Multiple sequence alignment - TraesCS2B01G556800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G556800 chr2B 100.000 3979 0 0 1 3979 751538377 751542355 0.000000e+00 7348.0
1 TraesCS2B01G556800 chr2D 91.272 1501 60 22 2114 3561 616578191 616579673 0.000000e+00 1980.0
2 TraesCS2B01G556800 chr2D 84.416 2201 130 87 1 2100 616575957 616578045 0.000000e+00 1967.0
3 TraesCS2B01G556800 chr2D 85.761 309 18 7 3695 3979 616579694 616580000 1.800000e-78 303.0
4 TraesCS2B01G556800 chr2D 93.478 46 1 2 3883 3927 13928452 13928408 2.570000e-07 67.6
5 TraesCS2B01G556800 chr2A 94.857 1011 30 10 2433 3429 746763683 746764685 0.000000e+00 1559.0
6 TraesCS2B01G556800 chr2A 80.706 1871 142 101 13 1785 746761205 746762954 0.000000e+00 1253.0
7 TraesCS2B01G556800 chr2A 87.127 536 44 8 1746 2269 746762962 746763484 5.730000e-163 584.0
8 TraesCS2B01G556800 chr2A 89.286 252 13 5 3741 3979 746764973 746765223 1.800000e-78 303.0
9 TraesCS2B01G556800 chr2A 98.333 120 2 0 3576 3695 12194829 12194948 1.120000e-50 211.0
10 TraesCS2B01G556800 chr2A 92.466 146 7 3 3427 3570 746764782 746764925 5.210000e-49 206.0
11 TraesCS2B01G556800 chr6B 98.438 128 1 1 3570 3697 201322371 201322497 1.440000e-54 224.0
12 TraesCS2B01G556800 chr6B 87.037 54 6 1 3875 3927 279066871 279066924 4.290000e-05 60.2
13 TraesCS2B01G556800 chr5B 98.400 125 2 0 3571 3695 95226624 95226500 1.860000e-53 220.0
14 TraesCS2B01G556800 chr5B 96.800 125 4 0 3571 3695 711915837 711915961 4.030000e-50 209.0
15 TraesCS2B01G556800 chr5B 80.263 76 12 3 3897 3969 636821446 636821521 2.000000e-03 54.7
16 TraesCS2B01G556800 chr4A 97.619 126 3 0 3576 3701 22219680 22219555 2.410000e-52 217.0
17 TraesCS2B01G556800 chr3B 98.374 123 2 0 3573 3695 688439054 688439176 2.410000e-52 217.0
18 TraesCS2B01G556800 chr3B 96.875 128 3 1 3569 3695 730749254 730749127 3.110000e-51 213.0
19 TraesCS2B01G556800 chr6D 97.581 124 3 0 3574 3697 89705741 89705618 3.110000e-51 213.0
20 TraesCS2B01G556800 chr6D 81.373 102 11 7 3871 3966 139381988 139381889 4.260000e-10 76.8
21 TraesCS2B01G556800 chr6D 85.000 60 6 3 3869 3927 89520006 89519949 1.540000e-04 58.4
22 TraesCS2B01G556800 chr3A 96.825 126 4 0 3570 3695 602421507 602421632 1.120000e-50 211.0
23 TraesCS2B01G556800 chr5D 80.734 109 16 3 3870 3973 506108720 506108828 3.300000e-11 80.5
24 TraesCS2B01G556800 chr1D 79.487 78 13 2 3899 3973 476901995 476901918 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G556800 chr2B 751538377 751542355 3978 False 7348.000000 7348 100.000000 1 3979 1 chr2B.!!$F1 3978
1 TraesCS2B01G556800 chr2D 616575957 616580000 4043 False 1416.666667 1980 87.149667 1 3979 3 chr2D.!!$F1 3978
2 TraesCS2B01G556800 chr2A 746761205 746765223 4018 False 781.000000 1559 88.888400 13 3979 5 chr2A.!!$F2 3966

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 544 0.392193 CACACCTCCAGATCTGTGGC 60.392 60.0 23.8 0.0 37.53 5.01 F
1437 1573 0.171903 GCCGTTTCATTCATGCTGCT 59.828 50.0 0.0 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2440 2800 0.309922 CAAGCACAACACAGGAGCAG 59.690 55.0 0.0 0.0 0.0 4.24 R
3014 3454 0.247460 TGAAGGACAGGCACATCTCG 59.753 55.0 0.0 0.0 0.0 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.802051 CCCACCACTCCATGCGGG 62.802 72.222 0.00 0.00 34.21 6.13
76 77 4.933064 CCGATGACGCGCTCCTCC 62.933 72.222 5.73 0.00 38.29 4.30
78 79 3.838271 GATGACGCGCTCCTCCCA 61.838 66.667 5.73 0.00 0.00 4.37
79 80 3.781770 GATGACGCGCTCCTCCCAG 62.782 68.421 5.73 0.00 0.00 4.45
209 227 3.052745 CGTTTGATCCGACGATGATGAT 58.947 45.455 11.28 0.00 41.53 2.45
210 228 3.490896 CGTTTGATCCGACGATGATGATT 59.509 43.478 11.28 0.00 41.53 2.57
211 229 4.679654 CGTTTGATCCGACGATGATGATTA 59.320 41.667 11.28 0.00 41.53 1.75
218 236 4.082190 TCCGACGATGATGATTATCCCTTC 60.082 45.833 0.00 0.00 32.09 3.46
298 326 1.201965 CGGCACAAAATCTCTCTTCGC 60.202 52.381 0.00 0.00 0.00 4.70
299 327 1.131315 GGCACAAAATCTCTCTTCGCC 59.869 52.381 0.00 0.00 0.00 5.54
309 337 2.926242 TCTTCGCCCCTCGGGTTT 60.926 61.111 0.55 0.00 46.51 3.27
320 348 1.165270 CTCGGGTTTGCGGAGAATTT 58.835 50.000 0.00 0.00 0.00 1.82
434 476 2.440946 CTCCCATGGAGTCGGCATA 58.559 57.895 15.22 0.00 44.25 3.14
436 478 1.302033 CCCATGGAGTCGGCATAGC 60.302 63.158 15.22 0.00 0.00 2.97
478 520 1.474879 GAGAGCGCTCATATACCCTCC 59.525 57.143 36.87 8.24 40.96 4.30
480 522 0.969894 AGCGCTCATATACCCTCCAC 59.030 55.000 2.64 0.00 0.00 4.02
497 544 0.392193 CACACCTCCAGATCTGTGGC 60.392 60.000 23.80 0.00 37.53 5.01
521 570 2.136298 TGTAGTCTCTGCCTCCTCAG 57.864 55.000 0.00 0.00 35.46 3.35
577 637 3.815401 ACGCATCTCAACTGCTTTTTACT 59.185 39.130 0.00 0.00 37.48 2.24
588 648 4.202367 ACTGCTTTTTACTCCTGCTAGTGT 60.202 41.667 0.00 0.00 0.00 3.55
589 649 4.065088 TGCTTTTTACTCCTGCTAGTGTG 58.935 43.478 0.00 0.00 0.00 3.82
591 651 4.755123 GCTTTTTACTCCTGCTAGTGTGAA 59.245 41.667 0.00 0.00 0.00 3.18
592 652 5.106908 GCTTTTTACTCCTGCTAGTGTGAAG 60.107 44.000 0.00 0.00 0.00 3.02
603 673 8.144478 TCCTGCTAGTGTGAAGAATAATCATAC 58.856 37.037 0.00 0.00 38.68 2.39
604 674 7.115520 CCTGCTAGTGTGAAGAATAATCATACG 59.884 40.741 0.00 0.00 41.91 3.06
608 678 9.388346 CTAGTGTGAAGAATAATCATACGTCTC 57.612 37.037 0.00 0.00 41.91 3.36
638 708 5.104485 CCTCCTGTTAATTAACCCTAGCTGT 60.104 44.000 22.47 0.00 35.37 4.40
640 710 7.365295 CCTCCTGTTAATTAACCCTAGCTGTTA 60.365 40.741 22.47 0.00 35.37 2.41
642 712 8.384718 TCCTGTTAATTAACCCTAGCTGTTAAA 58.615 33.333 22.47 1.83 40.45 1.52
644 714 9.836076 CTGTTAATTAACCCTAGCTGTTAAAAC 57.164 33.333 22.47 15.43 40.45 2.43
645 715 9.352191 TGTTAATTAACCCTAGCTGTTAAAACA 57.648 29.630 22.47 18.07 40.45 2.83
801 907 6.827586 ACACTCTCGTTTTCTCTCTTATCT 57.172 37.500 0.00 0.00 0.00 1.98
802 908 7.222000 ACACTCTCGTTTTCTCTCTTATCTT 57.778 36.000 0.00 0.00 0.00 2.40
828 934 1.274728 CTGGCACTTCTGTGAGCTAGT 59.725 52.381 0.00 0.00 46.55 2.57
829 935 2.493675 CTGGCACTTCTGTGAGCTAGTA 59.506 50.000 0.00 0.00 46.55 1.82
831 937 2.535331 GCACTTCTGTGAGCTAGTAGC 58.465 52.381 14.62 14.62 46.55 3.58
888 994 1.801178 GTTTTCGCCTCTGTTCTCTGG 59.199 52.381 0.00 0.00 0.00 3.86
918 1024 1.534235 CGGAGGAGGATAGGGTGGG 60.534 68.421 0.00 0.00 0.00 4.61
952 1059 4.503741 TTAGGTGCAACAAAATCTCTGC 57.496 40.909 3.64 0.00 39.98 4.26
1026 1134 1.171308 GGGCGGAGGTTTTAAGGTTC 58.829 55.000 0.00 0.00 0.00 3.62
1038 1146 1.492133 TAAGGTTCCCTGCTGCTGCT 61.492 55.000 17.00 0.00 40.48 4.24
1047 1155 2.050351 GCTGCTGCTTGTGTGCTG 60.050 61.111 8.53 0.00 36.03 4.41
1052 1160 2.517638 TGCTTGTGTGCTGCTGCT 60.518 55.556 17.00 0.00 40.48 4.24
1053 1161 2.050351 GCTTGTGTGCTGCTGCTG 60.050 61.111 17.00 0.77 40.48 4.41
1055 1163 3.553437 CTTGTGTGCTGCTGCTGCC 62.553 63.158 25.44 17.70 40.48 4.85
1056 1164 4.574271 TGTGTGCTGCTGCTGCCT 62.574 61.111 25.44 0.00 40.48 4.75
1057 1165 3.735029 GTGTGCTGCTGCTGCCTC 61.735 66.667 25.44 18.85 40.48 4.70
1058 1166 3.949980 TGTGCTGCTGCTGCCTCT 61.950 61.111 25.44 0.00 40.48 3.69
1077 1190 6.991531 TGCCTCTTCTAACGGTAAAAGTAAAA 59.008 34.615 0.00 0.00 0.00 1.52
1078 1191 7.498570 TGCCTCTTCTAACGGTAAAAGTAAAAA 59.501 33.333 0.00 0.00 0.00 1.94
1103 1216 1.442857 CTCTGACCGACTGACGTGC 60.443 63.158 0.00 0.00 40.78 5.34
1113 1226 2.669670 CGACTGACGTGCTGATTTCTCT 60.670 50.000 0.00 0.00 37.22 3.10
1124 1238 1.339055 TGATTTCTCTTCCTGCCCACG 60.339 52.381 0.00 0.00 0.00 4.94
1125 1239 0.693049 ATTTCTCTTCCTGCCCACGT 59.307 50.000 0.00 0.00 0.00 4.49
1126 1240 0.250295 TTTCTCTTCCTGCCCACGTG 60.250 55.000 9.08 9.08 0.00 4.49
1127 1241 1.407656 TTCTCTTCCTGCCCACGTGT 61.408 55.000 15.65 0.00 0.00 4.49
1128 1242 1.071471 CTCTTCCTGCCCACGTGTT 59.929 57.895 15.65 0.00 0.00 3.32
1141 1255 2.551912 CGTGTTGTGTTCAGCCCCC 61.552 63.158 0.00 0.00 0.00 5.40
1250 1376 0.887387 GCACAGGCACCGAGGTAAAA 60.887 55.000 0.00 0.00 40.72 1.52
1255 1381 0.958876 GGCACCGAGGTAAAACCCAG 60.959 60.000 0.00 0.00 39.75 4.45
1264 1390 4.576879 GAGGTAAAACCCAGACGAAATCT 58.423 43.478 0.00 0.00 39.75 2.40
1265 1391 4.576879 AGGTAAAACCCAGACGAAATCTC 58.423 43.478 0.00 0.00 39.75 2.75
1281 1407 5.729883 CGAAATCTCTGCTACAAAAATCACG 59.270 40.000 0.00 0.00 0.00 4.35
1289 1415 5.297547 TGCTACAAAAATCACGTCTCTCTT 58.702 37.500 0.00 0.00 0.00 2.85
1291 1417 6.260050 TGCTACAAAAATCACGTCTCTCTTTT 59.740 34.615 0.00 0.00 0.00 2.27
1292 1418 6.792726 GCTACAAAAATCACGTCTCTCTTTTC 59.207 38.462 0.00 0.00 0.00 2.29
1294 1420 5.008712 ACAAAAATCACGTCTCTCTTTTCCC 59.991 40.000 0.00 0.00 0.00 3.97
1299 1425 4.777463 TCACGTCTCTCTTTTCCCTTTTT 58.223 39.130 0.00 0.00 0.00 1.94
1302 1428 5.297029 CACGTCTCTCTTTTCCCTTTTTCTT 59.703 40.000 0.00 0.00 0.00 2.52
1303 1429 5.886474 ACGTCTCTCTTTTCCCTTTTTCTTT 59.114 36.000 0.00 0.00 0.00 2.52
1305 1431 6.183360 CGTCTCTCTTTTCCCTTTTTCTTTGT 60.183 38.462 0.00 0.00 0.00 2.83
1306 1432 7.197017 GTCTCTCTTTTCCCTTTTTCTTTGTC 58.803 38.462 0.00 0.00 0.00 3.18
1307 1433 6.038271 TCTCTCTTTTCCCTTTTTCTTTGTCG 59.962 38.462 0.00 0.00 0.00 4.35
1308 1434 5.650703 TCTCTTTTCCCTTTTTCTTTGTCGT 59.349 36.000 0.00 0.00 0.00 4.34
1309 1435 6.152154 TCTCTTTTCCCTTTTTCTTTGTCGTT 59.848 34.615 0.00 0.00 0.00 3.85
1310 1436 7.337436 TCTCTTTTCCCTTTTTCTTTGTCGTTA 59.663 33.333 0.00 0.00 0.00 3.18
1311 1437 8.002984 TCTTTTCCCTTTTTCTTTGTCGTTAT 57.997 30.769 0.00 0.00 0.00 1.89
1312 1438 9.122779 TCTTTTCCCTTTTTCTTTGTCGTTATA 57.877 29.630 0.00 0.00 0.00 0.98
1313 1439 9.177304 CTTTTCCCTTTTTCTTTGTCGTTATAC 57.823 33.333 0.00 0.00 0.00 1.47
1330 1456 8.887052 GTCGTTATACTACTACTATTTTCGTGC 58.113 37.037 0.00 0.00 0.00 5.34
1353 1479 5.401376 GCGGGTTACTTTGATGTTCTTTTTC 59.599 40.000 0.00 0.00 0.00 2.29
1354 1481 6.734871 GCGGGTTACTTTGATGTTCTTTTTCT 60.735 38.462 0.00 0.00 0.00 2.52
1364 1491 3.660865 TGTTCTTTTTCTACCCTCGAGC 58.339 45.455 6.99 0.00 0.00 5.03
1428 1564 4.712122 AAAATATCACGGCCGTTTCATT 57.288 36.364 32.11 23.20 0.00 2.57
1431 1567 1.750193 ATCACGGCCGTTTCATTCAT 58.250 45.000 32.11 8.94 0.00 2.57
1432 1568 0.801872 TCACGGCCGTTTCATTCATG 59.198 50.000 32.11 14.62 0.00 3.07
1433 1569 0.798009 CACGGCCGTTTCATTCATGC 60.798 55.000 32.11 0.00 0.00 4.06
1434 1570 0.960364 ACGGCCGTTTCATTCATGCT 60.960 50.000 28.70 0.00 0.00 3.79
1435 1571 0.523968 CGGCCGTTTCATTCATGCTG 60.524 55.000 19.50 0.00 0.00 4.41
1436 1572 0.803380 GGCCGTTTCATTCATGCTGC 60.803 55.000 0.00 0.00 0.00 5.25
1437 1573 0.171903 GCCGTTTCATTCATGCTGCT 59.828 50.000 0.00 0.00 0.00 4.24
1525 1661 1.359459 CTAGGCTGCGGTTTTCGGTC 61.359 60.000 0.00 0.00 39.69 4.79
1542 1678 3.423154 CGTGGGCTTCAGTTCCGC 61.423 66.667 0.00 0.00 0.00 5.54
1544 1680 4.697756 TGGGCTTCAGTTCCGCGG 62.698 66.667 22.12 22.12 0.00 6.46
1545 1681 4.699522 GGGCTTCAGTTCCGCGGT 62.700 66.667 27.15 1.97 0.00 5.68
1656 1800 2.159234 GCGAATATGCCTTCAGAGATGC 59.841 50.000 0.00 0.00 0.00 3.91
1672 1816 1.265095 GATGCGCTCTCTCTCTCTCTG 59.735 57.143 9.73 0.00 0.00 3.35
1673 1817 0.251634 TGCGCTCTCTCTCTCTCTGA 59.748 55.000 9.73 0.00 0.00 3.27
1776 1986 5.874895 ACGGTTAATCACTTTCTTAAGCC 57.125 39.130 0.00 0.00 33.77 4.35
1834 2044 3.570212 GGCCCCACCTGTCTGTGT 61.570 66.667 0.00 0.00 34.35 3.72
1935 2146 1.765230 TAGGGTCGCTTTCTCCTCTC 58.235 55.000 0.00 0.00 0.00 3.20
2016 2227 2.189594 TGTCATTTCTGTGCTCCCAG 57.810 50.000 0.00 0.00 0.00 4.45
2035 2246 3.254629 CCACAACATGGTCCAGAGG 57.745 57.895 0.00 0.00 44.46 3.69
2036 2247 0.692476 CCACAACATGGTCCAGAGGA 59.308 55.000 0.00 0.00 44.46 3.71
2037 2248 1.339438 CCACAACATGGTCCAGAGGAG 60.339 57.143 0.00 0.00 44.46 3.69
2038 2249 1.625315 CACAACATGGTCCAGAGGAGA 59.375 52.381 0.00 0.00 29.39 3.71
2039 2250 1.905215 ACAACATGGTCCAGAGGAGAG 59.095 52.381 0.00 0.00 29.39 3.20
2069 2286 0.249398 GGTATGGAACTGCGTGGACT 59.751 55.000 0.00 0.00 0.00 3.85
2152 2512 3.477530 GTTGAAGGTAAACTGGCTGAGT 58.522 45.455 0.00 0.00 35.94 3.41
2154 2514 4.967084 TGAAGGTAAACTGGCTGAGTTA 57.033 40.909 0.00 0.00 44.68 2.24
2160 2520 6.349300 AGGTAAACTGGCTGAGTTATATGTG 58.651 40.000 0.00 0.00 44.68 3.21
2273 2633 1.470494 GCTCCTTTCCTGCTAAAGTGC 59.530 52.381 0.00 0.00 35.16 4.40
2275 2635 2.746362 CTCCTTTCCTGCTAAAGTGCTG 59.254 50.000 0.00 0.00 35.16 4.41
2278 2638 2.479566 TTCCTGCTAAAGTGCTGAGG 57.520 50.000 0.00 0.00 34.47 3.86
2279 2639 1.352083 TCCTGCTAAAGTGCTGAGGT 58.648 50.000 0.00 0.00 34.47 3.85
2282 2642 2.497675 CCTGCTAAAGTGCTGAGGTCTA 59.502 50.000 0.00 0.00 34.47 2.59
2292 2652 4.344102 AGTGCTGAGGTCTAACAAACAGTA 59.656 41.667 0.00 0.00 0.00 2.74
2303 2663 1.308047 CAAACAGTACACAGCAGCCA 58.692 50.000 0.00 0.00 0.00 4.75
2338 2698 4.272261 GCAAACAGGGTTGTTGTTTATTGG 59.728 41.667 3.36 0.00 46.54 3.16
2342 2702 3.829601 CAGGGTTGTTGTTTATTGGGCTA 59.170 43.478 0.00 0.00 0.00 3.93
2350 2710 5.125417 TGTTGTTTATTGGGCTATGCTCTTC 59.875 40.000 0.00 0.00 0.00 2.87
2382 2742 8.147058 CACTAATATGAGATGCTGAGTTTACCT 58.853 37.037 0.00 0.00 0.00 3.08
2384 2744 9.202273 CTAATATGAGATGCTGAGTTTACCTTC 57.798 37.037 0.00 0.00 0.00 3.46
2385 2745 4.207891 TGAGATGCTGAGTTTACCTTCC 57.792 45.455 0.00 0.00 0.00 3.46
2387 2747 4.225942 TGAGATGCTGAGTTTACCTTCCAT 59.774 41.667 0.00 0.00 0.00 3.41
2388 2748 5.184892 AGATGCTGAGTTTACCTTCCATT 57.815 39.130 0.00 0.00 0.00 3.16
2391 2751 6.825721 AGATGCTGAGTTTACCTTCCATTAAG 59.174 38.462 0.00 0.00 34.73 1.85
2393 2753 6.539173 TGCTGAGTTTACCTTCCATTAAGAA 58.461 36.000 0.00 0.00 37.38 2.52
2394 2754 6.430000 TGCTGAGTTTACCTTCCATTAAGAAC 59.570 38.462 0.00 0.00 37.38 3.01
2395 2755 6.430000 GCTGAGTTTACCTTCCATTAAGAACA 59.570 38.462 0.00 0.00 37.38 3.18
2396 2756 7.040686 GCTGAGTTTACCTTCCATTAAGAACAA 60.041 37.037 0.00 0.00 37.38 2.83
2397 2757 8.161699 TGAGTTTACCTTCCATTAAGAACAAC 57.838 34.615 0.00 0.00 37.38 3.32
2398 2758 7.229907 TGAGTTTACCTTCCATTAAGAACAACC 59.770 37.037 0.00 0.00 37.38 3.77
2410 2770 7.067372 CCATTAAGAACAACCAATGATCTGCTA 59.933 37.037 0.00 0.00 40.00 3.49
2505 2933 2.488153 GCTTTGGTCTGGATGTTGGTAC 59.512 50.000 0.00 0.00 0.00 3.34
2624 3052 2.983229 ACTGATGCTGGTGATGAAGAC 58.017 47.619 0.00 0.00 0.00 3.01
2792 3220 2.354604 GGAAGAACAAGAGGAGCAGGAG 60.355 54.545 0.00 0.00 0.00 3.69
2815 3243 1.030488 GGAGGAGGTGACGACGATGA 61.030 60.000 0.00 0.00 0.00 2.92
2816 3244 1.025812 GAGGAGGTGACGACGATGAT 58.974 55.000 0.00 0.00 0.00 2.45
2817 3245 0.741326 AGGAGGTGACGACGATGATG 59.259 55.000 0.00 0.00 0.00 3.07
2829 3257 1.400494 ACGATGATGATGACGACGACA 59.600 47.619 0.00 0.88 0.00 4.35
2890 3318 1.153765 TCGCTGCTGAAGACGATGG 60.154 57.895 0.00 0.00 32.12 3.51
2891 3319 1.153765 CGCTGCTGAAGACGATGGA 60.154 57.895 0.00 0.00 0.00 3.41
2915 3343 4.823364 TGGAGTAGAAGAGGAGGATGAT 57.177 45.455 0.00 0.00 0.00 2.45
2933 3373 2.889678 TGATGACGATGATGAGGAGGAG 59.110 50.000 0.00 0.00 0.00 3.69
2939 3379 2.524306 GATGATGAGGAGGAGGACGAT 58.476 52.381 0.00 0.00 0.00 3.73
3014 3454 1.394917 CTGCTTTAGTCACCATGCGAC 59.605 52.381 5.58 5.58 0.00 5.19
3028 3468 2.161486 GCGACGAGATGTGCCTGTC 61.161 63.158 0.00 0.00 0.00 3.51
3069 3509 9.193133 GGAAACTTTCCTTAGAGTTAAAAATGC 57.807 33.333 12.69 0.00 46.57 3.56
3251 3691 0.673985 TATCTCCTTCCGGCATCGTG 59.326 55.000 0.00 0.00 33.95 4.35
3252 3692 1.330655 ATCTCCTTCCGGCATCGTGT 61.331 55.000 0.00 0.00 33.95 4.49
3254 3694 1.079405 TCCTTCCGGCATCGTGTTC 60.079 57.895 0.00 0.00 33.95 3.18
3255 3695 2.106683 CCTTCCGGCATCGTGTTCC 61.107 63.158 0.00 0.00 33.95 3.62
3378 3818 5.617252 TCTGCATAATTCTGCTGATGATGA 58.383 37.500 17.64 0.04 42.77 2.92
3379 3819 5.469084 TCTGCATAATTCTGCTGATGATGAC 59.531 40.000 17.64 6.07 42.77 3.06
3388 3828 5.308825 TCTGCTGATGATGACGACTAGATA 58.691 41.667 0.00 0.00 0.00 1.98
3396 3836 5.696822 TGATGACGACTAGATAATTACGGC 58.303 41.667 0.00 0.00 0.00 5.68
3538 4079 2.092968 GGCTCAGATGTCACACCCATAA 60.093 50.000 0.00 0.00 0.00 1.90
3544 4085 0.953471 TGTCACACCCATAAGCGTGC 60.953 55.000 0.00 0.00 33.09 5.34
3577 4127 0.679002 CACTGATGCCACCCTTCAGG 60.679 60.000 9.90 0.00 45.31 3.86
3582 4132 2.677875 GCCACCCTTCAGGCCTTG 60.678 66.667 0.00 0.00 45.18 3.61
3583 4133 2.846532 CCACCCTTCAGGCCTTGT 59.153 61.111 0.00 0.00 40.58 3.16
3584 4134 1.153756 CCACCCTTCAGGCCTTGTT 59.846 57.895 0.00 0.00 40.58 2.83
3585 4135 0.895559 CCACCCTTCAGGCCTTGTTC 60.896 60.000 0.00 0.00 40.58 3.18
3586 4136 1.073199 ACCCTTCAGGCCTTGTTCG 59.927 57.895 0.00 0.00 40.58 3.95
3587 4137 1.675641 CCCTTCAGGCCTTGTTCGG 60.676 63.158 0.00 0.00 0.00 4.30
3588 4138 1.073199 CCTTCAGGCCTTGTTCGGT 59.927 57.895 0.00 0.00 0.00 4.69
3589 4139 0.537371 CCTTCAGGCCTTGTTCGGTT 60.537 55.000 0.00 0.00 0.00 4.44
3590 4140 1.271163 CCTTCAGGCCTTGTTCGGTTA 60.271 52.381 0.00 0.00 0.00 2.85
3591 4141 1.804748 CTTCAGGCCTTGTTCGGTTAC 59.195 52.381 0.00 0.00 0.00 2.50
3592 4142 0.759959 TCAGGCCTTGTTCGGTTACA 59.240 50.000 0.00 0.00 0.00 2.41
3593 4143 0.872388 CAGGCCTTGTTCGGTTACAC 59.128 55.000 0.00 0.00 0.00 2.90
3594 4144 0.250597 AGGCCTTGTTCGGTTACACC 60.251 55.000 0.00 0.00 34.05 4.16
3595 4145 1.239296 GGCCTTGTTCGGTTACACCC 61.239 60.000 0.00 0.00 33.75 4.61
3596 4146 1.239296 GCCTTGTTCGGTTACACCCC 61.239 60.000 0.00 0.00 33.75 4.95
3597 4147 0.399075 CCTTGTTCGGTTACACCCCT 59.601 55.000 0.00 0.00 33.75 4.79
3598 4148 1.609841 CCTTGTTCGGTTACACCCCTC 60.610 57.143 0.00 0.00 33.75 4.30
3599 4149 0.397564 TTGTTCGGTTACACCCCTCC 59.602 55.000 0.00 0.00 33.75 4.30
3600 4150 0.763604 TGTTCGGTTACACCCCTCCA 60.764 55.000 0.00 0.00 33.75 3.86
3601 4151 0.321034 GTTCGGTTACACCCCTCCAC 60.321 60.000 0.00 0.00 33.75 4.02
3602 4152 0.763604 TTCGGTTACACCCCTCCACA 60.764 55.000 0.00 0.00 33.75 4.17
3603 4153 0.763604 TCGGTTACACCCCTCCACAA 60.764 55.000 0.00 0.00 33.75 3.33
3604 4154 0.321298 CGGTTACACCCCTCCACAAG 60.321 60.000 0.00 0.00 33.75 3.16
3605 4155 1.061546 GGTTACACCCCTCCACAAGA 58.938 55.000 0.00 0.00 30.04 3.02
3606 4156 1.003233 GGTTACACCCCTCCACAAGAG 59.997 57.143 0.00 0.00 42.83 2.85
3616 4166 2.996631 CTCCACAAGAGGATTGAAGGG 58.003 52.381 0.00 0.00 39.13 3.95
3617 4167 1.635487 TCCACAAGAGGATTGAAGGGG 59.365 52.381 0.00 0.00 31.23 4.79
3618 4168 1.635487 CCACAAGAGGATTGAAGGGGA 59.365 52.381 0.00 0.00 0.00 4.81
3619 4169 2.243221 CCACAAGAGGATTGAAGGGGAT 59.757 50.000 0.00 0.00 0.00 3.85
3620 4170 3.309410 CCACAAGAGGATTGAAGGGGATT 60.309 47.826 0.00 0.00 0.00 3.01
3621 4171 4.347607 CACAAGAGGATTGAAGGGGATTT 58.652 43.478 0.00 0.00 0.00 2.17
3622 4172 4.159135 CACAAGAGGATTGAAGGGGATTTG 59.841 45.833 0.00 0.00 0.00 2.32
3623 4173 3.677156 AGAGGATTGAAGGGGATTTGG 57.323 47.619 0.00 0.00 0.00 3.28
3624 4174 2.245806 AGAGGATTGAAGGGGATTTGGG 59.754 50.000 0.00 0.00 0.00 4.12
3625 4175 1.291939 AGGATTGAAGGGGATTTGGGG 59.708 52.381 0.00 0.00 0.00 4.96
3626 4176 1.290732 GGATTGAAGGGGATTTGGGGA 59.709 52.381 0.00 0.00 0.00 4.81
3627 4177 2.670939 GATTGAAGGGGATTTGGGGAG 58.329 52.381 0.00 0.00 0.00 4.30
3628 4178 0.709992 TTGAAGGGGATTTGGGGAGG 59.290 55.000 0.00 0.00 0.00 4.30
3629 4179 0.479589 TGAAGGGGATTTGGGGAGGT 60.480 55.000 0.00 0.00 0.00 3.85
3630 4180 0.710588 GAAGGGGATTTGGGGAGGTT 59.289 55.000 0.00 0.00 0.00 3.50
3631 4181 1.078823 GAAGGGGATTTGGGGAGGTTT 59.921 52.381 0.00 0.00 0.00 3.27
3632 4182 1.176182 AGGGGATTTGGGGAGGTTTT 58.824 50.000 0.00 0.00 0.00 2.43
3633 4183 1.203300 AGGGGATTTGGGGAGGTTTTG 60.203 52.381 0.00 0.00 0.00 2.44
3634 4184 1.203250 GGGGATTTGGGGAGGTTTTGA 60.203 52.381 0.00 0.00 0.00 2.69
3635 4185 1.899814 GGGATTTGGGGAGGTTTTGAC 59.100 52.381 0.00 0.00 0.00 3.18
3636 4186 2.492753 GGGATTTGGGGAGGTTTTGACT 60.493 50.000 0.00 0.00 0.00 3.41
3637 4187 3.239449 GGATTTGGGGAGGTTTTGACTT 58.761 45.455 0.00 0.00 0.00 3.01
3638 4188 3.006859 GGATTTGGGGAGGTTTTGACTTG 59.993 47.826 0.00 0.00 0.00 3.16
3639 4189 2.838637 TTGGGGAGGTTTTGACTTGT 57.161 45.000 0.00 0.00 0.00 3.16
3640 4190 3.955524 TTGGGGAGGTTTTGACTTGTA 57.044 42.857 0.00 0.00 0.00 2.41
3641 4191 3.502123 TGGGGAGGTTTTGACTTGTAG 57.498 47.619 0.00 0.00 0.00 2.74
3642 4192 3.050089 TGGGGAGGTTTTGACTTGTAGA 58.950 45.455 0.00 0.00 0.00 2.59
3643 4193 3.072476 TGGGGAGGTTTTGACTTGTAGAG 59.928 47.826 0.00 0.00 0.00 2.43
3644 4194 3.559384 GGGGAGGTTTTGACTTGTAGAGG 60.559 52.174 0.00 0.00 0.00 3.69
3645 4195 3.326880 GGGAGGTTTTGACTTGTAGAGGA 59.673 47.826 0.00 0.00 0.00 3.71
3646 4196 4.019231 GGGAGGTTTTGACTTGTAGAGGAT 60.019 45.833 0.00 0.00 0.00 3.24
3647 4197 5.515008 GGGAGGTTTTGACTTGTAGAGGATT 60.515 44.000 0.00 0.00 0.00 3.01
3648 4198 6.296259 GGGAGGTTTTGACTTGTAGAGGATTA 60.296 42.308 0.00 0.00 0.00 1.75
3649 4199 7.166167 GGAGGTTTTGACTTGTAGAGGATTAA 58.834 38.462 0.00 0.00 0.00 1.40
3650 4200 7.664318 GGAGGTTTTGACTTGTAGAGGATTAAA 59.336 37.037 0.00 0.00 0.00 1.52
3651 4201 9.232473 GAGGTTTTGACTTGTAGAGGATTAAAT 57.768 33.333 0.00 0.00 0.00 1.40
3652 4202 9.232473 AGGTTTTGACTTGTAGAGGATTAAATC 57.768 33.333 0.00 0.00 0.00 2.17
3667 4217 5.836347 GATTAAATCCACTTCAATCCCTGC 58.164 41.667 0.00 0.00 0.00 4.85
3668 4218 2.149973 AATCCACTTCAATCCCTGCC 57.850 50.000 0.00 0.00 0.00 4.85
3669 4219 1.002069 ATCCACTTCAATCCCTGCCA 58.998 50.000 0.00 0.00 0.00 4.92
3670 4220 0.776810 TCCACTTCAATCCCTGCCAA 59.223 50.000 0.00 0.00 0.00 4.52
3671 4221 1.146774 TCCACTTCAATCCCTGCCAAA 59.853 47.619 0.00 0.00 0.00 3.28
3672 4222 2.181975 CCACTTCAATCCCTGCCAAAT 58.818 47.619 0.00 0.00 0.00 2.32
3673 4223 2.167075 CCACTTCAATCCCTGCCAAATC 59.833 50.000 0.00 0.00 0.00 2.17
3674 4224 2.167075 CACTTCAATCCCTGCCAAATCC 59.833 50.000 0.00 0.00 0.00 3.01
3675 4225 1.758862 CTTCAATCCCTGCCAAATCCC 59.241 52.381 0.00 0.00 0.00 3.85
3676 4226 1.009997 TCAATCCCTGCCAAATCCCT 58.990 50.000 0.00 0.00 0.00 4.20
3677 4227 1.063717 TCAATCCCTGCCAAATCCCTC 60.064 52.381 0.00 0.00 0.00 4.30
3678 4228 1.063417 CAATCCCTGCCAAATCCCTCT 60.063 52.381 0.00 0.00 0.00 3.69
3679 4229 0.849417 ATCCCTGCCAAATCCCTCTC 59.151 55.000 0.00 0.00 0.00 3.20
3680 4230 0.549902 TCCCTGCCAAATCCCTCTCA 60.550 55.000 0.00 0.00 0.00 3.27
3681 4231 0.332632 CCCTGCCAAATCCCTCTCAA 59.667 55.000 0.00 0.00 0.00 3.02
3682 4232 1.467920 CCTGCCAAATCCCTCTCAAC 58.532 55.000 0.00 0.00 0.00 3.18
3683 4233 1.467920 CTGCCAAATCCCTCTCAACC 58.532 55.000 0.00 0.00 0.00 3.77
3684 4234 0.322456 TGCCAAATCCCTCTCAACCG 60.322 55.000 0.00 0.00 0.00 4.44
3685 4235 0.035439 GCCAAATCCCTCTCAACCGA 60.035 55.000 0.00 0.00 0.00 4.69
3686 4236 1.613255 GCCAAATCCCTCTCAACCGAA 60.613 52.381 0.00 0.00 0.00 4.30
3687 4237 2.084546 CCAAATCCCTCTCAACCGAAC 58.915 52.381 0.00 0.00 0.00 3.95
3688 4238 2.552155 CCAAATCCCTCTCAACCGAACA 60.552 50.000 0.00 0.00 0.00 3.18
3689 4239 2.474410 AATCCCTCTCAACCGAACAC 57.526 50.000 0.00 0.00 0.00 3.32
3690 4240 1.348064 ATCCCTCTCAACCGAACACA 58.652 50.000 0.00 0.00 0.00 3.72
3691 4241 0.679505 TCCCTCTCAACCGAACACAG 59.320 55.000 0.00 0.00 0.00 3.66
3692 4242 0.951040 CCCTCTCAACCGAACACAGC 60.951 60.000 0.00 0.00 0.00 4.40
3693 4243 0.951040 CCTCTCAACCGAACACAGCC 60.951 60.000 0.00 0.00 0.00 4.85
3694 4244 0.034059 CTCTCAACCGAACACAGCCT 59.966 55.000 0.00 0.00 0.00 4.58
3695 4245 0.033504 TCTCAACCGAACACAGCCTC 59.966 55.000 0.00 0.00 0.00 4.70
3696 4246 0.249868 CTCAACCGAACACAGCCTCA 60.250 55.000 0.00 0.00 0.00 3.86
3697 4247 0.249868 TCAACCGAACACAGCCTCAG 60.250 55.000 0.00 0.00 0.00 3.35
3698 4248 0.249868 CAACCGAACACAGCCTCAGA 60.250 55.000 0.00 0.00 0.00 3.27
3699 4249 0.034059 AACCGAACACAGCCTCAGAG 59.966 55.000 0.00 0.00 0.00 3.35
3700 4250 0.827925 ACCGAACACAGCCTCAGAGA 60.828 55.000 0.00 0.00 0.00 3.10
3701 4251 0.318441 CCGAACACAGCCTCAGAGAA 59.682 55.000 0.00 0.00 0.00 2.87
3702 4252 1.671261 CCGAACACAGCCTCAGAGAAG 60.671 57.143 0.00 0.00 0.00 2.85
3703 4253 1.000283 CGAACACAGCCTCAGAGAAGT 60.000 52.381 0.00 0.00 0.00 3.01
3704 4254 2.229062 CGAACACAGCCTCAGAGAAGTA 59.771 50.000 0.00 0.00 0.00 2.24
3727 4278 8.125448 AGTAAGCTCATATCAAAAAGAAATCGC 58.875 33.333 0.00 0.00 0.00 4.58
3731 4282 6.571520 GCTCATATCAAAAAGAAATCGCTACG 59.428 38.462 0.00 0.00 0.00 3.51
3746 4300 2.344025 GCTACGTCCCTGTTAGGTTTG 58.656 52.381 0.00 0.00 31.93 2.93
3795 4349 2.203584 AGGCAATCATCCTCTCCAAGT 58.796 47.619 0.00 0.00 0.00 3.16
3842 4400 0.262876 ATGGCAGGAAAAGGATCCCC 59.737 55.000 8.55 1.84 40.59 4.81
3843 4401 1.075970 GGCAGGAAAAGGATCCCCC 60.076 63.158 8.55 5.04 40.59 5.40
3867 4438 5.684626 CGCTAATAGTTTAGGTTAGGTGACG 59.315 44.000 0.00 0.00 36.18 4.35
3894 4465 2.693017 AGAGGATCCCGGTGCTCT 59.307 61.111 8.55 9.92 41.39 4.09
3957 4531 0.465460 GCTATTTGGGTGGATGGCGA 60.465 55.000 0.00 0.00 0.00 5.54
3958 4532 1.819305 GCTATTTGGGTGGATGGCGAT 60.819 52.381 0.00 0.00 0.00 4.58
3974 4548 2.434761 GCGATGTTTCATCTTTGAGCG 58.565 47.619 7.89 0.00 32.27 5.03
3975 4549 2.159653 GCGATGTTTCATCTTTGAGCGT 60.160 45.455 7.89 0.00 32.27 5.07
3976 4550 3.062099 GCGATGTTTCATCTTTGAGCGTA 59.938 43.478 7.89 0.00 32.27 4.42
3977 4551 4.780324 GCGATGTTTCATCTTTGAGCGTAG 60.780 45.833 7.89 0.00 32.27 3.51
3978 4552 4.327357 CGATGTTTCATCTTTGAGCGTAGT 59.673 41.667 7.89 0.00 32.27 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.758251 TCGCACCCGCATGGAGTG 62.758 66.667 0.00 0.00 38.63 3.51
80 81 3.420206 ATACACATGGCCCGGCTGG 62.420 63.158 9.86 3.88 37.09 4.85
81 82 2.188829 CATACACATGGCCCGGCTG 61.189 63.158 9.86 2.95 0.00 4.85
82 83 2.192979 CATACACATGGCCCGGCT 59.807 61.111 9.86 0.00 0.00 5.52
83 84 2.186826 GTCATACACATGGCCCGGC 61.187 63.158 0.00 0.00 30.02 6.13
90 91 1.953559 CCCCGGAAGTCATACACATG 58.046 55.000 0.73 0.00 0.00 3.21
177 195 1.970917 GATCAAACGGCCAGCGTGAG 61.971 60.000 2.24 0.00 0.00 3.51
209 227 0.327191 AGGCGGAAGGGAAGGGATAA 60.327 55.000 0.00 0.00 0.00 1.75
210 228 0.763223 GAGGCGGAAGGGAAGGGATA 60.763 60.000 0.00 0.00 0.00 2.59
211 229 2.042930 AGGCGGAAGGGAAGGGAT 59.957 61.111 0.00 0.00 0.00 3.85
218 236 2.485795 CGAGAGAGAGGCGGAAGGG 61.486 68.421 0.00 0.00 0.00 3.95
299 327 2.536997 ATTCTCCGCAAACCCGAGGG 62.537 60.000 6.63 6.63 42.03 4.30
432 474 0.753262 CAGAACCGGCTAGTGGCTAT 59.247 55.000 0.00 0.00 41.46 2.97
434 476 2.982130 CAGAACCGGCTAGTGGCT 59.018 61.111 0.00 0.00 41.46 4.75
436 478 2.125106 GGCAGAACCGGCTAGTGG 60.125 66.667 0.00 2.01 0.00 4.00
445 487 2.035442 GCTCTCAACGGGCAGAACC 61.035 63.158 0.00 0.00 37.93 3.62
478 520 0.392193 GCCACAGATCTGGAGGTGTG 60.392 60.000 27.29 17.09 40.04 3.82
480 522 1.222936 GGCCACAGATCTGGAGGTG 59.777 63.158 27.29 17.36 33.96 4.00
497 544 1.205893 GGAGGCAGAGACTACAACAGG 59.794 57.143 0.00 0.00 0.00 4.00
545 594 6.542852 GCAGTTGAGATGCGTTAATAAAGAA 58.457 36.000 0.00 0.00 33.31 2.52
577 637 6.544928 TGATTATTCTTCACACTAGCAGGA 57.455 37.500 0.00 0.00 0.00 3.86
588 648 9.302345 GAACAAGAGACGTATGATTATTCTTCA 57.698 33.333 0.00 0.00 0.00 3.02
589 649 8.756864 GGAACAAGAGACGTATGATTATTCTTC 58.243 37.037 0.00 0.00 0.00 2.87
591 651 8.012957 AGGAACAAGAGACGTATGATTATTCT 57.987 34.615 0.00 0.00 0.00 2.40
592 652 7.382759 GGAGGAACAAGAGACGTATGATTATTC 59.617 40.741 0.00 0.00 0.00 1.75
603 673 2.821991 AACAGGAGGAACAAGAGACG 57.178 50.000 0.00 0.00 0.00 4.18
604 674 7.119407 GGTTAATTAACAGGAGGAACAAGAGAC 59.881 40.741 25.59 2.92 37.92 3.36
608 678 6.246163 AGGGTTAATTAACAGGAGGAACAAG 58.754 40.000 25.59 0.00 37.92 3.16
747 822 2.414481 CGAGTGAGAAAATCTGTGCTGG 59.586 50.000 0.00 0.00 0.00 4.85
781 856 7.954786 GCAAAAAGATAAGAGAGAAAACGAGAG 59.045 37.037 0.00 0.00 0.00 3.20
782 857 7.095187 GGCAAAAAGATAAGAGAGAAAACGAGA 60.095 37.037 0.00 0.00 0.00 4.04
801 907 1.136695 CACAGAAGTGCCAGGCAAAAA 59.863 47.619 18.28 0.00 41.47 1.94
802 908 0.746063 CACAGAAGTGCCAGGCAAAA 59.254 50.000 18.28 0.00 41.47 2.44
828 934 3.891977 CAGATGCTTACCACTCCTAGCTA 59.108 47.826 0.00 0.00 34.77 3.32
829 935 2.697751 CAGATGCTTACCACTCCTAGCT 59.302 50.000 0.00 0.00 34.77 3.32
831 937 4.160439 TGAACAGATGCTTACCACTCCTAG 59.840 45.833 0.00 0.00 0.00 3.02
833 939 2.906389 TGAACAGATGCTTACCACTCCT 59.094 45.455 0.00 0.00 0.00 3.69
839 945 6.428159 TCTTTTCTTCTGAACAGATGCTTACC 59.572 38.462 5.34 0.00 35.00 2.85
888 994 4.537433 CCTCCGCTACTGGCAGGC 62.537 72.222 20.34 12.48 41.91 4.85
901 1007 0.029989 AACCCACCCTATCCTCCTCC 60.030 60.000 0.00 0.00 0.00 4.30
902 1008 1.894699 AAACCCACCCTATCCTCCTC 58.105 55.000 0.00 0.00 0.00 3.71
903 1009 2.311841 CAAAAACCCACCCTATCCTCCT 59.688 50.000 0.00 0.00 0.00 3.69
918 1024 6.212955 TGTTGCACCTAATTCTAGCAAAAAC 58.787 36.000 0.00 0.00 45.46 2.43
1026 1134 2.596631 ACACAAGCAGCAGCAGGG 60.597 61.111 3.17 0.00 45.49 4.45
1038 1146 3.598715 GGCAGCAGCAGCACACAA 61.599 61.111 12.41 0.00 45.49 3.33
1047 1155 1.086634 CCGTTAGAAGAGGCAGCAGC 61.087 60.000 0.00 0.00 41.10 5.25
1052 1160 4.612264 ACTTTTACCGTTAGAAGAGGCA 57.388 40.909 0.00 0.00 0.00 4.75
1053 1161 7.425577 TTTTACTTTTACCGTTAGAAGAGGC 57.574 36.000 0.00 0.00 0.00 4.70
1055 1163 9.049523 AGGTTTTTACTTTTACCGTTAGAAGAG 57.950 33.333 0.00 0.00 35.80 2.85
1056 1164 8.962884 AGGTTTTTACTTTTACCGTTAGAAGA 57.037 30.769 0.00 0.00 35.80 2.87
1077 1190 3.444388 GTCAGTCGGTCAGAGATAAGGTT 59.556 47.826 0.00 0.00 0.00 3.50
1078 1191 3.018149 GTCAGTCGGTCAGAGATAAGGT 58.982 50.000 0.00 0.00 0.00 3.50
1092 1205 1.651138 GAGAAATCAGCACGTCAGTCG 59.349 52.381 0.00 0.00 46.00 4.18
1103 1216 2.363683 GTGGGCAGGAAGAGAAATCAG 58.636 52.381 0.00 0.00 0.00 2.90
1113 1226 1.821759 CACAACACGTGGGCAGGAA 60.822 57.895 21.57 0.00 42.34 3.36
1124 1238 2.551912 CGGGGGCTGAACACAACAC 61.552 63.158 0.00 0.00 0.00 3.32
1125 1239 2.203280 CGGGGGCTGAACACAACA 60.203 61.111 0.00 0.00 0.00 3.33
1126 1240 3.670377 GCGGGGGCTGAACACAAC 61.670 66.667 0.00 0.00 0.00 3.32
1127 1241 4.196778 TGCGGGGGCTGAACACAA 62.197 61.111 0.00 0.00 0.00 3.33
1128 1242 4.641645 CTGCGGGGGCTGAACACA 62.642 66.667 0.00 0.00 0.00 3.72
1235 1361 1.377612 GGGTTTTACCTCGGTGCCT 59.622 57.895 0.00 0.00 38.64 4.75
1250 1376 1.270907 AGCAGAGATTTCGTCTGGGT 58.729 50.000 2.48 0.00 41.60 4.51
1255 1381 6.738649 GTGATTTTTGTAGCAGAGATTTCGTC 59.261 38.462 0.00 0.00 0.00 4.20
1264 1390 4.883083 AGAGACGTGATTTTTGTAGCAGA 58.117 39.130 0.00 0.00 0.00 4.26
1265 1391 4.926238 AGAGAGACGTGATTTTTGTAGCAG 59.074 41.667 0.00 0.00 0.00 4.24
1281 1407 7.101652 ACAAAGAAAAAGGGAAAAGAGAGAC 57.898 36.000 0.00 0.00 0.00 3.36
1289 1415 8.454570 AGTATAACGACAAAGAAAAAGGGAAA 57.545 30.769 0.00 0.00 0.00 3.13
1291 1417 8.370182 AGTAGTATAACGACAAAGAAAAAGGGA 58.630 33.333 0.00 0.00 0.00 4.20
1292 1418 8.543862 AGTAGTATAACGACAAAGAAAAAGGG 57.456 34.615 0.00 0.00 0.00 3.95
1303 1429 9.920826 CACGAAAATAGTAGTAGTATAACGACA 57.079 33.333 17.29 0.00 0.00 4.35
1305 1431 7.793888 CGCACGAAAATAGTAGTAGTATAACGA 59.206 37.037 17.29 0.00 0.00 3.85
1306 1432 7.058806 CCGCACGAAAATAGTAGTAGTATAACG 59.941 40.741 0.00 7.19 0.00 3.18
1307 1433 7.324616 CCCGCACGAAAATAGTAGTAGTATAAC 59.675 40.741 0.00 0.00 0.00 1.89
1308 1434 7.013274 ACCCGCACGAAAATAGTAGTAGTATAA 59.987 37.037 0.00 0.00 0.00 0.98
1309 1435 6.486657 ACCCGCACGAAAATAGTAGTAGTATA 59.513 38.462 0.00 0.00 0.00 1.47
1310 1436 5.300286 ACCCGCACGAAAATAGTAGTAGTAT 59.700 40.000 0.00 0.00 0.00 2.12
1311 1437 4.640201 ACCCGCACGAAAATAGTAGTAGTA 59.360 41.667 0.00 0.00 0.00 1.82
1312 1438 3.445096 ACCCGCACGAAAATAGTAGTAGT 59.555 43.478 0.00 0.00 0.00 2.73
1313 1439 4.037858 ACCCGCACGAAAATAGTAGTAG 57.962 45.455 0.00 0.00 0.00 2.57
1330 1456 6.735130 AGAAAAAGAACATCAAAGTAACCCG 58.265 36.000 0.00 0.00 0.00 5.28
1353 1479 1.593750 GCATGCTGCTCGAGGGTAG 60.594 63.158 15.58 0.00 40.96 3.18
1354 1481 2.501128 GCATGCTGCTCGAGGGTA 59.499 61.111 15.58 0.00 40.96 3.69
1424 1560 2.297880 ACAAAAGCAGCAGCATGAATGA 59.702 40.909 3.17 0.00 45.49 2.57
1428 1564 1.541147 GGTACAAAAGCAGCAGCATGA 59.459 47.619 3.17 0.00 45.49 3.07
1431 1567 0.817634 ACGGTACAAAAGCAGCAGCA 60.818 50.000 3.17 0.00 45.49 4.41
1432 1568 0.310854 AACGGTACAAAAGCAGCAGC 59.689 50.000 0.00 0.00 42.56 5.25
1433 1569 1.333619 ACAACGGTACAAAAGCAGCAG 59.666 47.619 0.00 0.00 0.00 4.24
1434 1570 1.064803 CACAACGGTACAAAAGCAGCA 59.935 47.619 0.00 0.00 0.00 4.41
1435 1571 1.332375 TCACAACGGTACAAAAGCAGC 59.668 47.619 0.00 0.00 0.00 5.25
1436 1572 2.869801 TCTCACAACGGTACAAAAGCAG 59.130 45.455 0.00 0.00 0.00 4.24
1437 1573 2.869801 CTCTCACAACGGTACAAAAGCA 59.130 45.455 0.00 0.00 0.00 3.91
1525 1661 3.423154 GCGGAACTGAAGCCCACG 61.423 66.667 0.00 0.00 0.00 4.94
1816 2026 3.569210 CACAGACAGGTGGGGCCA 61.569 66.667 4.39 0.00 40.61 5.36
1852 2062 1.202651 ACAGAAAAGTCCCCTGTGTCG 60.203 52.381 0.00 0.00 39.43 4.35
1935 2146 1.608590 GTGGACAAACATGGACAGTGG 59.391 52.381 0.00 0.00 0.00 4.00
2035 2246 6.041069 AGTTCCATACCTTGTATGCTACTCTC 59.959 42.308 8.40 0.00 0.00 3.20
2036 2247 5.900123 AGTTCCATACCTTGTATGCTACTCT 59.100 40.000 8.40 1.34 0.00 3.24
2037 2248 5.986135 CAGTTCCATACCTTGTATGCTACTC 59.014 44.000 8.40 0.00 0.00 2.59
2038 2249 5.685075 GCAGTTCCATACCTTGTATGCTACT 60.685 44.000 8.40 9.84 0.00 2.57
2039 2250 4.511826 GCAGTTCCATACCTTGTATGCTAC 59.488 45.833 8.40 8.17 0.00 3.58
2069 2286 2.969821 ACCTCCATAACCACAAGCAA 57.030 45.000 0.00 0.00 0.00 3.91
2160 2520 9.612620 CTGAACAACCTCAGTTTCATTATTTAC 57.387 33.333 0.00 0.00 38.43 2.01
2169 2529 2.576615 AGGCTGAACAACCTCAGTTTC 58.423 47.619 2.81 0.00 44.04 2.78
2244 2604 0.545646 AGGAAAGGAGCAGATCAGCC 59.454 55.000 6.46 0.00 34.23 4.85
2249 2609 3.265479 ACTTTAGCAGGAAAGGAGCAGAT 59.735 43.478 9.66 0.00 40.17 2.90
2273 2633 5.597806 TGTGTACTGTTTGTTAGACCTCAG 58.402 41.667 0.00 0.00 0.00 3.35
2275 2635 4.448060 GCTGTGTACTGTTTGTTAGACCTC 59.552 45.833 0.00 0.00 0.00 3.85
2278 2638 4.318831 GCTGCTGTGTACTGTTTGTTAGAC 60.319 45.833 0.00 0.00 0.00 2.59
2279 2639 3.807622 GCTGCTGTGTACTGTTTGTTAGA 59.192 43.478 0.00 0.00 0.00 2.10
2282 2642 1.676006 GGCTGCTGTGTACTGTTTGTT 59.324 47.619 0.00 0.00 0.00 2.83
2292 2652 1.630369 TCCTAGAATTGGCTGCTGTGT 59.370 47.619 0.00 0.00 0.00 3.72
2303 2663 5.717119 ACCCTGTTTGCTATCCTAGAATT 57.283 39.130 0.00 0.00 0.00 2.17
2338 2698 1.939255 GTGAGCAAGAAGAGCATAGCC 59.061 52.381 0.00 0.00 0.00 3.93
2342 2702 6.824553 TCATATTAGTGAGCAAGAAGAGCAT 58.175 36.000 0.00 0.00 0.00 3.79
2350 2710 6.221659 TCAGCATCTCATATTAGTGAGCAAG 58.778 40.000 0.00 0.00 44.15 4.01
2382 2742 7.577426 GCAGATCATTGGTTGTTCTTAATGGAA 60.577 37.037 0.00 0.00 33.07 3.53
2384 2744 6.038356 GCAGATCATTGGTTGTTCTTAATGG 58.962 40.000 0.00 0.00 33.07 3.16
2385 2745 6.860080 AGCAGATCATTGGTTGTTCTTAATG 58.140 36.000 0.00 0.00 33.07 1.90
2387 2747 6.374333 GGTAGCAGATCATTGGTTGTTCTTAA 59.626 38.462 0.00 0.00 33.07 1.85
2388 2748 5.880332 GGTAGCAGATCATTGGTTGTTCTTA 59.120 40.000 0.00 0.00 33.07 2.10
2391 2751 4.009675 TGGTAGCAGATCATTGGTTGTTC 58.990 43.478 0.00 0.00 0.00 3.18
2393 2753 3.719268 TGGTAGCAGATCATTGGTTGT 57.281 42.857 0.00 0.00 0.00 3.32
2394 2754 3.243301 GCATGGTAGCAGATCATTGGTTG 60.243 47.826 0.00 0.00 0.00 3.77
2395 2755 2.954318 GCATGGTAGCAGATCATTGGTT 59.046 45.455 0.00 0.00 0.00 3.67
2396 2756 2.579873 GCATGGTAGCAGATCATTGGT 58.420 47.619 0.00 0.00 0.00 3.67
2397 2757 1.884579 GGCATGGTAGCAGATCATTGG 59.115 52.381 0.00 0.00 35.83 3.16
2398 2758 1.884579 GGGCATGGTAGCAGATCATTG 59.115 52.381 0.00 0.00 35.83 2.82
2410 2770 2.042979 AGTCAATAACAAGGGGCATGGT 59.957 45.455 0.00 0.00 0.00 3.55
2440 2800 0.309922 CAAGCACAACACAGGAGCAG 59.690 55.000 0.00 0.00 0.00 4.24
2443 2821 0.664761 CCACAAGCACAACACAGGAG 59.335 55.000 0.00 0.00 0.00 3.69
2446 2824 1.037030 ACCCCACAAGCACAACACAG 61.037 55.000 0.00 0.00 0.00 3.66
2505 2933 5.700832 TCAGGCAAACATAGTTAAGTCACAG 59.299 40.000 0.00 0.00 0.00 3.66
2624 3052 1.951130 CCCGTCATCATCTTCGCCG 60.951 63.158 0.00 0.00 0.00 6.46
2792 3220 2.283676 TCGTCACCTCCTCCACCC 60.284 66.667 0.00 0.00 0.00 4.61
2815 3243 1.614385 GTCGTTGTCGTCGTCATCAT 58.386 50.000 0.00 0.00 38.33 2.45
2816 3244 0.723459 CGTCGTTGTCGTCGTCATCA 60.723 55.000 0.00 0.00 41.73 3.07
2817 3245 0.451628 TCGTCGTTGTCGTCGTCATC 60.452 55.000 7.05 0.00 45.27 2.92
2829 3257 2.607187 GTCCTCATTGTCATCGTCGTT 58.393 47.619 0.00 0.00 0.00 3.85
2890 3318 4.447138 TCCTCCTCTTCTACTCCATCTC 57.553 50.000 0.00 0.00 0.00 2.75
2891 3319 4.418526 TCATCCTCCTCTTCTACTCCATCT 59.581 45.833 0.00 0.00 0.00 2.90
2915 3343 1.215423 TCCTCCTCCTCATCATCGTCA 59.785 52.381 0.00 0.00 0.00 4.35
2933 3373 1.357334 GAGCGAGTCCTCATCGTCC 59.643 63.158 0.00 0.00 42.13 4.79
3014 3454 0.247460 TGAAGGACAGGCACATCTCG 59.753 55.000 0.00 0.00 0.00 4.04
3028 3468 3.545703 AGTTTCCAGAACACAGTGAAGG 58.454 45.455 7.81 3.41 0.00 3.46
3069 3509 0.322456 ACATTGTGATCGTGTGGGGG 60.322 55.000 0.00 0.00 0.00 5.40
3251 3691 2.548057 TCTGAACAAGATTGCACGGAAC 59.452 45.455 0.00 0.00 0.00 3.62
3252 3692 2.844946 TCTGAACAAGATTGCACGGAA 58.155 42.857 0.00 0.00 0.00 4.30
3254 3694 2.290367 TGTTCTGAACAAGATTGCACGG 59.710 45.455 20.14 0.00 38.72 4.94
3255 3695 3.242706 TGTGTTCTGAACAAGATTGCACG 60.243 43.478 23.55 0.00 44.16 5.34
3378 3818 5.839621 ACATTGCCGTAATTATCTAGTCGT 58.160 37.500 0.00 0.00 0.00 4.34
3379 3819 6.150318 AGACATTGCCGTAATTATCTAGTCG 58.850 40.000 0.00 0.00 0.00 4.18
3388 3828 7.495934 GCCATATATCTAGACATTGCCGTAATT 59.504 37.037 0.00 0.00 0.00 1.40
3396 3836 9.935241 ACTAACAAGCCATATATCTAGACATTG 57.065 33.333 0.00 0.00 0.00 2.82
3538 4079 1.893786 CACCTTCCTAGAGCACGCT 59.106 57.895 0.00 0.00 0.00 5.07
3544 4085 1.561643 TCAGTGGCACCTTCCTAGAG 58.438 55.000 15.27 0.00 0.00 2.43
3585 4135 4.562142 CTCTTGTGGAGGGGTGTAACCG 62.562 59.091 0.00 0.00 45.67 4.44
3586 4136 1.003233 CTCTTGTGGAGGGGTGTAACC 59.997 57.143 0.00 0.00 44.66 2.85
3587 4137 2.474410 CTCTTGTGGAGGGGTGTAAC 57.526 55.000 0.00 0.00 38.35 2.50
3596 4146 2.356535 CCCCTTCAATCCTCTTGTGGAG 60.357 54.545 0.00 0.00 39.78 3.86
3597 4147 1.635487 CCCCTTCAATCCTCTTGTGGA 59.365 52.381 0.00 0.00 40.82 4.02
3598 4148 1.635487 TCCCCTTCAATCCTCTTGTGG 59.365 52.381 0.00 0.00 0.00 4.17
3599 4149 3.659183 ATCCCCTTCAATCCTCTTGTG 57.341 47.619 0.00 0.00 0.00 3.33
3600 4150 4.347607 CAAATCCCCTTCAATCCTCTTGT 58.652 43.478 0.00 0.00 0.00 3.16
3601 4151 3.703052 CCAAATCCCCTTCAATCCTCTTG 59.297 47.826 0.00 0.00 0.00 3.02
3602 4152 3.310141 CCCAAATCCCCTTCAATCCTCTT 60.310 47.826 0.00 0.00 0.00 2.85
3603 4153 2.245806 CCCAAATCCCCTTCAATCCTCT 59.754 50.000 0.00 0.00 0.00 3.69
3604 4154 2.670939 CCCAAATCCCCTTCAATCCTC 58.329 52.381 0.00 0.00 0.00 3.71
3605 4155 1.291939 CCCCAAATCCCCTTCAATCCT 59.708 52.381 0.00 0.00 0.00 3.24
3606 4156 1.290732 TCCCCAAATCCCCTTCAATCC 59.709 52.381 0.00 0.00 0.00 3.01
3607 4157 2.670939 CTCCCCAAATCCCCTTCAATC 58.329 52.381 0.00 0.00 0.00 2.67
3608 4158 1.291939 CCTCCCCAAATCCCCTTCAAT 59.708 52.381 0.00 0.00 0.00 2.57
3609 4159 0.709992 CCTCCCCAAATCCCCTTCAA 59.290 55.000 0.00 0.00 0.00 2.69
3610 4160 0.479589 ACCTCCCCAAATCCCCTTCA 60.480 55.000 0.00 0.00 0.00 3.02
3611 4161 0.710588 AACCTCCCCAAATCCCCTTC 59.289 55.000 0.00 0.00 0.00 3.46
3612 4162 1.176182 AAACCTCCCCAAATCCCCTT 58.824 50.000 0.00 0.00 0.00 3.95
3613 4163 1.176182 AAAACCTCCCCAAATCCCCT 58.824 50.000 0.00 0.00 0.00 4.79
3614 4164 1.203250 TCAAAACCTCCCCAAATCCCC 60.203 52.381 0.00 0.00 0.00 4.81
3615 4165 1.899814 GTCAAAACCTCCCCAAATCCC 59.100 52.381 0.00 0.00 0.00 3.85
3616 4166 2.889512 AGTCAAAACCTCCCCAAATCC 58.110 47.619 0.00 0.00 0.00 3.01
3617 4167 3.641436 ACAAGTCAAAACCTCCCCAAATC 59.359 43.478 0.00 0.00 0.00 2.17
3618 4168 3.653164 ACAAGTCAAAACCTCCCCAAAT 58.347 40.909 0.00 0.00 0.00 2.32
3619 4169 3.108847 ACAAGTCAAAACCTCCCCAAA 57.891 42.857 0.00 0.00 0.00 3.28
3620 4170 2.838637 ACAAGTCAAAACCTCCCCAA 57.161 45.000 0.00 0.00 0.00 4.12
3621 4171 3.050089 TCTACAAGTCAAAACCTCCCCA 58.950 45.455 0.00 0.00 0.00 4.96
3622 4172 3.559384 CCTCTACAAGTCAAAACCTCCCC 60.559 52.174 0.00 0.00 0.00 4.81
3623 4173 3.326880 TCCTCTACAAGTCAAAACCTCCC 59.673 47.826 0.00 0.00 0.00 4.30
3624 4174 4.618920 TCCTCTACAAGTCAAAACCTCC 57.381 45.455 0.00 0.00 0.00 4.30
3625 4175 8.617290 TTTAATCCTCTACAAGTCAAAACCTC 57.383 34.615 0.00 0.00 0.00 3.85
3626 4176 9.232473 GATTTAATCCTCTACAAGTCAAAACCT 57.768 33.333 0.00 0.00 0.00 3.50
3627 4177 8.459635 GGATTTAATCCTCTACAAGTCAAAACC 58.540 37.037 16.16 0.00 46.19 3.27
3644 4194 5.221322 GGCAGGGATTGAAGTGGATTTAATC 60.221 44.000 0.00 0.00 41.11 1.75
3645 4195 4.651045 GGCAGGGATTGAAGTGGATTTAAT 59.349 41.667 0.00 0.00 30.25 1.40
3646 4196 4.023291 GGCAGGGATTGAAGTGGATTTAA 58.977 43.478 0.00 0.00 0.00 1.52
3647 4197 3.011144 TGGCAGGGATTGAAGTGGATTTA 59.989 43.478 0.00 0.00 0.00 1.40
3648 4198 2.225343 TGGCAGGGATTGAAGTGGATTT 60.225 45.455 0.00 0.00 0.00 2.17
3649 4199 1.358787 TGGCAGGGATTGAAGTGGATT 59.641 47.619 0.00 0.00 0.00 3.01
3650 4200 1.002069 TGGCAGGGATTGAAGTGGAT 58.998 50.000 0.00 0.00 0.00 3.41
3651 4201 0.776810 TTGGCAGGGATTGAAGTGGA 59.223 50.000 0.00 0.00 0.00 4.02
3652 4202 1.631405 TTTGGCAGGGATTGAAGTGG 58.369 50.000 0.00 0.00 0.00 4.00
3653 4203 2.167075 GGATTTGGCAGGGATTGAAGTG 59.833 50.000 0.00 0.00 0.00 3.16
3654 4204 2.460669 GGATTTGGCAGGGATTGAAGT 58.539 47.619 0.00 0.00 0.00 3.01
3655 4205 1.758862 GGGATTTGGCAGGGATTGAAG 59.241 52.381 0.00 0.00 0.00 3.02
3656 4206 1.362237 AGGGATTTGGCAGGGATTGAA 59.638 47.619 0.00 0.00 0.00 2.69
3657 4207 1.009997 AGGGATTTGGCAGGGATTGA 58.990 50.000 0.00 0.00 0.00 2.57
3658 4208 1.063417 AGAGGGATTTGGCAGGGATTG 60.063 52.381 0.00 0.00 0.00 2.67
3659 4209 1.216427 GAGAGGGATTTGGCAGGGATT 59.784 52.381 0.00 0.00 0.00 3.01
3660 4210 0.849417 GAGAGGGATTTGGCAGGGAT 59.151 55.000 0.00 0.00 0.00 3.85
3661 4211 0.549902 TGAGAGGGATTTGGCAGGGA 60.550 55.000 0.00 0.00 0.00 4.20
3662 4212 0.332632 TTGAGAGGGATTTGGCAGGG 59.667 55.000 0.00 0.00 0.00 4.45
3663 4213 1.467920 GTTGAGAGGGATTTGGCAGG 58.532 55.000 0.00 0.00 0.00 4.85
3664 4214 1.467920 GGTTGAGAGGGATTTGGCAG 58.532 55.000 0.00 0.00 0.00 4.85
3665 4215 0.322456 CGGTTGAGAGGGATTTGGCA 60.322 55.000 0.00 0.00 0.00 4.92
3666 4216 0.035439 TCGGTTGAGAGGGATTTGGC 60.035 55.000 0.00 0.00 0.00 4.52
3667 4217 2.084546 GTTCGGTTGAGAGGGATTTGG 58.915 52.381 0.00 0.00 0.00 3.28
3668 4218 2.484264 GTGTTCGGTTGAGAGGGATTTG 59.516 50.000 0.00 0.00 0.00 2.32
3669 4219 2.105821 TGTGTTCGGTTGAGAGGGATTT 59.894 45.455 0.00 0.00 0.00 2.17
3670 4220 1.697432 TGTGTTCGGTTGAGAGGGATT 59.303 47.619 0.00 0.00 0.00 3.01
3671 4221 1.276421 CTGTGTTCGGTTGAGAGGGAT 59.724 52.381 0.00 0.00 0.00 3.85
3672 4222 0.679505 CTGTGTTCGGTTGAGAGGGA 59.320 55.000 0.00 0.00 0.00 4.20
3673 4223 0.951040 GCTGTGTTCGGTTGAGAGGG 60.951 60.000 0.00 0.00 0.00 4.30
3674 4224 0.951040 GGCTGTGTTCGGTTGAGAGG 60.951 60.000 0.00 0.00 0.00 3.69
3675 4225 0.034059 AGGCTGTGTTCGGTTGAGAG 59.966 55.000 0.00 0.00 0.00 3.20
3676 4226 0.033504 GAGGCTGTGTTCGGTTGAGA 59.966 55.000 0.00 0.00 0.00 3.27
3677 4227 0.249868 TGAGGCTGTGTTCGGTTGAG 60.250 55.000 0.00 0.00 0.00 3.02
3678 4228 0.249868 CTGAGGCTGTGTTCGGTTGA 60.250 55.000 0.00 0.00 0.00 3.18
3679 4229 0.249868 TCTGAGGCTGTGTTCGGTTG 60.250 55.000 0.00 0.00 0.00 3.77
3680 4230 0.034059 CTCTGAGGCTGTGTTCGGTT 59.966 55.000 0.00 0.00 0.00 4.44
3681 4231 0.827925 TCTCTGAGGCTGTGTTCGGT 60.828 55.000 4.59 0.00 0.00 4.69
3682 4232 0.318441 TTCTCTGAGGCTGTGTTCGG 59.682 55.000 4.59 0.00 0.00 4.30
3683 4233 1.000283 ACTTCTCTGAGGCTGTGTTCG 60.000 52.381 4.59 0.00 0.00 3.95
3684 4234 2.829741 ACTTCTCTGAGGCTGTGTTC 57.170 50.000 4.59 0.00 0.00 3.18
3685 4235 3.556004 GCTTACTTCTCTGAGGCTGTGTT 60.556 47.826 4.59 0.00 0.00 3.32
3686 4236 2.028567 GCTTACTTCTCTGAGGCTGTGT 60.029 50.000 4.59 0.46 0.00 3.72
3687 4237 2.233431 AGCTTACTTCTCTGAGGCTGTG 59.767 50.000 4.59 0.00 0.00 3.66
3688 4238 2.495669 GAGCTTACTTCTCTGAGGCTGT 59.504 50.000 8.29 6.11 0.00 4.40
3689 4239 2.495270 TGAGCTTACTTCTCTGAGGCTG 59.505 50.000 8.29 0.93 0.00 4.85
3690 4240 2.813907 TGAGCTTACTTCTCTGAGGCT 58.186 47.619 4.59 4.22 0.00 4.58
3691 4241 3.817709 ATGAGCTTACTTCTCTGAGGC 57.182 47.619 4.59 0.00 0.00 4.70
3692 4242 6.647334 TGATATGAGCTTACTTCTCTGAGG 57.353 41.667 4.59 0.00 0.00 3.86
3693 4243 8.939201 TTTTGATATGAGCTTACTTCTCTGAG 57.061 34.615 0.00 0.00 0.00 3.35
3694 4244 9.376075 CTTTTTGATATGAGCTTACTTCTCTGA 57.624 33.333 0.00 0.00 0.00 3.27
3695 4245 9.376075 TCTTTTTGATATGAGCTTACTTCTCTG 57.624 33.333 0.00 0.00 0.00 3.35
3696 4246 9.950496 TTCTTTTTGATATGAGCTTACTTCTCT 57.050 29.630 0.00 0.00 0.00 3.10
3700 4250 9.994432 CGATTTCTTTTTGATATGAGCTTACTT 57.006 29.630 0.00 0.00 0.00 2.24
3701 4251 8.125448 GCGATTTCTTTTTGATATGAGCTTACT 58.875 33.333 0.00 0.00 0.00 2.24
3702 4252 8.125448 AGCGATTTCTTTTTGATATGAGCTTAC 58.875 33.333 0.00 0.00 29.60 2.34
3703 4253 8.213518 AGCGATTTCTTTTTGATATGAGCTTA 57.786 30.769 0.00 0.00 29.60 3.09
3704 4254 7.093322 AGCGATTTCTTTTTGATATGAGCTT 57.907 32.000 0.00 0.00 29.60 3.74
3727 4278 3.672767 ACAAACCTAACAGGGACGTAG 57.327 47.619 0.00 0.00 40.58 3.51
3731 4282 4.202182 GGGAAAAACAAACCTAACAGGGAC 60.202 45.833 0.00 0.00 40.58 4.46
3772 4326 4.141528 ACTTGGAGAGGATGATTGCCTTAG 60.142 45.833 0.00 0.00 35.44 2.18
3795 4349 1.422024 TCCATGGGTTCCTTGACGAAA 59.578 47.619 13.02 0.00 31.33 3.46
3822 4376 1.697284 GGGATCCTTTTCCTGCCATC 58.303 55.000 12.58 0.00 35.97 3.51
3842 4400 5.981915 GTCACCTAACCTAAACTATTAGCGG 59.018 44.000 0.00 0.00 37.74 5.52
3843 4401 5.684626 CGTCACCTAACCTAAACTATTAGCG 59.315 44.000 0.00 0.00 37.74 4.26
3867 4438 3.551407 GATCCTCTCCCGCCACCC 61.551 72.222 0.00 0.00 0.00 4.61
3894 4465 2.029623 CTAAACTACTAGCCGGAGCCA 58.970 52.381 5.05 0.00 41.25 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.