCCATG 61.636 63.158 0.00 0.00 0.00 3.66
1965 2031 3.599933 CCCCCACCAACCCCATGT 61.600 66.667 0.00 0.00 0.00 3.21
1967 2033 2.361104 CCCACCAACCCCATGTCG 60.361 66.667 0.00 0.00 0.00 4.35
1968 2034 3.061848 CCACCAACCCCATGTCGC 61.062 66.667 0.00 0.00 0.00 5.19
1969 2035 3.061848 CACCAACCCCATGTCGCC 61.062 66.667 0.00 0.00 0.00 5.54
1970 2036 3.575247 ACCAACCCCATGTCGCCA 61.575 61.111 0.00 0.00 0.00 5.69
1971 2037 3.061848 CCAACCCCATGTCGCCAC 61.062 66.667 0.00 0.00 0.00 5.01
1973 2039 3.575247 AACCCCATGTCGCCACCA 61.575 61.111 0.00 0.00 0.00 4.17
1974 2040 3.860930 AACCCCATGTCGCCACCAC 62.861 63.158 0.00 0.00 0.00 4.16
1977 2043 4.697756 CCATGTCGCCACCACCGT 62.698 66.667 0.00 0.00 0.00 4.83
1978 2044 3.422303 CATGTCGCCACCACCGTG 61.422 66.667 0.00 0.00 39.91 4.94
1985 2051 4.096003 CCACCACCGTGCCCCTAG 62.096 72.222 0.00 0.00 38.79 3.02
2006 2072 2.997315 CCCTGCCGACCACTCTGA 60.997 66.667 0.00 0.00 0.00 3.27
2007 2073 2.262915 CCTGCCGACCACTCTGAC 59.737 66.667 0.00 0.00 0.00 3.51
2008 2074 2.279069 CCTGCCGACCACTCTGACT 61.279 63.158 0.00 0.00 0.00 3.41
2011 2077 1.066303 CTGCCGACCACTCTGACTATC 59.934 57.143 0.00 0.00 0.00 2.08
2012 2078 0.386113 GCCGACCACTCTGACTATCC 59.614 60.000 0.00 0.00 0.00 2.59
2013 2079 2.024825 GCCGACCACTCTGACTATCCT 61.025 57.143 0.00 0.00 0.00 3.24
2017 2083 3.219281 GACCACTCTGACTATCCTCCTC 58.781 54.545 0.00 0.00 0.00 3.71
2023 2089 2.158534 TCTGACTATCCTCCTCAGCTCC 60.159 54.545 0.00 0.00 32.88 4.70
2024 2090 1.243902 GACTATCCTCCTCAGCTCCG 58.756 60.000 0.00 0.00 0.00 4.63
2029 2095 2.420890 CTCCTCAGCTCCGATGGC 59.579 66.667 0.00 0.00 0.00 4.40
2030 2096 3.157252 TCCTCAGCTCCGATGGCC 61.157 66.667 0.00 0.00 0.00 5.36
2032 2098 4.247380 CTCAGCTCCGATGGCCCC 62.247 72.222 0.00 0.00 0.00 5.80
2037 2103 3.625897 CTCCGATGGCCCCGCATA 61.626 66.667 0.00 0.00 0.00 3.14
2038 2104 3.596066 CTCCGATGGCCCCGCATAG 62.596 68.421 0.00 0.00 0.00 2.23
2041 2107 2.828868 GATGGCCCCGCATAGTGA 59.171 61.111 0.00 0.00 0.00 3.41
2047 2113 1.279271 GGCCCCGCATAGTGATTCTAT 59.721 52.381 0.00 0.00 39.67 1.98
2050 2116 2.417379 CCCCGCATAGTGATTCTATCGG 60.417 54.545 13.38 13.38 42.43 4.18
2051 2117 2.881074 CCGCATAGTGATTCTATCGGG 58.119 52.381 12.91 3.72 41.04 5.14
2052 2118 2.492088 CCGCATAGTGATTCTATCGGGA 59.508 50.000 12.91 0.00 41.04 5.14
2056 2122 4.499183 CATAGTGATTCTATCGGGAAGCC 58.501 47.826 0.00 0.00 37.26 4.35
2071 2137 0.106015 AAGCCCTTCCACCCATATGC 60.106 55.000 0.00 0.00 0.00 3.14
2072 2138 1.229927 GCCCTTCCACCCATATGCA 59.770 57.895 0.00 0.00 0.00 3.96
2078 2144 1.294041 TCCACCCATATGCAGGAACA 58.706 50.000 5.13 0.00 0.00 3.18
2081 2147 2.624838 CCACCCATATGCAGGAACAATC 59.375 50.000 5.13 0.00 0.00 2.67
2082 2148 3.559069 CACCCATATGCAGGAACAATCT 58.441 45.455 5.13 0.00 0.00 2.40
2085 2151 4.209538 CCCATATGCAGGAACAATCTGAA 58.790 43.478 0.00 0.00 34.36 3.02
2088 2154 6.444633 CCATATGCAGGAACAATCTGAAATC 58.555 40.000 0.00 0.00 34.36 2.17
2092 2158 5.000591 TGCAGGAACAATCTGAAATCGTTA 58.999 37.500 0.00 0.00 34.36 3.18
2095 2161 4.636206 AGGAACAATCTGAAATCGTTAGCC 59.364 41.667 0.00 0.00 0.00 3.93
2114 2180 1.597663 CCGACCGGCATGTTTCTAATC 59.402 52.381 0.00 0.00 0.00 1.75
2115 2181 1.257936 CGACCGGCATGTTTCTAATCG 59.742 52.381 0.00 0.00 0.00 3.34
2160 2226 5.681105 CGTTTATAAGTCAATTGAATGGGCG 59.319 40.000 10.35 5.59 0.00 6.13
2161 2227 3.715628 ATAAGTCAATTGAATGGGCGC 57.284 42.857 10.35 0.00 0.00 6.53
2162 2228 1.549203 AAGTCAATTGAATGGGCGCT 58.451 45.000 10.35 0.00 0.00 5.92
2164 2230 1.203052 AGTCAATTGAATGGGCGCTTG 59.797 47.619 10.35 0.72 0.00 4.01
2167 2233 0.174162 AATTGAATGGGCGCTTGAGC 59.826 50.000 7.64 0.00 37.78 4.26
2180 2246 2.644078 GCTTGAGCGACTGAACTTTTG 58.356 47.619 0.00 0.00 0.00 2.44
2182 2248 3.487544 GCTTGAGCGACTGAACTTTTGTT 60.488 43.478 0.00 0.00 46.75 2.83
2183 2249 4.662145 CTTGAGCGACTGAACTTTTGTTT 58.338 39.130 0.00 0.00 43.66 2.83
2184 2250 4.014847 TGAGCGACTGAACTTTTGTTTG 57.985 40.909 0.00 0.00 43.66 2.93
2190 2256 5.627172 CGACTGAACTTTTGTTTGTTGAGA 58.373 37.500 0.00 0.00 43.66 3.27
2192 2258 6.195244 CGACTGAACTTTTGTTTGTTGAGATG 59.805 38.462 0.00 0.00 43.66 2.90
2198 2264 4.572985 TTTGTTTGTTGAGATGCTCCAG 57.427 40.909 0.00 0.00 0.00 3.86
2201 2267 3.953612 TGTTTGTTGAGATGCTCCAGTTT 59.046 39.130 0.00 0.00 0.00 2.66
2209 2275 3.159472 AGATGCTCCAGTTTGCAATCAA 58.841 40.909 10.05 0.00 42.74 2.57
2211 2277 4.951715 AGATGCTCCAGTTTGCAATCAATA 59.048 37.500 10.05 0.00 42.74 1.90
2215 2281 4.738541 GCTCCAGTTTGCAATCAATATGGG 60.739 45.833 10.05 4.66 38.09 4.00
2216 2282 4.352009 TCCAGTTTGCAATCAATATGGGT 58.648 39.130 10.05 0.00 38.09 4.51
2219 2285 5.481105 CAGTTTGCAATCAATATGGGTGTT 58.519 37.500 10.05 0.00 31.33 3.32
2220 2286 5.933463 CAGTTTGCAATCAATATGGGTGTTT 59.067 36.000 10.05 0.00 31.33 2.83
2224 2290 9.593134 GTTTGCAATCAATATGGGTGTTTATTA 57.407 29.630 0.00 0.00 31.33 0.98
2237 2303 7.185565 TGGGTGTTTATTAAGGATTGGATTCA 58.814 34.615 0.00 0.00 0.00 2.57
2244 2310 3.393426 AAGGATTGGATTCATGCCAGT 57.607 42.857 0.00 0.00 36.64 4.00
2245 2311 2.662866 AGGATTGGATTCATGCCAGTG 58.337 47.619 0.00 0.00 36.64 3.66
2247 2313 2.658285 GATTGGATTCATGCCAGTGGA 58.342 47.619 15.20 0.00 36.64 4.02
2257 2332 1.896220 TGCCAGTGGAAGCTAGTTTG 58.104 50.000 15.20 0.00 0.00 2.93
2263 2338 4.082571 CCAGTGGAAGCTAGTTTGGAAATG 60.083 45.833 1.68 0.00 0.00 2.32
2272 2347 4.283467 GCTAGTTTGGAAATGGAAAACCCT 59.717 41.667 0.00 0.00 34.96 4.34
2281 2356 8.728596 TGGAAATGGAAAACCCTAGAAATTAA 57.271 30.769 0.00 0.00 35.38 1.40
2323 2398 7.986889 GCCCATTTTAGATTATTTTGTGGTGAT 59.013 33.333 0.00 0.00 0.00 3.06
2335 2410 9.906660 TTATTTTGTGGTGATACTGATTTGAAC 57.093 29.630 0.00 0.00 0.00 3.18
2340 2415 6.714356 TGTGGTGATACTGATTTGAACAATCA 59.286 34.615 0.00 0.00 35.56 2.57
2341 2416 7.230309 TGTGGTGATACTGATTTGAACAATCAA 59.770 33.333 0.00 0.00 43.70 2.57
2342 2417 7.752239 GTGGTGATACTGATTTGAACAATCAAG 59.248 37.037 0.00 0.00 45.82 3.02
2343 2418 7.448161 TGGTGATACTGATTTGAACAATCAAGT 59.552 33.333 0.00 3.06 45.82 3.16
2347 2422 9.132521 GATACTGATTTGAACAATCAAGTTTGG 57.867 33.333 0.00 0.00 45.82 3.28
2390 2465 5.750352 AATTTGGTCTTTGATTGATGGCT 57.250 34.783 0.00 0.00 0.00 4.75
2392 2467 6.855763 ATTTGGTCTTTGATTGATGGCTAA 57.144 33.333 0.00 0.00 0.00 3.09
2393 2468 5.643379 TTGGTCTTTGATTGATGGCTAAC 57.357 39.130 0.00 0.00 0.00 2.34
2394 2469 4.922206 TGGTCTTTGATTGATGGCTAACT 58.078 39.130 0.00 0.00 0.00 2.24
2399 2474 4.574674 TTGATTGATGGCTAACTGGTCT 57.425 40.909 0.00 0.00 0.00 3.85
2400 2475 3.877559 TGATTGATGGCTAACTGGTCTG 58.122 45.455 0.00 0.00 0.00 3.51
2430 2505 2.491693 GAGGGCGATGGATTTGTTTTGA 59.508 45.455 0.00 0.00 0.00 2.69
2435 2510 2.731968 CGATGGATTTGTTTTGAGCCGG 60.732 50.000 0.00 0.00 0.00 6.13
2437 2512 1.253100 GGATTTGTTTTGAGCCGGGA 58.747 50.000 2.18 0.00 0.00 5.14
2439 2514 2.352715 GGATTTGTTTTGAGCCGGGAAG 60.353 50.000 2.18 0.00 0.00 3.46
2440 2515 1.036707 TTTGTTTTGAGCCGGGAAGG 58.963 50.000 2.18 0.00 44.97 3.46
2441 2516 0.106419 TTGTTTTGAGCCGGGAAGGT 60.106 50.000 2.18 0.00 43.70 3.50
2442 2517 0.821711 TGTTTTGAGCCGGGAAGGTG 60.822 55.000 2.18 0.00 43.70 4.00
2443 2518 0.536460 GTTTTGAGCCGGGAAGGTGA 60.536 55.000 2.18 0.00 43.70 4.02
2444 2519 0.404040 TTTTGAGCCGGGAAGGTGAT 59.596 50.000 2.18 0.00 43.70 3.06
2445 2520 0.322456 TTTGAGCCGGGAAGGTGATG 60.322 55.000 2.18 0.00 43.70 3.07
2446 2521 1.488705 TTGAGCCGGGAAGGTGATGT 61.489 55.000 2.18 0.00 43.70 3.06
2447 2522 1.299976 GAGCCGGGAAGGTGATGTT 59.700 57.895 2.18 0.00 43.70 2.71
2448 2523 0.744771 GAGCCGGGAAGGTGATGTTC 60.745 60.000 2.18 0.00 43.70 3.18
2449 2524 1.002624 GCCGGGAAGGTGATGTTCA 60.003 57.895 2.18 0.00 43.70 3.18
2450 2525 0.394352 GCCGGGAAGGTGATGTTCAT 60.394 55.000 2.18 0.00 43.70 2.57
2451 2526 1.382522 CCGGGAAGGTGATGTTCATG 58.617 55.000 0.00 0.00 34.51 3.07
2452 2527 1.382522 CGGGAAGGTGATGTTCATGG 58.617 55.000 0.00 0.00 0.00 3.66
2453 2528 1.065491 CGGGAAGGTGATGTTCATGGA 60.065 52.381 0.00 0.00 0.00 3.41
2454 2529 2.369394 GGGAAGGTGATGTTCATGGAC 58.631 52.381 0.00 0.00 0.00 4.02
2455 2530 2.009774 GGAAGGTGATGTTCATGGACG 58.990 52.381 0.00 0.00 0.00 4.79
2456 2531 2.009774 GAAGGTGATGTTCATGGACGG 58.990 52.381 0.00 0.00 0.00 4.79
2457 2532 0.392998 AGGTGATGTTCATGGACGGC 60.393 55.000 0.00 0.00 0.00 5.68
2458 2533 0.392998 GGTGATGTTCATGGACGGCT 60.393 55.000 0.00 0.00 0.00 5.52
2459 2534 1.453155 GTGATGTTCATGGACGGCTT 58.547 50.000 0.00 0.00 0.00 4.35
2460 2535 1.398390 GTGATGTTCATGGACGGCTTC 59.602 52.381 0.00 0.00 0.00 3.86
2461 2536 0.652592 GATGTTCATGGACGGCTTCG 59.347 55.000 0.00 0.00 40.22 3.79
2470 2545 3.542676 ACGGCTTCGTGGTCCACA 61.543 61.111 21.91 6.45 46.32 4.17
2471 2546 2.047274 CGGCTTCGTGGTCCACAT 60.047 61.111 21.91 0.00 33.40 3.21
2472 2547 2.100631 CGGCTTCGTGGTCCACATC 61.101 63.158 21.91 6.98 33.40 3.06
2473 2548 1.745489 GGCTTCGTGGTCCACATCC 60.745 63.158 21.91 11.98 33.40 3.51
2474 2549 1.003839 GCTTCGTGGTCCACATCCA 60.004 57.895 21.91 0.00 33.40 3.41
2479 2554 4.740922 TGGTCCACATCCACATGC 57.259 55.556 0.00 0.00 32.57 4.06
2480 2555 1.766381 TGGTCCACATCCACATGCA 59.234 52.632 0.00 0.00 32.57 3.96
2481 2556 0.608856 TGGTCCACATCCACATGCAC 60.609 55.000 0.00 0.00 32.57 4.57
2482 2557 1.647545 GGTCCACATCCACATGCACG 61.648 60.000 0.00 0.00 32.57 5.34
2483 2558 1.377072 TCCACATCCACATGCACGG 60.377 57.895 0.00 0.00 32.57 4.94
2484 2559 2.409055 CCACATCCACATGCACGGG 61.409 63.158 0.00 0.00 32.57 5.28
2485 2560 1.377072 CACATCCACATGCACGGGA 60.377 57.895 5.40 5.40 32.57 5.14
2486 2561 1.377202 ACATCCACATGCACGGGAC 60.377 57.895 5.06 0.00 32.60 4.46
2487 2562 1.078214 CATCCACATGCACGGGACT 60.078 57.895 5.06 0.00 32.60 3.85
2488 2563 0.177836 CATCCACATGCACGGGACTA 59.822 55.000 5.06 0.00 32.60 2.59
2489 2564 1.131638 ATCCACATGCACGGGACTAT 58.868 50.000 5.06 0.00 32.60 2.12
2490 2565 0.464036 TCCACATGCACGGGACTATC 59.536 55.000 0.00 0.00 0.00 2.08
2491 2566 0.875908 CCACATGCACGGGACTATCG 60.876 60.000 0.00 0.00 0.00 2.92
2492 2567 0.179111 CACATGCACGGGACTATCGT 60.179 55.000 0.00 0.00 41.93 3.73
2493 2568 0.102481 ACATGCACGGGACTATCGTC 59.898 55.000 0.00 0.00 38.94 4.20
2494 2569 0.385751 CATGCACGGGACTATCGTCT 59.614 55.000 0.00 0.00 40.10 4.18
2495 2570 1.112113 ATGCACGGGACTATCGTCTT 58.888 50.000 0.00 0.00 40.10 3.01
2496 2571 0.454600 TGCACGGGACTATCGTCTTC 59.545 55.000 0.00 0.00 40.10 2.87
2497 2572 0.591741 GCACGGGACTATCGTCTTCG 60.592 60.000 0.00 10.33 40.10 3.79
2498 2573 0.591741 CACGGGACTATCGTCTTCGC 60.592 60.000 11.31 0.00 40.10 4.70
2499 2574 1.028330 ACGGGACTATCGTCTTCGCA 61.028 55.000 11.31 0.00 40.10 5.10
2500 2575 0.591741 CGGGACTATCGTCTTCGCAC 60.592 60.000 0.00 0.00 40.10 5.34
2501 2576 0.454600 GGGACTATCGTCTTCGCACA 59.545 55.000 0.00 0.00 40.10 4.57
2502 2577 1.546834 GGACTATCGTCTTCGCACAC 58.453 55.000 0.00 0.00 40.10 3.82
2503 2578 1.135489 GGACTATCGTCTTCGCACACA 60.135 52.381 0.00 0.00 40.10 3.72
2504 2579 2.592194 GACTATCGTCTTCGCACACAA 58.408 47.619 0.00 0.00 37.19 3.33
2505 2580 2.325761 ACTATCGTCTTCGCACACAAC 58.674 47.619 0.00 0.00 36.96 3.32
2506 2581 2.287970 ACTATCGTCTTCGCACACAACA 60.288 45.455 0.00 0.00 36.96 3.33
2507 2582 1.139989 ATCGTCTTCGCACACAACAG 58.860 50.000 0.00 0.00 36.96 3.16
2508 2583 0.874175 TCGTCTTCGCACACAACAGG 60.874 55.000 0.00 0.00 36.96 4.00
2509 2584 1.831389 CGTCTTCGCACACAACAGGG 61.831 60.000 0.00 0.00 0.00 4.45
2510 2585 0.814010 GTCTTCGCACACAACAGGGT 60.814 55.000 0.00 0.00 0.00 4.34
2511 2586 0.753867 TCTTCGCACACAACAGGGTA 59.246 50.000 0.00 0.00 0.00 3.69
2512 2587 1.139256 TCTTCGCACACAACAGGGTAA 59.861 47.619 0.00 0.00 0.00 2.85
2513 2588 1.263217 CTTCGCACACAACAGGGTAAC 59.737 52.381 0.00 0.00 0.00 2.50
2531 2606 3.966215 CGCAGGGTGTTCACGAAT 58.034 55.556 0.00 0.00 0.00 3.34
2532 2607 2.244000 CGCAGGGTGTTCACGAATT 58.756 52.632 0.00 0.00 0.00 2.17
2533 2608 0.591170 CGCAGGGTGTTCACGAATTT 59.409 50.000 0.00 0.00 0.00 1.82
2534 2609 1.399727 CGCAGGGTGTTCACGAATTTC 60.400 52.381 0.00 0.00 0.00 2.17
2535 2610 1.880027 GCAGGGTGTTCACGAATTTCT 59.120 47.619 0.00 0.00 0.00 2.52
2536 2611 2.293399 GCAGGGTGTTCACGAATTTCTT 59.707 45.455 0.00 0.00 0.00 2.52
2537 2612 3.609409 GCAGGGTGTTCACGAATTTCTTC 60.609 47.826 0.00 0.00 0.00 2.87
2538 2613 3.815401 CAGGGTGTTCACGAATTTCTTCT 59.185 43.478 0.00 0.00 0.00 2.85
2539 2614 4.275936 CAGGGTGTTCACGAATTTCTTCTT 59.724 41.667 0.00 0.00 0.00 2.52
2540 2615 4.515567 AGGGTGTTCACGAATTTCTTCTTC 59.484 41.667 0.00 0.00 0.00 2.87
2541 2616 4.515567 GGGTGTTCACGAATTTCTTCTTCT 59.484 41.667 0.00 0.00 0.00 2.85
2542 2617 5.008712 GGGTGTTCACGAATTTCTTCTTCTT 59.991 40.000 0.00 0.00 0.00 2.52
2543 2618 6.136743 GGTGTTCACGAATTTCTTCTTCTTC 58.863 40.000 0.00 0.00 0.00 2.87
2544 2619 6.136743 GTGTTCACGAATTTCTTCTTCTTCC 58.863 40.000 0.00 0.00 0.00 3.46
2545 2620 5.238650 TGTTCACGAATTTCTTCTTCTTCCC 59.761 40.000 0.00 0.00 0.00 3.97
2546 2621 3.994392 TCACGAATTTCTTCTTCTTCCCG 59.006 43.478 0.00 0.00 0.00 5.14
2547 2622 3.994392 CACGAATTTCTTCTTCTTCCCGA 59.006 43.478 0.00 0.00 0.00 5.14
2548 2623 3.995048 ACGAATTTCTTCTTCTTCCCGAC 59.005 43.478 0.00 0.00 0.00 4.79
2549 2624 3.994392 CGAATTTCTTCTTCTTCCCGACA 59.006 43.478 0.00 0.00 0.00 4.35
2550 2625 4.143094 CGAATTTCTTCTTCTTCCCGACAC 60.143 45.833 0.00 0.00 0.00 3.67
2551 2626 4.625607 ATTTCTTCTTCTTCCCGACACT 57.374 40.909 0.00 0.00 0.00 3.55
2552 2627 3.662247 TTCTTCTTCTTCCCGACACTC 57.338 47.619 0.00 0.00 0.00 3.51
2553 2628 2.594131 TCTTCTTCTTCCCGACACTCA 58.406 47.619 0.00 0.00 0.00 3.41
2554 2629 2.963101 TCTTCTTCTTCCCGACACTCAA 59.037 45.455 0.00 0.00 0.00 3.02
2555 2630 3.005897 TCTTCTTCTTCCCGACACTCAAG 59.994 47.826 0.00 0.00 0.00 3.02
2556 2631 2.594131 TCTTCTTCCCGACACTCAAGA 58.406 47.619 0.00 0.00 0.00 3.02
2557 2632 2.963101 TCTTCTTCCCGACACTCAAGAA 59.037 45.455 0.00 0.00 34.47 2.52
2558 2633 2.814280 TCTTCCCGACACTCAAGAAC 57.186 50.000 0.00 0.00 0.00 3.01
2559 2634 2.036387 TCTTCCCGACACTCAAGAACA 58.964 47.619 0.00 0.00 0.00 3.18
2560 2635 2.035961 TCTTCCCGACACTCAAGAACAG 59.964 50.000 0.00 0.00 0.00 3.16
2561 2636 0.679505 TCCCGACACTCAAGAACAGG 59.320 55.000 0.00 0.00 0.00 4.00
2562 2637 0.320771 CCCGACACTCAAGAACAGGG 60.321 60.000 0.00 0.00 0.00 4.45
2563 2638 0.393077 CCGACACTCAAGAACAGGGT 59.607 55.000 0.00 0.00 0.00 4.34
2564 2639 1.605712 CCGACACTCAAGAACAGGGTC 60.606 57.143 0.00 0.00 40.43 4.46
2565 2640 1.784525 GACACTCAAGAACAGGGTCG 58.215 55.000 0.00 0.00 34.63 4.79
2566 2641 1.068741 GACACTCAAGAACAGGGTCGT 59.931 52.381 0.00 0.00 34.63 4.34
2567 2642 1.202533 ACACTCAAGAACAGGGTCGTG 60.203 52.381 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.950475 GCCTCTTTGCTCTAAAAATACCCT 59.050 41.667 0.00 0.00 0.00 4.34
1 2 4.705023 TGCCTCTTTGCTCTAAAAATACCC 59.295 41.667 0.00 0.00 0.00 3.69
9 10 1.813513 GCACTGCCTCTTTGCTCTAA 58.186 50.000 0.00 0.00 33.26 2.10
23 24 2.586079 CATACGCCTCCCGCACTG 60.586 66.667 0.00 0.00 41.76 3.66
24 25 2.758327 TCATACGCCTCCCGCACT 60.758 61.111 0.00 0.00 41.76 4.40
29 30 2.423446 CCAGCTCATACGCCTCCC 59.577 66.667 0.00 0.00 0.00 4.30
37 38 1.066430 GTCGGTTGTTCCCAGCTCATA 60.066 52.381 0.00 0.00 0.00 2.15
38 39 0.321653 GTCGGTTGTTCCCAGCTCAT 60.322 55.000 0.00 0.00 0.00 2.90
39 40 1.070786 GTCGGTTGTTCCCAGCTCA 59.929 57.895 0.00 0.00 0.00 4.26
40 41 0.534203 TTGTCGGTTGTTCCCAGCTC 60.534 55.000 0.00 0.00 0.00 4.09
43 44 0.889186 CCCTTGTCGGTTGTTCCCAG 60.889 60.000 0.00 0.00 0.00 4.45
55 56 2.757099 CCCAGGCATGCCCTTGTC 60.757 66.667 33.14 7.23 43.06 3.18
102 103 2.036256 CACAGGGGCTCAAAGGGG 59.964 66.667 0.00 0.00 0.00 4.79
107 108 0.690762 GAAGTACCACAGGGGCTCAA 59.309 55.000 0.00 0.00 42.05 3.02
108 109 0.178903 AGAAGTACCACAGGGGCTCA 60.179 55.000 0.00 0.00 42.05 4.26
116 117 0.847373 TGGGCCAAAGAAGTACCACA 59.153 50.000 2.13 0.00 0.00 4.17
117 118 1.611977 GTTGGGCCAAAGAAGTACCAC 59.388 52.381 22.82 0.44 0.00 4.16
171 175 2.357952 GGAGTCCAAACACAGTGAAACC 59.642 50.000 7.81 0.00 37.80 3.27
232 236 6.649973 TGCCCAATGTTAATTGATGTTTCTTG 59.350 34.615 0.05 0.00 45.17 3.02
235 239 6.165577 AGTGCCCAATGTTAATTGATGTTTC 58.834 36.000 0.05 0.00 45.17 2.78
241 245 5.948758 TGACATAGTGCCCAATGTTAATTGA 59.051 36.000 0.05 0.00 45.17 2.57
245 249 6.545666 CCTATTGACATAGTGCCCAATGTTAA 59.454 38.462 0.00 0.00 36.48 2.01
251 255 4.584638 AACCTATTGACATAGTGCCCAA 57.415 40.909 0.00 0.00 31.64 4.12
334 338 8.851541 AAATTTTGATTGTTCCATGCTGTTAT 57.148 26.923 0.00 0.00 0.00 1.89
338 342 9.806203 TCTATAAATTTTGATTGTTCCATGCTG 57.194 29.630 0.00 0.00 0.00 4.41
471 475 3.656559 CATCTCATGCATCGGTACATCA 58.343 45.455 0.00 0.00 0.00 3.07
559 568 9.665719 TTGTAATTCTATTAACAGTGAGATGCA 57.334 29.630 0.00 0.00 0.00 3.96
658 667 9.719355 TGAACTAGCTTAATTACATGTTCTTGA 57.281 29.630 2.30 0.00 35.16 3.02
829 892 8.552296 ACACCTCCAATTAATCATAGAGAAACT 58.448 33.333 0.00 0.00 0.00 2.66
830 893 8.738645 ACACCTCCAATTAATCATAGAGAAAC 57.261 34.615 0.00 0.00 0.00 2.78
940 1003 3.945640 AGCGGGGTCCATACTAAAATT 57.054 42.857 0.00 0.00 0.00 1.82
958 1021 6.174049 GGTGACCCTTTATATAGATGGAAGC 58.826 44.000 0.00 0.00 0.00 3.86
983 1046 3.550030 GGTTGTGTTTTGAATGACGGGAG 60.550 47.826 0.00 0.00 0.00 4.30
1005 1068 7.390027 AGATATTTCACTCGGGAAAGATATGG 58.610 38.462 2.10 0.00 38.44 2.74
1069 1132 7.385267 GCATACTCAAAGTGGAGATGATCTAT 58.615 38.462 0.00 0.00 38.30 1.98
1105 1168 0.911769 TCCCCACAATAGAGCACCTG 59.088 55.000 0.00 0.00 0.00 4.00
1111 1174 3.264450 ACTCAACCTTCCCCACAATAGAG 59.736 47.826 0.00 0.00 0.00 2.43
1115 1178 3.591527 TCATACTCAACCTTCCCCACAAT 59.408 43.478 0.00 0.00 0.00 2.71
1116 1179 2.983192 TCATACTCAACCTTCCCCACAA 59.017 45.455 0.00 0.00 0.00 3.33
1141 1204 4.162651 ACCATGCAATCCTTTCCTTCTTT 58.837 39.130 0.00 0.00 0.00 2.52
1149 1212 5.305128 TCTTCTTTCAACCATGCAATCCTTT 59.695 36.000 0.00 0.00 0.00 3.11
1161 1224 2.712709 GGGCTACCTCTTCTTTCAACC 58.287 52.381 0.00 0.00 0.00 3.77
1201 1264 1.261480 TTGCTCTCTCTTTCTCCGCT 58.739 50.000 0.00 0.00 0.00 5.52
1309 1372 1.428869 ACTCCTTGCACTCCTCAAGT 58.571 50.000 0.00 0.00 39.30 3.16
1344 1407 2.518949 CAATTTCTTGGTTGATCCGCG 58.481 47.619 0.00 0.00 39.52 6.46
1416 1479 3.123453 TGATTCGACTGAAGACAAATGCG 59.877 43.478 0.00 0.00 37.57 4.73
1590 1656 8.776376 TCTTTCCTTGGATAATTTCAATTTGC 57.224 30.769 0.00 0.00 0.00 3.68
1687 1753 3.238597 TGCCTTGGGAAAAACTAAGCAT 58.761 40.909 0.00 0.00 0.00 3.79
1692 1758 7.790782 AATTTAGATGCCTTGGGAAAAACTA 57.209 32.000 0.00 0.00 0.00 2.24
1714 1780 4.152647 GTGGAGGGGAAAAGTGAGAAAAT 58.847 43.478 0.00 0.00 0.00 1.82
1750 1816 1.407258 CTCCGTTTGGGCTTTTGTGAA 59.593 47.619 0.00 0.00 35.24 3.18
1759 1825 3.062466 GGAAGGCTCCGTTTGGGC 61.062 66.667 0.00 0.00 35.24 5.36
1768 1834 1.251527 TGGACACGAGAGGAAGGCTC 61.252 60.000 0.00 0.00 0.00 4.70
1775 1841 0.034059 AACTGCTTGGACACGAGAGG 59.966 55.000 0.00 0.00 0.00 3.69
1776 1842 1.143305 CAACTGCTTGGACACGAGAG 58.857 55.000 0.00 0.00 0.00 3.20
1778 1844 0.861837 GTCAACTGCTTGGACACGAG 59.138 55.000 0.00 0.00 0.00 4.18
1806 1872 1.208614 GACGCGTCAGTAACCGAGT 59.791 57.895 33.09 0.00 39.77 4.18
1828 1894 3.948473 CTCACCTGTCTTAAGATCTCCGA 59.052 47.826 8.75 2.97 0.00 4.55
1849 1915 0.184451 AAGAATCGATGGCCATGGCT 59.816 50.000 34.70 17.99 41.60 4.75
1859 1925 5.181622 GGTCCTAGTCGTCATAAGAATCGAT 59.818 44.000 0.00 0.00 34.93 3.59
1892 1958 2.685100 CGAAGGAAAGTGGTACCTCAC 58.315 52.381 14.36 3.61 37.89 3.51
1896 1962 0.323957 AGGCGAAGGAAAGTGGTACC 59.676 55.000 4.43 4.43 0.00 3.34
1897 1963 3.323751 TTAGGCGAAGGAAAGTGGTAC 57.676 47.619 0.00 0.00 0.00 3.34
1900 1966 4.201920 GCTAATTTAGGCGAAGGAAAGTGG 60.202 45.833 5.61 0.00 0.00 4.00
1902 1968 4.585879 TGCTAATTTAGGCGAAGGAAAGT 58.414 39.130 5.61 0.00 0.00 2.66
1908 1974 3.253432 GGGGAATGCTAATTTAGGCGAAG 59.747 47.826 5.61 0.00 0.00 3.79
1911 1977 2.554032 CAGGGGAATGCTAATTTAGGCG 59.446 50.000 5.61 0.00 0.00 5.52
1912 1978 3.823304 CTCAGGGGAATGCTAATTTAGGC 59.177 47.826 5.61 0.00 0.00 3.93
1920 1986 2.032860 GCTCGCTCAGGGGAATGCTA 62.033 60.000 0.00 0.00 34.03 3.49
1924 1990 3.854669 CGGCTCGCTCAGGGGAAT 61.855 66.667 0.00 0.00 34.03 3.01
1931 1997 4.819761 GATGCCACGGCTCGCTCA 62.820 66.667 9.92 0.00 42.51 4.26
1942 2008 3.991318 GGTTGGTGGGGGATGCCA 61.991 66.667 5.30 0.00 0.00 4.92
1943 2009 4.777854 GGGTTGGTGGGGGATGCC 62.778 72.222 0.00 0.00 0.00 4.40
1944 2010 4.777854 GGGGTTGGTGGGGGATGC 62.778 72.222 0.00 0.00 0.00 3.91
1954 2020 3.061848 GTGGCGACATGGGGTTGG 61.062 66.667 0.00 0.00 46.14 3.77
1956 2022 3.575247 TGGTGGCGACATGGGGTT 61.575 61.111 0.00 0.00 46.14 4.11
1968 2034 4.096003 CTAGGGGCACGGTGGTGG 62.096 72.222 10.60 0.00 44.54 4.61
1992 2058 1.103803 GATAGTCAGAGTGGTCGGCA 58.896 55.000 0.00 0.00 0.00 5.69
1997 2063 2.583101 TGAGGAGGATAGTCAGAGTGGT 59.417 50.000 0.00 0.00 0.00 4.16
1999 2065 2.622942 GCTGAGGAGGATAGTCAGAGTG 59.377 54.545 2.77 0.00 40.21 3.51
2004 2070 1.477740 CGGAGCTGAGGAGGATAGTCA 60.478 57.143 0.00 0.00 0.00 3.41
2006 2072 0.847373 TCGGAGCTGAGGAGGATAGT 59.153 55.000 0.00 0.00 0.00 2.12
2007 2073 1.818060 CATCGGAGCTGAGGAGGATAG 59.182 57.143 0.00 0.00 0.00 2.08
2008 2074 1.548809 CCATCGGAGCTGAGGAGGATA 60.549 57.143 0.00 0.00 0.00 2.59
2011 2077 3.136750 CCATCGGAGCTGAGGAGG 58.863 66.667 0.00 0.00 0.00 4.30
2012 2078 2.420890 GCCATCGGAGCTGAGGAG 59.579 66.667 0.00 0.00 0.00 3.69
2013 2079 3.157252 GGCCATCGGAGCTGAGGA 61.157 66.667 0.00 0.00 0.00 3.71
2023 2089 2.454832 ATCACTATGCGGGGCCATCG 62.455 60.000 4.39 9.48 0.00 3.84
2024 2090 0.250901 AATCACTATGCGGGGCCATC 60.251 55.000 4.39 0.00 0.00 3.51
2029 2095 2.417379 CCGATAGAATCACTATGCGGGG 60.417 54.545 0.91 0.00 42.03 5.73
2030 2096 2.881074 CCGATAGAATCACTATGCGGG 58.119 52.381 0.91 0.00 42.03 6.13
2032 2098 3.850122 TCCCGATAGAATCACTATGCG 57.150 47.619 0.00 0.00 41.32 4.73
2033 2099 3.929610 GCTTCCCGATAGAATCACTATGC 59.070 47.826 0.00 0.00 41.32 3.14
2034 2100 4.499183 GGCTTCCCGATAGAATCACTATG 58.501 47.826 0.00 0.00 41.32 2.23
2035 2101 3.515901 GGGCTTCCCGATAGAATCACTAT 59.484 47.826 0.00 0.00 38.00 2.12
2037 2103 1.694696 GGGCTTCCCGATAGAATCACT 59.305 52.381 0.00 0.00 32.13 3.41
2038 2104 2.171341 GGGCTTCCCGATAGAATCAC 57.829 55.000 0.00 0.00 32.13 3.06
2051 2117 1.986882 CATATGGGTGGAAGGGCTTC 58.013 55.000 0.00 0.00 38.80 3.86
2052 2118 0.106015 GCATATGGGTGGAAGGGCTT 60.106 55.000 4.56 0.00 0.00 4.35
2056 2122 0.846015 TCCTGCATATGGGTGGAAGG 59.154 55.000 4.56 0.00 0.00 3.46
2062 2128 3.202818 TCAGATTGTTCCTGCATATGGGT 59.797 43.478 4.56 0.00 0.00 4.51
2071 2137 5.447818 GGCTAACGATTTCAGATTGTTCCTG 60.448 44.000 0.00 0.00 0.00 3.86
2072 2138 4.636206 GGCTAACGATTTCAGATTGTTCCT 59.364 41.667 0.00 0.00 0.00 3.36
2095 2161 1.257936 CGATTAGAAACATGCCGGTCG 59.742 52.381 1.90 0.00 0.00 4.79
2097 2163 2.684001 TCGATTAGAAACATGCCGGT 57.316 45.000 1.90 0.00 0.00 5.28
2137 2203 5.458779 GCGCCCATTCAATTGACTTATAAAC 59.541 40.000 7.89 0.00 0.00 2.01
2138 2204 5.359576 AGCGCCCATTCAATTGACTTATAAA 59.640 36.000 7.89 0.00 0.00 1.40
2145 2211 1.202114 TCAAGCGCCCATTCAATTGAC 59.798 47.619 7.89 0.00 0.00 3.18
2147 2213 1.917273 CTCAAGCGCCCATTCAATTG 58.083 50.000 2.29 0.00 0.00 2.32
2148 2214 0.174162 GCTCAAGCGCCCATTCAATT 59.826 50.000 2.29 0.00 0.00 2.32
2160 2226 2.032178 ACAAAAGTTCAGTCGCTCAAGC 59.968 45.455 0.00 0.00 37.78 4.01
2161 2227 3.951979 ACAAAAGTTCAGTCGCTCAAG 57.048 42.857 0.00 0.00 0.00 3.02
2162 2228 4.083003 ACAAACAAAAGTTCAGTCGCTCAA 60.083 37.500 0.00 0.00 0.00 3.02
2164 2230 4.016113 ACAAACAAAAGTTCAGTCGCTC 57.984 40.909 0.00 0.00 0.00 5.03
2167 2233 5.627172 TCTCAACAAACAAAAGTTCAGTCG 58.373 37.500 0.00 0.00 0.00 4.18
2170 2236 6.038356 AGCATCTCAACAAACAAAAGTTCAG 58.962 36.000 0.00 0.00 0.00 3.02
2172 2238 5.460091 GGAGCATCTCAACAAACAAAAGTTC 59.540 40.000 0.00 0.00 33.73 3.01
2175 2241 4.935702 TGGAGCATCTCAACAAACAAAAG 58.064 39.130 0.00 0.00 33.73 2.27
2177 2243 3.953612 ACTGGAGCATCTCAACAAACAAA 59.046 39.130 0.00 0.00 33.73 2.83
2178 2244 3.554934 ACTGGAGCATCTCAACAAACAA 58.445 40.909 0.00 0.00 33.73 2.83
2179 2245 3.213206 ACTGGAGCATCTCAACAAACA 57.787 42.857 0.00 0.00 33.73 2.83
2180 2246 4.293415 CAAACTGGAGCATCTCAACAAAC 58.707 43.478 0.00 0.00 33.73 2.93
2182 2248 2.294233 GCAAACTGGAGCATCTCAACAA 59.706 45.455 0.00 0.00 33.73 2.83
2183 2249 1.881973 GCAAACTGGAGCATCTCAACA 59.118 47.619 0.00 0.00 33.73 3.33
2184 2250 1.881973 TGCAAACTGGAGCATCTCAAC 59.118 47.619 0.00 0.00 35.51 3.18
2190 2256 5.452776 CCATATTGATTGCAAACTGGAGCAT 60.453 40.000 1.71 0.00 39.86 3.79
2192 2258 4.365723 CCATATTGATTGCAAACTGGAGC 58.634 43.478 1.71 0.00 39.86 4.70
2198 2264 8.491331 AATAAACACCCATATTGATTGCAAAC 57.509 30.769 1.71 0.04 37.59 2.93
2201 2267 8.420222 CCTTAATAAACACCCATATTGATTGCA 58.580 33.333 0.00 0.00 0.00 4.08
2209 2275 9.897040 AATCCAATCCTTAATAAACACCCATAT 57.103 29.630 0.00 0.00 0.00 1.78
2211 2277 7.843760 TGAATCCAATCCTTAATAAACACCCAT 59.156 33.333 0.00 0.00 0.00 4.00
2215 2281 7.653311 GGCATGAATCCAATCCTTAATAAACAC 59.347 37.037 0.00 0.00 0.00 3.32
2216 2282 7.344093 TGGCATGAATCCAATCCTTAATAAACA 59.656 33.333 0.00 0.00 0.00 2.83
2219 2285 7.014518 CACTGGCATGAATCCAATCCTTAATAA 59.985 37.037 0.00 0.00 32.41 1.40
2220 2286 6.491062 CACTGGCATGAATCCAATCCTTAATA 59.509 38.462 0.00 0.00 32.41 0.98
2224 2290 3.028850 CACTGGCATGAATCCAATCCTT 58.971 45.455 0.00 0.00 32.41 3.36
2237 2303 2.440409 CAAACTAGCTTCCACTGGCAT 58.560 47.619 0.00 0.00 0.00 4.40
2244 2310 4.380843 TCCATTTCCAAACTAGCTTCCA 57.619 40.909 0.00 0.00 0.00 3.53
2245 2311 5.722021 TTTCCATTTCCAAACTAGCTTCC 57.278 39.130 0.00 0.00 0.00 3.46
2247 2313 5.221641 GGGTTTTCCATTTCCAAACTAGCTT 60.222 40.000 0.00 0.00 42.91 3.74
2257 2332 8.812972 ACTTAATTTCTAGGGTTTTCCATTTCC 58.187 33.333 0.00 0.00 42.91 3.13
2281 2356 7.544804 AAAATGGGCTCTTATCAAGAAAACT 57.455 32.000 0.00 0.00 37.02 2.66
2293 2368 8.260114 CCACAAAATAATCTAAAATGGGCTCTT 58.740 33.333 0.00 0.00 0.00 2.85
2294 2369 7.400052 ACCACAAAATAATCTAAAATGGGCTCT 59.600 33.333 0.00 0.00 0.00 4.09
2295 2370 7.492344 CACCACAAAATAATCTAAAATGGGCTC 59.508 37.037 0.00 0.00 0.00 4.70
2314 2389 6.951062 TTGTTCAAATCAGTATCACCACAA 57.049 33.333 0.00 0.00 0.00 3.33
2323 2398 8.006298 ACCAAACTTGATTGTTCAAATCAGTA 57.994 30.769 1.46 0.00 41.22 2.74
2324 2399 6.877236 ACCAAACTTGATTGTTCAAATCAGT 58.123 32.000 1.46 0.85 41.22 3.41
2325 2400 7.775397 AACCAAACTTGATTGTTCAAATCAG 57.225 32.000 1.46 0.34 41.22 2.90
2331 2406 9.883142 AGAATTAAAACCAAACTTGATTGTTCA 57.117 25.926 0.00 0.00 0.00 3.18
2365 2440 5.702209 GCCATCAATCAAAGACCAAATTTGT 59.298 36.000 16.73 5.32 38.50 2.83
2369 2444 6.438425 AGTTAGCCATCAATCAAAGACCAAAT 59.562 34.615 0.00 0.00 0.00 2.32
2370 2445 5.774690 AGTTAGCCATCAATCAAAGACCAAA 59.225 36.000 0.00 0.00 0.00 3.28
2376 2451 4.946157 AGACCAGTTAGCCATCAATCAAAG 59.054 41.667 0.00 0.00 0.00 2.77
2390 2465 4.274147 CCTCTTCTAGCTCAGACCAGTTA 58.726 47.826 0.00 0.00 31.12 2.24
2392 2467 2.622977 CCCTCTTCTAGCTCAGACCAGT 60.623 54.545 0.00 0.00 31.12 4.00
2393 2468 2.031120 CCCTCTTCTAGCTCAGACCAG 58.969 57.143 0.00 0.00 31.12 4.00
2394 2469 1.962402 GCCCTCTTCTAGCTCAGACCA 60.962 57.143 0.00 0.00 31.12 4.02
2399 2474 1.035923 CATCGCCCTCTTCTAGCTCA 58.964 55.000 0.00 0.00 0.00 4.26
2400 2475 0.316841 CCATCGCCCTCTTCTAGCTC 59.683 60.000 0.00 0.00 0.00 4.09
2430 2505 1.299976 GAACATCACCTTCCCGGCT 59.700 57.895 0.00 0.00 35.61 5.52
2435 2510 2.009774 CGTCCATGAACATCACCTTCC 58.990 52.381 0.00 0.00 0.00 3.46
2437 2512 1.950484 GCCGTCCATGAACATCACCTT 60.950 52.381 0.00 0.00 0.00 3.50
2439 2514 0.392998 AGCCGTCCATGAACATCACC 60.393 55.000 0.00 0.00 0.00 4.02
2440 2515 1.398390 GAAGCCGTCCATGAACATCAC 59.602 52.381 0.00 0.00 0.00 3.06
2441 2516 1.737838 GAAGCCGTCCATGAACATCA 58.262 50.000 0.00 0.00 0.00 3.07
2442 2517 0.652592 CGAAGCCGTCCATGAACATC 59.347 55.000 0.00 0.00 0.00 3.06
2443 2518 2.767536 CGAAGCCGTCCATGAACAT 58.232 52.632 0.00 0.00 0.00 2.71
2444 2519 4.277239 CGAAGCCGTCCATGAACA 57.723 55.556 0.00 0.00 0.00 3.18
2454 2529 2.047274 ATGTGGACCACGAAGCCG 60.047 61.111 19.67 0.00 37.14 5.52
2455 2530 1.745489 GGATGTGGACCACGAAGCC 60.745 63.158 19.67 11.56 37.14 4.35
2456 2531 1.003839 TGGATGTGGACCACGAAGC 60.004 57.895 19.67 5.91 37.14 3.86
2457 2532 2.840974 GTGGATGTGGACCACGAAG 58.159 57.895 19.67 0.00 46.15 3.79
2462 2537 0.608856 GTGCATGTGGATGTGGACCA 60.609 55.000 0.00 0.00 31.44 4.02
2463 2538 1.647545 CGTGCATGTGGATGTGGACC 61.648 60.000 0.00 0.00 33.73 4.46
2464 2539 1.647545 CCGTGCATGTGGATGTGGAC 61.648 60.000 4.96 0.00 33.91 4.02
2465 2540 1.377072 CCGTGCATGTGGATGTGGA 60.377 57.895 4.96 0.00 31.50 4.02
2466 2541 2.409055 CCCGTGCATGTGGATGTGG 61.409 63.158 4.96 0.00 31.50 4.17
2467 2542 1.377072 TCCCGTGCATGTGGATGTG 60.377 57.895 10.95 0.00 31.50 3.21
2468 2543 1.377202 GTCCCGTGCATGTGGATGT 60.377 57.895 16.24 0.00 31.50 3.06
2469 2544 0.177836 TAGTCCCGTGCATGTGGATG 59.822 55.000 16.24 0.00 0.00 3.51
2470 2545 1.070758 GATAGTCCCGTGCATGTGGAT 59.929 52.381 16.24 9.84 0.00 3.41
2471 2546 0.464036 GATAGTCCCGTGCATGTGGA 59.536 55.000 10.95 10.95 0.00 4.02
2472 2547 0.875908 CGATAGTCCCGTGCATGTGG 60.876 60.000 4.96 6.15 0.00 4.17
2473 2548 2.593376 CGATAGTCCCGTGCATGTG 58.407 57.895 4.96 0.00 0.00 3.21
2486 2561 2.324860 TGTTGTGTGCGAAGACGATAG 58.675 47.619 0.00 0.00 42.66 2.08
2487 2562 2.324860 CTGTTGTGTGCGAAGACGATA 58.675 47.619 0.00 0.00 42.66 2.92
2488 2563 1.139989 CTGTTGTGTGCGAAGACGAT 58.860 50.000 0.00 0.00 42.66 3.73
2489 2564 0.874175 CCTGTTGTGTGCGAAGACGA 60.874 55.000 0.00 0.00 42.66 4.20
2490 2565 1.564622 CCTGTTGTGTGCGAAGACG 59.435 57.895 0.00 0.00 42.93 4.18
2491 2566 0.814010 ACCCTGTTGTGTGCGAAGAC 60.814 55.000 0.00 0.00 0.00 3.01
2492 2567 0.753867 TACCCTGTTGTGTGCGAAGA 59.246 50.000 0.00 0.00 0.00 2.87
2493 2568 1.263217 GTTACCCTGTTGTGTGCGAAG 59.737 52.381 0.00 0.00 0.00 3.79
2494 2569 1.301423 GTTACCCTGTTGTGTGCGAA 58.699 50.000 0.00 0.00 0.00 4.70
2495 2570 0.533308 GGTTACCCTGTTGTGTGCGA 60.533 55.000 0.00 0.00 0.00 5.10
2496 2571 1.837538 CGGTTACCCTGTTGTGTGCG 61.838 60.000 0.00 0.00 0.00 5.34
2497 2572 1.946267 CGGTTACCCTGTTGTGTGC 59.054 57.895 0.00 0.00 0.00 4.57
2498 2573 0.816018 TGCGGTTACCCTGTTGTGTG 60.816 55.000 0.00 0.00 0.00 3.82
2499 2574 0.534203 CTGCGGTTACCCTGTTGTGT 60.534 55.000 0.00 0.00 0.00 3.72
2500 2575 1.234615 CCTGCGGTTACCCTGTTGTG 61.235 60.000 0.00 0.00 0.00 3.33
2501 2576 1.072505 CCTGCGGTTACCCTGTTGT 59.927 57.895 0.00 0.00 0.00 3.32
2502 2577 1.674322 CCCTGCGGTTACCCTGTTG 60.674 63.158 0.00 0.00 0.00 3.33
2503 2578 2.151388 ACCCTGCGGTTACCCTGTT 61.151 57.895 0.00 0.00 40.58 3.16
2504 2579 2.528378 ACCCTGCGGTTACCCTGT 60.528 61.111 0.00 0.00 40.58 4.00
2505 2580 2.046314 CACCCTGCGGTTACCCTG 60.046 66.667 0.00 0.00 42.04 4.45
2506 2581 2.120737 GAACACCCTGCGGTTACCCT 62.121 60.000 0.00 0.00 42.04 4.34
2507 2582 1.673337 GAACACCCTGCGGTTACCC 60.673 63.158 0.00 0.00 42.04 3.69
2508 2583 1.071814 TGAACACCCTGCGGTTACC 59.928 57.895 0.00 0.00 42.04 2.85
2509 2584 1.562575 CGTGAACACCCTGCGGTTAC 61.563 60.000 0.00 0.00 42.04 2.50
2510 2585 1.301087 CGTGAACACCCTGCGGTTA 60.301 57.895 0.00 0.00 42.04 2.85
2511 2586 2.590575 CGTGAACACCCTGCGGTT 60.591 61.111 0.00 0.00 42.04 4.44
2512 2587 2.391724 ATTCGTGAACACCCTGCGGT 62.392 55.000 0.00 0.00 46.31 5.68
2513 2588 1.234615 AATTCGTGAACACCCTGCGG 61.235 55.000 0.00 0.00 0.00 5.69
2514 2589 0.591170 AAATTCGTGAACACCCTGCG 59.409 50.000 0.00 0.00 0.00 5.18
2515 2590 1.880027 AGAAATTCGTGAACACCCTGC 59.120 47.619 0.00 0.00 0.00 4.85
2516 2591 3.815401 AGAAGAAATTCGTGAACACCCTG 59.185 43.478 0.00 0.00 0.00 4.45
2517 2592 4.086706 AGAAGAAATTCGTGAACACCCT 57.913 40.909 0.00 0.00 0.00 4.34
2518 2593 4.515567 AGAAGAAGAAATTCGTGAACACCC 59.484 41.667 0.00 0.00 0.00 4.61
2519 2594 5.674933 AGAAGAAGAAATTCGTGAACACC 57.325 39.130 0.00 0.00 0.00 4.16
2520 2595 6.136743 GGAAGAAGAAGAAATTCGTGAACAC 58.863 40.000 0.00 0.00 0.00 3.32
2521 2596 5.238650 GGGAAGAAGAAGAAATTCGTGAACA 59.761 40.000 0.00 0.00 0.00 3.18
2522 2597 5.614887 CGGGAAGAAGAAGAAATTCGTGAAC 60.615 44.000 0.00 0.00 0.00 3.18
2523 2598 4.451096 CGGGAAGAAGAAGAAATTCGTGAA 59.549 41.667 0.00 0.00 0.00 3.18
2524 2599 3.994392 CGGGAAGAAGAAGAAATTCGTGA 59.006 43.478 0.00 0.00 0.00 4.35
2525 2600 3.994392 TCGGGAAGAAGAAGAAATTCGTG 59.006 43.478 0.00 0.00 0.00 4.35
2526 2601 3.995048 GTCGGGAAGAAGAAGAAATTCGT 59.005 43.478 0.00 0.00 0.00 3.85
2527 2602 3.994392 TGTCGGGAAGAAGAAGAAATTCG 59.006 43.478 0.00 0.00 0.00 3.34
2528 2603 4.998033 AGTGTCGGGAAGAAGAAGAAATTC 59.002 41.667 0.00 0.00 0.00 2.17
2529 2604 4.974399 AGTGTCGGGAAGAAGAAGAAATT 58.026 39.130 0.00 0.00 0.00 1.82
2530 2605 4.040461 TGAGTGTCGGGAAGAAGAAGAAAT 59.960 41.667 0.00 0.00 0.00 2.17
2531 2606 3.386726 TGAGTGTCGGGAAGAAGAAGAAA 59.613 43.478 0.00 0.00 0.00 2.52
2532 2607 2.963101 TGAGTGTCGGGAAGAAGAAGAA 59.037 45.455 0.00 0.00 0.00 2.52
2533 2608 2.594131 TGAGTGTCGGGAAGAAGAAGA 58.406 47.619 0.00 0.00 0.00 2.87
2534 2609 3.005897 TCTTGAGTGTCGGGAAGAAGAAG 59.994 47.826 0.00 0.00 0.00 2.85
2535 2610 2.963101 TCTTGAGTGTCGGGAAGAAGAA 59.037 45.455 0.00 0.00 0.00 2.52
2536 2611 2.594131 TCTTGAGTGTCGGGAAGAAGA 58.406 47.619 0.00 0.00 0.00 2.87
2537 2612 3.060602 GTTCTTGAGTGTCGGGAAGAAG 58.939 50.000 0.00 0.00 35.61 2.85
2538 2613 2.432874 TGTTCTTGAGTGTCGGGAAGAA 59.567 45.455 0.00 0.00 33.15 2.52
2539 2614 2.035961 CTGTTCTTGAGTGTCGGGAAGA 59.964 50.000 0.00 0.00 0.00 2.87
2540 2615 2.408050 CTGTTCTTGAGTGTCGGGAAG 58.592 52.381 0.00 0.00 0.00 3.46
2541 2616 1.070134 CCTGTTCTTGAGTGTCGGGAA 59.930 52.381 0.00 0.00 0.00 3.97
2542 2617 0.679505 CCTGTTCTTGAGTGTCGGGA 59.320 55.000 0.00 0.00 0.00 5.14
2543 2618 0.320771 CCCTGTTCTTGAGTGTCGGG 60.321 60.000 0.00 0.00 0.00 5.14
2544 2619 0.393077 ACCCTGTTCTTGAGTGTCGG 59.607 55.000 0.00 0.00 0.00 4.79
2545 2620 1.784525 GACCCTGTTCTTGAGTGTCG 58.215 55.000 0.00 0.00 0.00 4.35
2546 2621 1.068741 ACGACCCTGTTCTTGAGTGTC 59.931 52.381 0.00 0.00 0.00 3.67
2547 2622 1.120530 ACGACCCTGTTCTTGAGTGT 58.879 50.000 0.00 0.00 0.00 3.55
2548 2623 1.502231 CACGACCCTGTTCTTGAGTG 58.498 55.000 0.00 0.00 0.00 3.51
2549 2624 3.989104 CACGACCCTGTTCTTGAGT 57.011 52.632 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.