Multiple sequence alignment - TraesCS2B01G539000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G539000 chr2B 100.000 2237 0 0 1 2237 734186410 734184174 0.000000e+00 4132.0
1 TraesCS2B01G539000 chr2B 81.378 537 80 7 1 523 570918600 570919130 9.550000e-114 420.0
2 TraesCS2B01G539000 chr2B 80.762 525 85 10 2 521 540727833 540728346 1.610000e-106 396.0
3 TraesCS2B01G539000 chr2B 86.989 269 14 9 985 1235 734200262 734199997 1.310000e-72 283.0
4 TraesCS2B01G539000 chr2B 97.500 40 1 0 1548 1587 647111018 647110979 3.990000e-08 69.4
5 TraesCS2B01G539000 chr2D 92.709 1495 44 17 775 2237 603632805 603631344 0.000000e+00 2097.0
6 TraesCS2B01G539000 chr2D 86.590 261 14 4 993 1235 603648478 603648221 3.660000e-68 268.0
7 TraesCS2B01G539000 chr2D 90.184 163 9 2 1 156 603639077 603638915 2.910000e-49 206.0
8 TraesCS2B01G539000 chr2D 98.780 82 1 0 640 721 603638832 603638751 1.790000e-31 147.0
9 TraesCS2B01G539000 chr2D 95.652 69 3 0 577 645 603638919 603638851 6.530000e-21 111.0
10 TraesCS2B01G539000 chr2D 95.122 41 2 0 1547 1587 165479120 165479160 5.160000e-07 65.8
11 TraesCS2B01G539000 chr2D 87.500 56 6 1 2119 2174 537447714 537447660 1.850000e-06 63.9
12 TraesCS2B01G539000 chr4D 84.601 539 66 11 6 527 455657241 455657779 9.160000e-144 520.0
13 TraesCS2B01G539000 chr4D 82.486 531 67 14 1 515 440801174 440801694 2.040000e-120 442.0
14 TraesCS2B01G539000 chr4D 81.213 511 67 11 1 503 388702809 388703298 3.480000e-103 385.0
15 TraesCS2B01G539000 chr4D 77.982 545 78 17 1 522 75397569 75397044 1.000000e-78 303.0
16 TraesCS2B01G539000 chr4D 73.363 443 75 22 105 523 51867867 51867444 8.390000e-25 124.0
17 TraesCS2B01G539000 chr7D 84.151 530 72 10 1 523 422197910 422198434 9.220000e-139 503.0
18 TraesCS2B01G539000 chr7D 97.500 40 1 0 1548 1587 69827107 69827146 3.990000e-08 69.4
19 TraesCS2B01G539000 chr7D 92.308 39 3 0 2138 2176 400283803 400283765 3.100000e-04 56.5
20 TraesCS2B01G539000 chr5B 85.714 441 46 8 1 432 457362596 457363028 1.220000e-122 449.0
21 TraesCS2B01G539000 chr5B 81.693 508 65 16 1 487 115649330 115649830 4.480000e-107 398.0
22 TraesCS2B01G539000 chr5B 78.661 478 57 30 1 441 706396339 706395870 2.190000e-70 276.0
23 TraesCS2B01G539000 chr5D 83.202 506 68 7 1 489 563981384 563980879 4.380000e-122 448.0
24 TraesCS2B01G539000 chr5D 95.238 42 2 0 1546 1587 281224538 281224497 1.430000e-07 67.6
25 TraesCS2B01G539000 chr7B 82.000 550 69 15 4 527 198993595 198993050 7.330000e-120 440.0
26 TraesCS2B01G539000 chr7B 85.714 63 9 0 2110 2172 470928769 470928831 1.430000e-07 67.6
27 TraesCS2B01G539000 chr3B 80.550 545 84 13 1 526 39594766 39594225 1.240000e-107 399.0
28 TraesCS2B01G539000 chr3B 92.857 42 3 0 2136 2177 11207231 11207272 6.670000e-06 62.1
29 TraesCS2B01G539000 chr4A 80.295 543 73 14 1 519 69829668 69830200 1.620000e-101 379.0
30 TraesCS2B01G539000 chr2A 81.028 506 61 10 1 487 3763924 3764413 9.760000e-99 370.0
31 TraesCS2B01G539000 chr2A 87.218 266 16 4 985 1235 735787793 735787531 1.010000e-73 287.0
32 TraesCS2B01G539000 chr2A 95.652 46 2 0 1542 1587 722077294 722077249 8.570000e-10 75.0
33 TraesCS2B01G539000 chr2A 93.478 46 2 1 1548 1592 658908581 658908536 1.430000e-07 67.6
34 TraesCS2B01G539000 chr2A 96.970 33 1 0 2075 2107 709581832 709581864 3.100000e-04 56.5
35 TraesCS2B01G539000 chr3D 79.310 116 18 6 2118 2231 562587528 562587417 2.380000e-10 76.8
36 TraesCS2B01G539000 chr3D 87.931 58 6 1 2111 2168 445618195 445618139 1.430000e-07 67.6
37 TraesCS2B01G539000 chr3D 86.538 52 5 2 2116 2167 65403209 65403258 3.100000e-04 56.5
38 TraesCS2B01G539000 chrUn 93.878 49 2 1 1540 1587 30894298 30894346 3.080000e-09 73.1
39 TraesCS2B01G539000 chr4B 86.567 67 8 1 2113 2178 545147699 545147633 3.080000e-09 73.1
40 TraesCS2B01G539000 chr5A 90.476 42 2 2 1540 1579 53231774 53231733 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G539000 chr2B 734184174 734186410 2236 True 4132 4132 100.000 1 2237 1 chr2B.!!$R2 2236
1 TraesCS2B01G539000 chr2B 570918600 570919130 530 False 420 420 81.378 1 523 1 chr2B.!!$F2 522
2 TraesCS2B01G539000 chr2B 540727833 540728346 513 False 396 396 80.762 2 521 1 chr2B.!!$F1 519
3 TraesCS2B01G539000 chr2D 603631344 603632805 1461 True 2097 2097 92.709 775 2237 1 chr2D.!!$R2 1462
4 TraesCS2B01G539000 chr4D 455657241 455657779 538 False 520 520 84.601 6 527 1 chr4D.!!$F3 521
5 TraesCS2B01G539000 chr4D 440801174 440801694 520 False 442 442 82.486 1 515 1 chr4D.!!$F2 514
6 TraesCS2B01G539000 chr4D 75397044 75397569 525 True 303 303 77.982 1 522 1 chr4D.!!$R2 521
7 TraesCS2B01G539000 chr7D 422197910 422198434 524 False 503 503 84.151 1 523 1 chr7D.!!$F2 522
8 TraesCS2B01G539000 chr5B 115649330 115649830 500 False 398 398 81.693 1 487 1 chr5B.!!$F1 486
9 TraesCS2B01G539000 chr5D 563980879 563981384 505 True 448 448 83.202 1 489 1 chr5D.!!$R2 488
10 TraesCS2B01G539000 chr7B 198993050 198993595 545 True 440 440 82.000 4 527 1 chr7B.!!$R1 523
11 TraesCS2B01G539000 chr3B 39594225 39594766 541 True 399 399 80.550 1 526 1 chr3B.!!$R1 525
12 TraesCS2B01G539000 chr4A 69829668 69830200 532 False 379 379 80.295 1 519 1 chr4A.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 774 0.0293 CAAAACCCAGCGTGTGTCTG 59.971 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2090 0.331616 GTGTTGGGATGCCCTTAGGT 59.668 55.0 0.0 0.0 45.7 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
322 373 6.413018 GGTTAACCGGTCAGTTATTGTAAG 57.587 41.667 8.04 0.00 32.45 2.34
368 420 1.274798 CCACGCGTGGTTCATTTTGC 61.275 55.000 42.92 0.00 45.53 3.68
391 448 5.051973 GCTTTTTCTTCGCGTGTAAATTTGT 60.052 36.000 5.77 0.00 0.00 2.83
428 485 0.317160 CGCTCAAGCCGACCCATATA 59.683 55.000 0.00 0.00 37.91 0.86
453 510 3.165498 GGACACGCACATCCGTTC 58.835 61.111 0.00 0.00 39.83 3.95
456 513 2.736995 CACGCACATCCGTTCGGT 60.737 61.111 11.04 0.00 39.83 4.69
489 546 1.266124 CGAAAAACGGACAAAGCGCC 61.266 55.000 2.29 0.00 38.46 6.53
499 556 1.748493 GACAAAGCGCCCATCCATTTA 59.252 47.619 2.29 0.00 0.00 1.40
534 591 2.829741 GTTGCTCTCAACTCAGGTCT 57.170 50.000 1.31 0.00 46.81 3.85
535 592 2.411904 GTTGCTCTCAACTCAGGTCTG 58.588 52.381 1.31 0.00 46.81 3.51
536 593 2.001076 TGCTCTCAACTCAGGTCTGA 57.999 50.000 0.45 0.45 38.06 3.27
537 594 2.319844 TGCTCTCAACTCAGGTCTGAA 58.680 47.619 2.13 0.00 39.39 3.02
538 595 2.036475 TGCTCTCAACTCAGGTCTGAAC 59.964 50.000 2.13 0.00 39.39 3.18
539 596 2.924454 GCTCTCAACTCAGGTCTGAACG 60.924 54.545 2.13 0.00 39.39 3.95
540 597 1.000163 TCTCAACTCAGGTCTGAACGC 60.000 52.381 2.13 0.00 39.39 4.84
541 598 1.000283 CTCAACTCAGGTCTGAACGCT 60.000 52.381 2.13 0.00 39.39 5.07
542 599 1.143305 CAACTCAGGTCTGAACGCTG 58.857 55.000 2.13 0.00 39.39 5.18
543 600 0.601311 AACTCAGGTCTGAACGCTGC 60.601 55.000 2.13 0.00 39.39 5.25
544 601 1.005748 CTCAGGTCTGAACGCTGCA 60.006 57.895 0.00 0.00 39.39 4.41
545 602 0.390866 CTCAGGTCTGAACGCTGCAT 60.391 55.000 0.00 0.00 39.39 3.96
546 603 0.894835 TCAGGTCTGAACGCTGCATA 59.105 50.000 0.00 0.00 36.53 3.14
547 604 1.482182 TCAGGTCTGAACGCTGCATAT 59.518 47.619 0.00 0.00 36.53 1.78
548 605 2.693074 TCAGGTCTGAACGCTGCATATA 59.307 45.455 0.00 0.00 36.53 0.86
549 606 3.321968 TCAGGTCTGAACGCTGCATATAT 59.678 43.478 0.00 0.00 36.53 0.86
550 607 4.522789 TCAGGTCTGAACGCTGCATATATA 59.477 41.667 0.00 0.00 36.53 0.86
551 608 4.861462 CAGGTCTGAACGCTGCATATATAG 59.139 45.833 0.00 0.00 0.00 1.31
552 609 4.767409 AGGTCTGAACGCTGCATATATAGA 59.233 41.667 0.00 0.00 0.00 1.98
553 610 5.243954 AGGTCTGAACGCTGCATATATAGAA 59.756 40.000 0.00 0.00 0.00 2.10
554 611 5.346281 GGTCTGAACGCTGCATATATAGAAC 59.654 44.000 0.00 0.00 0.00 3.01
555 612 5.346281 GTCTGAACGCTGCATATATAGAACC 59.654 44.000 0.00 0.00 0.00 3.62
556 613 5.010617 TCTGAACGCTGCATATATAGAACCA 59.989 40.000 0.00 0.00 0.00 3.67
557 614 4.988540 TGAACGCTGCATATATAGAACCAC 59.011 41.667 0.00 0.00 0.00 4.16
558 615 3.575630 ACGCTGCATATATAGAACCACG 58.424 45.455 0.00 0.00 0.00 4.94
559 616 2.345641 CGCTGCATATATAGAACCACGC 59.654 50.000 0.00 0.00 0.00 5.34
560 617 3.325870 GCTGCATATATAGAACCACGCA 58.674 45.455 0.00 0.00 0.00 5.24
561 618 3.123621 GCTGCATATATAGAACCACGCAC 59.876 47.826 0.00 0.00 0.00 5.34
562 619 4.560128 CTGCATATATAGAACCACGCACT 58.440 43.478 0.00 0.00 0.00 4.40
563 620 4.306600 TGCATATATAGAACCACGCACTG 58.693 43.478 0.00 0.00 0.00 3.66
564 621 4.202212 TGCATATATAGAACCACGCACTGT 60.202 41.667 0.00 0.00 0.00 3.55
565 622 4.386049 GCATATATAGAACCACGCACTGTC 59.614 45.833 0.00 0.00 0.00 3.51
566 623 2.953466 TATAGAACCACGCACTGTCC 57.047 50.000 0.00 0.00 0.00 4.02
567 624 0.973632 ATAGAACCACGCACTGTCCA 59.026 50.000 0.00 0.00 0.00 4.02
568 625 0.753867 TAGAACCACGCACTGTCCAA 59.246 50.000 0.00 0.00 0.00 3.53
569 626 0.814010 AGAACCACGCACTGTCCAAC 60.814 55.000 0.00 0.00 0.00 3.77
570 627 1.782028 GAACCACGCACTGTCCAACC 61.782 60.000 0.00 0.00 0.00 3.77
571 628 3.345808 CCACGCACTGTCCAACCG 61.346 66.667 0.00 0.00 0.00 4.44
572 629 4.012895 CACGCACTGTCCAACCGC 62.013 66.667 0.00 0.00 0.00 5.68
573 630 4.539083 ACGCACTGTCCAACCGCA 62.539 61.111 0.00 0.00 0.00 5.69
574 631 4.012895 CGCACTGTCCAACCGCAC 62.013 66.667 0.00 0.00 0.00 5.34
575 632 2.899838 GCACTGTCCAACCGCACA 60.900 61.111 0.00 0.00 0.00 4.57
576 633 3.022287 CACTGTCCAACCGCACAC 58.978 61.111 0.00 0.00 0.00 3.82
577 634 2.203153 ACTGTCCAACCGCACACC 60.203 61.111 0.00 0.00 0.00 4.16
578 635 3.345808 CTGTCCAACCGCACACCG 61.346 66.667 0.00 0.00 0.00 4.94
589 646 4.602259 CACACCGGGACAGTGCGT 62.602 66.667 6.32 0.00 38.87 5.24
590 647 4.602259 ACACCGGGACAGTGCGTG 62.602 66.667 6.32 0.00 38.87 5.34
593 650 4.619227 CCGGGACAGTGCGTGGTT 62.619 66.667 0.00 0.00 0.00 3.67
594 651 3.345808 CGGGACAGTGCGTGGTTG 61.346 66.667 0.00 0.00 0.00 3.77
595 652 3.660111 GGGACAGTGCGTGGTTGC 61.660 66.667 0.00 0.00 0.00 4.17
596 653 4.012895 GGACAGTGCGTGGTTGCG 62.013 66.667 0.00 0.00 37.81 4.85
597 654 2.964925 GACAGTGCGTGGTTGCGA 60.965 61.111 0.00 0.00 37.81 5.10
598 655 3.223435 GACAGTGCGTGGTTGCGAC 62.223 63.158 0.00 0.00 37.81 5.19
599 656 4.354212 CAGTGCGTGGTTGCGACG 62.354 66.667 0.00 0.00 38.53 5.12
602 659 4.281947 TGCGTGGTTGCGACGGTA 62.282 61.111 0.00 0.00 36.19 4.02
603 660 3.770424 GCGTGGTTGCGACGGTAC 61.770 66.667 0.00 0.00 36.19 3.34
617 674 2.763651 GGTACGCTTTGTAGGGCTG 58.236 57.895 0.00 0.00 37.83 4.85
618 675 0.743345 GGTACGCTTTGTAGGGCTGG 60.743 60.000 0.00 0.00 37.83 4.85
619 676 0.036671 GTACGCTTTGTAGGGCTGGT 60.037 55.000 0.00 0.00 37.83 4.00
620 677 0.036765 TACGCTTTGTAGGGCTGGTG 60.037 55.000 0.00 0.00 37.83 4.17
621 678 1.003839 CGCTTTGTAGGGCTGGTGA 60.004 57.895 0.00 0.00 0.00 4.02
622 679 0.605319 CGCTTTGTAGGGCTGGTGAA 60.605 55.000 0.00 0.00 0.00 3.18
623 680 1.168714 GCTTTGTAGGGCTGGTGAAG 58.831 55.000 0.00 0.00 0.00 3.02
632 689 2.952245 CTGGTGAAGCAGCTGCAC 59.048 61.111 38.24 29.69 45.16 4.57
635 692 3.677527 GTGAAGCAGCTGCACCAT 58.322 55.556 38.24 21.97 45.16 3.55
636 693 1.505353 GTGAAGCAGCTGCACCATC 59.495 57.895 38.24 27.92 45.16 3.51
637 694 1.676635 TGAAGCAGCTGCACCATCC 60.677 57.895 38.24 20.07 45.16 3.51
638 695 1.676635 GAAGCAGCTGCACCATCCA 60.677 57.895 38.24 0.00 45.16 3.41
639 696 1.000019 AAGCAGCTGCACCATCCAT 60.000 52.632 38.24 14.33 45.16 3.41
640 697 0.256752 AAGCAGCTGCACCATCCATA 59.743 50.000 38.24 0.00 45.16 2.74
641 698 0.477204 AGCAGCTGCACCATCCATAT 59.523 50.000 38.24 12.75 45.16 1.78
642 699 1.133575 AGCAGCTGCACCATCCATATT 60.134 47.619 38.24 12.19 45.16 1.28
643 700 1.268899 GCAGCTGCACCATCCATATTC 59.731 52.381 33.36 0.00 41.59 1.75
644 701 1.884579 CAGCTGCACCATCCATATTCC 59.115 52.381 0.00 0.00 0.00 3.01
645 702 1.779092 AGCTGCACCATCCATATTCCT 59.221 47.619 1.02 0.00 0.00 3.36
646 703 2.157738 GCTGCACCATCCATATTCCTC 58.842 52.381 0.00 0.00 0.00 3.71
647 704 2.420642 CTGCACCATCCATATTCCTCG 58.579 52.381 0.00 0.00 0.00 4.63
648 705 1.160137 GCACCATCCATATTCCTCGC 58.840 55.000 0.00 0.00 0.00 5.03
649 706 1.432514 CACCATCCATATTCCTCGCG 58.567 55.000 0.00 0.00 0.00 5.87
650 707 0.320771 ACCATCCATATTCCTCGCGC 60.321 55.000 0.00 0.00 0.00 6.86
651 708 1.021390 CCATCCATATTCCTCGCGCC 61.021 60.000 0.00 0.00 0.00 6.53
652 709 0.036952 CATCCATATTCCTCGCGCCT 60.037 55.000 0.00 0.00 0.00 5.52
653 710 1.204704 CATCCATATTCCTCGCGCCTA 59.795 52.381 0.00 0.00 0.00 3.93
654 711 1.557099 TCCATATTCCTCGCGCCTAT 58.443 50.000 0.00 0.00 0.00 2.57
655 712 1.899814 TCCATATTCCTCGCGCCTATT 59.100 47.619 0.00 0.00 0.00 1.73
656 713 2.301870 TCCATATTCCTCGCGCCTATTT 59.698 45.455 0.00 0.00 0.00 1.40
657 714 2.673368 CCATATTCCTCGCGCCTATTTC 59.327 50.000 0.00 0.00 0.00 2.17
658 715 2.060326 TATTCCTCGCGCCTATTTCG 57.940 50.000 0.00 0.00 0.00 3.46
659 716 0.104304 ATTCCTCGCGCCTATTTCGT 59.896 50.000 0.00 0.00 0.00 3.85
660 717 0.108520 TTCCTCGCGCCTATTTCGTT 60.109 50.000 0.00 0.00 0.00 3.85
661 718 0.108520 TCCTCGCGCCTATTTCGTTT 60.109 50.000 0.00 0.00 0.00 3.60
662 719 0.300789 CCTCGCGCCTATTTCGTTTC 59.699 55.000 0.00 0.00 0.00 2.78
663 720 0.300789 CTCGCGCCTATTTCGTTTCC 59.699 55.000 0.00 0.00 0.00 3.13
664 721 1.085501 TCGCGCCTATTTCGTTTCCC 61.086 55.000 0.00 0.00 0.00 3.97
665 722 1.363145 CGCGCCTATTTCGTTTCCCA 61.363 55.000 0.00 0.00 0.00 4.37
666 723 1.021968 GCGCCTATTTCGTTTCCCAT 58.978 50.000 0.00 0.00 0.00 4.00
667 724 1.404035 GCGCCTATTTCGTTTCCCATT 59.596 47.619 0.00 0.00 0.00 3.16
668 725 2.540973 GCGCCTATTTCGTTTCCCATTC 60.541 50.000 0.00 0.00 0.00 2.67
669 726 2.680841 CGCCTATTTCGTTTCCCATTCA 59.319 45.455 0.00 0.00 0.00 2.57
670 727 3.315191 CGCCTATTTCGTTTCCCATTCAT 59.685 43.478 0.00 0.00 0.00 2.57
671 728 4.554723 CGCCTATTTCGTTTCCCATTCATC 60.555 45.833 0.00 0.00 0.00 2.92
672 729 4.338118 GCCTATTTCGTTTCCCATTCATCA 59.662 41.667 0.00 0.00 0.00 3.07
673 730 5.506317 GCCTATTTCGTTTCCCATTCATCAG 60.506 44.000 0.00 0.00 0.00 2.90
674 731 5.590259 CCTATTTCGTTTCCCATTCATCAGT 59.410 40.000 0.00 0.00 0.00 3.41
675 732 4.764679 TTTCGTTTCCCATTCATCAGTG 57.235 40.909 0.00 0.00 0.00 3.66
676 733 2.710377 TCGTTTCCCATTCATCAGTGG 58.290 47.619 0.00 0.00 35.22 4.00
677 734 2.039746 TCGTTTCCCATTCATCAGTGGT 59.960 45.455 0.00 0.00 33.55 4.16
678 735 2.819608 CGTTTCCCATTCATCAGTGGTT 59.180 45.455 0.00 0.00 33.55 3.67
679 736 4.006989 CGTTTCCCATTCATCAGTGGTTA 58.993 43.478 0.00 0.00 33.55 2.85
680 737 4.640201 CGTTTCCCATTCATCAGTGGTTAT 59.360 41.667 0.00 0.00 33.55 1.89
681 738 5.125417 CGTTTCCCATTCATCAGTGGTTATT 59.875 40.000 0.00 0.00 33.55 1.40
682 739 6.317642 CGTTTCCCATTCATCAGTGGTTATTA 59.682 38.462 0.00 0.00 33.55 0.98
683 740 7.013274 CGTTTCCCATTCATCAGTGGTTATTAT 59.987 37.037 0.00 0.00 33.55 1.28
684 741 8.695456 GTTTCCCATTCATCAGTGGTTATTATT 58.305 33.333 0.00 0.00 33.55 1.40
685 742 8.463930 TTCCCATTCATCAGTGGTTATTATTC 57.536 34.615 0.00 0.00 33.55 1.75
686 743 7.581814 TCCCATTCATCAGTGGTTATTATTCA 58.418 34.615 0.00 0.00 33.55 2.57
687 744 8.226810 TCCCATTCATCAGTGGTTATTATTCAT 58.773 33.333 0.00 0.00 33.55 2.57
688 745 8.517878 CCCATTCATCAGTGGTTATTATTCATC 58.482 37.037 0.00 0.00 33.55 2.92
689 746 9.293404 CCATTCATCAGTGGTTATTATTCATCT 57.707 33.333 0.00 0.00 0.00 2.90
691 748 8.593492 TTCATCAGTGGTTATTATTCATCTCG 57.407 34.615 0.00 0.00 0.00 4.04
692 749 7.726216 TCATCAGTGGTTATTATTCATCTCGT 58.274 34.615 0.00 0.00 0.00 4.18
693 750 7.867909 TCATCAGTGGTTATTATTCATCTCGTC 59.132 37.037 0.00 0.00 0.00 4.20
694 751 7.107639 TCAGTGGTTATTATTCATCTCGTCA 57.892 36.000 0.00 0.00 0.00 4.35
695 752 7.552459 TCAGTGGTTATTATTCATCTCGTCAA 58.448 34.615 0.00 0.00 0.00 3.18
696 753 7.491372 TCAGTGGTTATTATTCATCTCGTCAAC 59.509 37.037 0.00 0.00 0.00 3.18
697 754 7.492669 CAGTGGTTATTATTCATCTCGTCAACT 59.507 37.037 0.00 0.00 0.00 3.16
698 755 7.707035 AGTGGTTATTATTCATCTCGTCAACTC 59.293 37.037 0.00 0.00 0.00 3.01
699 756 7.491372 GTGGTTATTATTCATCTCGTCAACTCA 59.509 37.037 0.00 0.00 0.00 3.41
700 757 8.038351 TGGTTATTATTCATCTCGTCAACTCAA 58.962 33.333 0.00 0.00 0.00 3.02
701 758 8.879759 GGTTATTATTCATCTCGTCAACTCAAA 58.120 33.333 0.00 0.00 0.00 2.69
704 761 5.613358 ATTCATCTCGTCAACTCAAAACC 57.387 39.130 0.00 0.00 0.00 3.27
705 762 3.399330 TCATCTCGTCAACTCAAAACCC 58.601 45.455 0.00 0.00 0.00 4.11
706 763 2.992124 TCTCGTCAACTCAAAACCCA 57.008 45.000 0.00 0.00 0.00 4.51
707 764 2.833794 TCTCGTCAACTCAAAACCCAG 58.166 47.619 0.00 0.00 0.00 4.45
708 765 1.264288 CTCGTCAACTCAAAACCCAGC 59.736 52.381 0.00 0.00 0.00 4.85
709 766 0.041312 CGTCAACTCAAAACCCAGCG 60.041 55.000 0.00 0.00 0.00 5.18
710 767 1.021968 GTCAACTCAAAACCCAGCGT 58.978 50.000 0.00 0.00 0.00 5.07
711 768 1.021202 TCAACTCAAAACCCAGCGTG 58.979 50.000 0.00 0.00 0.00 5.34
712 769 0.738389 CAACTCAAAACCCAGCGTGT 59.262 50.000 0.00 0.00 0.00 4.49
713 770 0.738389 AACTCAAAACCCAGCGTGTG 59.262 50.000 0.00 0.00 0.00 3.82
714 771 0.393808 ACTCAAAACCCAGCGTGTGT 60.394 50.000 0.00 0.00 0.00 3.72
715 772 0.307760 CTCAAAACCCAGCGTGTGTC 59.692 55.000 0.00 0.00 0.00 3.67
716 773 0.107410 TCAAAACCCAGCGTGTGTCT 60.107 50.000 0.00 0.00 0.00 3.41
717 774 0.029300 CAAAACCCAGCGTGTGTCTG 59.971 55.000 0.00 0.00 0.00 3.51
718 775 0.393808 AAAACCCAGCGTGTGTCTGT 60.394 50.000 0.00 0.00 0.00 3.41
719 776 0.393808 AAACCCAGCGTGTGTCTGTT 60.394 50.000 0.00 0.00 0.00 3.16
720 777 0.393808 AACCCAGCGTGTGTCTGTTT 60.394 50.000 0.00 0.00 0.00 2.83
721 778 1.095228 ACCCAGCGTGTGTCTGTTTG 61.095 55.000 0.00 0.00 0.00 2.93
722 779 1.095228 CCCAGCGTGTGTCTGTTTGT 61.095 55.000 0.00 0.00 0.00 2.83
723 780 0.304705 CCAGCGTGTGTCTGTTTGTC 59.695 55.000 0.00 0.00 0.00 3.18
724 781 1.290203 CAGCGTGTGTCTGTTTGTCT 58.710 50.000 0.00 0.00 0.00 3.41
725 782 1.004610 CAGCGTGTGTCTGTTTGTCTG 60.005 52.381 0.00 0.00 0.00 3.51
726 783 1.006832 GCGTGTGTCTGTTTGTCTGT 58.993 50.000 0.00 0.00 0.00 3.41
727 784 1.004927 GCGTGTGTCTGTTTGTCTGTC 60.005 52.381 0.00 0.00 0.00 3.51
728 785 2.540515 CGTGTGTCTGTTTGTCTGTCT 58.459 47.619 0.00 0.00 0.00 3.41
729 786 2.282555 CGTGTGTCTGTTTGTCTGTCTG 59.717 50.000 0.00 0.00 0.00 3.51
730 787 2.609459 GTGTGTCTGTTTGTCTGTCTGG 59.391 50.000 0.00 0.00 0.00 3.86
731 788 1.599542 GTGTCTGTTTGTCTGTCTGGC 59.400 52.381 0.00 0.00 0.00 4.85
732 789 1.230324 GTCTGTTTGTCTGTCTGGCC 58.770 55.000 0.00 0.00 0.00 5.36
733 790 0.249868 TCTGTTTGTCTGTCTGGCCG 60.250 55.000 0.00 0.00 0.00 6.13
734 791 0.532862 CTGTTTGTCTGTCTGGCCGT 60.533 55.000 0.00 0.00 0.00 5.68
735 792 0.531974 TGTTTGTCTGTCTGGCCGTC 60.532 55.000 0.00 0.00 0.00 4.79
736 793 0.249911 GTTTGTCTGTCTGGCCGTCT 60.250 55.000 0.00 0.00 0.00 4.18
737 794 0.249868 TTTGTCTGTCTGGCCGTCTG 60.250 55.000 0.00 0.00 0.00 3.51
738 795 1.399744 TTGTCTGTCTGGCCGTCTGT 61.400 55.000 0.00 0.00 0.00 3.41
739 796 1.080434 GTCTGTCTGGCCGTCTGTC 60.080 63.158 0.00 0.00 0.00 3.51
740 797 1.228583 TCTGTCTGGCCGTCTGTCT 60.229 57.895 0.00 0.00 0.00 3.41
741 798 1.080230 CTGTCTGGCCGTCTGTCTG 60.080 63.158 0.00 0.00 0.00 3.51
742 799 1.810606 CTGTCTGGCCGTCTGTCTGT 61.811 60.000 0.00 0.00 0.00 3.41
743 800 1.080434 GTCTGGCCGTCTGTCTGTC 60.080 63.158 0.00 0.00 0.00 3.51
744 801 1.530655 TCTGGCCGTCTGTCTGTCA 60.531 57.895 0.00 0.00 0.00 3.58
745 802 0.900182 TCTGGCCGTCTGTCTGTCAT 60.900 55.000 0.00 0.00 0.00 3.06
746 803 0.036952 CTGGCCGTCTGTCTGTCATT 60.037 55.000 0.00 0.00 0.00 2.57
747 804 0.037326 TGGCCGTCTGTCTGTCATTC 60.037 55.000 0.00 0.00 0.00 2.67
748 805 0.741221 GGCCGTCTGTCTGTCATTCC 60.741 60.000 0.00 0.00 0.00 3.01
749 806 0.741221 GCCGTCTGTCTGTCATTCCC 60.741 60.000 0.00 0.00 0.00 3.97
750 807 0.898320 CCGTCTGTCTGTCATTCCCT 59.102 55.000 0.00 0.00 0.00 4.20
751 808 1.134965 CCGTCTGTCTGTCATTCCCTC 60.135 57.143 0.00 0.00 0.00 4.30
752 809 1.134965 CGTCTGTCTGTCATTCCCTCC 60.135 57.143 0.00 0.00 0.00 4.30
753 810 1.134965 GTCTGTCTGTCATTCCCTCCG 60.135 57.143 0.00 0.00 0.00 4.63
754 811 1.186200 CTGTCTGTCATTCCCTCCGA 58.814 55.000 0.00 0.00 0.00 4.55
755 812 1.759445 CTGTCTGTCATTCCCTCCGAT 59.241 52.381 0.00 0.00 0.00 4.18
756 813 1.757118 TGTCTGTCATTCCCTCCGATC 59.243 52.381 0.00 0.00 0.00 3.69
757 814 1.757118 GTCTGTCATTCCCTCCGATCA 59.243 52.381 0.00 0.00 0.00 2.92
758 815 2.168521 GTCTGTCATTCCCTCCGATCAA 59.831 50.000 0.00 0.00 0.00 2.57
759 816 2.432146 TCTGTCATTCCCTCCGATCAAG 59.568 50.000 0.00 0.00 0.00 3.02
760 817 2.432146 CTGTCATTCCCTCCGATCAAGA 59.568 50.000 0.00 0.00 0.00 3.02
761 818 2.432146 TGTCATTCCCTCCGATCAAGAG 59.568 50.000 3.26 3.26 0.00 2.85
762 819 1.414181 TCATTCCCTCCGATCAAGAGC 59.586 52.381 4.54 0.00 0.00 4.09
763 820 1.415659 CATTCCCTCCGATCAAGAGCT 59.584 52.381 4.54 0.00 0.00 4.09
764 821 2.454336 TTCCCTCCGATCAAGAGCTA 57.546 50.000 4.54 0.00 0.00 3.32
765 822 1.988293 TCCCTCCGATCAAGAGCTAG 58.012 55.000 4.54 0.00 0.00 3.42
766 823 1.495148 TCCCTCCGATCAAGAGCTAGA 59.505 52.381 0.00 0.00 0.00 2.43
767 824 1.885887 CCCTCCGATCAAGAGCTAGAG 59.114 57.143 0.00 0.00 0.00 2.43
768 825 1.269448 CCTCCGATCAAGAGCTAGAGC 59.731 57.143 0.00 0.00 42.49 4.09
769 826 1.269448 CTCCGATCAAGAGCTAGAGCC 59.731 57.143 0.00 0.00 43.38 4.70
770 827 1.035923 CCGATCAAGAGCTAGAGCCA 58.964 55.000 0.00 0.00 43.38 4.75
771 828 1.000385 CCGATCAAGAGCTAGAGCCAG 60.000 57.143 0.00 0.00 43.38 4.85
772 829 1.680735 CGATCAAGAGCTAGAGCCAGT 59.319 52.381 0.00 0.00 43.38 4.00
773 830 2.287547 CGATCAAGAGCTAGAGCCAGTC 60.288 54.545 0.00 0.00 43.38 3.51
794 851 2.674357 CGTTCTATTTAACCACCACGGG 59.326 50.000 0.00 0.00 40.22 5.28
880 937 3.553511 CAGGTATCTAGCTTGCTCGTTTG 59.446 47.826 0.00 0.00 30.45 2.93
881 938 3.195825 AGGTATCTAGCTTGCTCGTTTGT 59.804 43.478 0.00 0.00 0.00 2.83
882 939 3.307242 GGTATCTAGCTTGCTCGTTTGTG 59.693 47.826 0.00 0.00 0.00 3.33
900 957 2.006888 GTGTGGTATCCATGTCCAACG 58.993 52.381 0.00 0.00 35.28 4.10
903 960 1.903183 TGGTATCCATGTCCAACGTGA 59.097 47.619 0.00 0.00 37.29 4.35
1253 1313 1.755959 CTGATCACCAGAGCTAGCTGT 59.244 52.381 24.99 16.90 45.78 4.40
1254 1314 2.168106 CTGATCACCAGAGCTAGCTGTT 59.832 50.000 24.99 7.30 45.78 3.16
1257 1317 0.244994 CACCAGAGCTAGCTGTTCGT 59.755 55.000 24.99 13.64 34.06 3.85
1258 1318 0.528470 ACCAGAGCTAGCTGTTCGTC 59.472 55.000 24.99 6.63 34.06 4.20
1259 1319 0.814457 CCAGAGCTAGCTGTTCGTCT 59.186 55.000 24.99 9.21 34.06 4.18
1260 1320 1.203523 CCAGAGCTAGCTGTTCGTCTT 59.796 52.381 24.99 0.00 34.06 3.01
1261 1321 2.525055 CAGAGCTAGCTGTTCGTCTTC 58.475 52.381 24.99 4.14 0.00 2.87
1262 1322 2.163412 CAGAGCTAGCTGTTCGTCTTCT 59.837 50.000 24.99 6.75 0.00 2.85
1263 1323 2.823154 AGAGCTAGCTGTTCGTCTTCTT 59.177 45.455 24.99 0.00 0.00 2.52
1264 1324 3.119637 AGAGCTAGCTGTTCGTCTTCTTC 60.120 47.826 24.99 2.51 0.00 2.87
1265 1325 2.823154 AGCTAGCTGTTCGTCTTCTTCT 59.177 45.455 18.57 0.00 0.00 2.85
1274 1334 5.290386 TGTTCGTCTTCTTCTTCTTCTTCC 58.710 41.667 0.00 0.00 0.00 3.46
1308 1368 0.835941 AAGAGCTGTCCTGCCCTATG 59.164 55.000 0.00 0.00 0.00 2.23
1309 1369 0.326048 AGAGCTGTCCTGCCCTATGT 60.326 55.000 0.00 0.00 0.00 2.29
1310 1370 0.105778 GAGCTGTCCTGCCCTATGTC 59.894 60.000 0.00 0.00 0.00 3.06
1311 1371 1.147153 GCTGTCCTGCCCTATGTCC 59.853 63.158 0.00 0.00 0.00 4.02
1312 1372 1.341156 GCTGTCCTGCCCTATGTCCT 61.341 60.000 0.00 0.00 0.00 3.85
1313 1373 2.034799 GCTGTCCTGCCCTATGTCCTA 61.035 57.143 0.00 0.00 0.00 2.94
1314 1374 2.398588 CTGTCCTGCCCTATGTCCTAA 58.601 52.381 0.00 0.00 0.00 2.69
1324 1384 3.902467 CCCTATGTCCTAAGTCCTAACCC 59.098 52.174 0.00 0.00 0.00 4.11
1342 1402 2.000447 CCCGTGAAGTTTAGTGCTAGC 59.000 52.381 8.10 8.10 0.00 3.42
1343 1403 2.353803 CCCGTGAAGTTTAGTGCTAGCT 60.354 50.000 17.23 0.00 0.00 3.32
1344 1404 3.119245 CCCGTGAAGTTTAGTGCTAGCTA 60.119 47.826 17.23 0.00 0.00 3.32
1345 1405 4.106197 CCGTGAAGTTTAGTGCTAGCTAG 58.894 47.826 16.84 16.84 0.00 3.42
1390 1450 6.463995 AGTGGATGTAAAGAAAGCAAACAA 57.536 33.333 0.00 0.00 0.00 2.83
1467 1551 6.645306 TCTATCTATCTCTATCTCACCCGTG 58.355 44.000 0.00 0.00 0.00 4.94
1491 1575 4.006319 ACTTGCTCTTCCATTTAGCTGTC 58.994 43.478 0.00 0.00 37.16 3.51
1506 1590 3.620488 AGCTGTCAAAGAACTTCAACCA 58.380 40.909 0.00 0.00 0.00 3.67
1549 1633 6.297410 CGTACGTTTGTTCGGTTAAATTGTAC 59.703 38.462 7.22 0.00 35.53 2.90
1659 1744 5.237127 CGGACGTACAAGTACCAGATGTATA 59.763 44.000 0.00 0.00 32.65 1.47
1686 1771 0.233848 GTTGTGTTTAGTCGTGCGGG 59.766 55.000 0.00 0.00 0.00 6.13
1689 1774 0.997196 GTGTTTAGTCGTGCGGGATC 59.003 55.000 0.00 0.00 0.00 3.36
1716 1801 3.737850 ACGTACGGTTTCATTGGGTAAA 58.262 40.909 21.06 0.00 0.00 2.01
1726 1811 6.213677 GTTTCATTGGGTAAACTGTTCCTTC 58.786 40.000 0.00 0.00 33.71 3.46
1731 1816 3.052793 TGGGTAAACTGTTCCTTCCCAAA 60.053 43.478 16.66 2.42 40.14 3.28
1734 1819 4.277672 GGTAAACTGTTCCTTCCCAAAGAC 59.722 45.833 0.00 0.00 34.14 3.01
1738 1823 4.349365 ACTGTTCCTTCCCAAAGACAAAA 58.651 39.130 0.00 0.00 34.14 2.44
1739 1824 4.159693 ACTGTTCCTTCCCAAAGACAAAAC 59.840 41.667 0.00 0.00 34.14 2.43
1748 1836 7.706607 CCTTCCCAAAGACAAAACTTAAGAAAG 59.293 37.037 10.09 0.00 35.23 2.62
1750 1838 6.153680 TCCCAAAGACAAAACTTAAGAAAGCA 59.846 34.615 10.09 0.00 36.05 3.91
1880 1968 3.619979 GCAGTTACTGTAGCCAATCCTGT 60.620 47.826 14.23 0.00 33.43 4.00
1904 1992 8.469200 TGTTTTCCATCATCCATATTTGACTTC 58.531 33.333 0.00 0.00 0.00 3.01
1954 2042 0.193574 TATCCATCACCCCCTCCCTC 59.806 60.000 0.00 0.00 0.00 4.30
1978 2066 6.815641 TCTGAAAATAGAAGCAGCTTAGACAG 59.184 38.462 7.92 10.67 0.00 3.51
2002 2090 5.104527 GGCCACCATTATATGCTCTATACCA 60.105 44.000 0.00 0.00 0.00 3.25
2051 2139 4.752879 CGCCCACAACCGACCGAT 62.753 66.667 0.00 0.00 0.00 4.18
2095 2184 0.258774 GCCATCCAACATGGTACCCT 59.741 55.000 10.07 0.00 41.17 4.34
2099 2188 3.557054 CCATCCAACATGGTACCCTATCG 60.557 52.174 10.07 0.00 39.03 2.92
2102 2191 2.171870 CCAACATGGTACCCTATCGGTT 59.828 50.000 10.07 2.03 46.98 4.44
2107 2196 0.677842 GGTACCCTATCGGTTCGCAT 59.322 55.000 0.00 0.00 45.36 4.73
2175 2264 3.913573 CGCTGCCACATACGCGTC 61.914 66.667 18.63 0.00 40.64 5.19
2204 2293 4.574828 CCAAGACCCAACCATAAAGATACG 59.425 45.833 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 143 3.967886 CGGCTTGATAGACCGTCAT 57.032 52.632 0.40 0.00 42.01 3.06
167 205 1.079405 GCCGGTGAGGTCGATGAAA 60.079 57.895 1.90 0.00 43.70 2.69
222 266 1.915078 GCCCACACACAGCCCTAGAT 61.915 60.000 0.00 0.00 0.00 1.98
368 420 6.020995 ACACAAATTTACACGCGAAGAAAAAG 60.021 34.615 15.93 6.37 0.00 2.27
453 510 2.600475 CGTCCGTTTGGGTTGACCG 61.600 63.158 0.00 0.00 44.64 4.79
456 513 1.747709 TTTTCGTCCGTTTGGGTTGA 58.252 45.000 0.00 0.00 37.00 3.18
489 546 2.951642 ACGTGCCAATCTAAATGGATGG 59.048 45.455 0.00 0.00 40.56 3.51
499 556 1.238439 CAACTCCAACGTGCCAATCT 58.762 50.000 0.00 0.00 0.00 2.40
527 584 0.894835 TATGCAGCGTTCAGACCTGA 59.105 50.000 0.00 0.00 37.91 3.86
528 585 1.945387 ATATGCAGCGTTCAGACCTG 58.055 50.000 0.00 0.00 0.00 4.00
529 586 4.767409 TCTATATATGCAGCGTTCAGACCT 59.233 41.667 0.00 0.00 0.00 3.85
530 587 5.060662 TCTATATATGCAGCGTTCAGACC 57.939 43.478 0.00 0.00 0.00 3.85
531 588 5.346281 GGTTCTATATATGCAGCGTTCAGAC 59.654 44.000 0.00 0.00 0.00 3.51
532 589 5.010617 TGGTTCTATATATGCAGCGTTCAGA 59.989 40.000 0.00 0.00 0.00 3.27
533 590 5.119279 GTGGTTCTATATATGCAGCGTTCAG 59.881 44.000 0.00 0.00 0.00 3.02
534 591 4.988540 GTGGTTCTATATATGCAGCGTTCA 59.011 41.667 0.00 0.00 0.00 3.18
535 592 4.090066 CGTGGTTCTATATATGCAGCGTTC 59.910 45.833 0.00 0.00 0.00 3.95
536 593 3.987868 CGTGGTTCTATATATGCAGCGTT 59.012 43.478 0.00 0.00 0.00 4.84
537 594 3.575630 CGTGGTTCTATATATGCAGCGT 58.424 45.455 0.00 0.00 0.00 5.07
538 595 2.345641 GCGTGGTTCTATATATGCAGCG 59.654 50.000 0.00 0.00 0.00 5.18
539 596 3.123621 GTGCGTGGTTCTATATATGCAGC 59.876 47.826 0.00 0.00 35.91 5.25
540 597 4.386954 CAGTGCGTGGTTCTATATATGCAG 59.613 45.833 0.00 0.00 35.91 4.41
541 598 4.202212 ACAGTGCGTGGTTCTATATATGCA 60.202 41.667 0.00 0.00 33.09 3.96
542 599 4.307432 ACAGTGCGTGGTTCTATATATGC 58.693 43.478 0.00 0.00 0.00 3.14
543 600 4.923871 GGACAGTGCGTGGTTCTATATATG 59.076 45.833 0.00 0.00 0.00 1.78
544 601 4.587262 TGGACAGTGCGTGGTTCTATATAT 59.413 41.667 0.00 0.00 0.00 0.86
545 602 3.955551 TGGACAGTGCGTGGTTCTATATA 59.044 43.478 0.00 0.00 0.00 0.86
546 603 2.764010 TGGACAGTGCGTGGTTCTATAT 59.236 45.455 0.00 0.00 0.00 0.86
547 604 2.172679 TGGACAGTGCGTGGTTCTATA 58.827 47.619 0.00 0.00 0.00 1.31
548 605 0.973632 TGGACAGTGCGTGGTTCTAT 59.026 50.000 0.00 0.00 0.00 1.98
549 606 0.753867 TTGGACAGTGCGTGGTTCTA 59.246 50.000 0.00 0.00 0.00 2.10
550 607 0.814010 GTTGGACAGTGCGTGGTTCT 60.814 55.000 0.00 0.00 0.00 3.01
551 608 1.647084 GTTGGACAGTGCGTGGTTC 59.353 57.895 0.00 0.00 0.00 3.62
552 609 1.822186 GGTTGGACAGTGCGTGGTT 60.822 57.895 0.00 0.00 0.00 3.67
553 610 2.203153 GGTTGGACAGTGCGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
554 611 3.345808 CGGTTGGACAGTGCGTGG 61.346 66.667 0.00 0.00 0.00 4.94
555 612 4.012895 GCGGTTGGACAGTGCGTG 62.013 66.667 0.00 0.00 0.00 5.34
556 613 4.539083 TGCGGTTGGACAGTGCGT 62.539 61.111 0.00 0.00 0.00 5.24
557 614 4.012895 GTGCGGTTGGACAGTGCG 62.013 66.667 0.00 0.00 36.29 5.34
558 615 2.899838 TGTGCGGTTGGACAGTGC 60.900 61.111 0.00 0.00 41.94 4.40
562 619 4.920112 CCGGTGTGCGGTTGGACA 62.920 66.667 0.00 0.00 44.86 4.02
566 623 4.920112 TGTCCCGGTGTGCGGTTG 62.920 66.667 0.00 0.00 0.00 3.77
567 624 4.619227 CTGTCCCGGTGTGCGGTT 62.619 66.667 0.00 0.00 0.00 4.44
573 630 4.602259 CACGCACTGTCCCGGTGT 62.602 66.667 0.00 0.00 42.21 4.16
576 633 4.619227 AACCACGCACTGTCCCGG 62.619 66.667 0.00 0.00 0.00 5.73
577 634 3.345808 CAACCACGCACTGTCCCG 61.346 66.667 0.00 0.00 0.00 5.14
578 635 3.660111 GCAACCACGCACTGTCCC 61.660 66.667 0.00 0.00 0.00 4.46
579 636 4.012895 CGCAACCACGCACTGTCC 62.013 66.667 0.00 0.00 0.00 4.02
580 637 2.964925 TCGCAACCACGCACTGTC 60.965 61.111 0.00 0.00 0.00 3.51
581 638 3.269347 GTCGCAACCACGCACTGT 61.269 61.111 0.00 0.00 0.00 3.55
582 639 4.354212 CGTCGCAACCACGCACTG 62.354 66.667 0.00 0.00 0.00 3.66
585 642 4.281947 TACCGTCGCAACCACGCA 62.282 61.111 0.00 0.00 35.87 5.24
586 643 3.770424 GTACCGTCGCAACCACGC 61.770 66.667 0.00 0.00 35.87 5.34
587 644 3.463690 CGTACCGTCGCAACCACG 61.464 66.667 0.00 0.00 36.99 4.94
595 652 0.799534 CCCTACAAAGCGTACCGTCG 60.800 60.000 0.00 0.00 0.00 5.12
596 653 1.080435 GCCCTACAAAGCGTACCGTC 61.080 60.000 0.00 0.00 0.00 4.79
597 654 1.079612 GCCCTACAAAGCGTACCGT 60.080 57.895 0.00 0.00 0.00 4.83
598 655 1.082117 CAGCCCTACAAAGCGTACCG 61.082 60.000 0.00 0.00 0.00 4.02
599 656 0.743345 CCAGCCCTACAAAGCGTACC 60.743 60.000 0.00 0.00 0.00 3.34
600 657 0.036671 ACCAGCCCTACAAAGCGTAC 60.037 55.000 0.00 0.00 0.00 3.67
601 658 0.036765 CACCAGCCCTACAAAGCGTA 60.037 55.000 0.00 0.00 0.00 4.42
602 659 1.302511 CACCAGCCCTACAAAGCGT 60.303 57.895 0.00 0.00 0.00 5.07
603 660 0.605319 TTCACCAGCCCTACAAAGCG 60.605 55.000 0.00 0.00 0.00 4.68
604 661 1.168714 CTTCACCAGCCCTACAAAGC 58.831 55.000 0.00 0.00 0.00 3.51
605 662 1.168714 GCTTCACCAGCCCTACAAAG 58.831 55.000 0.00 0.00 43.65 2.77
606 663 3.339547 GCTTCACCAGCCCTACAAA 57.660 52.632 0.00 0.00 43.65 2.83
615 672 2.952245 GTGCAGCTGCTTCACCAG 59.048 61.111 36.61 0.00 42.66 4.00
618 675 1.505353 GATGGTGCAGCTGCTTCAC 59.495 57.895 36.61 26.51 42.66 3.18
619 676 1.676635 GGATGGTGCAGCTGCTTCA 60.677 57.895 36.61 31.39 42.66 3.02
620 677 1.035932 ATGGATGGTGCAGCTGCTTC 61.036 55.000 36.61 27.66 42.66 3.86
621 678 0.256752 TATGGATGGTGCAGCTGCTT 59.743 50.000 36.61 20.03 42.66 3.91
622 679 0.477204 ATATGGATGGTGCAGCTGCT 59.523 50.000 36.61 19.14 42.66 4.24
623 680 1.268899 GAATATGGATGGTGCAGCTGC 59.731 52.381 31.89 31.89 42.50 5.25
624 681 1.884579 GGAATATGGATGGTGCAGCTG 59.115 52.381 18.08 10.11 0.00 4.24
625 682 1.779092 AGGAATATGGATGGTGCAGCT 59.221 47.619 18.08 2.29 0.00 4.24
626 683 2.157738 GAGGAATATGGATGGTGCAGC 58.842 52.381 9.47 9.47 0.00 5.25
627 684 2.420642 CGAGGAATATGGATGGTGCAG 58.579 52.381 0.00 0.00 0.00 4.41
628 685 1.543208 GCGAGGAATATGGATGGTGCA 60.543 52.381 0.00 0.00 0.00 4.57
629 686 1.160137 GCGAGGAATATGGATGGTGC 58.840 55.000 0.00 0.00 0.00 5.01
630 687 1.432514 CGCGAGGAATATGGATGGTG 58.567 55.000 0.00 0.00 0.00 4.17
631 688 0.320771 GCGCGAGGAATATGGATGGT 60.321 55.000 12.10 0.00 0.00 3.55
632 689 1.021390 GGCGCGAGGAATATGGATGG 61.021 60.000 12.10 0.00 0.00 3.51
633 690 0.036952 AGGCGCGAGGAATATGGATG 60.037 55.000 12.10 0.00 0.00 3.51
634 691 1.557099 TAGGCGCGAGGAATATGGAT 58.443 50.000 12.10 0.00 0.00 3.41
635 692 1.557099 ATAGGCGCGAGGAATATGGA 58.443 50.000 12.10 0.00 0.00 3.41
636 693 2.386661 AATAGGCGCGAGGAATATGG 57.613 50.000 12.10 0.00 0.00 2.74
637 694 2.345641 CGAAATAGGCGCGAGGAATATG 59.654 50.000 12.10 0.00 0.00 1.78
638 695 2.029290 ACGAAATAGGCGCGAGGAATAT 60.029 45.455 12.10 0.00 0.00 1.28
639 696 1.338973 ACGAAATAGGCGCGAGGAATA 59.661 47.619 12.10 0.00 0.00 1.75
640 697 0.104304 ACGAAATAGGCGCGAGGAAT 59.896 50.000 12.10 0.00 0.00 3.01
641 698 0.108520 AACGAAATAGGCGCGAGGAA 60.109 50.000 12.10 0.00 0.00 3.36
642 699 0.108520 AAACGAAATAGGCGCGAGGA 60.109 50.000 12.10 0.00 0.00 3.71
643 700 0.300789 GAAACGAAATAGGCGCGAGG 59.699 55.000 12.10 0.00 0.00 4.63
644 701 0.300789 GGAAACGAAATAGGCGCGAG 59.699 55.000 12.10 0.00 0.00 5.03
645 702 1.085501 GGGAAACGAAATAGGCGCGA 61.086 55.000 12.10 0.00 0.00 5.87
646 703 1.350665 GGGAAACGAAATAGGCGCG 59.649 57.895 0.00 0.00 0.00 6.86
647 704 1.021968 ATGGGAAACGAAATAGGCGC 58.978 50.000 0.00 0.00 0.00 6.53
648 705 2.680841 TGAATGGGAAACGAAATAGGCG 59.319 45.455 0.00 0.00 0.00 5.52
649 706 4.338118 TGATGAATGGGAAACGAAATAGGC 59.662 41.667 0.00 0.00 0.00 3.93
650 707 5.590259 ACTGATGAATGGGAAACGAAATAGG 59.410 40.000 0.00 0.00 0.00 2.57
651 708 6.458751 CCACTGATGAATGGGAAACGAAATAG 60.459 42.308 0.00 0.00 31.83 1.73
652 709 5.356751 CCACTGATGAATGGGAAACGAAATA 59.643 40.000 0.00 0.00 31.83 1.40
653 710 4.158394 CCACTGATGAATGGGAAACGAAAT 59.842 41.667 0.00 0.00 31.83 2.17
654 711 3.505680 CCACTGATGAATGGGAAACGAAA 59.494 43.478 0.00 0.00 31.83 3.46
655 712 3.081061 CCACTGATGAATGGGAAACGAA 58.919 45.455 0.00 0.00 31.83 3.85
656 713 2.039746 ACCACTGATGAATGGGAAACGA 59.960 45.455 0.00 0.00 40.59 3.85
657 714 2.436417 ACCACTGATGAATGGGAAACG 58.564 47.619 0.00 0.00 40.59 3.60
658 715 6.530019 AATAACCACTGATGAATGGGAAAC 57.470 37.500 0.00 0.00 40.59 2.78
659 716 8.837099 AATAATAACCACTGATGAATGGGAAA 57.163 30.769 0.00 0.00 40.59 3.13
660 717 8.058235 TGAATAATAACCACTGATGAATGGGAA 58.942 33.333 0.00 0.00 40.59 3.97
661 718 7.581814 TGAATAATAACCACTGATGAATGGGA 58.418 34.615 0.00 0.00 40.59 4.37
662 719 7.822161 TGAATAATAACCACTGATGAATGGG 57.178 36.000 0.00 0.00 40.59 4.00
663 720 9.293404 AGATGAATAATAACCACTGATGAATGG 57.707 33.333 0.00 0.00 42.13 3.16
665 722 9.212641 CGAGATGAATAATAACCACTGATGAAT 57.787 33.333 0.00 0.00 0.00 2.57
666 723 8.204160 ACGAGATGAATAATAACCACTGATGAA 58.796 33.333 0.00 0.00 0.00 2.57
667 724 7.726216 ACGAGATGAATAATAACCACTGATGA 58.274 34.615 0.00 0.00 0.00 2.92
668 725 7.653311 TGACGAGATGAATAATAACCACTGATG 59.347 37.037 0.00 0.00 0.00 3.07
669 726 7.726216 TGACGAGATGAATAATAACCACTGAT 58.274 34.615 0.00 0.00 0.00 2.90
670 727 7.107639 TGACGAGATGAATAATAACCACTGA 57.892 36.000 0.00 0.00 0.00 3.41
671 728 7.492669 AGTTGACGAGATGAATAATAACCACTG 59.507 37.037 0.00 0.00 0.00 3.66
672 729 7.556844 AGTTGACGAGATGAATAATAACCACT 58.443 34.615 0.00 0.00 0.00 4.00
673 730 7.491372 TGAGTTGACGAGATGAATAATAACCAC 59.509 37.037 0.00 0.00 0.00 4.16
674 731 7.552459 TGAGTTGACGAGATGAATAATAACCA 58.448 34.615 0.00 0.00 0.00 3.67
675 732 8.420374 TTGAGTTGACGAGATGAATAATAACC 57.580 34.615 0.00 0.00 0.00 2.85
678 735 8.879759 GGTTTTGAGTTGACGAGATGAATAATA 58.120 33.333 0.00 0.00 0.00 0.98
679 736 7.148239 GGGTTTTGAGTTGACGAGATGAATAAT 60.148 37.037 0.00 0.00 0.00 1.28
680 737 6.148811 GGGTTTTGAGTTGACGAGATGAATAA 59.851 38.462 0.00 0.00 0.00 1.40
681 738 5.642063 GGGTTTTGAGTTGACGAGATGAATA 59.358 40.000 0.00 0.00 0.00 1.75
682 739 4.455877 GGGTTTTGAGTTGACGAGATGAAT 59.544 41.667 0.00 0.00 0.00 2.57
683 740 3.813166 GGGTTTTGAGTTGACGAGATGAA 59.187 43.478 0.00 0.00 0.00 2.57
684 741 3.181459 TGGGTTTTGAGTTGACGAGATGA 60.181 43.478 0.00 0.00 0.00 2.92
685 742 3.138304 TGGGTTTTGAGTTGACGAGATG 58.862 45.455 0.00 0.00 0.00 2.90
686 743 3.403038 CTGGGTTTTGAGTTGACGAGAT 58.597 45.455 0.00 0.00 0.00 2.75
687 744 2.833794 CTGGGTTTTGAGTTGACGAGA 58.166 47.619 0.00 0.00 0.00 4.04
688 745 1.264288 GCTGGGTTTTGAGTTGACGAG 59.736 52.381 0.00 0.00 0.00 4.18
689 746 1.305201 GCTGGGTTTTGAGTTGACGA 58.695 50.000 0.00 0.00 0.00 4.20
690 747 0.041312 CGCTGGGTTTTGAGTTGACG 60.041 55.000 0.00 0.00 0.00 4.35
691 748 1.021968 ACGCTGGGTTTTGAGTTGAC 58.978 50.000 0.00 0.00 0.00 3.18
692 749 1.021202 CACGCTGGGTTTTGAGTTGA 58.979 50.000 0.00 0.00 0.00 3.18
693 750 0.738389 ACACGCTGGGTTTTGAGTTG 59.262 50.000 0.00 0.00 0.00 3.16
694 751 0.738389 CACACGCTGGGTTTTGAGTT 59.262 50.000 0.00 0.00 0.00 3.01
695 752 0.393808 ACACACGCTGGGTTTTGAGT 60.394 50.000 9.44 0.00 21.35 3.41
696 753 0.307760 GACACACGCTGGGTTTTGAG 59.692 55.000 9.44 0.00 31.64 3.02
697 754 0.107410 AGACACACGCTGGGTTTTGA 60.107 50.000 9.44 0.00 31.64 2.69
698 755 0.029300 CAGACACACGCTGGGTTTTG 59.971 55.000 0.00 0.00 31.64 2.44
699 756 0.393808 ACAGACACACGCTGGGTTTT 60.394 50.000 0.00 0.00 31.64 2.43
700 757 0.393808 AACAGACACACGCTGGGTTT 60.394 50.000 0.00 0.00 31.64 3.27
701 758 0.393808 AAACAGACACACGCTGGGTT 60.394 50.000 0.00 0.00 31.64 4.11
702 759 1.095228 CAAACAGACACACGCTGGGT 61.095 55.000 0.00 0.00 36.19 4.51
703 760 1.095228 ACAAACAGACACACGCTGGG 61.095 55.000 0.00 0.00 37.69 4.45
704 761 0.304705 GACAAACAGACACACGCTGG 59.695 55.000 0.00 0.00 37.69 4.85
705 762 1.004610 CAGACAAACAGACACACGCTG 60.005 52.381 0.00 0.00 39.26 5.18
706 763 1.290203 CAGACAAACAGACACACGCT 58.710 50.000 0.00 0.00 0.00 5.07
707 764 1.004927 GACAGACAAACAGACACACGC 60.005 52.381 0.00 0.00 0.00 5.34
708 765 2.282555 CAGACAGACAAACAGACACACG 59.717 50.000 0.00 0.00 0.00 4.49
709 766 2.609459 CCAGACAGACAAACAGACACAC 59.391 50.000 0.00 0.00 0.00 3.82
710 767 2.905075 CCAGACAGACAAACAGACACA 58.095 47.619 0.00 0.00 0.00 3.72
711 768 1.599542 GCCAGACAGACAAACAGACAC 59.400 52.381 0.00 0.00 0.00 3.67
712 769 1.475034 GGCCAGACAGACAAACAGACA 60.475 52.381 0.00 0.00 0.00 3.41
713 770 1.230324 GGCCAGACAGACAAACAGAC 58.770 55.000 0.00 0.00 0.00 3.51
714 771 0.249868 CGGCCAGACAGACAAACAGA 60.250 55.000 2.24 0.00 0.00 3.41
715 772 0.532862 ACGGCCAGACAGACAAACAG 60.533 55.000 2.24 0.00 0.00 3.16
716 773 0.531974 GACGGCCAGACAGACAAACA 60.532 55.000 2.24 0.00 0.00 2.83
717 774 0.249911 AGACGGCCAGACAGACAAAC 60.250 55.000 2.24 0.00 0.00 2.93
718 775 0.249868 CAGACGGCCAGACAGACAAA 60.250 55.000 2.24 0.00 0.00 2.83
719 776 1.367471 CAGACGGCCAGACAGACAA 59.633 57.895 2.24 0.00 0.00 3.18
720 777 1.806461 GACAGACGGCCAGACAGACA 61.806 60.000 2.24 0.00 0.00 3.41
721 778 1.080434 GACAGACGGCCAGACAGAC 60.080 63.158 2.24 0.00 0.00 3.51
722 779 1.228583 AGACAGACGGCCAGACAGA 60.229 57.895 2.24 0.00 0.00 3.41
723 780 1.080230 CAGACAGACGGCCAGACAG 60.080 63.158 2.24 0.00 0.00 3.51
724 781 1.806461 GACAGACAGACGGCCAGACA 61.806 60.000 2.24 0.00 0.00 3.41
725 782 1.080434 GACAGACAGACGGCCAGAC 60.080 63.158 2.24 0.00 0.00 3.51
726 783 0.900182 ATGACAGACAGACGGCCAGA 60.900 55.000 2.24 0.00 0.00 3.86
727 784 0.036952 AATGACAGACAGACGGCCAG 60.037 55.000 2.24 0.00 0.00 4.85
728 785 0.037326 GAATGACAGACAGACGGCCA 60.037 55.000 2.24 0.00 0.00 5.36
729 786 0.741221 GGAATGACAGACAGACGGCC 60.741 60.000 0.00 0.00 0.00 6.13
730 787 0.741221 GGGAATGACAGACAGACGGC 60.741 60.000 0.00 0.00 0.00 5.68
731 788 0.898320 AGGGAATGACAGACAGACGG 59.102 55.000 0.00 0.00 0.00 4.79
732 789 1.134965 GGAGGGAATGACAGACAGACG 60.135 57.143 0.00 0.00 0.00 4.18
733 790 1.134965 CGGAGGGAATGACAGACAGAC 60.135 57.143 0.00 0.00 0.00 3.51
734 791 1.186200 CGGAGGGAATGACAGACAGA 58.814 55.000 0.00 0.00 0.00 3.41
735 792 1.186200 TCGGAGGGAATGACAGACAG 58.814 55.000 0.00 0.00 0.00 3.51
736 793 1.757118 GATCGGAGGGAATGACAGACA 59.243 52.381 0.00 0.00 0.00 3.41
737 794 1.757118 TGATCGGAGGGAATGACAGAC 59.243 52.381 0.00 0.00 0.00 3.51
738 795 2.159179 TGATCGGAGGGAATGACAGA 57.841 50.000 0.00 0.00 0.00 3.41
739 796 2.432146 TCTTGATCGGAGGGAATGACAG 59.568 50.000 0.00 0.00 0.00 3.51
740 797 2.432146 CTCTTGATCGGAGGGAATGACA 59.568 50.000 7.40 0.00 0.00 3.58
741 798 2.804933 GCTCTTGATCGGAGGGAATGAC 60.805 54.545 14.56 0.00 0.00 3.06
742 799 1.414181 GCTCTTGATCGGAGGGAATGA 59.586 52.381 14.56 0.00 0.00 2.57
743 800 1.415659 AGCTCTTGATCGGAGGGAATG 59.584 52.381 14.56 0.00 0.00 2.67
744 801 1.799933 AGCTCTTGATCGGAGGGAAT 58.200 50.000 14.56 0.00 0.00 3.01
745 802 2.091830 TCTAGCTCTTGATCGGAGGGAA 60.092 50.000 14.56 0.00 0.00 3.97
746 803 1.495148 TCTAGCTCTTGATCGGAGGGA 59.505 52.381 14.56 0.00 0.00 4.20
747 804 1.885887 CTCTAGCTCTTGATCGGAGGG 59.114 57.143 14.56 4.88 0.00 4.30
748 805 1.269448 GCTCTAGCTCTTGATCGGAGG 59.731 57.143 14.56 2.36 38.21 4.30
749 806 1.269448 GGCTCTAGCTCTTGATCGGAG 59.731 57.143 10.12 10.12 41.70 4.63
750 807 1.323412 GGCTCTAGCTCTTGATCGGA 58.677 55.000 1.39 0.00 41.70 4.55
751 808 1.000385 CTGGCTCTAGCTCTTGATCGG 60.000 57.143 1.39 0.00 41.70 4.18
752 809 1.680735 ACTGGCTCTAGCTCTTGATCG 59.319 52.381 1.39 0.00 41.70 3.69
753 810 2.287547 CGACTGGCTCTAGCTCTTGATC 60.288 54.545 1.39 0.00 41.70 2.92
754 811 1.680735 CGACTGGCTCTAGCTCTTGAT 59.319 52.381 1.39 0.00 41.70 2.57
755 812 1.098869 CGACTGGCTCTAGCTCTTGA 58.901 55.000 1.39 0.00 41.70 3.02
756 813 0.814457 ACGACTGGCTCTAGCTCTTG 59.186 55.000 1.39 0.00 41.70 3.02
757 814 1.474879 GAACGACTGGCTCTAGCTCTT 59.525 52.381 1.39 0.00 41.70 2.85
758 815 1.099689 GAACGACTGGCTCTAGCTCT 58.900 55.000 1.39 0.00 41.70 4.09
759 816 1.099689 AGAACGACTGGCTCTAGCTC 58.900 55.000 1.39 0.00 41.70 4.09
760 817 2.421751 TAGAACGACTGGCTCTAGCT 57.578 50.000 1.39 0.00 41.70 3.32
761 818 3.719173 AATAGAACGACTGGCTCTAGC 57.281 47.619 0.00 0.00 41.14 3.42
762 819 5.978322 GGTTAAATAGAACGACTGGCTCTAG 59.022 44.000 0.00 0.00 0.00 2.43
763 820 5.419788 TGGTTAAATAGAACGACTGGCTCTA 59.580 40.000 0.00 0.00 0.00 2.43
764 821 4.222145 TGGTTAAATAGAACGACTGGCTCT 59.778 41.667 0.00 0.00 0.00 4.09
765 822 4.329256 GTGGTTAAATAGAACGACTGGCTC 59.671 45.833 0.00 0.00 35.75 4.70
766 823 4.251268 GTGGTTAAATAGAACGACTGGCT 58.749 43.478 0.00 0.00 35.75 4.75
767 824 3.373130 GGTGGTTAAATAGAACGACTGGC 59.627 47.826 0.00 0.00 37.94 4.85
768 825 4.390909 GTGGTGGTTAAATAGAACGACTGG 59.609 45.833 0.00 0.00 37.94 4.00
769 826 4.090930 CGTGGTGGTTAAATAGAACGACTG 59.909 45.833 0.00 0.00 37.94 3.51
770 827 4.240096 CGTGGTGGTTAAATAGAACGACT 58.760 43.478 0.00 0.00 37.94 4.18
771 828 3.368843 CCGTGGTGGTTAAATAGAACGAC 59.631 47.826 0.00 0.00 37.33 4.34
772 829 3.587923 CCGTGGTGGTTAAATAGAACGA 58.412 45.455 0.00 0.00 31.76 3.85
773 830 2.674357 CCCGTGGTGGTTAAATAGAACG 59.326 50.000 0.00 0.00 35.15 3.95
794 851 2.699321 GGAGGAGAATACAGGTGGGTAC 59.301 54.545 0.00 0.00 0.00 3.34
880 937 2.006888 CGTTGGACATGGATACCACAC 58.993 52.381 0.00 2.79 35.80 3.82
881 938 1.626321 ACGTTGGACATGGATACCACA 59.374 47.619 0.00 0.00 35.80 4.17
882 939 2.006888 CACGTTGGACATGGATACCAC 58.993 52.381 0.00 0.00 35.80 4.16
900 957 3.277742 GACGGCGCGACAAACTCAC 62.278 63.158 14.85 0.00 0.00 3.51
921 978 0.326595 TAGCTGAATTCCACCGGCAA 59.673 50.000 0.00 0.00 37.14 4.52
963 1020 1.001181 CCCCGGACGAAAAACTCTACA 59.999 52.381 0.73 0.00 0.00 2.74
1253 1313 5.536916 AGAGGAAGAAGAAGAAGAAGACGAA 59.463 40.000 0.00 0.00 0.00 3.85
1254 1314 5.074115 AGAGGAAGAAGAAGAAGAAGACGA 58.926 41.667 0.00 0.00 0.00 4.20
1257 1317 7.288852 TGAAGAAGAGGAAGAAGAAGAAGAAGA 59.711 37.037 0.00 0.00 0.00 2.87
1258 1318 7.384932 GTGAAGAAGAGGAAGAAGAAGAAGAAG 59.615 40.741 0.00 0.00 0.00 2.85
1259 1319 7.147655 TGTGAAGAAGAGGAAGAAGAAGAAGAA 60.148 37.037 0.00 0.00 0.00 2.52
1260 1320 6.325028 TGTGAAGAAGAGGAAGAAGAAGAAGA 59.675 38.462 0.00 0.00 0.00 2.87
1261 1321 6.520272 TGTGAAGAAGAGGAAGAAGAAGAAG 58.480 40.000 0.00 0.00 0.00 2.85
1262 1322 6.485830 TGTGAAGAAGAGGAAGAAGAAGAA 57.514 37.500 0.00 0.00 0.00 2.52
1263 1323 6.485830 TTGTGAAGAAGAGGAAGAAGAAGA 57.514 37.500 0.00 0.00 0.00 2.87
1264 1324 6.989169 TCTTTGTGAAGAAGAGGAAGAAGAAG 59.011 38.462 0.00 0.00 38.91 2.85
1265 1325 6.889198 TCTTTGTGAAGAAGAGGAAGAAGAA 58.111 36.000 0.00 0.00 38.91 2.52
1294 1354 2.088104 TAGGACATAGGGCAGGACAG 57.912 55.000 0.00 0.00 0.00 3.51
1297 1357 2.679082 GACTTAGGACATAGGGCAGGA 58.321 52.381 0.00 0.00 0.00 3.86
1308 1368 2.450476 TCACGGGTTAGGACTTAGGAC 58.550 52.381 0.00 0.00 0.00 3.85
1309 1369 2.905415 TCACGGGTTAGGACTTAGGA 57.095 50.000 0.00 0.00 0.00 2.94
1310 1370 2.830321 ACTTCACGGGTTAGGACTTAGG 59.170 50.000 0.00 0.00 0.00 2.69
1311 1371 4.532314 AACTTCACGGGTTAGGACTTAG 57.468 45.455 0.00 0.00 0.00 2.18
1312 1372 4.961438 AAACTTCACGGGTTAGGACTTA 57.039 40.909 0.00 0.00 0.00 2.24
1313 1373 3.851458 AAACTTCACGGGTTAGGACTT 57.149 42.857 0.00 0.00 0.00 3.01
1314 1374 3.899980 ACTAAACTTCACGGGTTAGGACT 59.100 43.478 4.65 0.00 0.00 3.85
1342 1402 3.729526 GCAACCGTATGCATATGCTAG 57.270 47.619 27.13 15.19 45.70 3.42
1353 1413 5.483685 ACATCCACTATATGCAACCGTAT 57.516 39.130 0.00 0.00 0.00 3.06
1363 1423 9.461312 TGTTTGCTTTCTTTACATCCACTATAT 57.539 29.630 0.00 0.00 0.00 0.86
1364 1424 8.856153 TGTTTGCTTTCTTTACATCCACTATA 57.144 30.769 0.00 0.00 0.00 1.31
1467 1551 4.457257 ACAGCTAAATGGAAGAGCAAGTTC 59.543 41.667 0.00 0.00 38.73 3.01
1491 1575 5.581874 AGTTTGCAATGGTTGAAGTTCTTTG 59.418 36.000 0.00 2.42 0.00 2.77
1506 1590 2.238521 ACGTTGATCCCAGTTTGCAAT 58.761 42.857 0.00 0.00 0.00 3.56
1579 1663 5.769662 TGGCACAACTGATAAAAAGTGATCT 59.230 36.000 0.00 0.00 31.92 2.75
1659 1744 6.183360 CGCACGACTAAACACAACTTGTATAT 60.183 38.462 0.00 0.00 37.51 0.86
1686 1771 2.916716 TGAAACCGTACGTAAAGCGATC 59.083 45.455 15.21 1.89 44.77 3.69
1716 1801 3.662759 TTGTCTTTGGGAAGGAACAGT 57.337 42.857 0.00 0.00 33.56 3.55
1726 1811 6.337356 TGCTTTCTTAAGTTTTGTCTTTGGG 58.663 36.000 1.63 0.00 33.74 4.12
1731 1816 7.716998 TCTCATCTGCTTTCTTAAGTTTTGTCT 59.283 33.333 1.63 0.00 33.74 3.41
1734 1819 8.509690 TCATCTCATCTGCTTTCTTAAGTTTTG 58.490 33.333 1.63 0.00 33.74 2.44
1738 1823 6.991531 GGATCATCTCATCTGCTTTCTTAAGT 59.008 38.462 1.63 0.00 33.74 2.24
1739 1824 6.427547 GGGATCATCTCATCTGCTTTCTTAAG 59.572 42.308 0.00 0.00 34.36 1.85
1748 1836 3.766068 TCTTGGGATCATCTCATCTGC 57.234 47.619 0.00 0.00 0.00 4.26
1750 1838 6.041865 CAGTACTTCTTGGGATCATCTCATCT 59.958 42.308 0.00 0.00 0.00 2.90
1860 1948 4.910458 AACAGGATTGGCTACAGTAACT 57.090 40.909 0.00 0.00 0.00 2.24
1861 1949 5.106277 GGAAAACAGGATTGGCTACAGTAAC 60.106 44.000 0.00 0.00 0.00 2.50
1862 1950 5.007682 GGAAAACAGGATTGGCTACAGTAA 58.992 41.667 0.00 0.00 0.00 2.24
1863 1951 4.042311 TGGAAAACAGGATTGGCTACAGTA 59.958 41.667 0.00 0.00 0.00 2.74
1864 1952 3.181434 TGGAAAACAGGATTGGCTACAGT 60.181 43.478 0.00 0.00 0.00 3.55
1865 1953 3.420893 TGGAAAACAGGATTGGCTACAG 58.579 45.455 0.00 0.00 0.00 2.74
1866 1954 3.517296 TGGAAAACAGGATTGGCTACA 57.483 42.857 0.00 0.00 0.00 2.74
1867 1955 4.016444 TGATGGAAAACAGGATTGGCTAC 58.984 43.478 0.00 0.00 0.00 3.58
1868 1956 4.314522 TGATGGAAAACAGGATTGGCTA 57.685 40.909 0.00 0.00 0.00 3.93
1869 1957 3.173953 TGATGGAAAACAGGATTGGCT 57.826 42.857 0.00 0.00 0.00 4.75
1870 1958 3.181472 GGATGATGGAAAACAGGATTGGC 60.181 47.826 0.00 0.00 0.00 4.52
1880 1968 7.069826 GGGAAGTCAAATATGGATGATGGAAAA 59.930 37.037 0.00 0.00 0.00 2.29
1954 2042 6.036953 CCTGTCTAAGCTGCTTCTATTTTCAG 59.963 42.308 19.62 16.14 0.00 3.02
1978 2066 5.104527 TGGTATAGAGCATATAATGGTGGCC 60.105 44.000 0.00 0.00 41.77 5.36
2002 2090 0.331616 GTGTTGGGATGCCCTTAGGT 59.668 55.000 0.00 0.00 45.70 3.08
2122 2211 2.464459 GCCCTCTGATTTGCGTCCG 61.464 63.158 0.00 0.00 0.00 4.79
2175 2264 2.033602 GTTGGGTCTTGGGGACGG 59.966 66.667 0.00 0.00 45.35 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.