Multiple sequence alignment - TraesCS2B01G529100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G529100 chr2B 100.000 2594 0 0 1 2594 723445610 723448203 0.000000e+00 4791.0
1 TraesCS2B01G529100 chr2B 80.350 514 81 14 2073 2575 168077802 168077298 3.150000e-99 372.0
2 TraesCS2B01G529100 chr2D 95.971 968 37 2 677 1643 595556614 595557580 0.000000e+00 1570.0
3 TraesCS2B01G529100 chr2D 82.671 554 80 10 2051 2593 265753916 265754464 6.490000e-131 477.0
4 TraesCS2B01G529100 chr2D 82.130 554 83 11 2050 2593 265851821 265852368 6.540000e-126 460.0
5 TraesCS2B01G529100 chr2D 93.770 305 14 2 1645 1949 595557611 595557910 1.090000e-123 453.0
6 TraesCS2B01G529100 chr2D 80.632 506 74 16 2050 2540 117794868 117794372 1.130000e-98 370.0
7 TraesCS2B01G529100 chr2D 97.163 141 4 0 1 141 595548950 595549090 3.340000e-59 239.0
8 TraesCS2B01G529100 chr2D 89.697 165 11 2 520 678 445733668 445733832 3.380000e-49 206.0
9 TraesCS2B01G529100 chr2D 94.565 92 4 1 142 233 595549133 595549223 9.680000e-30 141.0
10 TraesCS2B01G529100 chr2A 95.666 969 37 4 677 1643 729580531 729581496 0.000000e+00 1552.0
11 TraesCS2B01G529100 chr2A 92.212 321 19 1 1643 1957 729581525 729581845 1.420000e-122 449.0
12 TraesCS2B01G529100 chr2A 88.176 296 21 7 239 525 729580246 729580536 8.890000e-90 340.0
13 TraesCS2B01G529100 chr2A 87.097 93 12 0 2494 2586 113193354 113193262 3.530000e-19 106.0
14 TraesCS2B01G529100 chr5D 82.914 556 67 12 2051 2592 509596757 509597298 2.340000e-130 475.0
15 TraesCS2B01G529100 chr5D 81.729 509 75 13 2048 2545 265351341 265351842 2.400000e-110 409.0
16 TraesCS2B01G529100 chr1B 82.600 500 74 8 2051 2540 153518649 153518153 1.840000e-116 429.0
17 TraesCS2B01G529100 chr5A 83.617 470 59 9 2090 2547 307121477 307121014 2.390000e-115 425.0
18 TraesCS2B01G529100 chr4D 82.415 472 61 16 2051 2505 169299735 169299269 2.420000e-105 392.0
19 TraesCS2B01G529100 chr4D 79.374 543 90 17 2063 2594 342607608 342607077 1.900000e-96 363.0
20 TraesCS2B01G529100 chr1D 81.800 489 65 16 2051 2520 198485527 198486010 3.130000e-104 388.0
21 TraesCS2B01G529100 chr1D 90.184 163 10 2 523 679 427826921 427827083 9.410000e-50 207.0
22 TraesCS2B01G529100 chr4B 91.515 165 8 2 523 681 41528257 41528093 3.360000e-54 222.0
23 TraesCS2B01G529100 chr4B 90.184 163 10 2 523 679 63754002 63753840 9.410000e-50 207.0
24 TraesCS2B01G529100 chr4B 89.222 167 12 2 512 672 643895658 643895824 1.220000e-48 204.0
25 TraesCS2B01G529100 chr1A 91.018 167 8 3 518 678 15539993 15540158 4.350000e-53 219.0
26 TraesCS2B01G529100 chr1A 90.361 166 9 3 523 682 41750216 41750052 7.270000e-51 211.0
27 TraesCS2B01G529100 chr6B 89.017 173 13 2 516 682 699977617 699977445 2.620000e-50 209.0
28 TraesCS2B01G529100 chr3D 90.123 162 10 2 523 678 238999575 238999414 3.380000e-49 206.0
29 TraesCS2B01G529100 chr3D 86.567 67 9 0 2494 2560 118014610 118014676 9.960000e-10 75.0
30 TraesCS2B01G529100 chr7D 83.908 87 14 0 1379 1465 423711356 423711442 1.650000e-12 84.2
31 TraesCS2B01G529100 chr7B 83.908 87 14 0 1379 1465 440815484 440815570 1.650000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G529100 chr2B 723445610 723448203 2593 False 4791.000000 4791 100.0000 1 2594 1 chr2B.!!$F1 2593
1 TraesCS2B01G529100 chr2B 168077298 168077802 504 True 372.000000 372 80.3500 2073 2575 1 chr2B.!!$R1 502
2 TraesCS2B01G529100 chr2D 595556614 595557910 1296 False 1011.500000 1570 94.8705 677 1949 2 chr2D.!!$F5 1272
3 TraesCS2B01G529100 chr2D 265753916 265754464 548 False 477.000000 477 82.6710 2051 2593 1 chr2D.!!$F1 542
4 TraesCS2B01G529100 chr2D 265851821 265852368 547 False 460.000000 460 82.1300 2050 2593 1 chr2D.!!$F2 543
5 TraesCS2B01G529100 chr2A 729580246 729581845 1599 False 780.333333 1552 92.0180 239 1957 3 chr2A.!!$F1 1718
6 TraesCS2B01G529100 chr5D 509596757 509597298 541 False 475.000000 475 82.9140 2051 2592 1 chr5D.!!$F2 541
7 TraesCS2B01G529100 chr5D 265351341 265351842 501 False 409.000000 409 81.7290 2048 2545 1 chr5D.!!$F1 497
8 TraesCS2B01G529100 chr4D 342607077 342607608 531 True 363.000000 363 79.3740 2063 2594 1 chr4D.!!$R2 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 440 0.179004 ACGCCCTCCAAACATCAACA 60.179 50.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 2104 0.040646 TTCCGGTCTCCCTAAGCTGA 59.959 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.590575 CCGTTGCAGGGTGTCGTT 60.591 61.111 0.00 0.00 0.00 3.85
27 28 2.184167 CCGTTGCAGGGTGTCGTTT 61.184 57.895 0.00 0.00 0.00 3.60
28 29 1.278637 CGTTGCAGGGTGTCGTTTC 59.721 57.895 0.00 0.00 0.00 2.78
29 30 1.433053 CGTTGCAGGGTGTCGTTTCA 61.433 55.000 0.00 0.00 0.00 2.69
30 31 0.307760 GTTGCAGGGTGTCGTTTCAG 59.692 55.000 0.00 0.00 0.00 3.02
31 32 1.444119 TTGCAGGGTGTCGTTTCAGC 61.444 55.000 0.00 0.00 35.43 4.26
35 36 4.771127 GGTGTCGTTTCAGCCTGA 57.229 55.556 0.00 0.00 0.00 3.86
36 37 2.533318 GGTGTCGTTTCAGCCTGAG 58.467 57.895 0.00 0.00 0.00 3.35
37 38 1.569479 GGTGTCGTTTCAGCCTGAGC 61.569 60.000 0.00 0.00 40.32 4.26
47 48 3.123620 GCCTGAGCTTCAGTGCCG 61.124 66.667 10.86 0.02 42.80 5.69
48 49 3.123620 CCTGAGCTTCAGTGCCGC 61.124 66.667 10.86 0.00 42.80 6.53
49 50 2.047465 CTGAGCTTCAGTGCCGCT 60.047 61.111 5.79 5.79 39.58 5.52
50 51 2.357881 TGAGCTTCAGTGCCGCTG 60.358 61.111 10.19 0.00 46.34 5.18
51 52 3.797546 GAGCTTCAGTGCCGCTGC 61.798 66.667 10.19 0.00 44.66 5.25
52 53 4.326507 AGCTTCAGTGCCGCTGCT 62.327 61.111 0.00 0.00 44.66 4.24
53 54 4.099170 GCTTCAGTGCCGCTGCTG 62.099 66.667 0.00 8.58 44.66 4.41
54 55 2.357881 CTTCAGTGCCGCTGCTGA 60.358 61.111 12.17 12.17 44.66 4.26
55 56 2.666190 TTCAGTGCCGCTGCTGAC 60.666 61.111 14.75 0.00 44.66 3.51
56 57 3.459148 TTCAGTGCCGCTGCTGACA 62.459 57.895 14.75 6.88 44.66 3.58
57 58 2.939133 TTCAGTGCCGCTGCTGACAA 62.939 55.000 14.75 3.00 44.66 3.18
58 59 2.203195 AGTGCCGCTGCTGACAAA 60.203 55.556 0.70 0.00 38.71 2.83
59 60 1.823470 AGTGCCGCTGCTGACAAAA 60.823 52.632 0.70 0.00 38.71 2.44
60 61 1.065600 GTGCCGCTGCTGACAAAAA 59.934 52.632 0.70 0.00 38.71 1.94
61 62 1.065600 TGCCGCTGCTGACAAAAAC 59.934 52.632 0.70 0.00 38.71 2.43
62 63 1.065600 GCCGCTGCTGACAAAAACA 59.934 52.632 0.00 0.00 33.53 2.83
63 64 0.318955 GCCGCTGCTGACAAAAACAT 60.319 50.000 0.00 0.00 33.53 2.71
64 65 1.068610 GCCGCTGCTGACAAAAACATA 60.069 47.619 0.00 0.00 33.53 2.29
65 66 2.855180 CCGCTGCTGACAAAAACATAG 58.145 47.619 0.00 0.00 0.00 2.23
66 67 2.226437 CCGCTGCTGACAAAAACATAGT 59.774 45.455 0.00 0.00 0.00 2.12
67 68 3.228749 CGCTGCTGACAAAAACATAGTG 58.771 45.455 0.00 0.00 0.00 2.74
68 69 3.303990 CGCTGCTGACAAAAACATAGTGT 60.304 43.478 0.00 0.00 0.00 3.55
69 70 4.222114 GCTGCTGACAAAAACATAGTGTC 58.778 43.478 0.00 0.00 41.66 3.67
78 79 8.440021 GACAAAAACATAGTGTCATTGTCATC 57.560 34.615 22.42 8.13 45.28 2.92
79 80 7.370383 ACAAAAACATAGTGTCATTGTCATCC 58.630 34.615 7.30 0.00 35.53 3.51
80 81 7.231317 ACAAAAACATAGTGTCATTGTCATCCT 59.769 33.333 7.30 0.00 35.53 3.24
81 82 7.765695 AAAACATAGTGTCATTGTCATCCTT 57.234 32.000 0.00 0.00 0.00 3.36
82 83 8.862325 AAAACATAGTGTCATTGTCATCCTTA 57.138 30.769 0.00 0.00 0.00 2.69
83 84 8.862325 AAACATAGTGTCATTGTCATCCTTAA 57.138 30.769 0.00 0.00 0.00 1.85
84 85 9.466497 AAACATAGTGTCATTGTCATCCTTAAT 57.534 29.630 0.00 0.00 0.00 1.40
85 86 8.442632 ACATAGTGTCATTGTCATCCTTAATG 57.557 34.615 0.00 0.00 36.65 1.90
86 87 8.267183 ACATAGTGTCATTGTCATCCTTAATGA 58.733 33.333 0.00 0.00 42.21 2.57
87 88 9.281371 CATAGTGTCATTGTCATCCTTAATGAT 57.719 33.333 0.00 0.00 45.94 2.45
89 90 8.899427 AGTGTCATTGTCATCCTTAATGATAG 57.101 34.615 0.00 0.00 45.94 2.08
90 91 8.489489 AGTGTCATTGTCATCCTTAATGATAGT 58.511 33.333 0.00 0.00 45.94 2.12
91 92 8.554528 GTGTCATTGTCATCCTTAATGATAGTG 58.445 37.037 0.00 2.33 45.94 2.74
92 93 7.716560 TGTCATTGTCATCCTTAATGATAGTGG 59.283 37.037 0.00 0.00 45.94 4.00
93 94 7.933577 GTCATTGTCATCCTTAATGATAGTGGA 59.066 37.037 0.00 0.00 45.94 4.02
94 95 8.493607 TCATTGTCATCCTTAATGATAGTGGAA 58.506 33.333 7.19 0.00 45.94 3.53
95 96 9.123902 CATTGTCATCCTTAATGATAGTGGAAA 57.876 33.333 0.00 0.00 45.94 3.13
96 97 9.699410 ATTGTCATCCTTAATGATAGTGGAAAA 57.301 29.630 0.00 0.00 45.94 2.29
97 98 8.737168 TGTCATCCTTAATGATAGTGGAAAAG 57.263 34.615 0.00 0.00 45.94 2.27
98 99 7.283127 TGTCATCCTTAATGATAGTGGAAAAGC 59.717 37.037 0.00 0.00 45.94 3.51
99 100 7.500559 GTCATCCTTAATGATAGTGGAAAAGCT 59.499 37.037 0.00 0.00 45.94 3.74
100 101 8.713971 TCATCCTTAATGATAGTGGAAAAGCTA 58.286 33.333 0.00 0.00 39.52 3.32
101 102 9.512588 CATCCTTAATGATAGTGGAAAAGCTAT 57.487 33.333 0.00 0.00 37.59 2.97
103 104 9.920946 TCCTTAATGATAGTGGAAAAGCTATTT 57.079 29.630 0.00 0.00 0.00 1.40
110 111 9.290988 TGATAGTGGAAAAGCTATTTTGTTACA 57.709 29.630 0.00 0.00 38.74 2.41
111 112 9.774742 GATAGTGGAAAAGCTATTTTGTTACAG 57.225 33.333 0.00 0.00 38.74 2.74
112 113 7.582667 AGTGGAAAAGCTATTTTGTTACAGT 57.417 32.000 0.00 0.00 38.74 3.55
113 114 8.685838 AGTGGAAAAGCTATTTTGTTACAGTA 57.314 30.769 0.00 0.00 38.74 2.74
114 115 9.297037 AGTGGAAAAGCTATTTTGTTACAGTAT 57.703 29.630 0.00 0.00 38.74 2.12
115 116 9.556030 GTGGAAAAGCTATTTTGTTACAGTATC 57.444 33.333 0.00 0.00 38.74 2.24
116 117 9.515226 TGGAAAAGCTATTTTGTTACAGTATCT 57.485 29.630 0.00 0.00 38.74 1.98
140 141 9.745018 TCTTTCTTTGAGTTATTCATTCATCCT 57.255 29.630 0.00 0.00 35.27 3.24
142 143 9.519191 TTTCTTTGAGTTATTCATTCATCCTCA 57.481 29.630 0.00 0.00 35.27 3.86
143 144 9.690913 TTCTTTGAGTTATTCATTCATCCTCAT 57.309 29.630 0.00 0.00 35.27 2.90
144 145 9.334947 TCTTTGAGTTATTCATTCATCCTCATC 57.665 33.333 0.00 0.00 35.27 2.92
145 146 7.719778 TTGAGTTATTCATTCATCCTCATCG 57.280 36.000 0.00 0.00 35.27 3.84
146 147 6.226052 TGAGTTATTCATTCATCCTCATCGG 58.774 40.000 0.00 0.00 0.00 4.18
147 148 4.999950 AGTTATTCATTCATCCTCATCGGC 59.000 41.667 0.00 0.00 0.00 5.54
148 149 3.784511 ATTCATTCATCCTCATCGGCT 57.215 42.857 0.00 0.00 0.00 5.52
149 150 2.538512 TCATTCATCCTCATCGGCTG 57.461 50.000 0.00 0.00 0.00 4.85
150 151 1.764723 TCATTCATCCTCATCGGCTGT 59.235 47.619 0.00 0.00 30.82 4.40
151 152 1.871676 CATTCATCCTCATCGGCTGTG 59.128 52.381 0.00 0.00 30.82 3.66
152 153 1.194218 TTCATCCTCATCGGCTGTGA 58.806 50.000 0.00 0.00 30.82 3.58
153 154 1.194218 TCATCCTCATCGGCTGTGAA 58.806 50.000 0.00 0.00 30.82 3.18
154 155 1.764723 TCATCCTCATCGGCTGTGAAT 59.235 47.619 0.00 0.00 30.82 2.57
155 156 2.171237 TCATCCTCATCGGCTGTGAATT 59.829 45.455 0.00 0.00 30.82 2.17
156 157 2.028420 TCCTCATCGGCTGTGAATTG 57.972 50.000 0.00 0.00 0.00 2.32
157 158 1.278985 TCCTCATCGGCTGTGAATTGT 59.721 47.619 0.00 0.00 0.00 2.71
158 159 1.399440 CCTCATCGGCTGTGAATTGTG 59.601 52.381 0.00 0.00 0.00 3.33
159 160 2.349590 CTCATCGGCTGTGAATTGTGA 58.650 47.619 0.00 0.00 0.00 3.58
160 161 2.941064 CTCATCGGCTGTGAATTGTGAT 59.059 45.455 0.00 0.00 0.00 3.06
161 162 3.346315 TCATCGGCTGTGAATTGTGATT 58.654 40.909 0.00 0.00 0.00 2.57
162 163 3.127376 TCATCGGCTGTGAATTGTGATTG 59.873 43.478 0.00 0.00 0.00 2.67
163 164 2.777094 TCGGCTGTGAATTGTGATTGA 58.223 42.857 0.00 0.00 0.00 2.57
164 165 3.145286 TCGGCTGTGAATTGTGATTGAA 58.855 40.909 0.00 0.00 0.00 2.69
165 166 3.058293 TCGGCTGTGAATTGTGATTGAAC 60.058 43.478 0.00 0.00 0.00 3.18
166 167 3.058016 CGGCTGTGAATTGTGATTGAACT 60.058 43.478 0.00 0.00 0.00 3.01
167 168 4.479619 GGCTGTGAATTGTGATTGAACTC 58.520 43.478 0.00 0.00 0.00 3.01
168 169 4.153986 GCTGTGAATTGTGATTGAACTCG 58.846 43.478 0.00 0.00 0.00 4.18
169 170 4.319766 GCTGTGAATTGTGATTGAACTCGT 60.320 41.667 0.00 0.00 0.00 4.18
170 171 5.342806 TGTGAATTGTGATTGAACTCGTC 57.657 39.130 0.00 0.00 0.00 4.20
171 172 5.056480 TGTGAATTGTGATTGAACTCGTCT 58.944 37.500 0.00 0.00 0.00 4.18
172 173 6.220201 TGTGAATTGTGATTGAACTCGTCTA 58.780 36.000 0.00 0.00 0.00 2.59
173 174 6.873605 TGTGAATTGTGATTGAACTCGTCTAT 59.126 34.615 0.00 0.00 0.00 1.98
174 175 7.387673 TGTGAATTGTGATTGAACTCGTCTATT 59.612 33.333 0.00 0.00 0.00 1.73
175 176 8.230486 GTGAATTGTGATTGAACTCGTCTATTT 58.770 33.333 0.00 0.00 0.00 1.40
176 177 8.783093 TGAATTGTGATTGAACTCGTCTATTTT 58.217 29.630 0.00 0.00 0.00 1.82
177 178 8.955061 AATTGTGATTGAACTCGTCTATTTTG 57.045 30.769 0.00 0.00 0.00 2.44
178 179 7.722795 TTGTGATTGAACTCGTCTATTTTGA 57.277 32.000 0.00 0.00 0.00 2.69
179 180 7.351414 TGTGATTGAACTCGTCTATTTTGAG 57.649 36.000 0.00 0.00 35.85 3.02
180 181 6.929049 TGTGATTGAACTCGTCTATTTTGAGT 59.071 34.615 0.00 0.00 44.46 3.41
190 191 8.873830 ACTCGTCTATTTTGAGTTGTATGATTG 58.126 33.333 0.00 0.00 39.87 2.67
191 192 8.196802 TCGTCTATTTTGAGTTGTATGATTGG 57.803 34.615 0.00 0.00 0.00 3.16
192 193 7.279981 TCGTCTATTTTGAGTTGTATGATTGGG 59.720 37.037 0.00 0.00 0.00 4.12
193 194 7.279981 CGTCTATTTTGAGTTGTATGATTGGGA 59.720 37.037 0.00 0.00 0.00 4.37
194 195 9.125026 GTCTATTTTGAGTTGTATGATTGGGAT 57.875 33.333 0.00 0.00 0.00 3.85
198 199 8.877864 TTTTGAGTTGTATGATTGGGATAAGT 57.122 30.769 0.00 0.00 0.00 2.24
199 200 8.877864 TTTGAGTTGTATGATTGGGATAAGTT 57.122 30.769 0.00 0.00 0.00 2.66
200 201 8.877864 TTGAGTTGTATGATTGGGATAAGTTT 57.122 30.769 0.00 0.00 0.00 2.66
201 202 8.877864 TGAGTTGTATGATTGGGATAAGTTTT 57.122 30.769 0.00 0.00 0.00 2.43
202 203 9.308000 TGAGTTGTATGATTGGGATAAGTTTTT 57.692 29.630 0.00 0.00 0.00 1.94
203 204 9.788960 GAGTTGTATGATTGGGATAAGTTTTTC 57.211 33.333 0.00 0.00 0.00 2.29
204 205 9.533831 AGTTGTATGATTGGGATAAGTTTTTCT 57.466 29.630 0.00 0.00 0.00 2.52
205 206 9.573133 GTTGTATGATTGGGATAAGTTTTTCTG 57.427 33.333 0.00 0.00 0.00 3.02
206 207 8.877864 TGTATGATTGGGATAAGTTTTTCTGT 57.122 30.769 0.00 0.00 0.00 3.41
207 208 8.739039 TGTATGATTGGGATAAGTTTTTCTGTG 58.261 33.333 0.00 0.00 0.00 3.66
208 209 7.781324 ATGATTGGGATAAGTTTTTCTGTGT 57.219 32.000 0.00 0.00 0.00 3.72
209 210 6.980593 TGATTGGGATAAGTTTTTCTGTGTG 58.019 36.000 0.00 0.00 0.00 3.82
210 211 5.782893 TTGGGATAAGTTTTTCTGTGTGG 57.217 39.130 0.00 0.00 0.00 4.17
211 212 4.798882 TGGGATAAGTTTTTCTGTGTGGT 58.201 39.130 0.00 0.00 0.00 4.16
212 213 5.942961 TGGGATAAGTTTTTCTGTGTGGTA 58.057 37.500 0.00 0.00 0.00 3.25
213 214 6.548321 TGGGATAAGTTTTTCTGTGTGGTAT 58.452 36.000 0.00 0.00 0.00 2.73
214 215 7.691213 TGGGATAAGTTTTTCTGTGTGGTATA 58.309 34.615 0.00 0.00 0.00 1.47
215 216 7.608761 TGGGATAAGTTTTTCTGTGTGGTATAC 59.391 37.037 0.00 0.00 0.00 1.47
216 217 7.201582 GGGATAAGTTTTTCTGTGTGGTATACG 60.202 40.741 0.00 0.00 0.00 3.06
217 218 5.934935 AAGTTTTTCTGTGTGGTATACGG 57.065 39.130 0.00 0.00 0.00 4.02
218 219 4.964593 AGTTTTTCTGTGTGGTATACGGT 58.035 39.130 0.00 0.00 0.00 4.83
219 220 6.100404 AGTTTTTCTGTGTGGTATACGGTA 57.900 37.500 0.00 0.00 0.00 4.02
220 221 6.161381 AGTTTTTCTGTGTGGTATACGGTAG 58.839 40.000 0.00 0.00 0.00 3.18
221 222 5.726980 TTTTCTGTGTGGTATACGGTAGT 57.273 39.130 0.00 0.00 0.00 2.73
222 223 4.707030 TTCTGTGTGGTATACGGTAGTG 57.293 45.455 0.00 0.00 0.00 2.74
223 224 2.424601 TCTGTGTGGTATACGGTAGTGC 59.575 50.000 0.00 0.00 0.00 4.40
224 225 1.477700 TGTGTGGTATACGGTAGTGCC 59.522 52.381 0.00 0.00 0.00 5.01
225 226 1.477700 GTGTGGTATACGGTAGTGCCA 59.522 52.381 0.00 0.00 36.97 4.92
226 227 1.477700 TGTGGTATACGGTAGTGCCAC 59.522 52.381 21.45 21.45 43.05 5.01
227 228 1.753073 GTGGTATACGGTAGTGCCACT 59.247 52.381 21.18 1.54 41.37 4.00
228 229 2.167075 GTGGTATACGGTAGTGCCACTT 59.833 50.000 21.18 0.00 41.37 3.16
229 230 2.166870 TGGTATACGGTAGTGCCACTTG 59.833 50.000 1.02 0.00 36.97 3.16
230 231 2.482490 GGTATACGGTAGTGCCACTTGG 60.482 54.545 1.02 0.00 36.97 3.61
231 232 1.272807 ATACGGTAGTGCCACTTGGT 58.727 50.000 1.02 1.44 36.97 3.67
232 233 0.604578 TACGGTAGTGCCACTTGGTC 59.395 55.000 1.02 0.00 36.97 4.02
233 234 1.736645 CGGTAGTGCCACTTGGTCG 60.737 63.158 1.02 0.00 36.97 4.79
234 235 2.033194 GGTAGTGCCACTTGGTCGC 61.033 63.158 1.02 0.00 37.57 5.19
235 236 1.301401 GTAGTGCCACTTGGTCGCA 60.301 57.895 1.02 0.00 37.57 5.10
236 237 0.673644 GTAGTGCCACTTGGTCGCAT 60.674 55.000 1.02 0.00 37.57 4.73
237 238 0.391130 TAGTGCCACTTGGTCGCATC 60.391 55.000 1.02 0.00 37.57 3.91
241 242 0.745845 GCCACTTGGTCGCATCATCT 60.746 55.000 0.00 0.00 37.57 2.90
254 255 2.677836 GCATCATCTCGGCAAACTTACA 59.322 45.455 0.00 0.00 0.00 2.41
256 257 4.201950 GCATCATCTCGGCAAACTTACATT 60.202 41.667 0.00 0.00 0.00 2.71
257 258 5.007626 GCATCATCTCGGCAAACTTACATTA 59.992 40.000 0.00 0.00 0.00 1.90
259 260 6.662414 TCATCTCGGCAAACTTACATTAAG 57.338 37.500 0.00 0.00 41.51 1.85
260 261 6.403049 TCATCTCGGCAAACTTACATTAAGA 58.597 36.000 0.00 0.00 39.09 2.10
299 304 9.000486 AGAGCAGTTACTAAAAATTAACCTGAC 58.000 33.333 0.00 0.00 0.00 3.51
340 345 6.841781 ATTTTTAAGCCCTAGATACCTCCA 57.158 37.500 0.00 0.00 0.00 3.86
349 354 4.160329 CCTAGATACCTCCATTGCACCTA 58.840 47.826 0.00 0.00 0.00 3.08
354 359 3.737559 ACCTCCATTGCACCTATGAAA 57.262 42.857 0.00 0.00 0.00 2.69
360 365 5.575157 TCCATTGCACCTATGAAAACCTTA 58.425 37.500 0.00 0.00 0.00 2.69
361 366 6.013379 TCCATTGCACCTATGAAAACCTTAA 58.987 36.000 0.00 0.00 0.00 1.85
373 378 4.339814 TGAAAACCTTAATGCCGTTTCACT 59.660 37.500 0.00 0.00 0.00 3.41
376 381 3.751518 ACCTTAATGCCGTTTCACTTCT 58.248 40.909 0.00 0.00 0.00 2.85
431 438 0.953471 CGACGCCCTCCAAACATCAA 60.953 55.000 0.00 0.00 0.00 2.57
433 440 0.179004 ACGCCCTCCAAACATCAACA 60.179 50.000 0.00 0.00 0.00 3.33
434 441 0.523072 CGCCCTCCAAACATCAACAG 59.477 55.000 0.00 0.00 0.00 3.16
456 465 1.070038 GCACATTCAATGCCAAACGG 58.930 50.000 0.00 0.00 37.08 4.44
459 468 1.068610 ACATTCAATGCCAAACGGACG 60.069 47.619 0.00 0.00 0.00 4.79
460 469 1.198867 CATTCAATGCCAAACGGACGA 59.801 47.619 0.00 0.00 0.00 4.20
461 470 1.529226 TTCAATGCCAAACGGACGAT 58.471 45.000 0.00 0.00 0.00 3.73
462 471 2.388310 TCAATGCCAAACGGACGATA 57.612 45.000 0.00 0.00 0.00 2.92
463 472 2.004017 TCAATGCCAAACGGACGATAC 58.996 47.619 0.00 0.00 0.00 2.24
464 473 2.006888 CAATGCCAAACGGACGATACT 58.993 47.619 0.00 0.00 0.00 2.12
465 474 1.651987 ATGCCAAACGGACGATACTG 58.348 50.000 0.00 0.00 0.00 2.74
467 476 1.702491 GCCAAACGGACGATACTGCC 61.702 60.000 0.00 0.00 0.00 4.85
468 477 1.087771 CCAAACGGACGATACTGCCC 61.088 60.000 0.00 0.00 0.00 5.36
469 478 1.153706 AAACGGACGATACTGCCCG 60.154 57.895 0.00 0.00 46.65 6.13
474 483 4.904466 ACGATACTGCCCGTCAAC 57.096 55.556 0.00 0.00 33.23 3.18
475 484 1.153901 ACGATACTGCCCGTCAACG 60.154 57.895 0.00 0.00 33.23 4.10
494 503 2.987149 ACGCTGTTTCGTTACATCTCTG 59.013 45.455 0.00 0.00 40.07 3.35
520 529 6.923508 TCAGTTGATTCGCTCGTCATTATTAT 59.076 34.615 0.00 0.00 0.00 1.28
521 530 8.079809 TCAGTTGATTCGCTCGTCATTATTATA 58.920 33.333 0.00 0.00 0.00 0.98
522 531 8.864024 CAGTTGATTCGCTCGTCATTATTATAT 58.136 33.333 0.00 0.00 0.00 0.86
526 535 9.717892 TGATTCGCTCGTCATTATTATATACTC 57.282 33.333 0.00 0.00 0.00 2.59
527 536 9.171701 GATTCGCTCGTCATTATTATATACTCC 57.828 37.037 0.00 0.00 0.00 3.85
528 537 7.619964 TCGCTCGTCATTATTATATACTCCA 57.380 36.000 0.00 0.00 0.00 3.86
529 538 8.221965 TCGCTCGTCATTATTATATACTCCAT 57.778 34.615 0.00 0.00 0.00 3.41
530 539 8.343366 TCGCTCGTCATTATTATATACTCCATC 58.657 37.037 0.00 0.00 0.00 3.51
531 540 7.591795 CGCTCGTCATTATTATATACTCCATCC 59.408 40.741 0.00 0.00 0.00 3.51
532 541 8.414003 GCTCGTCATTATTATATACTCCATCCA 58.586 37.037 0.00 0.00 0.00 3.41
549 558 9.398921 ACTCCATCCATTCCTAAATATAAGTCT 57.601 33.333 0.00 0.00 0.00 3.24
577 586 8.721019 ATAGAACTATAGACTACATACGGAGC 57.279 38.462 6.78 0.00 0.00 4.70
578 587 6.531923 AGAACTATAGACTACATACGGAGCA 58.468 40.000 6.78 0.00 0.00 4.26
579 588 6.427547 AGAACTATAGACTACATACGGAGCAC 59.572 42.308 6.78 0.00 0.00 4.40
580 589 5.618236 ACTATAGACTACATACGGAGCACA 58.382 41.667 6.78 0.00 0.00 4.57
581 590 6.060136 ACTATAGACTACATACGGAGCACAA 58.940 40.000 6.78 0.00 0.00 3.33
582 591 3.505464 AGACTACATACGGAGCACAAC 57.495 47.619 0.00 0.00 0.00 3.32
583 592 2.159421 AGACTACATACGGAGCACAACG 60.159 50.000 0.00 0.00 0.00 4.10
584 593 1.814394 ACTACATACGGAGCACAACGA 59.186 47.619 0.00 0.00 0.00 3.85
585 594 2.159421 ACTACATACGGAGCACAACGAG 60.159 50.000 0.00 0.00 0.00 4.18
586 595 0.601558 ACATACGGAGCACAACGAGT 59.398 50.000 0.00 0.00 0.00 4.18
587 596 1.814394 ACATACGGAGCACAACGAGTA 59.186 47.619 0.00 0.00 0.00 2.59
588 597 2.229543 ACATACGGAGCACAACGAGTAA 59.770 45.455 0.00 0.00 0.00 2.24
589 598 3.247442 CATACGGAGCACAACGAGTAAA 58.753 45.455 0.00 0.00 0.00 2.01
590 599 2.450609 ACGGAGCACAACGAGTAAAT 57.549 45.000 0.00 0.00 0.00 1.40
591 600 2.334838 ACGGAGCACAACGAGTAAATC 58.665 47.619 0.00 0.00 0.00 2.17
592 601 2.029290 ACGGAGCACAACGAGTAAATCT 60.029 45.455 0.00 0.00 0.00 2.40
593 602 3.192001 ACGGAGCACAACGAGTAAATCTA 59.808 43.478 0.00 0.00 0.00 1.98
594 603 3.546670 CGGAGCACAACGAGTAAATCTAC 59.453 47.826 0.00 0.00 0.00 2.59
595 604 4.491676 GGAGCACAACGAGTAAATCTACA 58.508 43.478 0.00 0.00 0.00 2.74
596 605 4.326548 GGAGCACAACGAGTAAATCTACAC 59.673 45.833 0.00 0.00 0.00 2.90
597 606 5.135508 AGCACAACGAGTAAATCTACACT 57.864 39.130 0.00 0.00 0.00 3.55
598 607 5.162075 AGCACAACGAGTAAATCTACACTC 58.838 41.667 0.00 0.00 38.24 3.51
599 608 5.047943 AGCACAACGAGTAAATCTACACTCT 60.048 40.000 0.00 0.00 39.23 3.24
600 609 6.150641 AGCACAACGAGTAAATCTACACTCTA 59.849 38.462 0.00 0.00 39.23 2.43
601 610 6.805271 GCACAACGAGTAAATCTACACTCTAA 59.195 38.462 0.00 0.00 39.23 2.10
602 611 7.327761 GCACAACGAGTAAATCTACACTCTAAA 59.672 37.037 0.00 0.00 39.23 1.85
603 612 9.188588 CACAACGAGTAAATCTACACTCTAAAA 57.811 33.333 0.00 0.00 39.23 1.52
604 613 9.924650 ACAACGAGTAAATCTACACTCTAAAAT 57.075 29.630 0.00 0.00 39.23 1.82
606 615 8.408743 ACGAGTAAATCTACACTCTAAAATGC 57.591 34.615 0.00 0.00 39.23 3.56
607 616 8.033038 ACGAGTAAATCTACACTCTAAAATGCA 58.967 33.333 0.00 0.00 39.23 3.96
608 617 9.035607 CGAGTAAATCTACACTCTAAAATGCAT 57.964 33.333 0.00 0.00 39.23 3.96
613 622 9.890629 AAATCTACACTCTAAAATGCATCTACA 57.109 29.630 0.00 0.00 0.00 2.74
616 625 9.967346 TCTACACTCTAAAATGCATCTACATAC 57.033 33.333 0.00 0.00 0.00 2.39
617 626 9.750125 CTACACTCTAAAATGCATCTACATACA 57.250 33.333 0.00 0.00 0.00 2.29
619 628 9.265901 ACACTCTAAAATGCATCTACATACATC 57.734 33.333 0.00 0.00 0.00 3.06
620 629 8.715998 CACTCTAAAATGCATCTACATACATCC 58.284 37.037 0.00 0.00 0.00 3.51
621 630 7.600375 ACTCTAAAATGCATCTACATACATCCG 59.400 37.037 0.00 0.00 0.00 4.18
622 631 7.441836 TCTAAAATGCATCTACATACATCCGT 58.558 34.615 0.00 0.00 0.00 4.69
623 632 8.581578 TCTAAAATGCATCTACATACATCCGTA 58.418 33.333 0.00 0.00 0.00 4.02
624 633 9.371136 CTAAAATGCATCTACATACATCCGTAT 57.629 33.333 0.00 0.00 38.96 3.06
635 644 6.951256 CATACATCCGTATGTGGTTCATAG 57.049 41.667 3.56 0.00 46.70 2.23
636 645 6.455647 CATACATCCGTATGTGGTTCATAGT 58.544 40.000 3.56 0.00 46.70 2.12
637 646 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
638 647 4.404394 ACATCCGTATGTGGTTCATAGTGA 59.596 41.667 0.00 0.00 44.79 3.41
639 648 5.105106 ACATCCGTATGTGGTTCATAGTGAA 60.105 40.000 0.00 0.00 44.79 3.18
640 649 5.408880 TCCGTATGTGGTTCATAGTGAAA 57.591 39.130 0.00 0.00 38.22 2.69
641 650 5.984725 TCCGTATGTGGTTCATAGTGAAAT 58.015 37.500 0.00 0.00 38.22 2.17
642 651 6.046593 TCCGTATGTGGTTCATAGTGAAATC 58.953 40.000 0.00 0.00 38.22 2.17
643 652 6.049149 CCGTATGTGGTTCATAGTGAAATCT 58.951 40.000 0.00 0.00 38.22 2.40
644 653 6.201044 CCGTATGTGGTTCATAGTGAAATCTC 59.799 42.308 0.00 0.00 38.22 2.75
645 654 6.980978 CGTATGTGGTTCATAGTGAAATCTCT 59.019 38.462 0.00 0.00 38.22 3.10
646 655 8.135529 CGTATGTGGTTCATAGTGAAATCTCTA 58.864 37.037 0.00 0.00 38.22 2.43
647 656 9.250624 GTATGTGGTTCATAGTGAAATCTCTAC 57.749 37.037 0.00 0.00 38.22 2.59
648 657 7.239763 TGTGGTTCATAGTGAAATCTCTACA 57.760 36.000 0.00 0.00 38.22 2.74
649 658 7.676004 TGTGGTTCATAGTGAAATCTCTACAA 58.324 34.615 0.00 0.00 38.22 2.41
650 659 8.154203 TGTGGTTCATAGTGAAATCTCTACAAA 58.846 33.333 0.00 0.00 38.22 2.83
651 660 8.999431 GTGGTTCATAGTGAAATCTCTACAAAA 58.001 33.333 0.00 0.00 38.22 2.44
652 661 9.567776 TGGTTCATAGTGAAATCTCTACAAAAA 57.432 29.630 0.00 0.00 38.22 1.94
653 662 9.827411 GGTTCATAGTGAAATCTCTACAAAAAC 57.173 33.333 0.00 0.00 38.22 2.43
672 681 9.729281 ACAAAAACTTATATTTAGGAACGGAGA 57.271 29.630 0.00 0.00 0.00 3.71
675 684 9.819267 AAAACTTATATTTAGGAACGGAGAGAG 57.181 33.333 0.00 0.00 0.00 3.20
686 695 5.046014 AGGAACGGAGAGAGTAGTACAGTTA 60.046 44.000 2.52 0.00 0.00 2.24
697 706 4.752101 AGTAGTACAGTTACTCGACGTTGT 59.248 41.667 1.96 0.00 39.43 3.32
708 717 3.243301 ACTCGACGTTGTAGTGTCACATT 60.243 43.478 5.62 0.00 34.78 2.71
769 778 3.602483 TGGGAAAATTAGCGTGGTAGAC 58.398 45.455 0.00 0.00 0.00 2.59
800 810 4.414852 GACCATTTGATCACACCATTTCG 58.585 43.478 0.00 0.00 0.00 3.46
803 813 3.557577 TTTGATCACACCATTTCGCAG 57.442 42.857 0.00 0.00 0.00 5.18
1005 1015 2.293399 CCATGACCGACACGAGATGATA 59.707 50.000 0.00 0.00 0.00 2.15
1266 1276 2.344203 CCTGAGCCTCTCGGTCGTT 61.344 63.158 0.00 0.00 42.19 3.85
1488 1498 4.373116 GTCGGCAAGGAGGACGCA 62.373 66.667 0.00 0.00 39.74 5.24
1575 1585 1.953138 GGCGGAGATGCAGATCGTG 60.953 63.158 0.00 0.00 36.28 4.35
1618 1628 4.162690 AGGGAGCGGCATTCGACC 62.163 66.667 1.45 0.00 42.43 4.79
1806 1845 4.549680 CGTCATTCGTTCATGATCTTGCTC 60.550 45.833 0.00 0.00 35.60 4.26
1808 1847 3.333029 TTCGTTCATGATCTTGCTCCA 57.667 42.857 0.00 0.00 0.00 3.86
1903 1948 2.988493 TCACCGTTCGTATGTAAAGTGC 59.012 45.455 0.00 0.00 0.00 4.40
1957 2002 2.073816 CACGTGACATACAAGAACCCC 58.926 52.381 10.90 0.00 0.00 4.95
1958 2003 1.975680 ACGTGACATACAAGAACCCCT 59.024 47.619 0.00 0.00 0.00 4.79
1959 2004 2.289444 ACGTGACATACAAGAACCCCTG 60.289 50.000 0.00 0.00 0.00 4.45
1960 2005 2.028476 CGTGACATACAAGAACCCCTGA 60.028 50.000 0.00 0.00 0.00 3.86
1961 2006 3.556213 CGTGACATACAAGAACCCCTGAA 60.556 47.826 0.00 0.00 0.00 3.02
1962 2007 4.394729 GTGACATACAAGAACCCCTGAAA 58.605 43.478 0.00 0.00 0.00 2.69
1963 2008 4.825085 GTGACATACAAGAACCCCTGAAAA 59.175 41.667 0.00 0.00 0.00 2.29
1964 2009 5.476945 GTGACATACAAGAACCCCTGAAAAT 59.523 40.000 0.00 0.00 0.00 1.82
1965 2010 5.710099 TGACATACAAGAACCCCTGAAAATC 59.290 40.000 0.00 0.00 0.00 2.17
1966 2011 5.892348 ACATACAAGAACCCCTGAAAATCT 58.108 37.500 0.00 0.00 0.00 2.40
1967 2012 5.946377 ACATACAAGAACCCCTGAAAATCTC 59.054 40.000 0.00 0.00 0.00 2.75
1968 2013 3.767711 ACAAGAACCCCTGAAAATCTCC 58.232 45.455 0.00 0.00 0.00 3.71
1969 2014 3.140144 ACAAGAACCCCTGAAAATCTCCA 59.860 43.478 0.00 0.00 0.00 3.86
1970 2015 3.441500 AGAACCCCTGAAAATCTCCAC 57.558 47.619 0.00 0.00 0.00 4.02
1971 2016 2.084546 GAACCCCTGAAAATCTCCACG 58.915 52.381 0.00 0.00 0.00 4.94
1972 2017 1.064825 ACCCCTGAAAATCTCCACGT 58.935 50.000 0.00 0.00 0.00 4.49
1973 2018 2.262637 ACCCCTGAAAATCTCCACGTA 58.737 47.619 0.00 0.00 0.00 3.57
1974 2019 2.236395 ACCCCTGAAAATCTCCACGTAG 59.764 50.000 0.00 0.00 0.00 3.51
1975 2020 2.420129 CCCCTGAAAATCTCCACGTAGG 60.420 54.545 0.00 0.00 39.47 3.18
1976 2021 2.236395 CCCTGAAAATCTCCACGTAGGT 59.764 50.000 0.00 0.00 39.02 3.08
1977 2022 3.307480 CCCTGAAAATCTCCACGTAGGTT 60.307 47.826 0.00 0.00 39.02 3.50
1978 2023 4.081309 CCCTGAAAATCTCCACGTAGGTTA 60.081 45.833 0.00 0.00 39.02 2.85
1979 2024 5.109903 CCTGAAAATCTCCACGTAGGTTAG 58.890 45.833 0.00 0.00 39.02 2.34
1980 2025 5.337330 CCTGAAAATCTCCACGTAGGTTAGT 60.337 44.000 0.00 0.00 39.02 2.24
1981 2026 6.127535 CCTGAAAATCTCCACGTAGGTTAGTA 60.128 42.308 0.00 0.00 39.02 1.82
1982 2027 7.230849 TGAAAATCTCCACGTAGGTTAGTAA 57.769 36.000 0.00 0.00 39.02 2.24
1983 2028 7.092716 TGAAAATCTCCACGTAGGTTAGTAAC 58.907 38.462 4.32 4.32 39.02 2.50
1984 2029 6.594788 AAATCTCCACGTAGGTTAGTAACA 57.405 37.500 14.81 0.00 39.02 2.41
1985 2030 6.594788 AATCTCCACGTAGGTTAGTAACAA 57.405 37.500 14.81 0.00 39.02 2.83
1986 2031 6.786967 ATCTCCACGTAGGTTAGTAACAAT 57.213 37.500 14.81 5.44 39.02 2.71
1987 2032 7.886629 ATCTCCACGTAGGTTAGTAACAATA 57.113 36.000 14.81 4.51 39.02 1.90
1988 2033 7.325660 TCTCCACGTAGGTTAGTAACAATAG 57.674 40.000 14.81 5.95 39.02 1.73
1989 2034 5.894807 TCCACGTAGGTTAGTAACAATAGC 58.105 41.667 14.81 0.00 39.02 2.97
1990 2035 5.653769 TCCACGTAGGTTAGTAACAATAGCT 59.346 40.000 14.81 4.92 39.02 3.32
1991 2036 5.975939 CCACGTAGGTTAGTAACAATAGCTC 59.024 44.000 14.81 0.00 0.00 4.09
1992 2037 5.680229 CACGTAGGTTAGTAACAATAGCTCG 59.320 44.000 14.81 10.51 0.00 5.03
1993 2038 5.355350 ACGTAGGTTAGTAACAATAGCTCGT 59.645 40.000 14.81 11.02 0.00 4.18
1994 2039 5.680229 CGTAGGTTAGTAACAATAGCTCGTG 59.320 44.000 14.81 0.00 0.00 4.35
1995 2040 4.430908 AGGTTAGTAACAATAGCTCGTGC 58.569 43.478 14.81 0.07 40.05 5.34
1996 2041 4.081862 AGGTTAGTAACAATAGCTCGTGCA 60.082 41.667 14.81 0.00 42.74 4.57
1997 2042 4.628333 GGTTAGTAACAATAGCTCGTGCAA 59.372 41.667 14.81 0.00 42.74 4.08
1998 2043 5.121142 GGTTAGTAACAATAGCTCGTGCAAA 59.879 40.000 14.81 0.00 42.74 3.68
1999 2044 6.183360 GGTTAGTAACAATAGCTCGTGCAAAT 60.183 38.462 14.81 1.93 42.74 2.32
2000 2045 7.010738 GGTTAGTAACAATAGCTCGTGCAAATA 59.989 37.037 14.81 0.00 42.74 1.40
2001 2046 6.978343 AGTAACAATAGCTCGTGCAAATAA 57.022 33.333 12.58 0.00 42.74 1.40
2002 2047 7.372451 AGTAACAATAGCTCGTGCAAATAAA 57.628 32.000 12.58 0.00 42.74 1.40
2003 2048 7.464358 AGTAACAATAGCTCGTGCAAATAAAG 58.536 34.615 12.58 2.33 42.74 1.85
2004 2049 6.494893 AACAATAGCTCGTGCAAATAAAGA 57.505 33.333 12.58 0.00 42.74 2.52
2005 2050 6.111768 ACAATAGCTCGTGCAAATAAAGAG 57.888 37.500 12.58 0.00 42.74 2.85
2011 2056 5.530519 CTCGTGCAAATAAAGAGCTTACA 57.469 39.130 0.00 0.00 0.00 2.41
2012 2057 5.927030 CTCGTGCAAATAAAGAGCTTACAA 58.073 37.500 0.00 0.00 0.00 2.41
2013 2058 6.307031 TCGTGCAAATAAAGAGCTTACAAA 57.693 33.333 0.00 0.00 0.00 2.83
2014 2059 6.730175 TCGTGCAAATAAAGAGCTTACAAAA 58.270 32.000 0.00 0.00 0.00 2.44
2015 2060 7.197017 TCGTGCAAATAAAGAGCTTACAAAAA 58.803 30.769 0.00 0.00 0.00 1.94
2016 2061 7.865385 TCGTGCAAATAAAGAGCTTACAAAAAT 59.135 29.630 0.00 0.00 0.00 1.82
2017 2062 8.155923 CGTGCAAATAAAGAGCTTACAAAAATC 58.844 33.333 0.00 0.00 0.00 2.17
2018 2063 8.977505 GTGCAAATAAAGAGCTTACAAAAATCA 58.022 29.630 0.00 0.00 0.00 2.57
2019 2064 9.195411 TGCAAATAAAGAGCTTACAAAAATCAG 57.805 29.630 0.00 0.00 0.00 2.90
2020 2065 9.410556 GCAAATAAAGAGCTTACAAAAATCAGA 57.589 29.630 0.00 0.00 0.00 3.27
2026 2071 9.822185 AAAGAGCTTACAAAAATCAGATTTGTT 57.178 25.926 9.24 3.84 45.97 2.83
2028 2073 9.899226 AGAGCTTACAAAAATCAGATTTGTTAC 57.101 29.630 9.24 0.15 45.97 2.50
2029 2074 9.129209 GAGCTTACAAAAATCAGATTTGTTACC 57.871 33.333 9.24 0.00 45.97 2.85
2030 2075 8.860088 AGCTTACAAAAATCAGATTTGTTACCT 58.140 29.630 9.24 0.99 45.97 3.08
2031 2076 9.129209 GCTTACAAAAATCAGATTTGTTACCTC 57.871 33.333 9.24 0.00 45.97 3.85
2038 2083 9.860898 AAAATCAGATTTGTTACCTCTAAATGC 57.139 29.630 9.24 0.00 31.77 3.56
2039 2084 8.814038 AATCAGATTTGTTACCTCTAAATGCT 57.186 30.769 0.00 0.00 0.00 3.79
2040 2085 9.905713 AATCAGATTTGTTACCTCTAAATGCTA 57.094 29.630 0.00 0.00 0.00 3.49
2041 2086 9.905713 ATCAGATTTGTTACCTCTAAATGCTAA 57.094 29.630 0.00 0.00 0.00 3.09
2042 2087 9.733556 TCAGATTTGTTACCTCTAAATGCTAAA 57.266 29.630 0.00 0.00 0.00 1.85
2043 2088 9.994432 CAGATTTGTTACCTCTAAATGCTAAAG 57.006 33.333 0.00 0.00 0.00 1.85
2044 2089 8.678199 AGATTTGTTACCTCTAAATGCTAAAGC 58.322 33.333 0.00 0.00 42.50 3.51
2045 2090 7.996098 TTTGTTACCTCTAAATGCTAAAGCT 57.004 32.000 3.26 0.00 42.66 3.74
2046 2091 9.681062 ATTTGTTACCTCTAAATGCTAAAGCTA 57.319 29.630 3.26 0.00 42.66 3.32
2047 2092 9.509956 TTTGTTACCTCTAAATGCTAAAGCTAA 57.490 29.630 3.26 0.00 42.66 3.09
2048 2093 8.718102 TGTTACCTCTAAATGCTAAAGCTAAG 57.282 34.615 3.26 0.00 42.66 2.18
2049 2094 7.280205 TGTTACCTCTAAATGCTAAAGCTAAGC 59.720 37.037 12.86 12.86 42.66 3.09
2056 2101 0.375106 GCTAAAGCTAAGCTGTGGCG 59.625 55.000 12.56 0.00 40.30 5.69
2059 2104 2.754664 AAAGCTAAGCTGTGGCGCCT 62.755 55.000 29.70 8.67 44.37 5.52
2061 2106 2.265739 CTAAGCTGTGGCGCCTCA 59.734 61.111 29.70 28.75 44.37 3.86
2068 2113 2.512515 GTGGCGCCTCAGCTTAGG 60.513 66.667 29.70 9.78 39.87 2.69
2098 2143 1.202604 ACACCCCGTATTATTCCAGCG 60.203 52.381 0.00 0.00 0.00 5.18
2104 2150 2.545952 CCGTATTATTCCAGCGCAGAGT 60.546 50.000 11.47 5.35 0.00 3.24
2108 2154 2.299993 TATTCCAGCGCAGAGTTCAG 57.700 50.000 11.47 0.00 0.00 3.02
2114 2160 0.394565 AGCGCAGAGTTCAGGTCTTT 59.605 50.000 11.47 0.00 0.00 2.52
2135 2181 1.346395 TGGAATACGACACTGCTTGGT 59.654 47.619 0.00 0.00 0.00 3.67
2198 2245 3.340928 AGGGTTCAAGTATTACAACGGC 58.659 45.455 0.00 0.00 0.00 5.68
2199 2246 3.075884 GGGTTCAAGTATTACAACGGCA 58.924 45.455 0.00 0.00 0.00 5.69
2202 2249 5.529800 GGGTTCAAGTATTACAACGGCATAT 59.470 40.000 0.00 0.00 0.00 1.78
2203 2250 6.293244 GGGTTCAAGTATTACAACGGCATATC 60.293 42.308 0.00 0.00 0.00 1.63
2228 2275 2.874780 GGCGACACTACGTCTGCG 60.875 66.667 0.00 0.00 42.98 5.18
2237 2284 1.538512 ACTACGTCTGCGAAAGTAGCA 59.461 47.619 0.00 0.00 44.04 3.49
2258 2305 4.095483 GCACTATGCTAGCAACAGAACAAT 59.905 41.667 27.46 10.91 40.96 2.71
2261 2308 5.939883 ACTATGCTAGCAACAGAACAATTCA 59.060 36.000 27.46 0.93 0.00 2.57
2275 2322 4.361451 ACAATTCAAAGCAGCGGAATAG 57.639 40.909 9.49 0.00 31.40 1.73
2300 2347 0.884704 AGCAGCGGAACAACAACGAT 60.885 50.000 0.00 0.00 0.00 3.73
2302 2349 1.195900 GCAGCGGAACAACAACGATAA 59.804 47.619 0.00 0.00 0.00 1.75
2312 2359 6.128007 GGAACAACAACGATAATGATGGACTT 60.128 38.462 0.00 0.00 0.00 3.01
2367 2414 1.153549 GCTCGCAAACTCGGGATCT 60.154 57.895 0.00 0.00 29.93 2.75
2459 2506 2.423185 TCACAAACTCACAGCAACCAAG 59.577 45.455 0.00 0.00 0.00 3.61
2461 2508 2.423538 ACAAACTCACAGCAACCAAGAC 59.576 45.455 0.00 0.00 0.00 3.01
2486 2544 5.835113 ACAACATCATGGTATTTACAGGC 57.165 39.130 0.00 0.00 0.00 4.85
2506 2567 6.032094 CAGGCTAAACAATGATGAACATGAC 58.968 40.000 0.00 0.00 39.39 3.06
2509 2570 6.349611 GGCTAAACAATGATGAACATGACACT 60.350 38.462 0.00 0.00 39.39 3.55
2540 2601 0.534427 ACGAGATGAGCATGGCATGG 60.534 55.000 27.48 11.48 0.00 3.66
2551 2612 4.733165 AGCATGGCATGGACATATTACTT 58.267 39.130 27.48 0.00 25.85 2.24
2553 2614 6.306199 AGCATGGCATGGACATATTACTTAA 58.694 36.000 27.48 0.00 25.85 1.85
2560 2621 7.094634 GGCATGGACATATTACTTAAGATGTGG 60.095 40.741 12.75 3.26 45.09 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.113131 GAAACGACACCCTGCAACGG 62.113 60.000 0.00 0.00 0.00 4.44
10 11 1.278637 GAAACGACACCCTGCAACG 59.721 57.895 0.00 0.00 0.00 4.10
11 12 0.307760 CTGAAACGACACCCTGCAAC 59.692 55.000 0.00 0.00 0.00 4.17
12 13 1.444119 GCTGAAACGACACCCTGCAA 61.444 55.000 0.00 0.00 0.00 4.08
13 14 1.891919 GCTGAAACGACACCCTGCA 60.892 57.895 0.00 0.00 0.00 4.41
14 15 2.617274 GGCTGAAACGACACCCTGC 61.617 63.158 0.00 0.00 0.00 4.85
15 16 1.071471 AGGCTGAAACGACACCCTG 59.929 57.895 0.00 0.00 0.00 4.45
16 17 1.071471 CAGGCTGAAACGACACCCT 59.929 57.895 9.42 0.00 0.00 4.34
17 18 0.951040 CTCAGGCTGAAACGACACCC 60.951 60.000 19.29 0.00 0.00 4.61
18 19 1.569479 GCTCAGGCTGAAACGACACC 61.569 60.000 19.29 0.00 35.22 4.16
19 20 1.862806 GCTCAGGCTGAAACGACAC 59.137 57.895 19.29 0.00 35.22 3.67
20 21 4.361253 GCTCAGGCTGAAACGACA 57.639 55.556 19.29 0.00 35.22 4.35
41 42 1.383456 TTTTTGTCAGCAGCGGCACT 61.383 50.000 12.44 0.00 44.61 4.40
42 43 1.065600 TTTTTGTCAGCAGCGGCAC 59.934 52.632 12.44 1.55 44.61 5.01
43 44 1.065600 GTTTTTGTCAGCAGCGGCA 59.934 52.632 12.44 0.00 44.61 5.69
44 45 0.318955 ATGTTTTTGTCAGCAGCGGC 60.319 50.000 0.00 0.00 41.61 6.53
45 46 2.226437 ACTATGTTTTTGTCAGCAGCGG 59.774 45.455 0.00 0.00 0.00 5.52
46 47 3.228749 CACTATGTTTTTGTCAGCAGCG 58.771 45.455 0.00 0.00 0.00 5.18
47 48 4.222114 GACACTATGTTTTTGTCAGCAGC 58.778 43.478 0.00 0.00 39.60 5.25
48 49 5.422666 TGACACTATGTTTTTGTCAGCAG 57.577 39.130 0.00 0.00 43.63 4.24
53 54 7.538678 GGATGACAATGACACTATGTTTTTGTC 59.461 37.037 20.12 20.12 44.17 3.18
54 55 7.231317 AGGATGACAATGACACTATGTTTTTGT 59.769 33.333 9.06 9.06 37.97 2.83
55 56 7.596494 AGGATGACAATGACACTATGTTTTTG 58.404 34.615 0.00 4.30 32.39 2.44
56 57 7.765695 AGGATGACAATGACACTATGTTTTT 57.234 32.000 0.00 0.00 0.00 1.94
57 58 7.765695 AAGGATGACAATGACACTATGTTTT 57.234 32.000 0.00 0.00 0.00 2.43
58 59 8.862325 TTAAGGATGACAATGACACTATGTTT 57.138 30.769 0.00 0.00 0.00 2.83
59 60 8.896744 CATTAAGGATGACAATGACACTATGTT 58.103 33.333 0.00 0.00 38.03 2.71
60 61 8.267183 TCATTAAGGATGACAATGACACTATGT 58.733 33.333 0.00 0.00 39.83 2.29
61 62 8.667076 TCATTAAGGATGACAATGACACTATG 57.333 34.615 0.00 0.00 39.83 2.23
75 76 7.814264 AGCTTTTCCACTATCATTAAGGATG 57.186 36.000 12.74 5.62 37.08 3.51
77 78 9.920946 AAATAGCTTTTCCACTATCATTAAGGA 57.079 29.630 0.00 0.00 0.00 3.36
84 85 9.290988 TGTAACAAAATAGCTTTTCCACTATCA 57.709 29.630 0.00 0.00 32.21 2.15
85 86 9.774742 CTGTAACAAAATAGCTTTTCCACTATC 57.225 33.333 0.00 0.00 32.21 2.08
86 87 9.297037 ACTGTAACAAAATAGCTTTTCCACTAT 57.703 29.630 0.00 0.00 32.21 2.12
87 88 8.685838 ACTGTAACAAAATAGCTTTTCCACTA 57.314 30.769 0.00 0.00 32.21 2.74
88 89 7.582667 ACTGTAACAAAATAGCTTTTCCACT 57.417 32.000 0.00 0.00 32.21 4.00
89 90 9.556030 GATACTGTAACAAAATAGCTTTTCCAC 57.444 33.333 0.00 0.00 32.21 4.02
90 91 9.515226 AGATACTGTAACAAAATAGCTTTTCCA 57.485 29.630 0.00 0.00 32.21 3.53
114 115 9.745018 AGGATGAATGAATAACTCAAAGAAAGA 57.255 29.630 0.00 0.00 37.67 2.52
116 117 9.519191 TGAGGATGAATGAATAACTCAAAGAAA 57.481 29.630 0.00 0.00 37.67 2.52
117 118 9.690913 ATGAGGATGAATGAATAACTCAAAGAA 57.309 29.630 0.00 0.00 37.67 2.52
118 119 9.334947 GATGAGGATGAATGAATAACTCAAAGA 57.665 33.333 0.00 0.00 37.67 2.52
119 120 8.281194 CGATGAGGATGAATGAATAACTCAAAG 58.719 37.037 0.00 0.00 37.67 2.77
120 121 7.227314 CCGATGAGGATGAATGAATAACTCAAA 59.773 37.037 0.00 0.00 45.00 2.69
121 122 6.707608 CCGATGAGGATGAATGAATAACTCAA 59.292 38.462 0.00 0.00 45.00 3.02
122 123 6.226052 CCGATGAGGATGAATGAATAACTCA 58.774 40.000 0.00 0.00 45.00 3.41
123 124 5.121454 GCCGATGAGGATGAATGAATAACTC 59.879 44.000 0.00 0.00 45.00 3.01
124 125 4.999950 GCCGATGAGGATGAATGAATAACT 59.000 41.667 0.00 0.00 45.00 2.24
125 126 4.999950 AGCCGATGAGGATGAATGAATAAC 59.000 41.667 0.00 0.00 45.00 1.89
126 127 5.233083 AGCCGATGAGGATGAATGAATAA 57.767 39.130 0.00 0.00 45.00 1.40
127 128 4.897509 AGCCGATGAGGATGAATGAATA 57.102 40.909 0.00 0.00 45.00 1.75
128 129 3.784511 AGCCGATGAGGATGAATGAAT 57.215 42.857 0.00 0.00 45.00 2.57
136 137 2.092753 ACAATTCACAGCCGATGAGGAT 60.093 45.455 0.00 0.00 45.00 3.24
137 138 1.278985 ACAATTCACAGCCGATGAGGA 59.721 47.619 0.00 0.00 45.00 3.71
138 139 1.399440 CACAATTCACAGCCGATGAGG 59.601 52.381 0.00 0.00 44.97 3.86
139 140 2.349590 TCACAATTCACAGCCGATGAG 58.650 47.619 0.00 0.00 0.00 2.90
140 141 2.470983 TCACAATTCACAGCCGATGA 57.529 45.000 0.00 0.00 0.00 2.92
141 142 3.127376 TCAATCACAATTCACAGCCGATG 59.873 43.478 0.00 0.00 0.00 3.84
142 143 3.346315 TCAATCACAATTCACAGCCGAT 58.654 40.909 0.00 0.00 0.00 4.18
143 144 2.777094 TCAATCACAATTCACAGCCGA 58.223 42.857 0.00 0.00 0.00 5.54
144 145 3.058016 AGTTCAATCACAATTCACAGCCG 60.058 43.478 0.00 0.00 0.00 5.52
145 146 4.479619 GAGTTCAATCACAATTCACAGCC 58.520 43.478 0.00 0.00 0.00 4.85
146 147 4.153986 CGAGTTCAATCACAATTCACAGC 58.846 43.478 0.00 0.00 0.00 4.40
147 148 5.178252 AGACGAGTTCAATCACAATTCACAG 59.822 40.000 0.00 0.00 0.00 3.66
148 149 5.056480 AGACGAGTTCAATCACAATTCACA 58.944 37.500 0.00 0.00 0.00 3.58
149 150 5.597813 AGACGAGTTCAATCACAATTCAC 57.402 39.130 0.00 0.00 0.00 3.18
150 151 7.905604 AATAGACGAGTTCAATCACAATTCA 57.094 32.000 0.00 0.00 0.00 2.57
151 152 9.055248 CAAAATAGACGAGTTCAATCACAATTC 57.945 33.333 0.00 0.00 0.00 2.17
152 153 8.783093 TCAAAATAGACGAGTTCAATCACAATT 58.217 29.630 0.00 0.00 0.00 2.32
153 154 8.322906 TCAAAATAGACGAGTTCAATCACAAT 57.677 30.769 0.00 0.00 0.00 2.71
154 155 7.441157 ACTCAAAATAGACGAGTTCAATCACAA 59.559 33.333 0.00 0.00 36.62 3.33
155 156 6.929049 ACTCAAAATAGACGAGTTCAATCACA 59.071 34.615 0.00 0.00 36.62 3.58
156 157 7.352719 ACTCAAAATAGACGAGTTCAATCAC 57.647 36.000 0.00 0.00 36.62 3.06
157 158 7.441157 ACAACTCAAAATAGACGAGTTCAATCA 59.559 33.333 0.00 0.00 45.74 2.57
158 159 7.797819 ACAACTCAAAATAGACGAGTTCAATC 58.202 34.615 0.00 0.00 45.74 2.67
159 160 7.730364 ACAACTCAAAATAGACGAGTTCAAT 57.270 32.000 0.00 0.00 45.74 2.57
160 161 8.708742 CATACAACTCAAAATAGACGAGTTCAA 58.291 33.333 0.00 0.00 45.74 2.69
161 162 8.085909 TCATACAACTCAAAATAGACGAGTTCA 58.914 33.333 0.00 0.00 45.74 3.18
162 163 8.462143 TCATACAACTCAAAATAGACGAGTTC 57.538 34.615 0.00 0.00 45.74 3.01
164 165 8.873830 CAATCATACAACTCAAAATAGACGAGT 58.126 33.333 0.00 0.00 41.70 4.18
165 166 8.331022 CCAATCATACAACTCAAAATAGACGAG 58.669 37.037 0.00 0.00 0.00 4.18
166 167 7.279981 CCCAATCATACAACTCAAAATAGACGA 59.720 37.037 0.00 0.00 0.00 4.20
167 168 7.279981 TCCCAATCATACAACTCAAAATAGACG 59.720 37.037 0.00 0.00 0.00 4.18
168 169 8.506168 TCCCAATCATACAACTCAAAATAGAC 57.494 34.615 0.00 0.00 0.00 2.59
172 173 9.479549 ACTTATCCCAATCATACAACTCAAAAT 57.520 29.630 0.00 0.00 0.00 1.82
173 174 8.877864 ACTTATCCCAATCATACAACTCAAAA 57.122 30.769 0.00 0.00 0.00 2.44
174 175 8.877864 AACTTATCCCAATCATACAACTCAAA 57.122 30.769 0.00 0.00 0.00 2.69
175 176 8.877864 AAACTTATCCCAATCATACAACTCAA 57.122 30.769 0.00 0.00 0.00 3.02
176 177 8.877864 AAAACTTATCCCAATCATACAACTCA 57.122 30.769 0.00 0.00 0.00 3.41
177 178 9.788960 GAAAAACTTATCCCAATCATACAACTC 57.211 33.333 0.00 0.00 0.00 3.01
178 179 9.533831 AGAAAAACTTATCCCAATCATACAACT 57.466 29.630 0.00 0.00 0.00 3.16
179 180 9.573133 CAGAAAAACTTATCCCAATCATACAAC 57.427 33.333 0.00 0.00 0.00 3.32
180 181 9.308000 ACAGAAAAACTTATCCCAATCATACAA 57.692 29.630 0.00 0.00 0.00 2.41
181 182 8.739039 CACAGAAAAACTTATCCCAATCATACA 58.261 33.333 0.00 0.00 0.00 2.29
182 183 8.739972 ACACAGAAAAACTTATCCCAATCATAC 58.260 33.333 0.00 0.00 0.00 2.39
183 184 8.739039 CACACAGAAAAACTTATCCCAATCATA 58.261 33.333 0.00 0.00 0.00 2.15
184 185 7.309990 CCACACAGAAAAACTTATCCCAATCAT 60.310 37.037 0.00 0.00 0.00 2.45
185 186 6.015519 CCACACAGAAAAACTTATCCCAATCA 60.016 38.462 0.00 0.00 0.00 2.57
186 187 6.015434 ACCACACAGAAAAACTTATCCCAATC 60.015 38.462 0.00 0.00 0.00 2.67
187 188 5.838521 ACCACACAGAAAAACTTATCCCAAT 59.161 36.000 0.00 0.00 0.00 3.16
188 189 5.205056 ACCACACAGAAAAACTTATCCCAA 58.795 37.500 0.00 0.00 0.00 4.12
189 190 4.798882 ACCACACAGAAAAACTTATCCCA 58.201 39.130 0.00 0.00 0.00 4.37
190 191 7.201582 CGTATACCACACAGAAAAACTTATCCC 60.202 40.741 0.00 0.00 0.00 3.85
191 192 7.201582 CCGTATACCACACAGAAAAACTTATCC 60.202 40.741 0.00 0.00 0.00 2.59
192 193 7.332678 ACCGTATACCACACAGAAAAACTTATC 59.667 37.037 0.00 0.00 0.00 1.75
193 194 7.163441 ACCGTATACCACACAGAAAAACTTAT 58.837 34.615 0.00 0.00 0.00 1.73
194 195 6.523840 ACCGTATACCACACAGAAAAACTTA 58.476 36.000 0.00 0.00 0.00 2.24
195 196 5.370679 ACCGTATACCACACAGAAAAACTT 58.629 37.500 0.00 0.00 0.00 2.66
196 197 4.964593 ACCGTATACCACACAGAAAAACT 58.035 39.130 0.00 0.00 0.00 2.66
197 198 5.928264 ACTACCGTATACCACACAGAAAAAC 59.072 40.000 0.00 0.00 0.00 2.43
198 199 5.927689 CACTACCGTATACCACACAGAAAAA 59.072 40.000 0.00 0.00 0.00 1.94
199 200 5.472148 CACTACCGTATACCACACAGAAAA 58.528 41.667 0.00 0.00 0.00 2.29
200 201 4.618927 GCACTACCGTATACCACACAGAAA 60.619 45.833 0.00 0.00 0.00 2.52
201 202 3.119388 GCACTACCGTATACCACACAGAA 60.119 47.826 0.00 0.00 0.00 3.02
202 203 2.424601 GCACTACCGTATACCACACAGA 59.575 50.000 0.00 0.00 0.00 3.41
203 204 2.480759 GGCACTACCGTATACCACACAG 60.481 54.545 0.00 0.00 0.00 3.66
204 205 1.477700 GGCACTACCGTATACCACACA 59.522 52.381 0.00 0.00 0.00 3.72
205 206 1.477700 TGGCACTACCGTATACCACAC 59.522 52.381 0.00 0.00 43.94 3.82
206 207 1.477700 GTGGCACTACCGTATACCACA 59.522 52.381 11.13 0.00 45.45 4.17
207 208 1.753073 AGTGGCACTACCGTATACCAC 59.247 52.381 20.61 13.26 46.28 4.16
208 209 2.148446 AGTGGCACTACCGTATACCA 57.852 50.000 20.61 0.00 43.94 3.25
209 210 2.482490 CCAAGTGGCACTACCGTATACC 60.482 54.545 22.37 0.00 43.94 2.73
210 211 2.167075 ACCAAGTGGCACTACCGTATAC 59.833 50.000 22.37 0.00 43.94 1.47
211 212 2.428171 GACCAAGTGGCACTACCGTATA 59.572 50.000 22.37 0.00 43.94 1.47
212 213 1.206371 GACCAAGTGGCACTACCGTAT 59.794 52.381 22.37 0.03 43.94 3.06
213 214 0.604578 GACCAAGTGGCACTACCGTA 59.395 55.000 22.37 0.00 43.94 4.02
214 215 1.370064 GACCAAGTGGCACTACCGT 59.630 57.895 22.37 16.50 43.94 4.83
215 216 1.736645 CGACCAAGTGGCACTACCG 60.737 63.158 22.37 16.87 43.94 4.02
216 217 2.033194 GCGACCAAGTGGCACTACC 61.033 63.158 22.37 9.25 37.24 3.18
217 218 1.301401 TGCGACCAAGTGGCACTAC 60.301 57.895 22.37 11.62 41.89 2.73
218 219 3.143338 TGCGACCAAGTGGCACTA 58.857 55.556 22.37 0.00 41.89 2.74
222 223 0.745845 AGATGATGCGACCAAGTGGC 60.746 55.000 0.00 0.00 39.32 5.01
223 224 1.293924 GAGATGATGCGACCAAGTGG 58.706 55.000 0.00 0.00 42.17 4.00
224 225 0.926155 CGAGATGATGCGACCAAGTG 59.074 55.000 0.00 0.00 0.00 3.16
225 226 0.179100 CCGAGATGATGCGACCAAGT 60.179 55.000 0.00 0.00 0.00 3.16
226 227 1.493950 GCCGAGATGATGCGACCAAG 61.494 60.000 0.00 0.00 0.00 3.61
227 228 1.521457 GCCGAGATGATGCGACCAA 60.521 57.895 0.00 0.00 0.00 3.67
228 229 2.106938 GCCGAGATGATGCGACCA 59.893 61.111 0.00 0.00 0.00 4.02
229 230 1.089481 TTTGCCGAGATGATGCGACC 61.089 55.000 0.00 0.00 0.00 4.79
230 231 0.026803 GTTTGCCGAGATGATGCGAC 59.973 55.000 0.00 0.00 0.00 5.19
231 232 0.108186 AGTTTGCCGAGATGATGCGA 60.108 50.000 0.00 0.00 0.00 5.10
232 233 0.729116 AAGTTTGCCGAGATGATGCG 59.271 50.000 0.00 0.00 0.00 4.73
233 234 2.677836 TGTAAGTTTGCCGAGATGATGC 59.322 45.455 0.00 0.00 0.00 3.91
234 235 5.490139 AATGTAAGTTTGCCGAGATGATG 57.510 39.130 0.00 0.00 0.00 3.07
235 236 7.047891 TCTTAATGTAAGTTTGCCGAGATGAT 58.952 34.615 0.00 0.00 37.10 2.45
236 237 6.403049 TCTTAATGTAAGTTTGCCGAGATGA 58.597 36.000 0.00 0.00 37.10 2.92
237 238 6.662414 TCTTAATGTAAGTTTGCCGAGATG 57.338 37.500 0.00 0.00 37.10 2.90
241 242 7.877003 TCAATTTCTTAATGTAAGTTTGCCGA 58.123 30.769 0.00 0.00 37.10 5.54
254 255 8.734386 ACTGCTCTCGAATTTCAATTTCTTAAT 58.266 29.630 0.00 0.00 0.00 1.40
256 257 7.672983 ACTGCTCTCGAATTTCAATTTCTTA 57.327 32.000 0.00 0.00 0.00 2.10
257 258 6.566197 ACTGCTCTCGAATTTCAATTTCTT 57.434 33.333 0.00 0.00 0.00 2.52
259 260 7.522374 AGTAACTGCTCTCGAATTTCAATTTC 58.478 34.615 0.00 0.00 0.00 2.17
260 261 7.440523 AGTAACTGCTCTCGAATTTCAATTT 57.559 32.000 0.00 0.00 0.00 1.82
276 281 7.878036 TGGTCAGGTTAATTTTTAGTAACTGC 58.122 34.615 0.00 0.00 32.03 4.40
307 312 8.747538 TCTAGGGCTTAAAAATAGATGAAACC 57.252 34.615 0.00 0.00 0.00 3.27
311 316 9.393786 AGGTATCTAGGGCTTAAAAATAGATGA 57.606 33.333 0.00 0.00 35.42 2.92
340 345 6.340522 GCATTAAGGTTTTCATAGGTGCAAT 58.659 36.000 0.00 0.00 0.00 3.56
349 354 5.010617 AGTGAAACGGCATTAAGGTTTTCAT 59.989 36.000 13.16 4.79 45.86 2.57
354 359 4.142038 AGAAGTGAAACGGCATTAAGGTT 58.858 39.130 0.00 0.00 45.86 3.50
431 438 0.245539 GGCATTGAATGTGCAGCTGT 59.754 50.000 16.64 0.00 44.25 4.40
433 440 0.970640 TTGGCATTGAATGTGCAGCT 59.029 45.000 7.05 0.00 44.25 4.24
434 441 1.461897 GTTTGGCATTGAATGTGCAGC 59.538 47.619 7.05 0.00 44.25 5.25
459 468 1.153628 AGCGTTGACGGGCAGTATC 60.154 57.895 5.62 0.00 40.23 2.24
460 469 1.447838 CAGCGTTGACGGGCAGTAT 60.448 57.895 5.62 0.00 40.23 2.12
461 470 2.048597 CAGCGTTGACGGGCAGTA 60.049 61.111 5.62 0.00 40.23 2.74
462 471 3.750373 AACAGCGTTGACGGGCAGT 62.750 57.895 6.16 0.00 40.23 4.40
463 472 2.443957 GAAACAGCGTTGACGGGCAG 62.444 60.000 6.16 0.00 40.23 4.85
464 473 2.515057 AAACAGCGTTGACGGGCA 60.515 55.556 6.16 0.00 40.23 5.36
465 474 2.251371 GAAACAGCGTTGACGGGC 59.749 61.111 6.16 0.00 40.23 6.13
467 476 3.315796 ACGAAACAGCGTTGACGG 58.684 55.556 6.16 0.00 42.71 4.79
474 483 2.987149 ACAGAGATGTAACGAAACAGCG 59.013 45.455 0.00 0.00 40.65 5.18
475 484 3.987868 TGACAGAGATGTAACGAAACAGC 59.012 43.478 0.00 0.00 36.02 4.40
494 503 1.698165 TGACGAGCGAATCAACTGAC 58.302 50.000 0.00 0.00 0.00 3.51
523 532 9.398921 AGACTTATATTTAGGAATGGATGGAGT 57.601 33.333 0.00 0.00 0.00 3.85
551 560 9.814899 GCTCCGTATGTAGTCTATAGTTCTATA 57.185 37.037 0.00 3.72 0.00 1.31
552 561 8.319881 TGCTCCGTATGTAGTCTATAGTTCTAT 58.680 37.037 0.00 0.00 0.00 1.98
553 562 7.601886 GTGCTCCGTATGTAGTCTATAGTTCTA 59.398 40.741 0.00 2.05 0.00 2.10
554 563 6.427547 GTGCTCCGTATGTAGTCTATAGTTCT 59.572 42.308 0.00 2.96 0.00 3.01
555 564 6.204301 TGTGCTCCGTATGTAGTCTATAGTTC 59.796 42.308 0.00 0.00 0.00 3.01
556 565 6.060136 TGTGCTCCGTATGTAGTCTATAGTT 58.940 40.000 0.00 0.00 0.00 2.24
557 566 5.618236 TGTGCTCCGTATGTAGTCTATAGT 58.382 41.667 0.00 0.00 0.00 2.12
558 567 6.372185 GTTGTGCTCCGTATGTAGTCTATAG 58.628 44.000 0.00 0.00 0.00 1.31
559 568 5.049886 CGTTGTGCTCCGTATGTAGTCTATA 60.050 44.000 0.00 0.00 0.00 1.31
560 569 4.261072 CGTTGTGCTCCGTATGTAGTCTAT 60.261 45.833 0.00 0.00 0.00 1.98
561 570 3.064408 CGTTGTGCTCCGTATGTAGTCTA 59.936 47.826 0.00 0.00 0.00 2.59
562 571 2.159421 CGTTGTGCTCCGTATGTAGTCT 60.159 50.000 0.00 0.00 0.00 3.24
563 572 2.159476 TCGTTGTGCTCCGTATGTAGTC 60.159 50.000 0.00 0.00 0.00 2.59
564 573 1.814394 TCGTTGTGCTCCGTATGTAGT 59.186 47.619 0.00 0.00 0.00 2.73
565 574 2.159421 ACTCGTTGTGCTCCGTATGTAG 60.159 50.000 0.00 0.00 0.00 2.74
566 575 1.814394 ACTCGTTGTGCTCCGTATGTA 59.186 47.619 0.00 0.00 0.00 2.29
567 576 0.601558 ACTCGTTGTGCTCCGTATGT 59.398 50.000 0.00 0.00 0.00 2.29
568 577 2.554806 TACTCGTTGTGCTCCGTATG 57.445 50.000 0.00 0.00 0.00 2.39
569 578 3.581024 TTTACTCGTTGTGCTCCGTAT 57.419 42.857 0.00 0.00 0.00 3.06
570 579 3.192001 AGATTTACTCGTTGTGCTCCGTA 59.808 43.478 0.00 0.00 0.00 4.02
571 580 2.029290 AGATTTACTCGTTGTGCTCCGT 60.029 45.455 0.00 0.00 0.00 4.69
572 581 2.607187 AGATTTACTCGTTGTGCTCCG 58.393 47.619 0.00 0.00 0.00 4.63
573 582 4.326548 GTGTAGATTTACTCGTTGTGCTCC 59.673 45.833 0.00 0.00 0.00 4.70
574 583 5.162075 AGTGTAGATTTACTCGTTGTGCTC 58.838 41.667 0.00 0.00 0.00 4.26
575 584 5.047943 AGAGTGTAGATTTACTCGTTGTGCT 60.048 40.000 0.00 0.00 46.05 4.40
576 585 5.162075 AGAGTGTAGATTTACTCGTTGTGC 58.838 41.667 0.00 0.00 46.05 4.57
577 586 8.738199 TTTAGAGTGTAGATTTACTCGTTGTG 57.262 34.615 0.00 0.00 46.05 3.33
578 587 9.924650 ATTTTAGAGTGTAGATTTACTCGTTGT 57.075 29.630 0.00 0.00 46.05 3.32
580 589 8.870879 GCATTTTAGAGTGTAGATTTACTCGTT 58.129 33.333 0.00 0.00 46.05 3.85
581 590 8.033038 TGCATTTTAGAGTGTAGATTTACTCGT 58.967 33.333 0.00 0.00 46.05 4.18
582 591 8.407457 TGCATTTTAGAGTGTAGATTTACTCG 57.593 34.615 0.00 0.00 46.05 4.18
587 596 9.890629 TGTAGATGCATTTTAGAGTGTAGATTT 57.109 29.630 0.00 0.00 0.00 2.17
590 599 9.967346 GTATGTAGATGCATTTTAGAGTGTAGA 57.033 33.333 0.00 0.00 0.00 2.59
591 600 9.750125 TGTATGTAGATGCATTTTAGAGTGTAG 57.250 33.333 0.00 0.00 0.00 2.74
593 602 9.265901 GATGTATGTAGATGCATTTTAGAGTGT 57.734 33.333 0.00 0.00 35.26 3.55
594 603 8.715998 GGATGTATGTAGATGCATTTTAGAGTG 58.284 37.037 0.00 0.00 35.26 3.51
595 604 7.600375 CGGATGTATGTAGATGCATTTTAGAGT 59.400 37.037 0.00 0.00 35.26 3.24
596 605 7.600375 ACGGATGTATGTAGATGCATTTTAGAG 59.400 37.037 0.00 0.00 35.26 2.43
597 606 7.441836 ACGGATGTATGTAGATGCATTTTAGA 58.558 34.615 0.00 0.00 35.26 2.10
598 607 7.658179 ACGGATGTATGTAGATGCATTTTAG 57.342 36.000 0.00 1.10 35.26 1.85
613 622 6.266786 TCACTATGAACCACATACGGATGTAT 59.733 38.462 14.23 5.54 44.82 2.29
614 623 5.595133 TCACTATGAACCACATACGGATGTA 59.405 40.000 14.23 0.00 44.82 2.29
615 624 5.105106 TTCACTATGAACCACATACGGATGT 60.105 40.000 7.68 7.68 37.89 3.06
616 625 4.944048 TCACTATGAACCACATACGGATG 58.056 43.478 5.94 5.94 40.07 3.51
617 626 5.607939 TTCACTATGAACCACATACGGAT 57.392 39.130 0.00 0.00 40.07 4.18
618 627 5.408880 TTTCACTATGAACCACATACGGA 57.591 39.130 0.00 0.00 35.89 4.69
619 628 6.049149 AGATTTCACTATGAACCACATACGG 58.951 40.000 0.00 0.00 35.89 4.02
620 629 6.980978 AGAGATTTCACTATGAACCACATACG 59.019 38.462 0.00 0.00 35.89 3.06
621 630 9.250624 GTAGAGATTTCACTATGAACCACATAC 57.749 37.037 0.00 0.00 35.89 2.39
622 631 8.977412 TGTAGAGATTTCACTATGAACCACATA 58.023 33.333 0.00 0.00 35.89 2.29
623 632 7.851228 TGTAGAGATTTCACTATGAACCACAT 58.149 34.615 0.00 0.00 35.89 3.21
624 633 7.239763 TGTAGAGATTTCACTATGAACCACA 57.760 36.000 0.00 0.00 35.89 4.17
625 634 8.547967 TTTGTAGAGATTTCACTATGAACCAC 57.452 34.615 0.00 0.00 35.89 4.16
626 635 9.567776 TTTTTGTAGAGATTTCACTATGAACCA 57.432 29.630 0.00 0.00 35.89 3.67
627 636 9.827411 GTTTTTGTAGAGATTTCACTATGAACC 57.173 33.333 0.00 0.00 35.89 3.62
646 655 9.729281 TCTCCGTTCCTAAATATAAGTTTTTGT 57.271 29.630 0.00 0.00 0.00 2.83
649 658 9.819267 CTCTCTCCGTTCCTAAATATAAGTTTT 57.181 33.333 0.00 0.00 0.00 2.43
650 659 8.979534 ACTCTCTCCGTTCCTAAATATAAGTTT 58.020 33.333 0.00 0.00 0.00 2.66
651 660 8.536340 ACTCTCTCCGTTCCTAAATATAAGTT 57.464 34.615 0.00 0.00 0.00 2.66
652 661 9.287373 CTACTCTCTCCGTTCCTAAATATAAGT 57.713 37.037 0.00 0.00 0.00 2.24
653 662 9.287373 ACTACTCTCTCCGTTCCTAAATATAAG 57.713 37.037 0.00 0.00 0.00 1.73
655 664 9.717942 GTACTACTCTCTCCGTTCCTAAATATA 57.282 37.037 0.00 0.00 0.00 0.86
656 665 8.216423 TGTACTACTCTCTCCGTTCCTAAATAT 58.784 37.037 0.00 0.00 0.00 1.28
657 666 7.568349 TGTACTACTCTCTCCGTTCCTAAATA 58.432 38.462 0.00 0.00 0.00 1.40
658 667 6.421485 TGTACTACTCTCTCCGTTCCTAAAT 58.579 40.000 0.00 0.00 0.00 1.40
659 668 5.809001 TGTACTACTCTCTCCGTTCCTAAA 58.191 41.667 0.00 0.00 0.00 1.85
660 669 5.046014 ACTGTACTACTCTCTCCGTTCCTAA 60.046 44.000 0.00 0.00 0.00 2.69
661 670 4.469227 ACTGTACTACTCTCTCCGTTCCTA 59.531 45.833 0.00 0.00 0.00 2.94
662 671 3.263937 ACTGTACTACTCTCTCCGTTCCT 59.736 47.826 0.00 0.00 0.00 3.36
663 672 3.608796 ACTGTACTACTCTCTCCGTTCC 58.391 50.000 0.00 0.00 0.00 3.62
664 673 5.874261 AGTAACTGTACTACTCTCTCCGTTC 59.126 44.000 0.00 0.00 38.87 3.95
665 674 5.803552 AGTAACTGTACTACTCTCTCCGTT 58.196 41.667 0.00 0.00 38.87 4.44
666 675 5.418676 GAGTAACTGTACTACTCTCTCCGT 58.581 45.833 11.61 0.00 40.82 4.69
667 676 4.503734 CGAGTAACTGTACTACTCTCTCCG 59.496 50.000 15.10 3.21 42.05 4.63
668 677 5.519927 GTCGAGTAACTGTACTACTCTCTCC 59.480 48.000 15.10 2.03 42.05 3.71
669 678 5.229887 CGTCGAGTAACTGTACTACTCTCTC 59.770 48.000 15.10 6.77 42.05 3.20
670 679 5.101628 CGTCGAGTAACTGTACTACTCTCT 58.898 45.833 15.10 0.00 42.05 3.10
671 680 4.862018 ACGTCGAGTAACTGTACTACTCTC 59.138 45.833 15.10 9.33 42.05 3.20
672 681 4.815269 ACGTCGAGTAACTGTACTACTCT 58.185 43.478 15.10 0.30 42.05 3.24
673 682 5.107298 ACAACGTCGAGTAACTGTACTACTC 60.107 44.000 0.00 9.63 40.82 2.59
674 683 4.752101 ACAACGTCGAGTAACTGTACTACT 59.248 41.667 0.00 0.00 40.82 2.57
675 684 5.023551 ACAACGTCGAGTAACTGTACTAC 57.976 43.478 0.00 0.00 40.82 2.73
686 695 1.672363 TGTGACACTACAACGTCGAGT 59.328 47.619 7.20 0.00 34.78 4.18
769 778 5.173312 GTGTGATCAAATGGTCGTAGTATCG 59.827 44.000 0.00 0.00 0.00 2.92
770 779 5.462398 GGTGTGATCAAATGGTCGTAGTATC 59.538 44.000 0.00 0.00 0.00 2.24
771 780 5.105106 TGGTGTGATCAAATGGTCGTAGTAT 60.105 40.000 0.00 0.00 0.00 2.12
772 781 4.221041 TGGTGTGATCAAATGGTCGTAGTA 59.779 41.667 0.00 0.00 0.00 1.82
773 782 3.007506 TGGTGTGATCAAATGGTCGTAGT 59.992 43.478 0.00 0.00 0.00 2.73
774 783 3.595173 TGGTGTGATCAAATGGTCGTAG 58.405 45.455 0.00 0.00 0.00 3.51
778 788 4.414852 CGAAATGGTGTGATCAAATGGTC 58.585 43.478 0.00 0.00 0.00 4.02
800 810 2.159382 TCCTTTCGGAAATTGGACTGC 58.841 47.619 3.24 0.00 36.03 4.40
929 939 0.249868 GAAAAGGTTGTTGCCTGGCC 60.250 55.000 17.53 0.00 39.17 5.36
983 993 0.528466 CATCTCGTGTCGGTCATGGG 60.528 60.000 0.00 0.00 35.01 4.00
1096 1106 2.202932 GAGCACGCCCACGATGAT 60.203 61.111 0.00 0.00 43.93 2.45
1494 1504 1.225704 CTCCAGCTTGGGGATCACC 59.774 63.158 7.20 7.20 41.85 4.02
1618 1628 1.714899 GGTGACCCGGAAATGCATCG 61.715 60.000 0.73 0.00 0.00 3.84
1677 1716 0.677098 ACAATCTGCAGCTCAGCCTG 60.677 55.000 9.47 0.00 42.56 4.85
1806 1845 4.178214 ATTCCGCGCGTGCAATGG 62.178 61.111 29.95 14.28 42.97 3.16
1808 1847 3.381169 GACATTCCGCGCGTGCAAT 62.381 57.895 29.95 19.64 42.97 3.56
1889 1934 3.182772 CGTGTTGTGCACTTTACATACGA 59.817 43.478 19.41 0.00 45.57 3.43
1903 1948 6.742999 AACTATATATACACGCGTGTTGTG 57.257 37.500 45.14 28.46 41.83 3.33
1912 1957 9.524106 TGACAACTCCAAAACTATATATACACG 57.476 33.333 0.00 0.00 0.00 4.49
1950 1995 2.290323 CGTGGAGATTTTCAGGGGTTCT 60.290 50.000 0.00 0.00 0.00 3.01
1957 2002 5.721232 ACTAACCTACGTGGAGATTTTCAG 58.279 41.667 0.00 0.00 39.71 3.02
1958 2003 5.733620 ACTAACCTACGTGGAGATTTTCA 57.266 39.130 0.00 0.00 39.71 2.69
1959 2004 7.092716 TGTTACTAACCTACGTGGAGATTTTC 58.907 38.462 0.00 0.00 39.71 2.29
1960 2005 6.996509 TGTTACTAACCTACGTGGAGATTTT 58.003 36.000 0.00 0.00 39.71 1.82
1961 2006 6.594788 TGTTACTAACCTACGTGGAGATTT 57.405 37.500 0.00 0.00 39.71 2.17
1962 2007 6.594788 TTGTTACTAACCTACGTGGAGATT 57.405 37.500 0.00 0.00 39.71 2.40
1963 2008 6.786967 ATTGTTACTAACCTACGTGGAGAT 57.213 37.500 0.00 0.00 39.71 2.75
1964 2009 6.183360 GCTATTGTTACTAACCTACGTGGAGA 60.183 42.308 0.00 0.00 39.71 3.71
1965 2010 5.975939 GCTATTGTTACTAACCTACGTGGAG 59.024 44.000 0.00 0.00 39.71 3.86
1966 2011 5.653769 AGCTATTGTTACTAACCTACGTGGA 59.346 40.000 0.00 0.00 39.71 4.02
1967 2012 5.899299 AGCTATTGTTACTAACCTACGTGG 58.101 41.667 0.00 0.00 42.93 4.94
1968 2013 5.680229 CGAGCTATTGTTACTAACCTACGTG 59.320 44.000 0.00 0.00 0.00 4.49
1969 2014 5.355350 ACGAGCTATTGTTACTAACCTACGT 59.645 40.000 0.00 0.00 0.00 3.57
1970 2015 5.680229 CACGAGCTATTGTTACTAACCTACG 59.320 44.000 0.00 0.00 0.00 3.51
1971 2016 5.458126 GCACGAGCTATTGTTACTAACCTAC 59.542 44.000 0.00 0.00 37.91 3.18
1972 2017 5.125900 TGCACGAGCTATTGTTACTAACCTA 59.874 40.000 6.36 0.00 42.74 3.08
1973 2018 4.081862 TGCACGAGCTATTGTTACTAACCT 60.082 41.667 6.36 0.00 42.74 3.50
1974 2019 4.178540 TGCACGAGCTATTGTTACTAACC 58.821 43.478 6.36 0.00 42.74 2.85
1975 2020 5.773239 TTGCACGAGCTATTGTTACTAAC 57.227 39.130 6.36 0.00 42.74 2.34
1976 2021 6.978343 ATTTGCACGAGCTATTGTTACTAA 57.022 33.333 6.36 0.00 42.74 2.24
1977 2022 8.481974 TTTATTTGCACGAGCTATTGTTACTA 57.518 30.769 6.36 0.00 42.74 1.82
1978 2023 6.978343 TTATTTGCACGAGCTATTGTTACT 57.022 33.333 6.36 0.00 42.74 2.24
1979 2024 7.461107 TCTTTATTTGCACGAGCTATTGTTAC 58.539 34.615 6.36 0.00 42.74 2.50
1980 2025 7.603963 TCTTTATTTGCACGAGCTATTGTTA 57.396 32.000 6.36 0.00 42.74 2.41
1981 2026 6.494893 TCTTTATTTGCACGAGCTATTGTT 57.505 33.333 6.36 0.00 42.74 2.83
1982 2027 5.447818 GCTCTTTATTTGCACGAGCTATTGT 60.448 40.000 6.36 0.00 42.72 2.71
1983 2028 4.966366 GCTCTTTATTTGCACGAGCTATTG 59.034 41.667 6.36 0.00 42.72 1.90
1984 2029 5.162000 GCTCTTTATTTGCACGAGCTATT 57.838 39.130 6.36 0.00 42.72 1.73
1985 2030 4.802876 GCTCTTTATTTGCACGAGCTAT 57.197 40.909 6.36 2.56 42.72 2.97
1988 2033 3.477899 AAGCTCTTTATTTGCACGAGC 57.522 42.857 0.00 0.00 45.49 5.03
1989 2034 5.530519 TGTAAGCTCTTTATTTGCACGAG 57.469 39.130 0.00 0.00 0.00 4.18
1990 2035 5.933187 TTGTAAGCTCTTTATTTGCACGA 57.067 34.783 0.00 0.00 0.00 4.35
1991 2036 6.984740 TTTTGTAAGCTCTTTATTTGCACG 57.015 33.333 0.00 0.00 0.00 5.34
1992 2037 8.977505 TGATTTTTGTAAGCTCTTTATTTGCAC 58.022 29.630 0.00 0.00 0.00 4.57
1993 2038 9.195411 CTGATTTTTGTAAGCTCTTTATTTGCA 57.805 29.630 0.00 0.00 0.00 4.08
1994 2039 9.410556 TCTGATTTTTGTAAGCTCTTTATTTGC 57.589 29.630 0.00 0.00 0.00 3.68
2000 2045 9.822185 AACAAATCTGATTTTTGTAAGCTCTTT 57.178 25.926 12.74 0.00 44.32 2.52
2002 2047 9.899226 GTAACAAATCTGATTTTTGTAAGCTCT 57.101 29.630 12.74 0.00 44.32 4.09
2003 2048 9.129209 GGTAACAAATCTGATTTTTGTAAGCTC 57.871 33.333 12.74 2.20 44.32 4.09
2004 2049 8.860088 AGGTAACAAATCTGATTTTTGTAAGCT 58.140 29.630 12.74 8.52 44.32 3.74
2005 2050 9.129209 GAGGTAACAAATCTGATTTTTGTAAGC 57.871 33.333 12.74 6.72 44.32 3.09
2012 2057 9.860898 GCATTTAGAGGTAACAAATCTGATTTT 57.139 29.630 12.74 3.04 41.41 1.82
2013 2058 9.247861 AGCATTTAGAGGTAACAAATCTGATTT 57.752 29.630 9.76 9.76 41.41 2.17
2014 2059 8.814038 AGCATTTAGAGGTAACAAATCTGATT 57.186 30.769 0.00 0.00 41.41 2.57
2015 2060 9.905713 TTAGCATTTAGAGGTAACAAATCTGAT 57.094 29.630 0.00 0.00 41.41 2.90
2016 2061 9.733556 TTTAGCATTTAGAGGTAACAAATCTGA 57.266 29.630 0.00 0.00 41.41 3.27
2017 2062 9.994432 CTTTAGCATTTAGAGGTAACAAATCTG 57.006 33.333 0.00 0.00 41.41 2.90
2018 2063 8.678199 GCTTTAGCATTTAGAGGTAACAAATCT 58.322 33.333 0.00 0.00 41.59 2.40
2019 2064 8.678199 AGCTTTAGCATTTAGAGGTAACAAATC 58.322 33.333 4.33 0.00 45.16 2.17
2020 2065 8.581253 AGCTTTAGCATTTAGAGGTAACAAAT 57.419 30.769 4.33 0.00 45.16 2.32
2021 2066 7.996098 AGCTTTAGCATTTAGAGGTAACAAA 57.004 32.000 4.33 0.00 45.16 2.83
2022 2067 9.162764 CTTAGCTTTAGCATTTAGAGGTAACAA 57.837 33.333 4.33 0.00 45.16 2.83
2023 2068 7.280205 GCTTAGCTTTAGCATTTAGAGGTAACA 59.720 37.037 13.81 0.00 45.16 2.41
2024 2069 7.496263 AGCTTAGCTTTAGCATTTAGAGGTAAC 59.504 37.037 19.06 0.00 45.16 2.50
2025 2070 7.495934 CAGCTTAGCTTTAGCATTTAGAGGTAA 59.504 37.037 19.06 0.00 45.16 2.85
2026 2071 6.986817 CAGCTTAGCTTTAGCATTTAGAGGTA 59.013 38.462 19.06 0.00 45.16 3.08
2027 2072 5.819901 CAGCTTAGCTTTAGCATTTAGAGGT 59.180 40.000 19.06 0.00 45.16 3.85
2028 2073 5.819901 ACAGCTTAGCTTTAGCATTTAGAGG 59.180 40.000 19.06 0.00 45.16 3.69
2029 2074 6.238320 CCACAGCTTAGCTTTAGCATTTAGAG 60.238 42.308 19.06 0.00 45.16 2.43
2030 2075 5.586243 CCACAGCTTAGCTTTAGCATTTAGA 59.414 40.000 19.06 0.00 45.16 2.10
2031 2076 5.731686 GCCACAGCTTAGCTTTAGCATTTAG 60.732 44.000 19.06 7.76 41.11 1.85
2032 2077 4.096382 GCCACAGCTTAGCTTTAGCATTTA 59.904 41.667 19.06 0.00 41.11 1.40
2033 2078 3.119352 GCCACAGCTTAGCTTTAGCATTT 60.119 43.478 19.06 3.86 41.11 2.32
2034 2079 2.424956 GCCACAGCTTAGCTTTAGCATT 59.575 45.455 19.06 5.90 41.11 3.56
2035 2080 2.019984 GCCACAGCTTAGCTTTAGCAT 58.980 47.619 19.06 7.21 41.11 3.79
2036 2081 1.453155 GCCACAGCTTAGCTTTAGCA 58.547 50.000 19.06 0.00 41.11 3.49
2037 2082 0.375106 CGCCACAGCTTAGCTTTAGC 59.625 55.000 3.00 1.75 36.40 3.09
2038 2083 0.375106 GCGCCACAGCTTAGCTTTAG 59.625 55.000 3.00 0.00 36.40 1.85
2039 2084 1.024579 GGCGCCACAGCTTAGCTTTA 61.025 55.000 24.80 0.00 36.40 1.85
2040 2085 2.335712 GGCGCCACAGCTTAGCTTT 61.336 57.895 24.80 0.00 36.40 3.51
2041 2086 2.747855 GGCGCCACAGCTTAGCTT 60.748 61.111 24.80 0.00 36.40 3.74
2042 2087 3.672295 GAGGCGCCACAGCTTAGCT 62.672 63.158 31.54 0.00 40.77 3.32
2043 2088 3.198489 GAGGCGCCACAGCTTAGC 61.198 66.667 31.54 0.00 36.60 3.09
2044 2089 1.812922 CTGAGGCGCCACAGCTTAG 60.813 63.158 35.49 17.10 36.60 2.18
2045 2090 2.265739 CTGAGGCGCCACAGCTTA 59.734 61.111 35.49 10.64 36.60 3.09
2049 2094 1.812922 CTAAGCTGAGGCGCCACAG 60.813 63.158 39.45 39.45 44.37 3.66
2056 2101 1.826709 GGTCTCCCTAAGCTGAGGC 59.173 63.158 12.35 2.97 35.00 4.70
2059 2104 0.040646 TTCCGGTCTCCCTAAGCTGA 59.959 55.000 0.00 0.00 0.00 4.26
2061 2106 0.252103 TGTTCCGGTCTCCCTAAGCT 60.252 55.000 0.00 0.00 0.00 3.74
2065 2110 1.305549 GGGTGTTCCGGTCTCCCTA 60.306 63.158 22.49 0.00 36.17 3.53
2068 2113 4.078516 CGGGGTGTTCCGGTCTCC 62.079 72.222 0.00 6.65 45.78 3.71
2090 2135 0.392193 CCTGAACTCTGCGCTGGAAT 60.392 55.000 14.70 0.48 0.00 3.01
2091 2136 1.004560 CCTGAACTCTGCGCTGGAA 60.005 57.895 14.70 0.00 0.00 3.53
2092 2137 2.159819 GACCTGAACTCTGCGCTGGA 62.160 60.000 14.70 8.82 0.00 3.86
2098 2143 2.851195 TCCAAAAGACCTGAACTCTGC 58.149 47.619 0.00 0.00 0.00 4.26
2104 2150 4.753107 GTGTCGTATTCCAAAAGACCTGAA 59.247 41.667 0.00 0.00 0.00 3.02
2108 2154 3.120304 GCAGTGTCGTATTCCAAAAGACC 60.120 47.826 0.00 0.00 0.00 3.85
2114 2160 2.224426 ACCAAGCAGTGTCGTATTCCAA 60.224 45.455 0.00 0.00 0.00 3.53
2198 2245 2.016704 GTCGCCGTGCCGAGATATG 61.017 63.158 0.00 0.00 37.99 1.78
2199 2246 2.335369 GTCGCCGTGCCGAGATAT 59.665 61.111 0.00 0.00 37.99 1.63
2203 2250 4.111016 TAGTGTCGCCGTGCCGAG 62.111 66.667 0.00 0.00 37.99 4.63
2237 2284 5.939883 TGAATTGTTCTGTTGCTAGCATAGT 59.060 36.000 20.13 3.25 41.93 2.12
2249 2296 2.287788 CCGCTGCTTTGAATTGTTCTGT 60.288 45.455 0.00 0.00 0.00 3.41
2258 2305 2.113860 AGCTATTCCGCTGCTTTGAA 57.886 45.000 0.00 0.00 39.16 2.69
2261 2308 2.409948 AGAAGCTATTCCGCTGCTTT 57.590 45.000 0.00 0.00 43.47 3.51
2275 2322 0.444260 GTTGTTCCGCTGCTAGAAGC 59.556 55.000 13.30 13.30 42.82 3.86
2300 2347 2.499693 TGCGGAGTGAAGTCCATCATTA 59.500 45.455 5.07 0.00 36.23 1.90
2302 2349 0.904649 TGCGGAGTGAAGTCCATCAT 59.095 50.000 5.07 0.00 36.23 2.45
2312 2359 1.371183 CAAAGTCCCTGCGGAGTGA 59.629 57.895 2.36 0.00 41.32 3.41
2328 2375 1.448893 GGATACGCGTTCCAGCCAA 60.449 57.895 20.78 0.00 33.21 4.52
2367 2414 1.069973 CGTGATTGCTTGCTTGTCGAA 60.070 47.619 0.00 0.00 0.00 3.71
2444 2491 2.418368 TTGTCTTGGTTGCTGTGAGT 57.582 45.000 0.00 0.00 0.00 3.41
2459 2506 7.754924 CCTGTAAATACCATGATGTTGTTTGTC 59.245 37.037 0.00 0.00 0.00 3.18
2461 2508 6.531240 GCCTGTAAATACCATGATGTTGTTTG 59.469 38.462 0.00 0.00 0.00 2.93
2486 2544 8.939929 AGTAGTGTCATGTTCATCATTGTTTAG 58.060 33.333 0.00 0.00 34.09 1.85
2506 2567 6.853872 GCTCATCTCGTATTGTTCTAGTAGTG 59.146 42.308 0.00 0.00 0.00 2.74
2509 2570 6.937436 TGCTCATCTCGTATTGTTCTAGTA 57.063 37.500 0.00 0.00 0.00 1.82
2560 2621 7.864686 TGCTGCATGTTAGTATCATAATTGTC 58.135 34.615 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.