>input_sequence_40015
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-------------------------------------------------------------------ATGTTGCGGGCGG
AGGTTTTAAGGTTCCCTGCTGCTGCTTGTGTGCTGCTGCTGCCTCTT-----CTAACGGTAAAAGTAAAAACCTTATCTC
TGACCGACTGACGTGCTGATTTCTCTT-CCTGCCCACGTGTTGTGTTCAGCCCCCGCAGCCGCGCCCGGATCGGATGGAC
ACCGCCATGCACCCCGCCGGCGCCGACGACGGCGGC------------CTCGCCGACCCGCTCACCGGCAACGCGGGCAC
AGGCACCGAGGTAAAACCCAGACGAAATCTCTGCTACAAAAATCACGTCTCTCTTTTCCCTTTTTCTTTGTCGTTATACT
ACTACTATTTTCGTGCGGGTTACTTTGATGTTCTTTTTC-TACCCTCGAGCAGCATGCGCGTATTTTTTT-TATAATAAA
-AAAGATGA-------AAGAAAAAAATATCACGGCCGTTTCATTCATGCTGCTGCTTTTGTACCGTTGTGAGAGTGAGAT
ATGGTTTGGACTTTTCCGGATGCGGAACCGTGTGGTGCGCTCTAGGCTGCGGTTTTCGGTCGTGGGCTTCAGTTCCGCGG
TGGTGGG-CCCTGCGTCAGCCCGCTCCTTG-------CTTGCTTCTTTATTACAGCTCCTTGCCACTCGGGCCCGAATAT
TCGCTCCCCACAGGCCACGCGAATATGCCTTCAGAGATGCGCTCTCTCTCTCTCTGAGAAGAAAAAACTTCGTA------
------GCTTAACCTGTAAGCAGCAGGTCTAGCAGGTGCTTAGGTCAAGTCAAGTGACG---------------------
---------------------------------GTATTATGCTACGGTTAATCACTTTCTTAAGCCTGAGACAGGCTGTC
TTTGACGCGAGAGCTGTCGCTCCCGTGGCCCCACCTGTCTGTGTCTGCTCGCCATTGAGAGCGACACAGGGGACTTTTCT
GTAATTATTTGCGGT-GGGGGGTCCTCTGACTAGAGATATTTGTGATAGGGTCGCTTTCTCCTCTCCACTGTCCATGTTT
GTCCACAAAGCCAAGGGGCTTCGCTGCAAGTGAGCACCACATGGTTTTGTCATTTCTGTGCTCCCAGCCACAACATGGTC
CAGAGGAGAGTAGCATA------CAAGGTATGGAACTGCGTGGACT--TGCTTGTGGTTATGGAGGTAG---------AT
CTTTGTG-----------------------------------------------------------------ACACTCTG
AAATA-------------------------------------------------------------------GATTCAGA
AGATATATGGGTTGAAGGTAAACTGGCTGAGTTATATGTGTAAATAATGAAACTGAGGTTGTTCAGCCTCTTTATAAGTG
AGGAACTGAGGGGTGAGATCAGGCTACACTAGCCTGAAGCTTCGGCTGATCTGCTCCTTTCCTGCTAAAGTGCTGAGGTC
TAACAAACAGTACACAGCAGCCAATTCTAGGATAGCAAACAGGGTTGTTGTTTATTGGGCTATGCTCTTCTTGCTCACTA
ATATGAGATGCTGAGTTTACCTTCCATTAAGAACAACCAATGATCTGCTACCATGCCCCTTGTTATTGACTAGCTTTTGC
------------------TGCTCCTGTGTTGTGCTTGTGGG---------------------------------------
-----------GTTTTTCAGTTTTGTTTCAAGCTTTGGTCTGGATGTTGGTACTGTGACTTAACTATGTTTGCCTGATCG
TTGTACAGGGCATTATTTGTGGTATGCCAGACTTCAAGATGGGTGGAAAGAGGGGCGATGAATCTGCCCCTACTGATGCT
GGTGATGAAGACGGCGAAGATGATGACGGGGATGAGGATGGTGACTTCGCGGAGGGCGAAGAGGAAATCTCGGAAGGAGA
GGAGTATGACAACCCCAAGGCCAGTGACGCCAAGAAGAAACAAATAGGCGAGGGTGAGGAGAATGGCGAGGATGATGAGG
AAGAACAAGAGGAGCAGGAGGGTGGAGGAGGTGACGACGATGATGATGACGACGACAACGACGATGACAATGAGGACGAC
GACGATGATGACGATGATGTCGCTGCTGAAGACGATGGAGATGGAGTAGAAGAGGAGGATGATGAC------------GA
TGATGAGGAGGAGGACGATGAGGACTCGCTCCAGCCCCCGAAGAAGAGGAAGAAGTGA----------------------
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>chr2B_1_TraesCS2B01G556800
GCTCCCACCACTCCATGCGGGTGCGAGGACGCGGGGGGGGACACGTCACGCGCAATCCGCCGATGACGCGCTCCTCCCAG
CCAGCCGGGCCATGTGTATGACTTCCGGGGC------------CCGCTCCGCTCCCAACGGGCGGGCGAGGACGGACGAC
CGGCGCTCTCGGTGGGGATCTGGC-----CTGGCCTCACGCTGGCCGTTTGATCCGACGATGATGATTATCCCTTCCCTT
CCGCCTCTCTCTCG----------AACGGATTTCCTGCCATGCACCGGGTCCTTCTACAAACCAGCGGCACAAAATCTCT
CTTCGCCCCTCGGGTTTGCGGAGAATTTACGCGCCTGCCCTCCGCGCACACATCACTGCCCACCTGCCC----------T
GCTGCCCGCTCCTCTATCCTCTC----TCTCTCTCCAGCATCCTCTTTCTCTCCTTCCTCCCATGGAGTCGGCATAGCCA
CTAGCCGGTTCTGCCCGTTGAGAGCGCTCATATACCCTCCAC-----ACCTCCAGATCTGTGGCCTGTTGTAGTCTCT--
GCCTCCTCAGAACAACAAGGTAACTAACCTCTCTT-----------CTTTATTAACGCATCTCAACTGCTTTTTACTCCT
GCTAGTGTGAAGA----------ATAATCATACGTCTCTTGTTCCTCCTGTTAATTAACCCTAGCTGTTAAAACAGATTT
TTTTGGCACCTGTTCTAGGCTCTGCTCTG-----ACAGACCACGGCAAATTGTGCTATGAGTTTGTTTGTGTGCACCTGC
AGAGCCTGAAACCTTCAGGCTCCAGCACAGATTTTCTCACTCGCTGAGAGGAACACT-----------------------
-------CTCGTTTT-CTCTCTTATCTTTTTGCCTGGCACTTCTGTGAGCTAGTAGCTAGGAGTGGTAAGCATCTGTTCA
GAAGAAAAGATGTGTTTTCGCCTCTGTTCTCTGGCCTGCCAGTAGCGGAGGAGGATAGGGTGGG-TTTTTGCTAGAATTA
GGTGCAACAAAATCTCTGCGAAGAATCG-TTTTTTTCTGCCGGCCCAAACCTTGTTGGGAAAGTAAAATGTTGCGGGCGG
AGGTTTTAAGGTTCCCTGCTGCTGCTTGTGTGCTGCTGCTGCCTCTT-----CTAACGGTAAAAGTAAAAACCTTATCTC
TGACCGACTGACGTGCTGATTTCTCTT-CCTGCCCACGTGTTGTGTTCAGCCCCCGCAGCCGCGCCCGGATCGGATGGAC
ACCGCCATGCACCCCGCCGGCGCCGACGACGGCGGC------------CTCGCCGACCCGCTCACCGGCAACGCGGGCAC
AGGCACCGAGGTAAAACCCAGACGAAATCTCTGCTACAAAAATCACGTCTCTCTTTTCCCTTTTTCTTTGTCGTTATACT
ACTACTATTTTCGTGCGGGTTACTTTGATGTTCTTTTTC-TACCCTCGAGCAGCATGCGCGTATTTTTTT-TATAATAAA
-AAAGATGA-------AAGAAAAAAATATCACGGCCGTTTCATTCATGCTGCTGCTTTTGTACCGTTGTGAGAGTGAGAT
ATGGTTTGGACTTTTCCGGATGCGGAACCGTGTGGTGCGCTCTAGGCTGCGGTTTTCGGTCGTGGGCTTCAGTTCCGCGG
TGGTGGG-CCCTGCGTCAGCCCGCTCCTTG-------CTTGCTTCTTTATTACAGCTCCTTGCCACTCGGGCCCGAATAT
TCGCTCCCCACAGGCCACGCGAATATGCCTTCAGAGATGCGCTCTCTCTCTCTCTGAGAAGAAAAAACTTCGTA------
------GCTTAACCTGTAAGCAGCAGGTCTAGCAGGTGCTTAGGTCAAGTCAAGTGACG---------------------
---------------------------------GTATTATGCTACGGTTAATCACTTTCTTAAGCCTGAGACAGGCTGTC
TTTGACGCGAGAGCTGTCGCTCCCGTGGCCCCACCTGTCTGTGTCTGCTCGCCATTGAGAGCGACACAGGGGACTTTTCT
GTAATTATTTGCGGT-GGGGGGTCCTCTGACTAGAGATATTTGTGATAGGGTCGCTTTCTCCTCTCCACTGTCCATGTTT
GTCCACAAAGCCAAGGGGCTTCGCTGCAAGTGAGCACCACATGGTTTTGTCATTTCTGTGCTCCCAGCCACAACATGGTC
CAGAGGAGAGTAGCATA------CAAGGTATGGAACTGCGTGGACT--TGCTTGTGGTTATGGAGGTAG---------AT
CTTTGTG-----------------------------------------------------------------ACACTCTG
AAATA-------------------------------------------------------------------GATTCAGA
AGATATATGGGTTGAAGGTAAACTGGCTGAGTTATATGTGTAAATAATGAAACTGAGGTTGTTCAGCCTCTTTATAAGTG
AGGAACTGAGGGGTGAGATCAGGCTACACTAGCCTGAAGCTTCGGCTGATCTGCTCCTTTCCTGCTAAAGTGCTGAGGTC
TAACAAACAGTACACAGCAGCCAATTCTAGGATAGCAAACAGGGTTGTTGTTTATTGGGCTATGCTCTTCTTGCTCACTA
ATATGAGATGCTGAGTTTACCTTCCATTAAGAACAACCAATGATCTGCTACCATGCCCCTTGTTATTGACTAGCTTTTGC
------------------TGCTCCTGTGTTGTGCTTGTGGG---------------------------------------
-----------GTTTTTCAGTTTTGTTTCAAGCTTTGGTCTGGATGTTGGTACTGTGACTTAACTATGTTTGCCTGATCG
TTGTACAGGGCATTATTTGTGGTATGCCAGACTTCAAGATGGGTGGAAAGAGGGGCGATGAATCTGCCCCTACTGATGCT
GGTGATGAAGACGGCGAAGATGATGACGGGGATGAGGATGGTGACTTCGCGGAGGGCGAAGAGGAAATCTCGGAAGGAGA
GGAGTATGACAACCCCAAGGCCAGTGACGCCAAGAAGAAACAAATAGGCGAGGGTGAGGAGAATGGCGAGGATGATGAGG
AAGAACAAGAGGAGCAGGAGGGTGGAGGAGGTGACGACGATGATGATGACGACGACAACGACGATGACAATGAGGACGAC
GACGATGATGACGATGATGTCGCTGCTGAAGACGATGGAGATGGAGTAGAAGAGGAGGATGATGAC------------GA
TGATGAGGAGGAGGACGATGAGGACTCGCTCCAGCCCCCGAAGAAGAGGAAGAAGTGAAGCCCTTCGACGCGGCTGCTTT
AGTCACCATGCGACGAGATGTGCCTGTCCTTCACTGTGTTCTGGAAACTTTCCTTAGAGTTAAAAATGCCCCCACACGAT
CACAATGTGTGGGCTTGTAGGAGCGATTAGAGGGAACTTTGTTGTCACCGTTGCTTTGCTTCTGTGGAGTTGATCGAACA
GATGTTTCGCTAACATAATTGTACCTGAGTGGCGAAAGCCTCAAGATTTGAATATGTCAGTCAACTCTTTTTATCTCCTT
CCGGCATCGTGTTCCGTGCAATCTTGTTCAGAACACATTGTGTTGGTAGCTCCTTAAATAAGGCCAAATCACATTGTTGA
TAGCTCCTGGATTTATCGTGGGTGCTGTCTGGTTTCTGCATAATTCTGCTGATGATGACGACTAGATAATTACGGCAATG
TCTAGATATATGGCTTGTTAGTGTAGT-----------------------------------------------------
----------------------------------------------ATTTTCTAGATAATTAAACAGA--ACATCTTTGT
ACAAAAGAAAATAAAGAGAACATCTCCCTTGGTCTTTGCACACTGTCCAAGCGGCATGGCTCAGATGTCACACCCATAAG
CGTGCTCTAGGAAGGTGC--------CAC-TGATGCCACCCTTCAGGCCTTGTTCGGTTACACCCCTCCACAAGAGGATT
GAAGGGGATTTGGGGAGGTTTTGACTTGTAGAGGATTAAATCCACTTCAATCCCTGCCAAATCCCTCTCAACCGAACACA
GCCTCAGAGAAGTAAGCTCATATCAAAAAG-AAATCGCTACGTCCCTGTT---AGGTTTGTTTTTCCCTTTCGCGGTTGC
GATTGCTAAGGCAATCATCCTCTCCAAGTTTCGTCAAGGAACCCATGGAGCGGCCGATGGCAGGAAAAGGATCC----CC
C-------------GCTAATAGTTTAGGTTAGGTGACGGGTGGCGGGAGAGGATCCCGGTGCTCTGGCTCCGGCTAGTAG
TTTAGGTTAGGTTTTTTCTC---GTAGGGGCGCTATTTGGGTGGATGGCGATGTTTCATCTTTGAGCGTAGT
>chr2D_1
GCTCCCACTACTCAATGCGG-TGCAAGGACGCGGA-GGGGACACGTCACGCGCAATCCGCCGATGACGCGCTCCCGTC--
----CCGGGCGATGTGTATGACCTCCGGGGCCCGCAGGTGCGGCCGCTCCGCTCCCAACGGGCGGGCGAC----GACGAC
CGGCGCTCTCGGTGGGGATCTGGCGCGGCCTGGCTTCACGCTGGCCGTTTGATCCGACGATGATGA---TCCCTTTCCTT
CCGCCTCTCTCTCG----------AACGGATTTCCTGCCATGCACCGGGTCCTTCTACAAACCAGCGGCACAAAATCTCG
GTCGGGTCCTCGGGTTAGCGGAGAATTCACGCGTCTGCCCTCCGCGCACACATCACTGCCCACCTGCCCCTTCTGCCCGT
GCTGCCCGCTCCTCTATCCTCTCTCTCTCTCTCTCCAGCATCCTCTTTCTCTCCTTCCTCCCATGGAGTCGGCCT-----
------AGTTCTGCCCGTTGAGAGCGCTCATATATCCTCGA-----GACCTCCAGATCTGTGGTCTGTTGCAGTCTCT--
GCCTCCTCACAACAACAAGGTAACTAACCTCTCCTGTTTATCTCGCGTTTATTAACGCATCTCAACTACTTTTCACGACT
GCTACTAGTAGTATGCATATTGCATAATCATATCTCTTTTGTTCCTCCTGTCAATTAACCCTAGCTGCCGAGAGGTTGGA
T-TTCGCACCTGTTCTAGGCTCTGCTCTG-----GCAGGCCATGGCAAATTGTGCTATGAGCTCGTTTGTGTGCACCTGC
AGAGTCTGAAACCGTCAGGCTTCAGCACAGATTTTCTCACTCGCTGAGAGAAATATACTCCTGCTCTTCTTCCTCGTTTT
CTGTATACTCGTTTT-CTCTCTTATC--TTTGCCTGGCACTTCTGTGAGCTAGCTAGTGGCAGTAGTAC-CATCTGTTCA
GAAGAAAATATGTGTTTTCGCCTCTGTTCTCTGACCTGCTAGCAGC---GGAGGATAGGGTGGATTTTTTGCTAGAATTA
GGTGCAACAACTTCTCTGGGGAGAACCGCTTTTTTTCTGCCGGCCCAAACCTTGTTGGGAAAGTAAAATGTTGCGGGCGG
AGGTTTTAAGGTTTCCTGCTGCT---TGTGTGCTCCTGCCTCTGGCTACTAACTAACGGTAAAAGTAAAG-CCCCGTCTC
TGT--GACTGACGTGTTGATTTCTCCTGCCTGCCCAC-----GTGTTCAGCCCCTGCA---------------GATGGAC
ACCGCCATGCACCCCGCCGCCG------------GCGACGACGACGTCCTCGCCGACCTGCTCACCGTCGGCACCGGCAC
CGACACCGAGGTAAAGCCCAAACGAAATCCGTGCGGCAAAAATCACATCTCTCTGTCGTTT------------------T
ACTACTATTTTCGTGTGGGTTACTTTGATGTTCTTTTTTTCATCCTCGAGTAGCATGCGTGTATTTTTTTATATACGAAA
-AAAGATGTGTGAAAGAAAAAAATAATATCACGGCCGTTCCATCCA-------GCTTTTGTACCGTTGCGAGAGTGAGAT
ATGGTTTGGACTTTTCCGGATGCGGAACCGTGTGGTGCGCTCTAGGCTGCGGTTTTCGGTTGTGGGCTTCAGTTCCGTGT
GGGTGGG-CCCTGCCTCAGCCCGCTCCTTGCA----GCTTGCTTCTTTATTACAGCTCCTTGCCACCCGGGCCCGAATAT
TCGCTCCCCACAGGCCACGCGAATATGCCTTCAGAGAT--GCTCTCTCTCTCTCCCTGAAGAAAAAACTTCGTA------
------GCTTAACATGT------------------------------AGTCAAGTGACGGTATACGT-------------
-------------------------------GCGTATTATGCTACGGTTAATCACTTTCTTAAGCGTGAGCCAGGCTGTC
TTTGACGCGAGAGCTGTCGCGCCCACGGCCCCACCTGTCTGTGCCTGCTCGCCATTGAGAGTGACACAGGGGACTTTTCT
GTAATTATTTGCGGT-GGGGG-TCCTCTGACTAGAGATATTTGTGATAGGGTCGCTTTCTCCTCT-CACTGTCCATGTTT
GTCCACAAAGCCAAGGGGCTTCGCTGCAAGTGAGCACCACATGGTTTTGTCATTTCTGTGCTCCCAACCACAACATGGTC
CAGAG-----TAGCATA------CAAGGTATGGAACTGCATGGACA--TGCTTGTGGTTATGGAGGTAG---------AT
CTTTGTGTCCTAAATATAAGTCTTTTTAGATATTCCACTATGGGCTACATACGGAGTAAAATGAGTGAATCTACACTCTA
AAATATGTCTATATACATCCATATGTAATTTGTAGTGGAATCTCTAAAAAGACTTATATTTAGGAACGGAGGGATTCAGA
AGATATATGGGTTGAAGGTAAACTGGCTGAGCTG--TGTATAAGTGATAAAACTGAGGTTGTTCAGCCTCTTTATAAGTG
AGGAACTGAGGGGTGAGATCAGGCTACACTAGCCTGAAGCTTCAGCTGGTCTGCTCCTTTCCTGCTAAAGTGATAAGCGC
TGACAAACAGTGCACAGCAGCCGATTCTAGGATAGCAAGCAGGGTTGTTGTTTATTGAGCTCTGCTCTTTTTGCTCACTA
ATATGACTTGCTGAGTTTACCA-TAAGAAAAACG----CATGATCTGCTTCCATGCCGCTTGTTACTGACTAGCTTTTGG
TCACTTTTATTAATCCTTTGTTCTTGTGTTGTGTTTGTGGGTTTTTCAGGTTTTGT------------------------
-------------------------TTTCAAGCTTTGGTCTGGATGTTGGTATTGTGACTTAACTATGTTTGCCTGATTG
TTGTACAGGGCATTATTTGTGGTATGCCAGACTTCAAGATGGGTGGAAAGAGGGGCGATGAATCTGCCCCTACTGATGCT
GGTGATGAAGATGGCGAAGATGATGACGGGGACGAGGATGGCGACTTCGCGGAGGGCGAAGAGGAAATCTCGGAAGGAGA
GGAGTATGACAACCCCAAGGCCAGTGACGCCAAGAAGAAACAAATAGGCGAGGGTGAGGAGAATGGCGAGGATGATGAGG
AAGAACAAGAGGAGCAGGAAGGTGGAGGAGGTGACGACGATG---ATGACGACGACGACGACGATGACAATGAGGACGAT
GACGATGATGACGATGAAGTCGCTGCTGAAGACGATGAGGATGGAGTAGAAGAGGAGGATGACGACCAGGACAACGACAA
TGACGAGGAGGACGACGACGAGGACTCGCTCCAGCCCCCGAAGAAGAGGAAGAAGTGAAGCCCTTCGACGCGGCTGCTTT
AGTCACCATGCGATGAGATGTGCCTGTTCTTCACTGTGTTCTGGAAACTTTCCTTAGAGTTAAAAATG-CCCCACACGAT
CACAATGTGTGGGCTTGTAGGAGCGATTAGAGGGAACTTTGTTGTCATCGTTGTTTTGCTTCTGTGGAGTTGATCGAACA
GATGTTTCGCTAACATAATTGTACCCGAGTGGCGAAAGCCTCAAGATTTGAATATGTCAGTCAACTCTTTTTATCTCCTT
CCGGCATCGTTCT--GTGCAATCTTGTTCAGAACACATTGTGTTGGTAGCTCCTTAAATAAGGCCAAATCACATTGTTGA
TAGCTCCTGGATTTATCGTGGGTGCTGTCTGGTTTCTGCATAATTCTGCTGATGATGGT-----GATGATTATGGTAATG
TCTAGATATATGGCTTGTTAGTGTAGTTCTCCCTCAT-------------------------------------------
----------------------------------GACGGATGGAGTATTTTCTAGATAATTAAACAGA--ACATCTCTGT
CCAAAAGAAAATAAAGAGAACATCTCCCTTGGTCTTTGCACACTGTCCAAGCAGCATGGCTCAGATGTCACACCCATAGG
CGTGATCTAGGAAGGTGCCACAGTGTCAC-TGATGCCACCCTTCAGAGAAGT----------------------------
--------------------------------------------------------------------------------
--------------AGCTCATATCAAAAAGGAAATCGTTACCTCCCTGTTAGGAGGTTTCTTTTTCCCTTTCGCGGTTGC
GATTGGTAGGACAATCATCCTCTCCAAGCTTCGTCAAGGAACCCATGGAGCGGCCAATGGCATGAAAAGGATCCCAGTCA
GTGCCTCGGCTCCGGCTAATAGTTTAGGTTAGATGACCGGTGGCAGGAGAGGATCCCGGTGCTCCGGCTCCGGCTAGTAG
TTTAGGTTAGGTTTTTTTTTTTGGTAGGGGCGCTATGTGGGTGGATGGCGGCGTTTCATCTTTGAGCTAGT-
>chr2A_13
CC------------ATGCGG-TGCAAGGACGCGGA-GGGGACACGTCACGCGCAATCCGCCGACGACGCGCTCCCGAC--
----CCGG-CGATGTGTATGACTTCCGGGGCCCGCAGGTGCGGCCGCTCCGCTCCCAACGGGCGGGCGAA----GACGAC
CGGCGCTCTCGGTGGGGAT---------------------CTGGCCGTTTGATCCGACGATGATTA---TCCC-TTCCTT
CCGCCTCTCTCTCTCTCTCTCTCAAACGGATTTCCTGCCATGCACCGGGTCCTTGTACAATCCAGCGGAACAAAATCTCT
CTTCGGTCCTCGGGTTAGTGGAGAATTCACGTCTTTGCCCTCCGCGCACACATCACTGCCCACCTGCCCCTTCTGCCCGC
GCTGCCCGCTCCTCTATCCCT------TCTCTCTCCAGCATCCTCTTTCTCTCCTCCCTCCCATGGCCATGGAGTCGGC-
CTAGCCAGTTGTGCCCGTTGAGAGCGCTCATATACCCTCAGAGACGGACCTCCAGATCTGTGGTCTGTTGTAGTCTCTCT
GCTTCCTCAAAACAAGG-------TAACCTCTCATGTTTACATCGCCTTTATTAACGCATCTCAACTGCTTTTTACACCT
GCTTGTGGTAGTATGC-------ATAATCATATCTTTGTTGTTCATCCTGGTAATTTACCCTAGCCGCTCA-AGGTTTGA
G-TTGGCACCTGTTCTAGGCTCTGCTCTGCTCTGACAGACCACGGCAAATTGTGCTATGAATTCGTTTGCGTGCACCTGC
AGAGTCTGAAACCTTCAGGATTCAGCACAGATTTTCTCACTCGCTGAGAGAAATAAATACTAGTGCT-----CTCGTTTT
CTGTATACTCGTTTTTCTCTCTTATC--TTTCCCTGGCACTTCTGTGAGCTTTCTGTTCAG-------------------
--AGAAAAGTTGTGTTTTCACGTCTCTTCTCTGACCTACCAGTAGC---GGAGGATAGGGTGGA-GTTTTGCTAGAATTA
GGCGCAACAAAATCTCTGGGAAGAATCGC-TTTTTTCTGCCGGCCCAAACCTTGTTGGGAAAGTAGAATGTTGCGGGCGG
AGGTTTTAAGGTTTCCTGCTGCTGCCTCTGCCT---------------CTAACTAACGGTAAAAGTAAAG-CCTTATCTC
TGACTGACGT--GTGTTGATTTCTCCTGCCTGCCCAC-----GTGTTCAGCCCCTGCAGCCGCGCCCGGATCGGATGGAC
ACCGCCATGCACCCCGCCGGCG------------GC------------CTCGCCGACCTGCTTACCGACAACGCCGGCAC
CGGCACCGGCACCGAGGTAG--------------TACAAAAATCACATCTCTCTCTGTCGTTTTACTACG----------
--TACTATTTTCGTGTG---TACTTTGAAGTTCTTTTTT-CACCCTCGAGTAGCATGCGTGTATTTTTTTATATATGAAA
GAAAGATGTGCGAAAGAA-AAAAAAATATCACGGCCGTTCCATCCA-------GCTTTTGTACCGTTGTGAGAGTGAGAT
ATGGCTTGGACTTTTCCGGATGCGGAACCGTGTGGTGCGCTCTAGGCTGCAGTTTTCGGTTGTGGCCTTCAGTTCCGTGT
GGGTGGGCCCCTGCCTCAGCCCGCTCCTTGGTCCTTGCTTGCTTCTTTATTACAGCTCCTTGCCACTCGGCCCCGAATAT
TCGCTCCCCACAGGCCACGCGAATATGCCTTCAGAGATG------CTCTCCCTCTCTGAAGAAAAAACTTCGTCAGTGTG
TGGCTTGCTTAACCTGCAAGCAGCAGTGCTAGCAGGTGCTTAGGTCAAGTCAAGAGACGGTATAGCATATTATGCTATGG
TTAATCACTTTCTTAAGCGTGAGACAGTATAGCATATTATGCTATGGTTAATCACTTTCTTAAGCGTGAGACAGGCTGTC
TTTGACGCTAGAGCTGTCGCTCCTGCGGCCCCACCTGCCTGTGCCTGCTCGCCATTGAGAGTGACACAAGGGACTTTTCT
GTAATTATTTGGGGTGGGGGG-TCCTCTGACTAGAGATATTTGTGATAGGGTCACTTTCTCCTCT-CACTGTCCATGTTT
GTCCACAAAGCCAAGGGGCTTCGCTGCAAGTGAGCACCACATGATTTTGTCACTTAAGTGCTCCCAACCACAGCATGGTC
CAGAG-----TAGCATAAAAGTACAAGGTATGCAACTGCGTGGACACATGATTGTTGTTATGGAGGCTGTAATATTCCAT
CTTTGTG-----------------------------------------------------------------GCACTCTG
AAATA-------------------------------------------------------------------GATTCACA
AGACAGATAGGTTGAAGGTAAACTGGCTGAGC--TATGTATAAATAATAAAACTGAGGTTGTTCAGCCTCTTTACA----
------TGAGGGGTGAGATCAGGCTTCACAAGCCTTAAGTTTCAGCTGGTCTGCTCCTTAACTGCTAA------------
----------------GCAGCCGGTTCTAGGATATCAAACGGGGTTGTTGTTTATTGAGCCGTGCTCTTGTTGCTTACTA
ATATGAGATGCTAAGTTTACCATTAAGAAAAAGG----AATGATCTGCTGCCATGCCCCTCGTTATTTACTAGCTTTTGG
CCACTTTAC-TAATCCTTTGTTCTTGTGTTGTGCTTGTGGGTTTTTAAGCTTTGTTTCAAGCTTTGGTCTGGATGCTGTT
TGTGCTTGTGGGTTTTTCAGTTTTGTTTCAAGCTTTGGTCCGGATGCTGGTTTTTTGACTTAACTATGTTTGCCTGATCC
TTGTACAGGGCATTATTTGTGGCATGCCAGACTTCAAGATGGGTGGAAAGAGGGGCGATGAATCTGCCCCTACTGATGCT
GGTGATGAAGATGGCGAAGATGATGACGGGGATGAGGATGGTGACTTCGCGGAGGGCGAAGAGGAAATCTCGGAAGGAGA
GGAGTATGACAACCCCAAGGCCAGTGACGCCAAGAAGAAACAAATAGGCGAGGGTGAGGAGAATGGCGAGGATGATGAGG
AAGAACAAGAGGAGCAGGACGGTGGAGGAGGTGACGACGATG---ATGATGATGACGACGATGATGACAATGAGGACGAC
GACGATGATGACGACGATGTCGCTGCTGAAGACGATGAGGATGGAGTAGAAGAGGAGGATGACGACCAGGACAACGACGA
TGATGAGGAGGACGATGACGAGGACTCGCTCCAGCCCCCGAAGAAGAAGAAGAAGTGAAGCCCTTCGACGCGGCTGCTTT
AGTCACCATGCAATGAGATGTGCCTGTTCTTCACTGTGTTCTGGAAACTTTCCTTAGAGTTAAAAATG-CCCCACACGAT
CACAATGTGTGGGCTTGTAGGAGCGATTAGAGGGAACTTTGTTGTCACCGTTGCTTTGCTTCTGTGGAGTTGATCGAACA
GATGTTTCGCTAACATAATTGTACCTGAGTGGCGAAAGCCTCAAGATTTGAATATGTCAGTCAACTCTTTTTATCTCCTT
CCGGCATCGTTCT--GTGCAATCTTGTTCAGAACACATTGTGTTGGTAGCTCCTTAAATAAGGCCAAATCACATTGTTGA
TAGCTCCTGGATTTATCGTGGGTGCTGTCTGGTTTCTGCATAATTCTGCTGATGATGGTGACTAGATGATTACGCTAATG
TCTAGATATATGGCTTGTTAGTGTAGTACCCCCTCTGTTTTAAAATAATTGTCTCAACTTTGTACTAACTTATTTTAATA
TAAAATTGTACTAAAGTTCTGACACTTATTTTAAGACGGAAGGGGTATTTTCTATATAATTAAACAGAACACATCTCTGT
CCAAAAGAAAATAAA-AGAACATCTCCCTTGGTCTTTGCACACTGTCCAAGCGGCATGGCTCAGATGTCACACCCATAGG
CGTGATCTAGGAAGGTGCCAAAGTGCCACTTGATGCCACCCTTCAGAGAAGT----------------------------
--------------------------------------------------------------------------------
--------------AAG---------------AAGCGTTACATCCCTGATAGGAGGTTTCTTTTTCCCTTTGGCGGTTGC
GATTGATAAGGCAATCATCCTCTCCAAGCTTCATCAAGGAACCCATGGAGCGGCCAATGGCAGGAAAAGGATCC----CA
GTGCCTCGGCTCTGACTAATAGTTTAGGTTAGGTGACCGGTGGCGGGAGAGGATCCCAGTGCTCCGTCTCCGGCTAGTAG
TTTAGGTTAGGTTTTTTCTC---GTAGGGGCGCTATTTGGGTGGATGGTGGCGTTTCATCTTTGAGCTAGT-
>SNPs
--------S----S------S---S---------SS--------------------------------------SSS-SS
SSSS------S----------------------------------------------------------SSSSS------
----------------------------------S-------------------------------SSS------S----
--------------------------------------------------------------------------------
-----SS---------S----------S-----S----------------------------------------------
-------------------------------------------------------------------------S-S-S-S
------S--------------------------------S-S---------------------S----------------
---------S-----------------------S------------------------------------------S---
-------SS-SS--------------------SS---S-----------------------------S-S-S-SSSS-SS
-S-------------------------------------------------------------S----------------
----S----------------S----------------------------S--S-SS-----------------------
--------------------------SS-------------------------SS-S-S-----S---SS----------
---------------------------------S------------SSS--------------S----------------
------------------S-------------------------------------------------------------
-------------S-----------S--------S----SS-SSSS-----------------------SS---------
----S----------S---------S-----------SSSSS------------S-------------------------
----------------------SSSSSSSSSSSS------------------------S--------S------S-----
S--------------S----S--------SS---------------S-------S-SS-S----S--SS-SSSSSSSSS-
---------------S----------------------S-S---------S--------S---------------SS---
--------S---------S--------------------S---S--SSSSSSS---------------------------
------------------------------------------------------------S----------------S-S
S-------------S-----------------------------------------------------------------
---------------------------------------S---------------SS-----------------------
--------------------------SS----------------------------------------------------
-----------------------------------------------------------------S--------------
-------------------------S-----------------S-----------------S------------------
---------------------S-------------------------------------------S--------------
------------------------------------------------------------------S-------------
-----SSSSS-----------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S-S-----S--------S-------------------------------
-------------------------------------------S----S-----------------------S-S--SS-
-S---------S----------S----------------------------------S---S-------S----------
---------------------S-SS-SS--S-SSSSSS-----------S-----------------------------S
--------------------S--S--------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S----------------------SSS-----------S-----------------------
-------------------------------------SS-----------------------S-----------------
------------S-----S-------------------------------------------------------------
-------------S-------------S----------------------------------------S-----------
--------------------------------------------------------------------------------
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----------SS-SS-----------------------------------------------------------------
---------------------------------------------------------SS--------S-------S----
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
S-----------------------------------------------------------------------------S-
----S-----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-----------------------S---S-----------------S--------------------
-----S----------------------S--------------------------S-----------------------S
S------------------------------------S--------------------------S---------------
--------------------------------------------------SS---------------SSSSS
>forward_544
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--------------------------------------------CACACCTCCAGATCTGTGGC----------------
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>reverse_2800
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-------------------------------------------------------------------------------C
TGCTCCTGTGTTGTGCTTG-------------------------------------------------------------
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>forward_1573
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---------------------------------GCCGTTTCATTCATGCTGCT---------------------------
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------------------------------------------------------------------------
>reverse_3454
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-------------CGAGATGTGCCTGTCCTTCA-----------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------
