>input_sequence_75670
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----------------------ACAACCCATATCTTTCCCGAGTGAAATATCTCGAGAAAGATACTTCTTGTCATCTAGT
CAAAAATCACTATAGATCATCTCCACTTTGAGTATGCCAAAGAGAGGCAGGTGCTCTATTGTGGGGAAGGTTGAGTATGA
GGCAAAGAAGGAAAGGATTGCATGGTTGAAAGAAGAGGTAGCCCGGTTAGAGAGAGTGGTTGCAGCGGAGAAAGAGAGAG
CAAAAGAGACCAACCAACGCTTTGAGAAGGCCAAGGAAGAGAGCTCTGGAACTGTGGCCAGGTATCTCTTCATGAATGAA
GAGGATCTTACACTTGAGGAGTGCAAGGAGTACTGCCAAGAGCTCACGCGGATCAACCAAGAAATTGCAAATCGATTGTC
CTTAGAGTCCATGGGCTCAAATGTGCCACCACCGCAGCCGCATTTGTCTTCAGTCGAATCACAAACTAAGGAAGAAAAGT
AGTGAAACT--CATACCTAGTCCATATGTGGGTCATGTCCCGTTGTTTGAGATATATTACTTATGTTGTCGTGAGGAAAT
AATGGAC-ATCTGCTTATTTAGCAATGAATAAA-----------------------------------------------
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--
>chr2B_1_TraesCS2B01G557500
AGGGTATTTTTAGAGCAAAGAGGCAGTGCGGGAGGCGTATGAGCTGGGAACAACCGACAAGGGCATGCCTGGGCCCCCAA
GCGCGCCCAGGTGGGTAGTGCTCCCCTTTGAGCCCCTG---TGGTACTTCTTTGGCCCAACAGGTGTGTTCTGGTACAGA
AAAAATCTCCAAAAGGTTTCACTGTGTTTGGACTCCATTTGATATTGATTTTTTGTGTGAAGTAAAAAAAACAAGCAAGA
AACATCAATTAACATTGGGCACTATGTCAATAGGTTAGTCCCAAAAAATGATATGAAGTTGCTATAAAATGATTGTAAAA
CATCTAAGAATGATAATATAACAGCATGGAACAATCAAAATTTATAGATGCGTTGGAGACGTATTAGTTAGTCCCTCAAA
AAAATTTTAAAACATAAAAGATTGCATAACTAAGGGATAATATTCAGAAACATACTCATTTATAGATAAATTGGTGATGT
ACCG-----ATGCATGAGATGCTTGGAAATTTTAAAAAGTACTATTGCATGGGTTGGTAAAAACTAATCTTAAATTATGT
TTTATGTTGCATCTCACTGTTAATAGAATTACAAACATTTGGAAATTCTTTCTTACCTAATAATTATAAAGAGTGTGCTC
TTAAAAGCTTGTTAATCTGTATGTAATCAAGAACATGTAATTAAGCTAGTTCAATGTTACAAATGTGTACA---------
---------------------------------------------TACTTTTCTCCATGATTAATTTCAAGTGACCTTAT
CCAATGATCTATGTTTAGCAAATAATTATGACCTTCATTGTCGTGTAGCATATTTTTAGCCAAAAATTGAAATGCTCTAA
ATGTGTACATAAGTTTCTCTATGATTAATTGGAGGTGTCCTTATCCATCGTCCTATGTTTGGCAAATAATTACAATTGTC
GTTTTTGTGTAGCATATTTTTCTTTAGAGGACATTGATAGACAATTTTAGTATGGACCCCGCTTCCATCTATATAAAGGG
TCACCCTCCCGTCATTCAAAACACAACCCATATCTTTCCCGAGTGAAATATCTCGAGAAAGATACTTCTTGTCATCTAGT
CAAAAATCACTATAGATCATCTCCACTTTGAGTATGCCAAAGAGAGGCAGGTGCTCTATTGTGGGGAAGGTTGAGTATGA
GGCAAAGAAGGAAAGGATTGCATGGTTGAAAGAAGAGGTAGCCCGGTTAGAGAGAGTGGTTGCAGCGGAGAAAGAGAGAG
CAAAAGAGACCAACCAACGCTTTGAGAAGGCCAAGGAAGAGAGCTCTGGAACTGTGGCCAGGTATCTCTTCATGAATGAA
GAGGATCTTACACTTGAGGAGTGCAAGGAGTACTGCCAAGAGCTCACGCGGATCAACCAAGAAATTGCAAATCGATTGTC
CTTAGAGTCCATGGGCTCAAATGTGCCACCACCGCAGCCGCATTTGTCTTCAGTCGAATCACAAACTAAGGAAGAAAAGT
AGTGAAACT--CATACCTAGTCCATATGTGGGTCATGTCCCGTTGTTTGAGATATATTACTTATGTTGTCGTGAGGAAAT
AATGGAC-ATCTGCTTATTTAGCAATGAATAAACTTGTTTGAAGTAATACTTGTCGCAAATTGAAATTATCCAAGGAAAG
AGTTGTAGTTGAACAAAGAAGGAAAAGATTAAAAAAGGGGATTTCTATTTATGTGCCCTTGGTTCCTTAGTCATGCTTAG
TTTTTCCCAAGGCATCTAAATTTTCTCACTTTTCCCCTCCACCACTTGCCCCATTTTCACAAAAGCCCAAACGGAGCCTT
CCTCTCGTGTCCAAGCAGTTGACCGTTACCTACTCGGTTACTGACGCGTCGGGTCGGAGATCTTAAGACAGGTGAGCCAT
GGCCATCGATTCTTATGACGACTAGGACCTGGGCTAGGTGAGGTACCACTTTCCTTCGCCTAAATTAGCATTCCCCTGAG
CGAGCCGTGGCATCCCCCACCAACCCCATGTCGCCACCACCGTGCCCCTAGCAGCCCTGCCGACCACTCTGACTATCCTC
CTCAGCTCCGATGGCCCCGCATAGTGATTCTATCGGGAAGCCCTTCCACCCATATGCAGGAACAATCTGAAATCGTTAGC
CGACCGGCATGTTTCTAATCGAAACCCTAACAATTAGGATTCGTTTATAAGTCAATTGAATGGGCGCTTGAGCGACTGAA
CTTTTGTTTGTTGAGATGCTCCAGTTTGCAATCAATATGGGTGTTTATTAAGGATTGGATTCATGCCAGTGGA-------
--AGCTAGTTTGGAAATGGAAAACCCTAGAAATTAAGTTTTCTTGATAAGAGCCCATTTTAGATTATTTTGTGGTGATAC
TGATTTGAACAATCAAGTTTGGTTTTAATTCTTTGATTTACAAATTTGGTCTTTGATTGATGGCTAACTGGTCTGAGCTA
GAAGAGGGCGATGGATTTGTTTTGAGCCGGGAAGGTGATGTTCATGGACGGCTTCGTGGTCCACATCCACATGCACGGGA
CTATCGTCTTCGCACACAACAGGGTAACCGCAGGGTGTTCACGAATTTCTTCTTCTTCCCGACACTCAAGAACAGGGTCG
TG
>chr2D_3
--GGTATTTATAGAGCAAAGAGGTGGTGCTGGAGGCGGCCCAGGTGGGAACAACCCACCAGGGCGCGCCTGGGCCCCTAG
GCGCGCCCATGTGGGTTGTGCTTCCCTCGGAGCCCCCCCTCTGGTACTTCTTTGGCCCAACAGGTATCTTCTAGTCCAGA
AAAAATCTCCAAAAAGTTTCACTGTGTTTGGACTCTGTTTGGTATTGATTTTCTGCGAAGT----AAAAAACAAGAAAAA
AACAGCAACTAACACTGGGCACT----------------CCCAAAAAATGATATAAAGTTGCTATAAAATGATTGTAAAA
TATCCAAGAATGATAATGTAATAGCATGGAACAATCAAAAATTATAGATACGTTGGAGACGTATTAGTTAGTCCCTCAAA
AGGATTTTAAAACATAAAACATTGCATAACTAAAGGATAATATCCAGAAACATACTCATTTACAGATAAATTGGAGATGT
ACCATTACAATGCACGAGATGCTTGGAAATTTTAAAAAGTACTATTGCATCGGTTGGTAAAAGCTAATCTTAAACTATGT
TTTATGTGGCATCTCACTGTTAATAGAATTACAAACATTTGGACATTCTTTCTTACCTAATAATTATAAAGAGTGTGCTC
TCAAAAGCTTGTTAATCTGTCTGTTAACAAGAACATGTAATTAAGCTAGTTTTATGTGGCATCTCACTGTTAATAGAATT
ACAAACATTTGGACATTCTTTCTTACCTAATAATTATAAAGAGTGTACTTTTCTCCATGATTAATTTCAAGTGACCTTAT
CCGATGATCTATGTTTAGCAATTAATTATGACCTTCATTGTCGTGTAGCATATTTTTAGTCAAAAATTGAAATGCTCTAA
CTGTGTACATATATTTCTCTATGATTAATTGGAGGTGTCCTTATCCATTGTCCTATGTTTGGTAAATAATTACAATTGTC
GTTGTTGCGTAGCATATTTTTCTTTAGAGGACATTGATAGACGATTTTACTTTGGACCCCACTTCCATCTATATAAAGGG
TCACCATCCGGTCATTAAAAACACAACTCATATCTTTCTCGAGAGCAATATCTCCTGATAGATATTTCTTGTCATCTAGT
AAAAAATCACTTTAGATCATCTCCACTTTGAGTATGCCCAAGAGAGGGAGGTGGTCTGGTGTGGGGAAGGTTGAGTATGA
GGCGAAGAAGGTAAGGATTGCATTGTTAAAAGAACAGGTAGCCCGGTTAGAGAGAGTGGTTGCGCTGGAGAAAGAGAGAG
CAAAAGAGACCAACCAACGCTTTGAGAAGGCCAAGGAAGAGAGCTCTGGAACTGTGGCCAGGTATCTCTTCATGAATGAA
GAGGATCTTAGCCTTGAGGAGTGCAAGGAGTACTGCCAAGAGCTCATGCGGATCAACCAAGAAATTGCAAATCGATTGTC
CTTAGAGTCCGTGGGCTCAAATGTGCCAGCACTGCAGCTGCACTTGTCTTCAGTCGAATCACAAACTAAGGAAGAAAAGT
AGTGAAACT--CATACCTAGTCCATATGTGGGTCATGTCCCGTTGTTTGAGATATATTACTTATGTTGTCGTGAGGAAAT
AATGGGAAGCC-GCTTATTTAGCAATGAATAAACTTGTTTGAAGTAATACTTGTCACAAATTGAAATTATCCAAGGAAAG
AGTTGTAGTTTAACAAAGAAGGAAAATATTAAAAAAGGGGATTTCTATTTCTGTGCCCTCGGTTCCTTAGTCGTGCTCAG
TTTTTCCCATGGCATCTAACTTTTCTCACTTTTCCCCTCCACCACTTGCCCCATTCTCACAAAATCCCAAACGAAGCCTT
GTTGTTGTGTCCAAGCAGTTGACCGTTACCTGCTCGGTTACTGACGCGTCAGGCCGGGGATCTTAAGACAGGTGGGCCAT
GGCCGTCGATTCT-------------------------------------------------------------------
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>chr7D_384
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------------------------------------------------------------------GTTAGTCCCTCAAG
AAGCTTTGTAACAAAAAAAT-TTGCATAACTAAAGGATAATATCCAGAAACTTACTAATTTATAGATACA-TGGAGATGT
ATTGGTACAATGCACGACATGCTTGGACATTTTAAAAAGTACTATTGCATGGGTTGGTAAAAGTTAATCTTAAATTATCA
TTTATGTGG-ATCTCACTATTAACAAAATTACAAACATTTGGACAATCTTTCTTACCTAACAATTAAAAAGAGTGTGTTC
TCAAAAGCTTGTTAACGTGTCTTTAAACAAGAACATGTAATTAAACCAATTCAATGTTGCAAATGTGTGCA---------
---------------------------------------------TACTTTTCTCCAGTATTAATTTGAAAGGCCCTTAT
CTGACGATCTATGTTTAGCAAATAATTACATCCTTCATTGTCGTGTAGCAT-TTTGTAGCAAAAAATTTAAATGCTCTAA
ATGTGTACATGCTTTTCTCTATGATTAATTCGAGGTGTCCTTATCCAGCAACCTATGTTTAGCTAATAATTACAACCTTT
GTTGTCGTGTAGCATATTGTTCTTTAGAGGATATTGATAAGCGGTTTTAGTTTGGACCCCACTTCCATCTATATAAAGGA
TCACCATCCCCTCTTTCAACCCAAG---CATATCTTTCATAAGATCAATATCTCGAGAAAGATACTTCGAGTCATCTAGT
CCCAGTCAC--TTAGATCATATCCACTTTGAGTATGCCAAAGAGCCGAAGGAGGTCGGGTGTGGAGAAGGTCGAGGATGA
GGTGAAGAAGGTAAGGATTGCATTGTTGGAAGAGGAGATGGCCCAGTTAGGGAGAGAGCTTGCGACACAGAAAGAGAGAG
CAAAAGTGACCAACC-----------------------------------------------------------------
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--
>chr4B_690
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---------------------------------------------------------TACAAATGTCTACA---------
---------------------------------------------TACTTTTCTCCATGCTTAATTTCAAGTGACTTTAT
CCGATGAACTTTGTTTAGAAAATAATTAGATCCTTCATTGTCGTGTAGCATATTTTTAGCCAAAAATTGAAATGCTCTAA
ATGTGTACATACATTTTT-TGTGATTAATTTGACGTGTCCTTATCCAACAACCTATGTTTGGAAAATAGTTACAACCTTC
ATTGTTGTGTAGCATATT-TCCTTTAGGGGACATTGATTAAAGGTTTTACTTTGGACCCCTCTTCCATCTATATAAAGGG
TCACCATCCCCTCTTTCAAACCACAACTCATGTCTTTCTCAGGAGCAATATCTAGAGAAAGATACTTCTAGTCATCTGGT
CACAAATCACTTTAGATCATATCCACTTTGAGTATGACAAAGAGAGGGAGGAGGTCAGGTGTGGGGAAGGTCGAGTATGA
GGCGAAGAAGGTAAGGATTGCGTTGTTGCAAGAGGAGGTAGCCCGGTTAGAAAGAGAGATTGTGGTGGAAAAACAGAGAG
CAAAAGAGACCAACGAACGCTTTGAGAAGGCCAAGGAAGAGAGCTCTGGAACTGTTGCCAGGTATCTCATCATGAATGTA
GAGGATCTTAACCATGAGGAGTGCAAGGAGTACTACCAAGAGCTGATGCGGATCAACCAAGAAATTGAAAATCGGTTGTC
CTTAGAGTCCATGGGATCAAGCATGCCAACCCCACAGCTGCATTTGTCTTCGATGGAATCACAAACAAACGAAGAAAAGT
AGTGAAACTTCCATACCTAGTCCATATGTGGGCCATGTCTTGTCGTTTGAGATATAGTGCTTATGTTGTAGTGAATAAA-
AATGGAC-ACC-ACTTATGCTGCAATGAATAAACTTGATTGAAGTAATACTTGTGACAAATTAAATTTATCCATGGAAAG
AGTTGTAGTTGAACAAAGAACTAAAAGATTAAAAAA--------------------------------------------
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--
>chr4D_690
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---------------------------------------------------------TACAAATGTCTACA---------
---------------------------------------------TGCTTTTCTCCATGCTTAATTTCAAGTGACTTTAT
CCGATGATCTTTGTTTAGAAAATAATTACATCCCTCATTGTCGTGTAGCATGTTTTTAGCCAAAAATTGAAATGCTTTAA
ATGTGTACATACATTTTTCTGTGATTAATTTGACGTGTCCTTATCCAACAACCTATGTTTAGAAAATAATTACAACCTTT
GTTGTTGTGTAGCATATT-TTCTTTAGAGGACATTGATAAAAGGTTTTACTTTGGACCCCACTTCCATCTATATAAAGGG
TCGCCATCCCCTCTTTCAAACCACAACTCGTGTCTTTCTCAAGAGCAATATCTCGAGAAAGATACTTCTAGTCATCTAGT
CACAAATCACTTTAGATCATATCCACTTCCAGTATGCCAAAGAGAGGGAGGAGGTCGGGTGTGGGGAAGGTCGAGTATGA
GGCGAAGAAGGTAAGGATTGCATTGTTGCAAGAGGAGGTAGCCTGGTTAGAAAGAGAGATTGTGGTGGAAAAACAGAGAG
CAAAAGAGACCAACGAACGCTTTGAGAAGGCCAAGGAAGAGAGCACTAGAACTGTTGCCAGGTATCTATTCATGAATTTA
GAGGATCTTAACCATGAGGAGTGCAAGGAGTACTACCAAGAGCTTTTGCGGATCAACCAAGAAATTGCAAATCGGTTGTC
CTTCGAGTCCACGGGCTCAAGCATGCCAACCCCGCAGCTGCATTTGTCTTCGGTGGAATCACAAACGAAGGAAGAAAAGT
AGTGTAACTTCCATACCTAGTCCATATGTGGGCCATGTCCCGTCGATTGAGATATAGTGCTTATGTTGTAGTGAAGAAAT
AATGGAC-ACC-GCTTATGTTGCAATGAATAAACTTGTTTGATGTAATACTTGTGACAAACTATAATTATCCATGAAAAA
AGTTGTAACTGAACAAAGAATTAAAAGATTAAAAAA--------------------------------------------
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--
>chr4A_690
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---------------------------------------------------------TACAAATGTCTACA---------
---------------------------------------------TGCTTTTCTCCATGCTTAATTTCAAGTGACTTTAT
CCGATGATCTTTGTTTAGAAAATAATTACATCCCTCATTGTCGTGTAGCATATTTTTAGCCAAAAATTCAAATGCTTTAA
ATGTGTACATACATTTTTCTGTGATTAATTTGATGTGTCCTTATCCAACAACCTATGTTTAGAAAATAATTAAAACCTTT
GTTGTTGTGTAGCATATT-TTCTTTAGAGGACATTGATAAAAGGTTTTGCTTTGGACCCCACTTCCATCTATATAAAGGG
TCACCATCCCCTCTTTCAAACCATAACTCGTGTCTTCCCCAAGAGCAATATCTCGAGAAGGATACTTCTAGTCATCTAGT
CACAAATCACTTTAGATCATATCCACTTCCAGTATGCCAAAGAGAGGGAGGAGGTCGGGTGTGGGGAAGGTCGAGTATGA
GGCGAAGAAGGTAAGGATTGCGTTGTTGCAAGAGGAGGTAGCCCGGTTAGAAAGAGAGATTGTGGTGGAAAAACAGAGAG
CAAAAGAGACCAATGAACGCTTTGAGAAGGCCAAGGAAGAGAGCGTTGGAACTGTTTCTAGGTATCTCTTCATGAACATA
GAGGATCTTAACCATGAGGAGTGCAAGGAGTACTACCAAGAGTTGATGCGGATCAACCAAGAAATTGCAAATCGGTTGTC
CTTCGAGTCCACGGGCTCAAGCATGCCAACCCCGCAGCTACATGTGTCTTCAGTGGAATCACAAACGAAGGAAGAAAAGT
AGTGAAACTTCCATACCTAGTCCATATGTGGGCCATGTCCCGTCATTTGAGATATAGTGCTTATGTTGCAGTGAAGAAAT
AATGGAC-GCC-GCTTATGTTGCAATGGATAAACTTGTTTGAAGTAATACTTGTGACAAACTAAAATTATCCATAGAAAG
AGTTGTAATGGAACAAAGAATTAGAATATAAAAAAA--------------------------------------------
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>chr5A_1647
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-------------------------------AAAAAGGGGGTTTTATTTTA-GTGCCCCTCCTTCCTTAGTTGTGCTCAG
TTTTGCCCAACCCTCTAACTTTTTCTCACTTTTTCCCTCCAGCGCACGCCTCGTGCTCACAAAGATCCAAATGAAGCCTT
GACGTCTGGTCAAAGGAGTTGAACTTTACCTGCTCAGTTACTGACGTGTGGGGACGAAGATATTAGGATAGGTGGGTCAT
GGCCGTCATAGCTTATGACGAGTGGGACCTGG-CTCGTTGACCTATCCCTTTCTTTTTCCTAAATAAGCCCGACCCAGAG
TGAGTCGCCACATCCCCCATCCAGCCCCACGCCGTTGCCGTGC-CCCCTCACAGCCCCGCCGGCTACTCCGGTCATTTGC
CTGAGCTCTTATGGTGCAATGTCATGGTTCTAACGACCAGCTCTTCCTCCCATATGTCGGAACCATTGGAGATTGTTGGC
TGGCTGGTACTTTTCTAATTCAAACCCTAGCAATTAGGATTCAGTTATAATTTGATTGAATGGGCTACTAAGTGATTAAA
TTGCCATCCTTTGAGTTTCTCCACTTGGCAATCAGTGTGGACGTCAATTTAGGATTGGATTCCTGCCAGCAGTACTAGTG
GCAGCTAGTTTTGAAATAGAAAACCCAAGAAATTAGGTTTTGTTGAATGTAGCCCATTTTAGATTATTCTGTGGTGAATT
TGATCCGAGTAATC----TTGTTTTTAATTCTTTGATTTGCAA--TTGGTGTTTGATTGATGGCAAGTAGGTCGAAGCTA
GAAGAGGGCGATGGATTTGTTTTGTGCCGAGGA-----------------------------------------------
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--
>SNPs
SS-------S-------------SS----S-------SSSS--S-----------S--S-----SS-----------S-S
---------S------S-----S----SS-------SS---------------------------S-S----S--S----
--------------S--------------------SS----S----------S--S-SSSSSSSS----------S--S-
----S---S-----S--------SSSSSSSSSSSSSSSS---------------S-------------------------
S---S------------S---S------------------S--------S------------------------------
--S----------------S-------------S---------S------------------------------S-----
--------------S-----------------------------------------------S-----------------
-------S-----------------------------------S------------------------------------
-S------------------S-----S-----------------------------------------------------
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--S-----------------------------------------------------------------------------
-----------SS-------------------------------------------------------------------
---S--------------------------------------S--------S--------S-------------------
-----S---------------------S---------------S-S----------------------------------
-----------S-----------------------------------S-----S---SS---------------------
---S-------S-----------S---------------------------------------S----------------
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----------SS----------------------------------S---------------------------------
----------------------------S---------S-----------------------------------------
--------------------------------------------------------------------------------
---------S-S-------------------------------------------S------------------------
------------------------------------------------------------------------S----S--
-------------------S-----------------------------------S--------S--------S------
SS-S---------------------------S---------------------S--------------------S-----
----S----------------S-S--------S--S-S---SS--S-S-----S--SS-------S---SSSS---S---
S---S--SSS---------S-S-S---SSSS-SSSSS-SSS-SS-----SS------S----S-S----S-SSS--SSS-
--S-----SS----SS-SSSS-SS--S-----S--SSS---S-----S--------SS-----S--SS--S--S---S--
S-S-S--S-SS--------SS--------S------------SS------S-SS-----------SSS-S--S--S-S--
S-SSSS-SSS-----S-S-----S--S-------S-S---SS--SS---S------------S------SS-S-------
-----------S-----S--------S--------S-----S----SSSS------------------S--------SSS
----SS--SS----SSSS---S-----------------S---SS-----S-------------S-SSS----SS-----
------------------------S----S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_30
----------TAGAGCAAAGAGGCAGTGCG--------------------------------------------------
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>reverse_1841
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CCTCTCGTGTCCAAGCAGTT------------------------------------------------------------
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--
