>input_sequence_74774
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-------------------------------------------------ATGATAGCGATGCCGTCGTCGGCGTCCTCCA
CGCCGGCCGCCGACGTGTTGGGCGTGCCGCCTCCGCTGCCGCAGCCGCCGGGCGCGGACGTGTCCATCATCGTGGGCGTG
CTCACGGGCGTCCTCCTGGGGCTCTTCCTCTTCCTCATCTACGCCAAGCACTGCAGGCAACGCGGTGCCCGCGGCGCGGC
CGGCCGCCTGGGCCTCGGGTTCCGGGCGTCGTCGACGTGCGACCGGTGCTGCTCCGGCCTGAGCCTCTCGGTCGTTGACG
CGCTCCCGGTGGTCAGGTTCGGGGACATGGGCGGCGCCGCGGCGGCCGCGCAGCCGGAGTGCGCGGTGTGCCTGGGCGCG
TTCGACGCGGCGGCCGACGAGCTGCTCCGGGTGCTGCCCAAGTGCCGCCACGCGTTCCACGCGGACTGCGTCGACACGTG
GCTGGAGGCGCACTCGACGTGCCCCGTCTGCCGCCGCCGCGTCGGCAAGGAGGACGCATTCGCGGTGATCCCCAAGCTGG
AGGCCGGCGCGGATCACGGTGACGCGGAGTGGTATCCGGCCCGCGAGGCGGAGATGCAGATCGTGGTGCGCCGACCGGCG
TGA-----------------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G529100
TACTACTTGCCGTTGCAGGGTGTCGTTTCAGCCTGAGCTTCAGTGCCGCTGCTGACAAAAACATAGTGTCATTGTCATCC
TTAATGATAGTGGAAAAGCTATTTTGTTACAGTATCTTTCTTTGAGTTATTCATTCATCCTCATCGGCTGTGAATTGTGA
TTGAACTCGTCTATTTTGAGTTGTATGATTGGGATAAGTTTTTCTGTGTGGTATACGGTAGTGCCACTTGGTCGCATCAT
CTCGGCAAACTTACATTAAGA----AATTGAAATTCGAGAGCAGTTACTAAAAATTAACCTGACCAAATATGGTTTCATC
TATTTTTAAGCCCTAGATACCTCCATTGCACCTATGAAAACCTTAATGCCGTTTCACTTCTTT-TTTTCTCAGCATAAAG
CTTCTCTGTGACCCCTT-CGACGCCCTCCAAACATCAACAGCTGCACA--TTCAATGCCAAACGGACGATACTGCCCGTC
AACGCTGTTTCGTTACATCTCTGTCAGTTGATTCGCTCGTCATTATTATATACTCCATCCATTCCTAAATATAAGTCTTT
ATAGAACTATAGACTACATACGGAGCACAACGAGTAAATCTACACTCTAAAATGCATCTACATACATCCGTATGTGGTTC
ATAGTGAAATCTCTACAAAAACTTATATTTAGGAACGGAGAGAGTAGTACAGTTACTCGACGTTGTAGTGTCACATTGGG
TGGTTTCAATAGATGAATAATGAGTTGTATTATTATTGGGAAAATTAGCGTGGTAGACGATAC-TACGACCATTTGATCA
CACCATTTCGCAGTCCAATTTCCGAAAGGAAGTACCGAAAATTAGCTACAGATCAAAGATAGCTTTCCTCTATTTTTAAG
GCGCCGGCTGACCTCCCTCGCGCCAGGAGCTCGCACGCCCTGCACCGCTCGTACGCCGGGCCAGGCAACAACCTTTTCCT
TTTCCCTCGAATGGTTTGACTTGGGCGCGCCGCCCATGACCGACACGAGATGATAGCGATGCCGTCGTCGGCGTCCTCCA
CGCCGGCCGCCGACGTGTTGGGCGTGCCGCCTCCGCTGCCGCAGCCGCCGGGCGCGGACGTGTCCATCATCGTGGGCGTG
CTCACGGGCGTCCTCCTGGGGCTCTTCCTCTTCCTCATCTACGCCAAGCACTGCAGGCAACGCGGTGCCCGCGGCGCGGC
CGGCCGCCTGGGCCTCGGGTTCCGGGCGTCGTCGACGTGCGACCGGTGCTGCTCCGGCCTGAGCCTCTCGGTCGTTGACG
CGCTCCCGGTGGTCAGGTTCGGGGACATGGGCGGCGCCGCGGCGGCCGCGCAGCCGGAGTGCGCGGTGTGCCTGGGCGCG
TTCGACGCGGCGGCCGACGAGCTGCTCCGGGTGCTGCCCAAGTGCCGCCACGCGTTCCACGCGGACTGCGTCGACACGTG
GCTGGAGGCGCACTCGACGTGCCCCGTCTGCCGCCGCCGCGTCGGCAAGGAGGACGCATTCGCGGTGATCCCCAAGCTGG
AGGCCGGCGCGGATCACGGTGACGCGGAGTGGTATCCGGCCCGCGAGGCGGAGATGCAGATCGTGGTGCGCCGACCGGCG
TGACCAACCGAGGGAGCGGCATTCGACCGATGCATTTCCGGGTCACCATGCA----------------------------
-CGCCTTCGCCGTGATACCCGAGCTCGACGCCGGTCAGGCTGAGCTGCAGATTGTGGTGCACCGACCGGCGTGACTGACC
GAGGGACGGTGGTTGGCCACGAGGGGTTCGGTAGCCGTCACTGTGCGGTCTAGCTGACGGCCGTCATTCGTTCATGATCT
TGCTCCATTGCACGCGCGGAATGTCGCCGGCCGGCCGGCCGGAGGGAGCGGGCTTTTTGATAGCTATA------CTAGGC
GGGCGTTCACCGTTCGTATGTAAAGTGCACAACACGCGTGTATATATAGTTTTGGAGTTGTCACGTGACATACAAGAACC
CCTGAAAATCTCCACGTAGGTTAGTAACAATAGCTCGTGCAAATAAAGAGCTTACAAAAATCAGATTTGTTACCTCTAAA
TGCTAAAGCTAAGCTGTGGCGCCTCAGCTTAGGGAGACCGGAACACCCCGTATTATTCCAGCGCAGA-GTTCAGGTCTTT
TGGAATACGACACTGCTTGGTATAGAACAAATCAGCTCTTTATTACAAATACTCAGGGTACAAGGGTTCA-AGTATTACA
ACGGCATATCTCGGCACGGCGACACTACGTCTGCGAAAGTAGCACTATGCTAGCAACAGAACAATTCAAAGCAGCGGAAT
AGCTTCTAGCAGCGGAACAACAACGATAATGATGGACTTCACTCCGCAGGGACTTTGGCTGGAACGCGTATCCTAGCTCG
CAAACTCGGGATCTTCGACAAGCAAGCAATCACGGCATGACCTGCAAACTAGCATGACATGCCAGGTGAGTACTTTGAAT
GTATTCACAAACTCACAGCAACCAAGAC-----------AAACAACATCATGGTATTTACAGGCTA---AACAATGATGA
ACATGACACTACTAGAACAATACGAGATGAGCATGGCATGGACATATTACTTAAGATGTGGACAATTATGATACTAACAT
GCAGCATGTTTAAG
>chr2A_239
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------------------------------------------------------------------------------AT
CGCGGCAAACTTACTTGCACTAAGCAATTGAAATTCGAGAACAGTTACTAAAAATTAACCTGATCAAATATAGTTCCATC
TATTTTTAAGCCCTAGATACCTCCGTTGCACCTCTGAATACCTTGGTGCCGTTTCACCTCATTATTTTCTCAGCATAAAG
CTTCTCTGCGACCCCTTTCGACGCCCTCCAAACATCAGCCACTGCACATTTTCAATGCCAAACGAACATACTGTCAACA-
----CTGTTTCGTTACATCTCTATCAGTTGATTCGCTCGTCATTATTA--------------------------------
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--------------------------------------------TAGTACAGTTGCTCGACGTTGCAGTGT-ACATCGGG
TAGTTTCGATGCATGAATAATGAGTTGTATTATTATTGGGA-AATTAGCGTGGTAGATAGACGATACAACCATTTGATCA
CACCATTTCACGATCCAATTTCCGAAAGGAAGTGCCGAAAATTAGCTACAGATCAAAGATAGCTTTCCTCTATTTTTAAG
GCGCCGGCTGACCTCCCTGGCGCCACCAGCTCGCACGCCCTGCACCGCTCGTACGCCGCGCCAGGCAACAACCTTTTCGT
TTTCCCTCGAATGGTTTGACCTGGGCGCGCCGGCCATGACCGACACGAGATGATGGCGATGCCGTCGTCGGCGTCCTCCA
CGCCGGCCGCCGACGTGTTGGGCGTGCCGCCCCCGCTGCCGCCGCCGCCGGGCGCGGACGTGTCCGTCATCGTGGGCGTG
CTCACGGGCGTCCTCCTGGGGCTCTTCCTCTTCCTCATCTACGCCAAGCACTGCAGGCAACGCGGCGCCCGCGGCGCGGC
CGGCCGCCTCGGCCTCGGGTTCCGGGCGTCGTCGACGTGCGACCGGTGCCGCTCCGGCCTGAGCCTCTCGGTCGTCGACG
CGCTCCCGGTCGTCAGGTTCGGGGACATGGGCGGCGCCGCGGCGGCCGCGCAGCCGGAGTGCGCGGTGTGCCTGGGCTCG
TTCGACGCGGCCGCCGACGAGCTGCTCCGGGTGCTGCCCAAGTGCCGCCACGCGTTCCACGCGGGCTGCGTCGACACGTG
GCTGGAGGCGCACTCGACGTGCCCCGTCTGCCGCCGCCGCGTCGGCAAGGAGGACGCGTTCGCCGTGATCCCCAAGCTGG
AGGCCGGCGCGGATCACGGTGACGCGGAGTGGTATCCGGCCCGCGAGGCGGAGATGCAGATCGTTGTGCGCCGACCGGCG
TGACCAACCGAGGGAGCGGCATTCGACGGATGCATTTCCGGGTCACCATGCATGAGAGCTCGCACGGCACGGCAAGGAGG
ACGCCTTCGCCGCGACTCCCGAGCTCGACGCCGGCGAGGCTGAGCTGTAGATTGTGGTGCACCGACCGGAGTGACTGGCC
GAGGGACGGTGGTTGGCCACGAGGGGTTCGGTAGCCGTCACCGTGCGGTCTAGCTGACGGTCGTCATTCGTTCATGATAT
TGCTTCGTTGCACGCGCGGAATGTCGCCGGCCGGCCGGCCGGAGGGAGCGGGCTTTTTGATAGCTATATGTATACTAGGC
GGGCGTTCACCGTCCGTATGTGAAGTGTACAACACGTGTGTGTATATAGTTTTGGAGTTGTCACGTGACATACAGGAACC
C-------------------------------------------------------------------------------
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>chr2D_677
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--------------------------------------------TAGTACAGTTGCTCGACGTTGCAGTGTCACATCGGG
TGGTTTCGATGCATGAATAATGAGTTGTATTATTATTGGGA-AATTAGCGTGGTAGATAGACAATACAACCATTTGATCA
CACCATTTCACAATCCAATTCCCGAAAGGAAGTACCGAAAATTAGCTACGGATCAAAGATAGCTTTCCTCTATTTTTAAG
GCGCCGGCTGGCCTCCCTCGCGCCACCAGCTCGCACGCCCTGCACCACTCGTACGCCGTGCCAGGCAACAACCTTTTCCT
TTTCCCTCGAATGGTTTGACTTGGGCGCGCCGGCCATGACCGACACGAGATGATGGCGATGCCGTCGTCGGCGTCCTCCA
CGCCGGCCGCCGACGTGTTGGGCGTGCCGCCCCCGCTGCCGCCGCCGCCGGGCACGGACGTGTCCGTCCTCGTGGGCGTG
CTCACGGGCGTCCTCCTGGGGCTCTTCCTCTTCCTCATCTACGCCAAGCACTGCAGGCAACGCGGTGCCCGCGGCGCGGC
CGGCCGCCTGGGCCTCGGGTTCCGGGCGTCGTCGACGTGCGACCGGTGCCGCTCCGGCCTGAGCCTCTCGGTCGTCGACG
CGCTCCCGGTGGTCAGGTTCGGGGACATGGGCGGCGCCGCGGCGGCCGCGCAGCCGGAGTGCGCGGTGTGCCTGGGCGCG
TTCGACGCGGCGGCCGACGAGCTGCTCCGGGTGCTGCCCAAGTGCCGCCACGCGTTCCACGCGGGCTGTGTCGACACGTG
GCTGGAGGCGCACTCGACGTGCCCCGTCTGCCGCCGCCGCGTCGGCAAGGAGGACGCGTTCGCCGTGATCCCCAAGCTGG
AGGCCGGCGTGGATCACGGTGACGCGGAGTGGTATCCGGCCCGCGAGGCGGAGATGCAGATCGTTGTGCGCCGACCGGCG
TGACGAACCGAGGGAGCGGCATTCGACGGATGCATTTCCGGGTCAGCATGCATGAGAGCTCGCACGGCACGGCAAGGAGG
ATGCCTTCGCCGTGACCCCCGAGCTCGACGCCGGTGAGGCTGAGCTGCAGATTGTGGTGCACCGACCGGCGTGACTGGCC
GAGGGACGGTGGTTGGCCACGAGGG-TTCGGTTGCCGTCACTGTGCAGCCTAGCTGACGGCCGTCATTCGTTCATGATCT
TGCTTCGTTGCACGCGCGGAATGTC----GCCGGCCGGCCGGAGGGAGCGCGCTTTTTGATAGCTATA------CTAGGC
GGGCATTCACCGTCCGTATGTAAAGTGTACAACACGTGTGTATATATAGTTTTGGAGTTGTCACGTGACATAC-------
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>chr5D_2048
AGT-----------------------------------------------------------------------------
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--------------TGTGGCA-CCCGGCTCATAGAGACCGGAACACCCCGTATT---CCAGCCCAGA-GATCAAGTCTTC
TGGAATACGGCACTGCTTGGCATAGAACAAATCAGATCTTTATTACAAATGATACAGATACAAGGGTTTC-GATATAACA
GGGAATTACATCGGCACAAAGACACTACGCCTGCCAAGGTTGCTCTATGCTAGCAGCAGAACAACTCGTAGCAGCGGAAT
AACTTCTAGCAGCGGAACGATGACGACAGCGGTGGACTCCACTACCCAGGGACTCTGGCTGGAACGCGTATCCTAGCTCG
CAAACTCGGGATCCTTAACAAGGAAGCAATCACGACATGACCTGCAAACTGGCATGACACGCCATCTGAGTACTTTGAAT
GTACTCGCAAGCTCACATCAACCAAAAGCAATCAAGACAA---AAAAACATGGCATTTACAGGTTA---AACAATGATGC
GCATGATATCACTAGAGCAAAATTAGATGAGCCTAGCATGAACAT-----------------------------------
--------------
>chr2D_2050
C-------------------------------------------------------------------------------
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--------------TGTGGCA-CCCGGCTCAGAGAGACCGGAACACCCCGTAGT---CCAGCCTAGA-GATCAAGTGTTC
TGGAATACGACACTTCTTGACATATAACAAATCAGCTCTTTATTACAAATACTTGGGGTACAAGGGTTTG-AGTATTACA
AAGGATCACATCGGCATGACAACACTACGTCTGCCAAGGTAGCTCTATGCTAGCAGCAGAACAACTTGAGGAAGTGAAAT
AACTTCTAGCAGTGGAATAATGACGACGGTGATGAGCTCCACTCCACAGGGACTCTGGTTGGAATGCATATCCTAGCTCG
CAAACTCGGGATCCTCGACAAGCCATCAATCACCGCATGACCTGCAATCTGGCACGAGATGCCAGGTGAGTACTTTGAAT
GTATTCACGAGCTCACATCAACCAAA-GCAATCAAGACAAAACAACAA-ATGGAATTTACAGGTTA---ATCAATAATGA
GCATGATATCACTAGACCAATACGAGATGAGCATGACATGAACATGTTACTCATGATGTGAACA-GGACGATACTACCAT
GCAGCATGTTTAA-
>chr2D_2051
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--------------TGTGGCACCCCGGCTCAGAGAGACCGGAACACCCCGTATT---CCAGCCCACA-GATCAAGTTTTC
TGGAATATGACAATGCTTGGCATATAACAAATCAACTCTTTATTACAAATACTCGGGGTACAAGG-TTCG-AGTATTACA
AAGGATCACATCGGCACGGCGACACTACGCTTGCCAAGGTAGCTGTATGCTAGCAGCGGAACAACTCGAGGATGTGAAAT
AACTTCTAGCAGCGGAATAACAACGAAGGTGATGAGCTCCACTCCGCAGGGACTCTAGCTGGAATGCATATCCTAGCTCA
CAAACTCGGGATTCTCGACAAGCAAGCAATCACGGCATGACCTGCAATCTGGCATGACACGCCAGGTGAGTACTTTGAAT
GTACTCGCAAGCTCGCAACAACCAAA-GCAATCAAGACAATACAACAACATGGAATTTACAGGTTA---ATCAATAATGA
GCATGATGTCACTAGAACAATACGAGATGAGCATAACATGAACGTATTACTCATGATGTGAACAATGATGGTACTAGCAT
GTTGCATGTTTAA-
>chr5D_2051
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--------------TGTGGCACCCCGTTTCAGAGAGACCGGAACACCCCGTATT---CCAGCCCAGA-AATCAAGTCTTC
TGGAATACGGCACTGCTTGACATAGAACAAATCAACTCTTTATTACAAATACTCAGGGTATAAGGGTTCG-AGTATTACA
ACGGATCACATTGGCACGGCGACACTATGTCTGCCAAGGTAGCTCTATGCTAGCAGCGGATCAACTCGTGGAAGCGGAAT
AACTCCTAGCAGAGGAACAATGGCGACGGTGATGGACTCCACTCCGCAGGGACTCTGACTGGAACGCTTATCCTAGCTCG
C---------ATCCTCGACAAGCAAGCAAACATGGCATGACCTGCGAGCTGGCATGACACGCCAGGTGAGTACTTTGAAT
GTACTCGCAAGCTCACAGCAACCAAA-GCAATTAAGGCAAA-CAACATCATGGCATTTACAGGTTAAAGATCAATGATGA
ACATGATATCACTAGAACAATACGAGATGAGCATGGCATAAACATGTTACTCATGATGTGAATAATGATGATACTAGCAT
GCAACATGTTTA--
>chr4D_2063
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--------------------------GCTCAGAGAGACCGGAACACCCTGTATT---CTAGCCCAGAAAATCAAGTCTTC
TCGAATACAACACTGCTTGGCATAGAACAAAGCAACTCTT-ATTACAAAGGATATGAGTACAAGGGTTTCTGATATTACA
AAGGATCG--TCGGCACGGCGACACTACACCAGCTCAAGTAGTTCTATGCTAGCAGGGGAACAACTCGTAGTAGTGGAAT
AACTCCCAGCAACGGAACAATGACGACGGTGATGAACTCCACTCCGTAGGGACTCTGGCTGCAACGC--ATCCTAGCGCA
CAAACTCGGAGTCCTCGACAAGCAATCAATCACGTCATGACCTGCAAGCTGGCATGACATGCCAGGTGAGTACTTTGAAT
GTACTTGCAAGCTCACAGCAACCAAA-GCAATCAAGACAAA-CAAT-ACATGGCATTTACAGGTTA---GTTAATGCTGA
GCATGATACAACTAGAACAGTATGATATGAGCATGGCATGAACATGTTACTCATGATATGAACA-TGATGATGCTAGCAC
T-AGCATGTTGAAG
>chr2B_2073
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------------------------------------ACCGGAACACCCCGTATT---CCAGCCCAGA-GATCGAGTCTTC
TGGATTACGTCACTGCTTGGCATAGAACAAATCAGCTCTT-ATTACAAATATTTTGGGAACAAGGGTTCA-GATA-TACA
AAGGATTACATTGGCGCGGCGATGCTACGCCTGCTAAGGTAGCTCTATACTAGCAGCAGAACGACTCGCAGGAGCGGAAT
AACTTCTAGCAGTGGAACAATGACGACAGTGATGAGCTCCACTCCACAAGGGCTCCGGCTGGGACAC--GACCTAGATCG
CAAAATCGGGAACCTCAACAAGCAATCAATCACGACATCAACTGCAATCTGGCATGACATGCCAGGTGAGTAATTTCAAT
GTACTCGCAAGCTCACAACAACCAAA-GAAATCAAGACAAAACAACAAGATGATATTTACAGGTTA---ATTAATGATGA
GAATGATACAACTAGAACAATACGAGATGAGCATGGCATGTACATGTTACTCATGATATGAACA-TGATGATACT-----
--------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-S------------S-SS-SS-------------------S----------------------S-------S---S----
------------------------S--------S----S-----SS-----------S--S-------------------
--------S----------------------------S-SS-----------------------S--SSSSSSS-SSSSS
SSSS------------------S-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------S----------S---
-------S--SS-----------------------------S---------------SSSSSS----S------------
---------S--S-------------------------------------------------------------------
-------------------------SS-------------------------------S---------------------
--------------------------------S---------------------S-------------------------
-------------------------------S----------S----------------------S--------------
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-------------------------------------------------S-------------------------S----
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----------------------------------------------------------------S---------------
---------------------------------------------------------S-----S----------------
----------------------------------------------------------------S---------------
---------------------------S----------------------------------------------------
---------------SS------------------S-----------------------------------------S--
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----S-S-------------------------------------------------------------------------
-------------S-------------S--------S-------------------------------------S-----
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS------S--S-S---S--S---------------------SSS-----S------S---S-----S
--------------------S-----------------------------------------------------------
----SS--SS------------------------S--------S-----------S--------S--S------------
-S------------------------S-S---------S---------------S-------------------------
-------------S------------------------------------S-----------------------------
----------S--------------S-S-----------------------------------S----------------
------S--S------------------------------S----------S-S------S-----S---------S---
--------------
>forward_440
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--------------------ACGCCCTCCAAACATCAACA----------------------------------------
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>reverse_2104
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-----------------------TCAGCTTAGGGAGACCGGAA-------------------------------------
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