Multiple sequence alignment - TraesCS2B01G508200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G508200 chr2B 100.000 3778 0 0 1 3778 704574129 704577906 0.000000e+00 6977.0
1 TraesCS2B01G508200 chr2B 88.144 194 19 3 1909 2099 792372647 792372839 1.060000e-55 228.0
2 TraesCS2B01G508200 chr2B 87.151 179 10 9 1144 1309 754437541 754437363 1.390000e-44 191.0
3 TraesCS2B01G508200 chr2D 89.436 1401 85 29 1135 2488 584624877 584626261 0.000000e+00 1709.0
4 TraesCS2B01G508200 chr2D 90.052 764 33 8 397 1143 584624100 584624837 0.000000e+00 950.0
5 TraesCS2B01G508200 chr2D 89.606 279 22 2 2855 3132 584626571 584626843 7.770000e-92 348.0
6 TraesCS2B01G508200 chr2D 95.270 148 3 2 2683 2830 584626369 584626512 8.160000e-57 231.0
7 TraesCS2B01G508200 chr2A 87.716 985 67 19 1544 2488 718878102 718879072 0.000000e+00 1099.0
8 TraesCS2B01G508200 chr2A 88.768 828 69 13 159 971 718863844 718864662 0.000000e+00 992.0
9 TraesCS2B01G508200 chr2A 84.742 911 73 26 615 1508 718877236 718878097 0.000000e+00 852.0
10 TraesCS2B01G508200 chr2A 87.420 628 39 8 2534 3125 718879165 718879788 0.000000e+00 686.0
11 TraesCS2B01G508200 chr2A 91.639 299 19 4 3470 3767 718879904 718880197 3.510000e-110 409.0
12 TraesCS2B01G508200 chr2A 88.942 208 10 6 397 593 718877041 718877246 1.050000e-60 244.0
13 TraesCS2B01G508200 chr3B 92.366 262 19 1 3211 3471 527660542 527660281 4.610000e-99 372.0
14 TraesCS2B01G508200 chr3B 91.288 264 22 1 3208 3471 21235878 21236140 3.590000e-95 359.0
15 TraesCS2B01G508200 chr3B 83.908 261 38 3 2531 2787 755606122 755606382 2.910000e-61 246.0
16 TraesCS2B01G508200 chr3B 87.006 177 10 9 1144 1307 761166901 761167077 1.790000e-43 187.0
17 TraesCS2B01G508200 chr3B 85.876 177 11 11 1144 1307 761142567 761142742 3.880000e-40 176.0
18 TraesCS2B01G508200 chr7B 91.954 261 21 0 3211 3471 365779761 365780021 2.140000e-97 366.0
19 TraesCS2B01G508200 chr7B 90.458 262 22 3 3210 3471 574168804 574168546 3.610000e-90 342.0
20 TraesCS2B01G508200 chr7B 90.608 181 15 1 1921 2099 577362937 577362757 4.880000e-59 239.0
21 TraesCS2B01G508200 chr7B 88.660 194 18 3 1909 2099 172137618 172137810 2.270000e-57 233.0
22 TraesCS2B01G508200 chr7B 90.055 181 16 2 1921 2099 728065605 728065425 2.270000e-57 233.0
23 TraesCS2B01G508200 chr7B 88.202 178 7 11 1144 1307 644282284 644282461 2.300000e-47 200.0
24 TraesCS2B01G508200 chr7B 86.957 69 9 0 1245 1313 435792128 435792060 1.130000e-10 78.7
25 TraesCS2B01G508200 chr5B 91.603 262 22 0 3211 3472 107691349 107691610 2.770000e-96 363.0
26 TraesCS2B01G508200 chr5B 91.221 262 23 0 3211 3472 107718508 107718769 1.290000e-94 357.0
27 TraesCS2B01G508200 chr5B 91.188 261 23 0 3211 3471 388353357 388353617 4.640000e-94 355.0
28 TraesCS2B01G508200 chr4B 91.571 261 20 1 3211 3471 228589755 228589497 3.590000e-95 359.0
29 TraesCS2B01G508200 chr4B 83.936 249 36 2 2542 2786 649492334 649492582 6.310000e-58 235.0
30 TraesCS2B01G508200 chr4B 90.055 181 16 1 1921 2099 27424412 27424232 2.270000e-57 233.0
31 TraesCS2B01G508200 chr4B 83.721 215 24 7 923 1134 649490411 649490617 3.850000e-45 193.0
32 TraesCS2B01G508200 chr7D 90.114 263 24 2 3211 3472 136641412 136641673 1.300000e-89 340.0
33 TraesCS2B01G508200 chr3A 79.310 435 65 17 2074 2488 697520958 697521387 7.990000e-72 281.0
34 TraesCS2B01G508200 chr3A 84.674 261 36 3 2531 2787 700954042 700954302 1.350000e-64 257.0
35 TraesCS2B01G508200 chr3A 88.623 167 18 1 983 1149 701122265 701122430 6.400000e-48 202.0
36 TraesCS2B01G508200 chr3A 90.323 155 12 3 983 1136 700891234 700891386 2.300000e-47 200.0
37 TraesCS2B01G508200 chr3A 85.340 191 22 6 988 1175 700959362 700959549 3.850000e-45 193.0
38 TraesCS2B01G508200 chr3A 95.745 47 1 1 1262 1308 700891420 700891465 1.460000e-09 75.0
39 TraesCS2B01G508200 chr7A 79.167 432 65 17 2077 2488 674115782 674115356 3.720000e-70 276.0
40 TraesCS2B01G508200 chr7A 77.213 531 81 25 1990 2488 113795684 113796206 1.340000e-69 274.0
41 TraesCS2B01G508200 chr7A 78.472 432 67 17 2077 2488 672598621 672598196 3.740000e-65 259.0
42 TraesCS2B01G508200 chr5A 77.256 532 80 26 1990 2488 609823106 609822583 1.340000e-69 274.0
43 TraesCS2B01G508200 chr5A 84.677 248 34 2 2542 2785 688244212 688244459 1.050000e-60 244.0
44 TraesCS2B01G508200 chrUn 90.608 181 15 2 1921 2099 62898572 62898392 4.880000e-59 239.0
45 TraesCS2B01G508200 chr6B 90.055 181 16 1 1921 2099 632001174 632000994 2.270000e-57 233.0
46 TraesCS2B01G508200 chr3D 87.912 182 17 5 976 1155 566301925 566301747 3.820000e-50 209.0
47 TraesCS2B01G508200 chr3D 90.323 155 12 3 983 1136 566423710 566423558 2.300000e-47 200.0
48 TraesCS2B01G508200 chr3D 86.857 175 19 4 983 1155 566138549 566138377 3.850000e-45 193.0
49 TraesCS2B01G508200 chr3D 85.185 189 23 4 965 1152 566394822 566394638 4.980000e-44 189.0
50 TraesCS2B01G508200 chr3D 94.000 50 1 1 1268 1315 566423519 566423470 1.460000e-09 75.0
51 TraesCS2B01G508200 chr4D 83.408 223 37 0 2563 2785 503641746 503641968 1.380000e-49 207.0
52 TraesCS2B01G508200 chr1B 80.349 229 29 11 2005 2221 117289897 117289673 3.910000e-35 159.0
53 TraesCS2B01G508200 chr5D 80.645 124 19 5 167 288 525214419 525214539 1.450000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G508200 chr2B 704574129 704577906 3777 False 6977.0 6977 100.0000 1 3778 1 chr2B.!!$F1 3777
1 TraesCS2B01G508200 chr2D 584624100 584626843 2743 False 809.5 1709 91.0910 397 3132 4 chr2D.!!$F1 2735
2 TraesCS2B01G508200 chr2A 718863844 718864662 818 False 992.0 992 88.7680 159 971 1 chr2A.!!$F1 812
3 TraesCS2B01G508200 chr2A 718877041 718880197 3156 False 658.0 1099 88.0918 397 3767 5 chr2A.!!$F2 3370
4 TraesCS2B01G508200 chr4B 649490411 649492582 2171 False 214.0 235 83.8285 923 2786 2 chr4B.!!$F1 1863
5 TraesCS2B01G508200 chr7A 113795684 113796206 522 False 274.0 274 77.2130 1990 2488 1 chr7A.!!$F1 498
6 TraesCS2B01G508200 chr5A 609822583 609823106 523 True 274.0 274 77.2560 1990 2488 1 chr5A.!!$R1 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.106819 ACTAGACGGGCGATAGGTGT 60.107 55.0 0.00 0.0 0.00 4.16 F
882 914 0.173255 GCCAAGTGCACACAACAAGT 59.827 50.0 21.04 0.0 40.77 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 2111 0.744414 AAACACGCATCTCCCATCGG 60.744 55.0 0.00 0.0 0.00 4.18 R
2860 3540 0.779997 ACCCTCCTGACAGGCAATTT 59.220 50.0 17.33 0.0 34.61 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.892852 TGAAACCATGGCTTCAAGAAGG 59.107 45.455 24.92 0.00 38.80 3.46
22 23 2.978156 AACCATGGCTTCAAGAAGGA 57.022 45.000 13.04 0.00 38.80 3.36
23 24 2.978156 ACCATGGCTTCAAGAAGGAA 57.022 45.000 13.04 0.00 38.80 3.36
24 25 2.800250 ACCATGGCTTCAAGAAGGAAG 58.200 47.619 13.04 0.00 45.58 3.46
25 26 2.376518 ACCATGGCTTCAAGAAGGAAGA 59.623 45.455 13.04 0.00 45.66 2.87
26 27 3.181429 ACCATGGCTTCAAGAAGGAAGAA 60.181 43.478 13.04 0.00 45.66 2.52
27 28 3.828451 CCATGGCTTCAAGAAGGAAGAAA 59.172 43.478 11.44 0.00 45.66 2.52
28 29 4.281688 CCATGGCTTCAAGAAGGAAGAAAA 59.718 41.667 11.44 0.00 45.66 2.29
29 30 5.221501 CCATGGCTTCAAGAAGGAAGAAAAA 60.222 40.000 11.44 0.00 45.66 1.94
30 31 6.461640 CATGGCTTCAAGAAGGAAGAAAAAT 58.538 36.000 11.44 0.00 45.66 1.82
31 32 5.846203 TGGCTTCAAGAAGGAAGAAAAATG 58.154 37.500 11.44 0.00 45.66 2.32
32 33 5.221501 TGGCTTCAAGAAGGAAGAAAAATGG 60.222 40.000 11.44 0.00 45.66 3.16
33 34 5.221521 GGCTTCAAGAAGGAAGAAAAATGGT 60.222 40.000 11.44 0.00 45.66 3.55
34 35 5.923114 GCTTCAAGAAGGAAGAAAAATGGTC 59.077 40.000 11.44 0.00 45.66 4.02
35 36 6.461509 GCTTCAAGAAGGAAGAAAAATGGTCA 60.462 38.462 11.44 0.00 45.66 4.02
36 37 7.416964 TTCAAGAAGGAAGAAAAATGGTCAA 57.583 32.000 0.00 0.00 0.00 3.18
37 38 6.805713 TCAAGAAGGAAGAAAAATGGTCAAC 58.194 36.000 0.00 0.00 0.00 3.18
38 39 6.379703 TCAAGAAGGAAGAAAAATGGTCAACA 59.620 34.615 0.00 0.00 0.00 3.33
39 40 6.790232 AGAAGGAAGAAAAATGGTCAACAA 57.210 33.333 0.00 0.00 0.00 2.83
40 41 7.365497 AGAAGGAAGAAAAATGGTCAACAAT 57.635 32.000 0.00 0.00 0.00 2.71
41 42 7.795047 AGAAGGAAGAAAAATGGTCAACAATT 58.205 30.769 0.00 0.00 0.00 2.32
42 43 8.267183 AGAAGGAAGAAAAATGGTCAACAATTT 58.733 29.630 0.00 0.00 33.71 1.82
43 44 9.541143 GAAGGAAGAAAAATGGTCAACAATTTA 57.459 29.630 0.00 0.00 31.13 1.40
44 45 9.546428 AAGGAAGAAAAATGGTCAACAATTTAG 57.454 29.630 0.00 0.00 31.13 1.85
45 46 7.657354 AGGAAGAAAAATGGTCAACAATTTAGC 59.343 33.333 0.00 0.00 31.13 3.09
46 47 7.440856 GGAAGAAAAATGGTCAACAATTTAGCA 59.559 33.333 0.00 0.00 31.13 3.49
47 48 8.729805 AAGAAAAATGGTCAACAATTTAGCAA 57.270 26.923 0.00 0.00 31.13 3.91
48 49 8.141835 AGAAAAATGGTCAACAATTTAGCAAC 57.858 30.769 0.00 0.00 31.13 4.17
49 50 6.523676 AAAATGGTCAACAATTTAGCAACG 57.476 33.333 0.00 0.00 30.61 4.10
50 51 5.446143 AATGGTCAACAATTTAGCAACGA 57.554 34.783 0.00 0.00 0.00 3.85
51 52 4.217754 TGGTCAACAATTTAGCAACGAC 57.782 40.909 0.00 0.00 0.00 4.34
52 53 3.628032 TGGTCAACAATTTAGCAACGACA 59.372 39.130 0.00 0.00 0.00 4.35
53 54 4.277174 TGGTCAACAATTTAGCAACGACAT 59.723 37.500 0.00 0.00 0.00 3.06
54 55 5.219633 GGTCAACAATTTAGCAACGACATT 58.780 37.500 0.00 0.00 0.00 2.71
55 56 5.689961 GGTCAACAATTTAGCAACGACATTT 59.310 36.000 0.00 0.00 0.00 2.32
56 57 6.129194 GGTCAACAATTTAGCAACGACATTTC 60.129 38.462 0.00 0.00 0.00 2.17
57 58 6.416455 GTCAACAATTTAGCAACGACATTTCA 59.584 34.615 0.00 0.00 0.00 2.69
58 59 6.416455 TCAACAATTTAGCAACGACATTTCAC 59.584 34.615 0.00 0.00 0.00 3.18
59 60 4.909305 ACAATTTAGCAACGACATTTCACG 59.091 37.500 0.00 0.00 0.00 4.35
60 61 5.143660 CAATTTAGCAACGACATTTCACGA 58.856 37.500 0.00 0.00 0.00 4.35
61 62 4.797693 TTTAGCAACGACATTTCACGAA 57.202 36.364 0.00 0.00 0.00 3.85
62 63 2.949714 AGCAACGACATTTCACGAAG 57.050 45.000 0.00 0.00 0.00 3.79
63 64 1.069906 AGCAACGACATTTCACGAAGC 60.070 47.619 0.00 0.00 34.99 3.86
64 65 1.333702 GCAACGACATTTCACGAAGCA 60.334 47.619 0.00 0.00 34.93 3.91
65 66 2.665519 GCAACGACATTTCACGAAGCAT 60.666 45.455 0.00 0.00 34.93 3.79
66 67 3.554524 CAACGACATTTCACGAAGCATT 58.445 40.909 0.00 0.00 0.00 3.56
67 68 3.896648 ACGACATTTCACGAAGCATTT 57.103 38.095 0.00 0.00 0.00 2.32
68 69 3.554524 ACGACATTTCACGAAGCATTTG 58.445 40.909 0.00 0.00 34.94 2.32
69 70 2.339400 CGACATTTCACGAAGCATTTGC 59.661 45.455 0.00 0.00 42.49 3.68
82 83 3.615849 GCATTTGCTAGGCATAGTGAC 57.384 47.619 7.32 0.00 38.76 3.67
83 84 2.291741 GCATTTGCTAGGCATAGTGACC 59.708 50.000 7.32 0.00 38.76 4.02
84 85 2.710096 TTTGCTAGGCATAGTGACCC 57.290 50.000 7.32 0.00 38.76 4.46
85 86 0.837272 TTGCTAGGCATAGTGACCCC 59.163 55.000 7.32 0.00 38.76 4.95
86 87 1.054406 TGCTAGGCATAGTGACCCCC 61.054 60.000 7.32 0.00 31.71 5.40
87 88 1.054406 GCTAGGCATAGTGACCCCCA 61.054 60.000 7.32 0.00 0.00 4.96
88 89 1.734655 CTAGGCATAGTGACCCCCAT 58.265 55.000 0.00 0.00 0.00 4.00
89 90 1.349026 CTAGGCATAGTGACCCCCATG 59.651 57.143 0.00 0.00 0.00 3.66
90 91 1.529244 GGCATAGTGACCCCCATGC 60.529 63.158 0.00 0.00 42.39 4.06
91 92 1.227102 GCATAGTGACCCCCATGCA 59.773 57.895 0.00 0.00 42.61 3.96
92 93 0.178981 GCATAGTGACCCCCATGCAT 60.179 55.000 0.00 0.00 42.61 3.96
93 94 1.612676 CATAGTGACCCCCATGCATG 58.387 55.000 20.19 20.19 0.00 4.06
125 126 5.821516 CGTAGGGATGGATGATACTAGAC 57.178 47.826 0.00 0.00 0.00 2.59
126 127 4.333095 CGTAGGGATGGATGATACTAGACG 59.667 50.000 0.00 0.00 0.00 4.18
127 128 3.702792 AGGGATGGATGATACTAGACGG 58.297 50.000 0.00 0.00 0.00 4.79
128 129 2.761208 GGGATGGATGATACTAGACGGG 59.239 54.545 0.00 0.00 0.00 5.28
129 130 2.166664 GGATGGATGATACTAGACGGGC 59.833 54.545 0.00 0.00 0.00 6.13
130 131 1.244816 TGGATGATACTAGACGGGCG 58.755 55.000 0.00 0.00 0.00 6.13
131 132 1.202842 TGGATGATACTAGACGGGCGA 60.203 52.381 0.00 0.00 0.00 5.54
132 133 2.093106 GGATGATACTAGACGGGCGAT 58.907 52.381 0.00 0.00 0.00 4.58
133 134 3.276857 GGATGATACTAGACGGGCGATA 58.723 50.000 0.00 0.00 0.00 2.92
134 135 3.312973 GGATGATACTAGACGGGCGATAG 59.687 52.174 0.00 0.00 0.00 2.08
135 136 2.708051 TGATACTAGACGGGCGATAGG 58.292 52.381 0.00 0.00 0.00 2.57
136 137 2.039480 TGATACTAGACGGGCGATAGGT 59.961 50.000 0.00 0.00 0.00 3.08
137 138 1.888215 TACTAGACGGGCGATAGGTG 58.112 55.000 0.00 0.00 0.00 4.00
138 139 0.106819 ACTAGACGGGCGATAGGTGT 60.107 55.000 0.00 0.00 0.00 4.16
139 140 0.311165 CTAGACGGGCGATAGGTGTG 59.689 60.000 0.00 0.00 0.00 3.82
140 141 1.105167 TAGACGGGCGATAGGTGTGG 61.105 60.000 0.00 0.00 0.00 4.17
141 142 2.363276 ACGGGCGATAGGTGTGGA 60.363 61.111 0.00 0.00 0.00 4.02
142 143 1.952102 GACGGGCGATAGGTGTGGAA 61.952 60.000 0.00 0.00 0.00 3.53
143 144 1.520787 CGGGCGATAGGTGTGGAAC 60.521 63.158 0.00 0.00 37.35 3.62
144 145 1.520787 GGGCGATAGGTGTGGAACG 60.521 63.158 0.00 0.00 42.39 3.95
161 162 2.785258 GCCAGCGTAGGAAAAGCG 59.215 61.111 0.00 0.00 37.69 4.68
189 190 2.116125 GGCAAGAGCTTGGTGGGT 59.884 61.111 11.78 0.00 40.74 4.51
210 211 2.260434 CGGGGTGGTACAGTGACG 59.740 66.667 0.00 0.00 41.80 4.35
215 216 1.001633 GGGTGGTACAGTGACGACATT 59.998 52.381 0.00 0.00 41.80 2.71
230 231 2.019984 GACATTGGTCATGGAGGAAGC 58.980 52.381 0.00 0.00 43.73 3.86
238 239 3.494048 GGTCATGGAGGAAGCAGATGTAG 60.494 52.174 0.00 0.00 0.00 2.74
239 240 3.386078 GTCATGGAGGAAGCAGATGTAGA 59.614 47.826 0.00 0.00 0.00 2.59
253 254 5.189180 CAGATGTAGAGAAAGGGAAAAGGG 58.811 45.833 0.00 0.00 0.00 3.95
254 255 5.045578 CAGATGTAGAGAAAGGGAAAAGGGA 60.046 44.000 0.00 0.00 0.00 4.20
255 256 5.733647 AGATGTAGAGAAAGGGAAAAGGGAT 59.266 40.000 0.00 0.00 0.00 3.85
264 265 1.134189 GGGAAAAGGGATGAGGTACGG 60.134 57.143 0.00 0.00 0.00 4.02
269 270 1.075450 GGGATGAGGTACGGGTCCT 60.075 63.158 0.00 0.00 38.09 3.85
339 341 4.571250 GATGCAGGACGTCGTTGA 57.429 55.556 19.22 5.79 0.00 3.18
349 351 1.263217 GACGTCGTTGAATGGCAAACT 59.737 47.619 0.00 0.00 38.44 2.66
354 356 4.612712 CGTCGTTGAATGGCAAACTATGTT 60.613 41.667 0.00 0.00 38.44 2.71
356 358 3.845775 CGTTGAATGGCAAACTATGTTCG 59.154 43.478 0.00 0.00 38.44 3.95
360 362 2.851263 TGGCAAACTATGTTCGGACT 57.149 45.000 0.00 0.00 0.00 3.85
362 364 3.592059 TGGCAAACTATGTTCGGACTAC 58.408 45.455 0.00 0.00 0.00 2.73
363 365 3.259876 TGGCAAACTATGTTCGGACTACT 59.740 43.478 0.00 0.00 0.00 2.57
371 373 3.380479 TGTTCGGACTACTCAGTTTGG 57.620 47.619 0.00 0.00 34.21 3.28
374 376 1.538512 TCGGACTACTCAGTTTGGACG 59.461 52.381 0.00 0.00 34.21 4.79
380 382 2.038387 ACTCAGTTTGGACGTTTGCT 57.962 45.000 0.00 0.00 0.00 3.91
425 428 2.027314 CCATGCCGCGAGAGAGAG 59.973 66.667 8.23 0.00 0.00 3.20
429 432 0.749818 ATGCCGCGAGAGAGAGAGAA 60.750 55.000 8.23 0.00 0.00 2.87
430 433 0.749818 TGCCGCGAGAGAGAGAGAAT 60.750 55.000 8.23 0.00 0.00 2.40
432 435 0.310543 CCGCGAGAGAGAGAGAATGG 59.689 60.000 8.23 0.00 0.00 3.16
434 437 1.398692 GCGAGAGAGAGAGAATGGGT 58.601 55.000 0.00 0.00 0.00 4.51
435 438 1.754226 GCGAGAGAGAGAGAATGGGTT 59.246 52.381 0.00 0.00 0.00 4.11
437 440 2.757868 CGAGAGAGAGAGAATGGGTTGT 59.242 50.000 0.00 0.00 0.00 3.32
438 441 3.948473 CGAGAGAGAGAGAATGGGTTGTA 59.052 47.826 0.00 0.00 0.00 2.41
526 539 2.822764 ACCGTTCTATTTCTCGATGCC 58.177 47.619 0.00 0.00 0.00 4.40
593 609 9.483916 TTCATGTATATCCATAGTTTTACCACG 57.516 33.333 0.00 0.00 0.00 4.94
609 625 3.716601 ACCACGCTTCCAATTCAAAAAG 58.283 40.909 0.00 0.00 0.00 2.27
645 661 1.005097 ACTCCTGCCATCATTCTTGCA 59.995 47.619 0.00 0.00 0.00 4.08
649 665 2.159282 CCTGCCATCATTCTTGCACTTC 60.159 50.000 0.00 0.00 0.00 3.01
656 672 2.094258 TCATTCTTGCACTTCGAATCGC 59.906 45.455 11.02 11.02 0.00 4.58
821 840 2.373169 TGGTGTGAAATTCCTGCTCTCT 59.627 45.455 0.00 0.00 0.00 3.10
843 862 2.158325 TCTTTTGCCCATCACCTTTCCT 60.158 45.455 0.00 0.00 0.00 3.36
859 886 7.608376 TCACCTTTCCTATCTATCTATCTCACG 59.392 40.741 0.00 0.00 0.00 4.35
882 914 0.173255 GCCAAGTGCACACAACAAGT 59.827 50.000 21.04 0.00 40.77 3.16
941 975 2.894731 ACTCCATCAGTCAGGTTCTCA 58.105 47.619 0.00 0.00 0.00 3.27
943 977 3.843027 ACTCCATCAGTCAGGTTCTCAAT 59.157 43.478 0.00 0.00 0.00 2.57
971 1005 4.393155 TCTCCGCACCGCAGCAAT 62.393 61.111 0.00 0.00 0.00 3.56
1236 1334 9.665719 GAGATGAGTTCCTAGATTTTCTTTCTT 57.334 33.333 0.00 0.00 0.00 2.52
1237 1335 9.665719 AGATGAGTTCCTAGATTTTCTTTCTTC 57.334 33.333 0.00 0.00 0.00 2.87
1261 1359 5.643777 CCTTCAGTAATCGTTTCTTGGATGT 59.356 40.000 0.00 0.00 0.00 3.06
1319 1425 1.555075 TCACTCAAGTAGCATCCCCAC 59.445 52.381 0.00 0.00 0.00 4.61
1364 1470 5.469084 ACTTCGGTTGTAAAATTCAGAGTCC 59.531 40.000 0.00 0.00 0.00 3.85
1365 1471 4.320870 TCGGTTGTAAAATTCAGAGTCCC 58.679 43.478 0.00 0.00 0.00 4.46
1392 1510 2.519013 CTCTTGGAGTTTTTGGGGGAG 58.481 52.381 0.00 0.00 0.00 4.30
1405 1523 0.618981 GGGGGAGGTTTCCTGTACAG 59.381 60.000 16.34 16.34 43.49 2.74
1442 1564 4.016444 GCTGTTGGTCCCTGATGATTTTA 58.984 43.478 0.00 0.00 0.00 1.52
1443 1565 4.142381 GCTGTTGGTCCCTGATGATTTTAC 60.142 45.833 0.00 0.00 0.00 2.01
1448 1570 7.070571 TGTTGGTCCCTGATGATTTTACTTTTT 59.929 33.333 0.00 0.00 0.00 1.94
1469 1591 2.809696 TCATTCAGCATCATGCCATACG 59.190 45.455 5.84 0.00 46.52 3.06
1517 1639 1.152922 ACCGCCGGAAAAGGAACAA 60.153 52.632 11.71 0.00 0.00 2.83
1520 1642 0.596082 CGCCGGAAAAGGAACAACAT 59.404 50.000 5.05 0.00 0.00 2.71
1521 1643 1.807742 CGCCGGAAAAGGAACAACATA 59.192 47.619 5.05 0.00 0.00 2.29
1522 1644 2.413634 CGCCGGAAAAGGAACAACATAC 60.414 50.000 5.05 0.00 0.00 2.39
1595 1978 9.785982 AGAATATTTATAGAACCCTTCTTGAGC 57.214 33.333 0.00 0.00 41.14 4.26
1689 2111 7.984617 ACTTCCTAGATTAGCTGATTTGTCTTC 59.015 37.037 0.00 0.00 0.00 2.87
1697 2119 2.680805 GCTGATTTGTCTTCCGATGGGA 60.681 50.000 0.00 0.00 41.83 4.37
1698 2120 3.201290 CTGATTTGTCTTCCGATGGGAG 58.799 50.000 0.00 0.00 44.98 4.30
1703 2125 0.598680 GTCTTCCGATGGGAGATGCG 60.599 60.000 0.00 0.00 44.98 4.73
1814 2284 7.255491 AGAATTTTTCCGAGTAAAACTTCGT 57.745 32.000 11.33 0.00 40.31 3.85
1868 2363 1.303643 GGCAGGAAGGGGTGAACAG 60.304 63.158 0.00 0.00 0.00 3.16
1907 2402 1.128200 TGGGACTGGGATATTGGACG 58.872 55.000 0.00 0.00 0.00 4.79
1918 2413 5.048364 TGGGATATTGGACGTGTTTTCTTTG 60.048 40.000 0.00 0.00 0.00 2.77
1927 2422 5.220700 GGACGTGTTTTCTTTGTGTATGTGA 60.221 40.000 0.00 0.00 0.00 3.58
1930 2425 7.254852 ACGTGTTTTCTTTGTGTATGTGATTT 58.745 30.769 0.00 0.00 0.00 2.17
2070 2580 0.250597 TCTTGACTGCTGTGCATGCT 60.251 50.000 20.33 0.00 38.13 3.79
2135 2645 5.173664 TCATTGAGACTGTGAACTGCATAG 58.826 41.667 0.00 0.00 41.11 2.23
2140 2651 4.344978 AGACTGTGAACTGCATAGGTCTA 58.655 43.478 0.00 0.00 41.40 2.59
2306 2830 7.872483 GTCTGGATATCTTTTCTCTCAGGAATC 59.128 40.741 2.05 0.00 0.00 2.52
2351 2875 5.387855 GCTCGTCTATTGCTCATTGTTATCG 60.388 44.000 0.00 0.00 0.00 2.92
2353 2877 5.685954 TCGTCTATTGCTCATTGTTATCGTC 59.314 40.000 0.00 0.00 0.00 4.20
2393 2917 4.092091 CGCTTTGTCTCTTCTATTGTCCAC 59.908 45.833 0.00 0.00 0.00 4.02
2437 2967 0.887247 AGCATGCACCGCAACAATTA 59.113 45.000 21.98 0.00 43.62 1.40
2499 3128 3.264947 CAGAAATTCATCAGGTGCTCGA 58.735 45.455 0.00 0.00 0.00 4.04
2510 3139 0.095417 GGTGCTCGATCGAACTTTGC 59.905 55.000 19.92 18.11 0.00 3.68
2511 3140 0.095417 GTGCTCGATCGAACTTTGCC 59.905 55.000 19.92 8.74 0.00 4.52
2515 3144 1.068832 TCGATCGAACTTTGCCGACG 61.069 55.000 16.99 0.00 37.64 5.12
2518 3147 0.788391 ATCGAACTTTGCCGACGAAC 59.212 50.000 0.00 0.00 37.64 3.95
2520 3149 0.111266 CGAACTTTGCCGACGAACTG 60.111 55.000 0.00 0.00 0.00 3.16
2559 3235 6.805016 AGGTCTATCTGAGTGATCACATTT 57.195 37.500 27.02 7.23 36.65 2.32
2639 3315 4.518590 TGCCTGACGATTTTCTTCATGAAA 59.481 37.500 9.88 0.00 42.33 2.69
2786 3462 5.448089 GGTCTCGTTCTTCTAGTGATCTCAC 60.448 48.000 2.01 2.01 46.77 3.51
2815 3491 1.225745 CTTTGAATCACCGTCGCGC 60.226 57.895 0.00 0.00 0.00 6.86
2830 3506 1.141449 GCGCCATGCTAATTGCCAA 59.859 52.632 0.00 0.00 42.00 4.52
2831 3507 1.147557 GCGCCATGCTAATTGCCAAC 61.148 55.000 0.00 0.00 42.00 3.77
2834 3510 2.287188 CGCCATGCTAATTGCCAACTAG 60.287 50.000 0.00 0.00 42.00 2.57
2837 3513 3.947196 CCATGCTAATTGCCAACTAGTGA 59.053 43.478 0.00 0.00 42.00 3.41
2843 3519 4.870123 AATTGCCAACTAGTGATTGCAA 57.130 36.364 18.11 18.11 32.01 4.08
2844 3520 4.870123 ATTGCCAACTAGTGATTGCAAA 57.130 36.364 19.10 8.51 31.58 3.68
2846 3522 4.662468 TGCCAACTAGTGATTGCAAAAA 57.338 36.364 1.71 0.00 0.00 1.94
2905 3619 1.265095 AGTTCAGTTGCAATGTGCTCG 59.735 47.619 0.59 0.00 45.31 5.03
2913 3627 1.237285 GCAATGTGCTCGGGACACTT 61.237 55.000 10.48 2.71 40.96 3.16
2914 3628 0.518636 CAATGTGCTCGGGACACTTG 59.481 55.000 10.48 8.61 38.86 3.16
2915 3629 0.108585 AATGTGCTCGGGACACTTGT 59.891 50.000 10.48 0.00 38.86 3.16
2916 3630 0.108585 ATGTGCTCGGGACACTTGTT 59.891 50.000 10.48 0.00 38.86 2.83
2917 3631 0.753867 TGTGCTCGGGACACTTGTTA 59.246 50.000 10.48 0.00 38.86 2.41
2918 3632 1.270094 TGTGCTCGGGACACTTGTTAG 60.270 52.381 10.48 0.00 38.86 2.34
2949 3694 0.611714 AGTTACCGGCGTCCTTCATT 59.388 50.000 6.01 0.00 0.00 2.57
2991 3736 5.858381 TGTCTGATAGCTTGTCTTCAGTTT 58.142 37.500 0.00 0.00 37.46 2.66
3059 3810 4.161754 GGTACCTATTAGTGCTCCAAGTGT 59.838 45.833 4.06 0.00 0.00 3.55
3062 3813 5.269991 ACCTATTAGTGCTCCAAGTGTCTA 58.730 41.667 0.00 0.00 0.00 2.59
3065 3816 7.563924 ACCTATTAGTGCTCCAAGTGTCTATTA 59.436 37.037 0.00 0.00 0.00 0.98
3070 3821 7.661536 AGTGCTCCAAGTGTCTATTATCTTA 57.338 36.000 0.00 0.00 0.00 2.10
3117 3868 5.590818 TCCTTTTGATGGAGTAGAGTACCT 58.409 41.667 0.00 0.00 0.00 3.08
3144 3925 2.772515 AGGTATACACAGAGGGGAAAGC 59.227 50.000 5.01 0.00 0.00 3.51
3172 3953 2.034124 GGCTACCGGTCTATACAACCA 58.966 52.381 12.40 0.00 36.53 3.67
3189 3970 2.519013 ACCAGCTTTGGGTTGAAGATC 58.481 47.619 0.00 0.00 34.10 2.75
3194 3975 2.747446 GCTTTGGGTTGAAGATCGCTAA 59.253 45.455 0.00 0.00 0.00 3.09
3196 3977 4.320935 GCTTTGGGTTGAAGATCGCTAAAA 60.321 41.667 0.00 0.00 0.00 1.52
3212 3993 6.698380 TCGCTAAAAGGAGGGATTCATATAC 58.302 40.000 0.00 0.00 33.79 1.47
3213 3994 6.497259 TCGCTAAAAGGAGGGATTCATATACT 59.503 38.462 0.00 0.00 33.79 2.12
3214 3995 6.814146 CGCTAAAAGGAGGGATTCATATACTC 59.186 42.308 0.00 0.00 0.00 2.59
3216 3997 6.455690 AAAAGGAGGGATTCATATACTCCC 57.544 41.667 0.00 7.92 46.93 4.30
3221 4002 3.442076 GGGATTCATATACTCCCTCCGT 58.558 50.000 8.51 0.00 44.49 4.69
3222 4003 3.838903 GGGATTCATATACTCCCTCCGTT 59.161 47.826 8.51 0.00 44.49 4.44
3223 4004 4.286291 GGGATTCATATACTCCCTCCGTTT 59.714 45.833 8.51 0.00 44.49 3.60
3224 4005 5.480205 GGATTCATATACTCCCTCCGTTTC 58.520 45.833 0.00 0.00 0.00 2.78
3225 4006 5.246429 GGATTCATATACTCCCTCCGTTTCT 59.754 44.000 0.00 0.00 0.00 2.52
3226 4007 6.239629 GGATTCATATACTCCCTCCGTTTCTT 60.240 42.308 0.00 0.00 0.00 2.52
3227 4008 6.555463 TTCATATACTCCCTCCGTTTCTTT 57.445 37.500 0.00 0.00 0.00 2.52
3228 4009 6.555463 TCATATACTCCCTCCGTTTCTTTT 57.445 37.500 0.00 0.00 0.00 2.27
3229 4010 6.954232 TCATATACTCCCTCCGTTTCTTTTT 58.046 36.000 0.00 0.00 0.00 1.94
3230 4011 8.081517 TCATATACTCCCTCCGTTTCTTTTTA 57.918 34.615 0.00 0.00 0.00 1.52
3231 4012 8.202137 TCATATACTCCCTCCGTTTCTTTTTAG 58.798 37.037 0.00 0.00 0.00 1.85
3232 4013 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
3233 4014 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
3234 4015 4.347292 ACTCCCTCCGTTTCTTTTTAGTCT 59.653 41.667 0.00 0.00 0.00 3.24
3235 4016 4.891260 TCCCTCCGTTTCTTTTTAGTCTC 58.109 43.478 0.00 0.00 0.00 3.36
3236 4017 4.001652 CCCTCCGTTTCTTTTTAGTCTCC 58.998 47.826 0.00 0.00 0.00 3.71
3237 4018 4.504340 CCCTCCGTTTCTTTTTAGTCTCCA 60.504 45.833 0.00 0.00 0.00 3.86
3238 4019 5.246307 CCTCCGTTTCTTTTTAGTCTCCAT 58.754 41.667 0.00 0.00 0.00 3.41
3239 4020 6.403878 CCTCCGTTTCTTTTTAGTCTCCATA 58.596 40.000 0.00 0.00 0.00 2.74
3240 4021 7.048512 CCTCCGTTTCTTTTTAGTCTCCATAT 58.951 38.462 0.00 0.00 0.00 1.78
3241 4022 8.202137 CCTCCGTTTCTTTTTAGTCTCCATATA 58.798 37.037 0.00 0.00 0.00 0.86
3242 4023 9.595823 CTCCGTTTCTTTTTAGTCTCCATATAA 57.404 33.333 0.00 0.00 0.00 0.98
3243 4024 9.595823 TCCGTTTCTTTTTAGTCTCCATATAAG 57.404 33.333 0.00 0.00 0.00 1.73
3244 4025 9.595823 CCGTTTCTTTTTAGTCTCCATATAAGA 57.404 33.333 0.00 0.00 0.00 2.10
3256 4037 9.927081 AGTCTCCATATAAGATTTGGTCAAAAT 57.073 29.630 0.00 0.00 41.33 1.82
3266 4047 5.905480 ATTTGGTCAAAATCAAACTTCGC 57.095 34.783 0.00 0.00 32.85 4.70
3267 4048 4.377839 TTGGTCAAAATCAAACTTCGCA 57.622 36.364 0.00 0.00 0.00 5.10
3268 4049 4.377839 TGGTCAAAATCAAACTTCGCAA 57.622 36.364 0.00 0.00 0.00 4.85
3269 4050 4.748892 TGGTCAAAATCAAACTTCGCAAA 58.251 34.783 0.00 0.00 0.00 3.68
3270 4051 4.803088 TGGTCAAAATCAAACTTCGCAAAG 59.197 37.500 0.00 0.00 38.54 2.77
3406 4187 9.601217 TTGATATCTTTTCCTACAAAGCTAGTC 57.399 33.333 3.98 0.00 34.26 2.59
3407 4188 8.758829 TGATATCTTTTCCTACAAAGCTAGTCA 58.241 33.333 3.98 0.00 34.26 3.41
3408 4189 9.255304 GATATCTTTTCCTACAAAGCTAGTCAG 57.745 37.037 0.00 0.00 34.26 3.51
3409 4190 6.665992 TCTTTTCCTACAAAGCTAGTCAGA 57.334 37.500 0.00 0.00 34.26 3.27
3410 4191 6.456501 TCTTTTCCTACAAAGCTAGTCAGAC 58.543 40.000 0.00 0.00 34.26 3.51
3411 4192 6.267928 TCTTTTCCTACAAAGCTAGTCAGACT 59.732 38.462 8.50 8.50 34.26 3.24
3412 4193 6.420913 TTTCCTACAAAGCTAGTCAGACTT 57.579 37.500 8.80 0.00 0.00 3.01
3413 4194 6.420913 TTCCTACAAAGCTAGTCAGACTTT 57.579 37.500 8.80 0.00 34.03 2.66
3414 4195 7.534723 TTCCTACAAAGCTAGTCAGACTTTA 57.465 36.000 8.80 0.00 32.54 1.85
3415 4196 6.921914 TCCTACAAAGCTAGTCAGACTTTAC 58.078 40.000 8.80 0.00 32.54 2.01
3416 4197 6.492429 TCCTACAAAGCTAGTCAGACTTTACA 59.508 38.462 8.80 0.00 32.54 2.41
3417 4198 7.178628 TCCTACAAAGCTAGTCAGACTTTACAT 59.821 37.037 8.80 0.00 32.54 2.29
3418 4199 8.467598 CCTACAAAGCTAGTCAGACTTTACATA 58.532 37.037 8.80 0.00 32.54 2.29
3419 4200 9.509855 CTACAAAGCTAGTCAGACTTTACATAG 57.490 37.037 8.80 0.00 32.54 2.23
3420 4201 7.897864 ACAAAGCTAGTCAGACTTTACATAGT 58.102 34.615 8.80 0.00 32.54 2.12
3421 4202 8.368668 ACAAAGCTAGTCAGACTTTACATAGTT 58.631 33.333 8.80 0.00 32.54 2.24
3422 4203 9.209175 CAAAGCTAGTCAGACTTTACATAGTTT 57.791 33.333 8.80 0.23 32.54 2.66
3423 4204 8.764524 AAGCTAGTCAGACTTTACATAGTTTG 57.235 34.615 8.80 0.00 32.97 2.93
3424 4205 8.123639 AGCTAGTCAGACTTTACATAGTTTGA 57.876 34.615 8.80 0.00 37.05 2.69
3431 4212 9.042008 TCAGACTTTACATAGTTTGACTTTGAC 57.958 33.333 5.70 0.00 35.19 3.18
3432 4213 8.283291 CAGACTTTACATAGTTTGACTTTGACC 58.717 37.037 5.70 0.00 33.37 4.02
3433 4214 7.990886 AGACTTTACATAGTTTGACTTTGACCA 59.009 33.333 5.70 0.00 32.57 4.02
3434 4215 8.514330 ACTTTACATAGTTTGACTTTGACCAA 57.486 30.769 5.70 0.00 32.57 3.67
3435 4216 9.131791 ACTTTACATAGTTTGACTTTGACCAAT 57.868 29.630 5.70 0.00 32.57 3.16
3436 4217 9.965824 CTTTACATAGTTTGACTTTGACCAATT 57.034 29.630 5.70 0.00 32.57 2.32
3437 4218 9.959749 TTTACATAGTTTGACTTTGACCAATTC 57.040 29.630 5.70 0.00 32.57 2.17
3438 4219 7.823745 ACATAGTTTGACTTTGACCAATTCT 57.176 32.000 5.70 0.00 32.57 2.40
3439 4220 8.237811 ACATAGTTTGACTTTGACCAATTCTT 57.762 30.769 5.70 0.00 32.57 2.52
3440 4221 9.349713 ACATAGTTTGACTTTGACCAATTCTTA 57.650 29.630 5.70 0.00 32.57 2.10
3445 4226 9.076596 GTTTGACTTTGACCAATTCTTATATGC 57.923 33.333 0.00 0.00 0.00 3.14
3446 4227 7.015226 TGACTTTGACCAATTCTTATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
3447 4228 6.821160 TGACTTTGACCAATTCTTATATGCGA 59.179 34.615 0.00 0.00 0.00 5.10
3448 4229 7.335673 TGACTTTGACCAATTCTTATATGCGAA 59.664 33.333 0.00 0.00 0.00 4.70
3449 4230 8.225603 ACTTTGACCAATTCTTATATGCGAAT 57.774 30.769 0.00 0.00 0.00 3.34
3450 4231 8.686334 ACTTTGACCAATTCTTATATGCGAATT 58.314 29.630 7.74 7.74 39.66 2.17
3466 4247 6.836577 TGCGAATTAAAAAGAAACAAAGGG 57.163 33.333 0.00 0.00 0.00 3.95
3467 4248 6.574350 TGCGAATTAAAAAGAAACAAAGGGA 58.426 32.000 0.00 0.00 0.00 4.20
3468 4249 6.699642 TGCGAATTAAAAAGAAACAAAGGGAG 59.300 34.615 0.00 0.00 0.00 4.30
3469 4250 6.700081 GCGAATTAAAAAGAAACAAAGGGAGT 59.300 34.615 0.00 0.00 0.00 3.85
3470 4251 7.863877 GCGAATTAAAAAGAAACAAAGGGAGTA 59.136 33.333 0.00 0.00 0.00 2.59
3471 4252 9.908152 CGAATTAAAAAGAAACAAAGGGAGTAT 57.092 29.630 0.00 0.00 0.00 2.12
3475 4256 5.941948 AAAGAAACAAAGGGAGTATGTCG 57.058 39.130 0.00 0.00 0.00 4.35
3476 4257 3.335579 AGAAACAAAGGGAGTATGTCGC 58.664 45.455 0.00 0.00 38.43 5.19
3532 4313 5.483937 AGGGAATTCCATATAGTATGTCGCA 59.516 40.000 25.67 0.00 38.24 5.10
3591 4372 1.502231 CGAGCGAATGAGTTATGGGG 58.498 55.000 0.00 0.00 0.00 4.96
3610 4391 1.205568 CGGCGCATTTGTACAACGT 59.794 52.632 10.83 0.00 0.00 3.99
3654 4435 0.685660 GGAACCTTCCAGACGGTCTT 59.314 55.000 8.18 0.00 46.76 3.01
3656 4437 1.343465 GAACCTTCCAGACGGTCTTGA 59.657 52.381 8.18 7.95 31.87 3.02
3701 4482 5.053978 ACTGGTTTTCTCTTTCCTGATGT 57.946 39.130 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.892852 CCTTCTTGAAGCCATGGTTTCA 59.107 45.455 32.88 32.88 42.11 2.69
1 2 3.157087 TCCTTCTTGAAGCCATGGTTTC 58.843 45.455 28.91 28.91 36.18 2.78
2 3 3.243359 TCCTTCTTGAAGCCATGGTTT 57.757 42.857 14.40 14.40 0.00 3.27
3 4 2.978156 TCCTTCTTGAAGCCATGGTT 57.022 45.000 14.67 3.81 0.00 3.67
4 5 2.376518 TCTTCCTTCTTGAAGCCATGGT 59.623 45.455 14.67 0.00 41.23 3.55
5 6 3.077484 TCTTCCTTCTTGAAGCCATGG 57.923 47.619 7.63 7.63 41.23 3.66
6 7 5.458041 TTTTCTTCCTTCTTGAAGCCATG 57.542 39.130 4.94 0.00 41.23 3.66
7 8 6.461640 CATTTTTCTTCCTTCTTGAAGCCAT 58.538 36.000 4.94 0.00 41.23 4.40
8 9 5.221501 CCATTTTTCTTCCTTCTTGAAGCCA 60.222 40.000 4.94 0.00 41.23 4.75
9 10 5.221521 ACCATTTTTCTTCCTTCTTGAAGCC 60.222 40.000 4.94 0.00 41.23 4.35
10 11 5.847304 ACCATTTTTCTTCCTTCTTGAAGC 58.153 37.500 4.94 0.00 41.23 3.86
11 12 7.042797 TGACCATTTTTCTTCCTTCTTGAAG 57.957 36.000 3.55 3.55 42.52 3.02
12 13 7.093552 TGTTGACCATTTTTCTTCCTTCTTGAA 60.094 33.333 0.00 0.00 0.00 2.69
13 14 6.379703 TGTTGACCATTTTTCTTCCTTCTTGA 59.620 34.615 0.00 0.00 0.00 3.02
14 15 6.572519 TGTTGACCATTTTTCTTCCTTCTTG 58.427 36.000 0.00 0.00 0.00 3.02
15 16 6.790232 TGTTGACCATTTTTCTTCCTTCTT 57.210 33.333 0.00 0.00 0.00 2.52
16 17 6.790232 TTGTTGACCATTTTTCTTCCTTCT 57.210 33.333 0.00 0.00 0.00 2.85
17 18 8.437360 AAATTGTTGACCATTTTTCTTCCTTC 57.563 30.769 0.00 0.00 0.00 3.46
18 19 9.546428 CTAAATTGTTGACCATTTTTCTTCCTT 57.454 29.630 0.00 0.00 31.16 3.36
19 20 7.657354 GCTAAATTGTTGACCATTTTTCTTCCT 59.343 33.333 0.00 0.00 31.16 3.36
20 21 7.440856 TGCTAAATTGTTGACCATTTTTCTTCC 59.559 33.333 0.00 0.00 31.16 3.46
21 22 8.364129 TGCTAAATTGTTGACCATTTTTCTTC 57.636 30.769 0.00 0.00 31.16 2.87
22 23 8.611757 GTTGCTAAATTGTTGACCATTTTTCTT 58.388 29.630 0.00 0.00 31.16 2.52
23 24 7.042791 CGTTGCTAAATTGTTGACCATTTTTCT 60.043 33.333 0.00 0.00 31.16 2.52
24 25 7.043059 TCGTTGCTAAATTGTTGACCATTTTTC 60.043 33.333 0.00 0.00 31.16 2.29
25 26 6.758886 TCGTTGCTAAATTGTTGACCATTTTT 59.241 30.769 0.00 0.00 31.16 1.94
26 27 6.200097 GTCGTTGCTAAATTGTTGACCATTTT 59.800 34.615 0.00 0.00 32.81 1.82
27 28 5.689961 GTCGTTGCTAAATTGTTGACCATTT 59.310 36.000 0.00 0.00 0.00 2.32
28 29 5.219633 GTCGTTGCTAAATTGTTGACCATT 58.780 37.500 0.00 0.00 0.00 3.16
29 30 4.277174 TGTCGTTGCTAAATTGTTGACCAT 59.723 37.500 0.00 0.00 0.00 3.55
30 31 3.628032 TGTCGTTGCTAAATTGTTGACCA 59.372 39.130 0.00 0.00 0.00 4.02
31 32 4.217754 TGTCGTTGCTAAATTGTTGACC 57.782 40.909 0.00 0.00 0.00 4.02
32 33 6.416455 TGAAATGTCGTTGCTAAATTGTTGAC 59.584 34.615 0.00 0.00 0.00 3.18
33 34 6.416455 GTGAAATGTCGTTGCTAAATTGTTGA 59.584 34.615 0.00 0.00 0.00 3.18
34 35 6.571588 GTGAAATGTCGTTGCTAAATTGTTG 58.428 36.000 0.00 0.00 0.00 3.33
35 36 5.398122 CGTGAAATGTCGTTGCTAAATTGTT 59.602 36.000 0.00 0.00 0.00 2.83
36 37 4.909305 CGTGAAATGTCGTTGCTAAATTGT 59.091 37.500 0.00 0.00 0.00 2.71
37 38 5.143660 TCGTGAAATGTCGTTGCTAAATTG 58.856 37.500 0.00 0.00 0.00 2.32
38 39 5.351233 TCGTGAAATGTCGTTGCTAAATT 57.649 34.783 0.00 0.00 0.00 1.82
39 40 5.351233 TTCGTGAAATGTCGTTGCTAAAT 57.649 34.783 0.00 0.00 0.00 1.40
40 41 4.768145 CTTCGTGAAATGTCGTTGCTAAA 58.232 39.130 0.00 0.00 0.00 1.85
41 42 3.363575 GCTTCGTGAAATGTCGTTGCTAA 60.364 43.478 0.00 0.00 0.00 3.09
42 43 2.156891 GCTTCGTGAAATGTCGTTGCTA 59.843 45.455 0.00 0.00 0.00 3.49
43 44 1.069906 GCTTCGTGAAATGTCGTTGCT 60.070 47.619 0.00 0.00 0.00 3.91
44 45 1.318251 GCTTCGTGAAATGTCGTTGC 58.682 50.000 0.00 0.00 0.00 4.17
45 46 2.661504 TGCTTCGTGAAATGTCGTTG 57.338 45.000 0.00 0.00 0.00 4.10
46 47 3.896648 AATGCTTCGTGAAATGTCGTT 57.103 38.095 0.00 0.00 0.00 3.85
47 48 3.554524 CAAATGCTTCGTGAAATGTCGT 58.445 40.909 0.00 0.00 0.00 4.34
48 49 2.339400 GCAAATGCTTCGTGAAATGTCG 59.661 45.455 0.00 0.00 38.21 4.35
49 50 3.959609 GCAAATGCTTCGTGAAATGTC 57.040 42.857 0.00 0.00 38.21 3.06
62 63 2.291741 GGTCACTATGCCTAGCAAATGC 59.708 50.000 0.00 0.00 43.62 3.56
63 64 2.880890 GGGTCACTATGCCTAGCAAATG 59.119 50.000 0.00 0.00 43.62 2.32
64 65 2.158608 GGGGTCACTATGCCTAGCAAAT 60.159 50.000 0.00 0.00 43.62 2.32
65 66 1.211949 GGGGTCACTATGCCTAGCAAA 59.788 52.381 0.00 0.00 43.62 3.68
66 67 0.837272 GGGGTCACTATGCCTAGCAA 59.163 55.000 0.00 0.00 43.62 3.91
67 68 1.054406 GGGGGTCACTATGCCTAGCA 61.054 60.000 0.00 0.00 44.86 3.49
68 69 1.054406 TGGGGGTCACTATGCCTAGC 61.054 60.000 0.00 0.00 0.00 3.42
69 70 1.349026 CATGGGGGTCACTATGCCTAG 59.651 57.143 0.00 0.00 0.00 3.02
70 71 1.434188 CATGGGGGTCACTATGCCTA 58.566 55.000 0.00 0.00 0.00 3.93
71 72 1.999634 GCATGGGGGTCACTATGCCT 62.000 60.000 9.94 0.00 39.88 4.75
72 73 1.529244 GCATGGGGGTCACTATGCC 60.529 63.158 9.94 0.00 39.88 4.40
73 74 0.178981 ATGCATGGGGGTCACTATGC 60.179 55.000 13.52 13.52 44.56 3.14
74 75 1.612676 CATGCATGGGGGTCACTATG 58.387 55.000 19.40 0.00 0.00 2.23
75 76 0.479815 CCATGCATGGGGGTCACTAT 59.520 55.000 34.31 0.00 44.31 2.12
76 77 1.922057 CCATGCATGGGGGTCACTA 59.078 57.895 34.31 0.00 44.31 2.74
77 78 2.685366 CCATGCATGGGGGTCACT 59.315 61.111 34.31 0.00 44.31 3.41
101 102 3.827817 AGTATCATCCATCCCTACGGA 57.172 47.619 0.00 0.00 44.33 4.69
102 103 4.641094 GTCTAGTATCATCCATCCCTACGG 59.359 50.000 0.00 0.00 0.00 4.02
103 104 4.333095 CGTCTAGTATCATCCATCCCTACG 59.667 50.000 0.00 0.00 0.00 3.51
104 105 4.641094 CCGTCTAGTATCATCCATCCCTAC 59.359 50.000 0.00 0.00 0.00 3.18
105 106 4.325109 CCCGTCTAGTATCATCCATCCCTA 60.325 50.000 0.00 0.00 0.00 3.53
106 107 3.564571 CCCGTCTAGTATCATCCATCCCT 60.565 52.174 0.00 0.00 0.00 4.20
107 108 2.761208 CCCGTCTAGTATCATCCATCCC 59.239 54.545 0.00 0.00 0.00 3.85
108 109 2.166664 GCCCGTCTAGTATCATCCATCC 59.833 54.545 0.00 0.00 0.00 3.51
109 110 2.159366 CGCCCGTCTAGTATCATCCATC 60.159 54.545 0.00 0.00 0.00 3.51
110 111 1.819288 CGCCCGTCTAGTATCATCCAT 59.181 52.381 0.00 0.00 0.00 3.41
111 112 1.202842 TCGCCCGTCTAGTATCATCCA 60.203 52.381 0.00 0.00 0.00 3.41
112 113 1.531423 TCGCCCGTCTAGTATCATCC 58.469 55.000 0.00 0.00 0.00 3.51
113 114 3.312973 CCTATCGCCCGTCTAGTATCATC 59.687 52.174 0.00 0.00 0.00 2.92
114 115 3.280295 CCTATCGCCCGTCTAGTATCAT 58.720 50.000 0.00 0.00 0.00 2.45
115 116 2.039480 ACCTATCGCCCGTCTAGTATCA 59.961 50.000 0.00 0.00 0.00 2.15
116 117 2.419324 CACCTATCGCCCGTCTAGTATC 59.581 54.545 0.00 0.00 0.00 2.24
117 118 2.224719 ACACCTATCGCCCGTCTAGTAT 60.225 50.000 0.00 0.00 0.00 2.12
118 119 1.141657 ACACCTATCGCCCGTCTAGTA 59.858 52.381 0.00 0.00 0.00 1.82
119 120 0.106819 ACACCTATCGCCCGTCTAGT 60.107 55.000 0.00 0.00 0.00 2.57
120 121 0.311165 CACACCTATCGCCCGTCTAG 59.689 60.000 0.00 0.00 0.00 2.43
121 122 1.105167 CCACACCTATCGCCCGTCTA 61.105 60.000 0.00 0.00 0.00 2.59
122 123 2.423898 CCACACCTATCGCCCGTCT 61.424 63.158 0.00 0.00 0.00 4.18
123 124 1.952102 TTCCACACCTATCGCCCGTC 61.952 60.000 0.00 0.00 0.00 4.79
124 125 1.985662 TTCCACACCTATCGCCCGT 60.986 57.895 0.00 0.00 0.00 5.28
125 126 1.520787 GTTCCACACCTATCGCCCG 60.521 63.158 0.00 0.00 0.00 6.13
126 127 1.520787 CGTTCCACACCTATCGCCC 60.521 63.158 0.00 0.00 0.00 6.13
127 128 2.171725 GCGTTCCACACCTATCGCC 61.172 63.158 0.00 0.00 38.16 5.54
128 129 2.171725 GGCGTTCCACACCTATCGC 61.172 63.158 0.00 0.00 42.32 4.58
129 130 0.806102 CTGGCGTTCCACACCTATCG 60.806 60.000 0.00 0.00 37.47 2.92
130 131 1.090052 GCTGGCGTTCCACACCTATC 61.090 60.000 0.00 0.00 37.47 2.08
131 132 1.078426 GCTGGCGTTCCACACCTAT 60.078 57.895 0.00 0.00 37.47 2.57
132 133 2.345991 GCTGGCGTTCCACACCTA 59.654 61.111 0.00 0.00 37.47 3.08
133 134 4.988598 CGCTGGCGTTCCACACCT 62.989 66.667 6.83 0.00 37.47 4.00
143 144 2.785258 GCTTTTCCTACGCTGGCG 59.215 61.111 13.56 13.56 46.03 5.69
144 145 2.750888 CCGCTTTTCCTACGCTGGC 61.751 63.158 0.00 0.00 0.00 4.85
145 146 2.750888 GCCGCTTTTCCTACGCTGG 61.751 63.158 0.00 0.00 0.00 4.85
146 147 2.785258 GCCGCTTTTCCTACGCTG 59.215 61.111 0.00 0.00 0.00 5.18
147 148 2.813908 CGCCGCTTTTCCTACGCT 60.814 61.111 0.00 0.00 0.00 5.07
148 149 3.861263 CCGCCGCTTTTCCTACGC 61.861 66.667 0.00 0.00 0.00 4.42
149 150 2.125832 TCCGCCGCTTTTCCTACG 60.126 61.111 0.00 0.00 0.00 3.51
150 151 1.814169 CCTCCGCCGCTTTTCCTAC 60.814 63.158 0.00 0.00 0.00 3.18
151 152 2.234913 GACCTCCGCCGCTTTTCCTA 62.235 60.000 0.00 0.00 0.00 2.94
152 153 3.607370 GACCTCCGCCGCTTTTCCT 62.607 63.158 0.00 0.00 0.00 3.36
153 154 3.125573 GACCTCCGCCGCTTTTCC 61.126 66.667 0.00 0.00 0.00 3.13
154 155 3.125573 GGACCTCCGCCGCTTTTC 61.126 66.667 0.00 0.00 0.00 2.29
172 173 2.116125 ACCCACCAAGCTCTTGCC 59.884 61.111 4.17 0.00 40.80 4.52
173 174 2.270986 CCACCCACCAAGCTCTTGC 61.271 63.158 4.17 0.00 39.16 4.01
189 190 4.966274 ACTGTACCACCCCGGCCA 62.966 66.667 2.24 0.00 39.03 5.36
194 195 1.291272 GTCGTCACTGTACCACCCC 59.709 63.158 0.00 0.00 0.00 4.95
197 198 2.066262 CCAATGTCGTCACTGTACCAC 58.934 52.381 0.00 0.00 0.00 4.16
210 211 2.019984 GCTTCCTCCATGACCAATGTC 58.980 52.381 0.00 0.00 42.12 3.06
215 216 1.211212 CATCTGCTTCCTCCATGACCA 59.789 52.381 0.00 0.00 0.00 4.02
230 231 5.045578 TCCCTTTTCCCTTTCTCTACATCTG 60.046 44.000 0.00 0.00 0.00 2.90
238 239 3.010696 ACCTCATCCCTTTTCCCTTTCTC 59.989 47.826 0.00 0.00 0.00 2.87
239 240 2.996742 ACCTCATCCCTTTTCCCTTTCT 59.003 45.455 0.00 0.00 0.00 2.52
253 254 1.341531 CATCAGGACCCGTACCTCATC 59.658 57.143 0.00 0.00 35.35 2.92
254 255 1.343075 ACATCAGGACCCGTACCTCAT 60.343 52.381 0.00 0.00 35.35 2.90
255 256 0.040646 ACATCAGGACCCGTACCTCA 59.959 55.000 0.00 0.00 35.35 3.86
264 265 3.081804 CACCTAAAACCACATCAGGACC 58.918 50.000 0.00 0.00 0.00 4.46
269 270 1.427368 AGCCCACCTAAAACCACATCA 59.573 47.619 0.00 0.00 0.00 3.07
315 317 0.032678 GACGTCCTGCATCGATCCAT 59.967 55.000 3.51 0.00 0.00 3.41
339 341 3.686016 AGTCCGAACATAGTTTGCCATT 58.314 40.909 0.00 0.00 0.00 3.16
349 351 4.768448 TCCAAACTGAGTAGTCCGAACATA 59.232 41.667 0.00 0.00 35.69 2.29
354 356 1.538512 CGTCCAAACTGAGTAGTCCGA 59.461 52.381 0.00 0.00 35.69 4.55
356 358 3.382048 AACGTCCAAACTGAGTAGTCC 57.618 47.619 0.00 0.00 35.69 3.85
360 362 2.869801 CAGCAAACGTCCAAACTGAGTA 59.130 45.455 0.00 0.00 0.00 2.59
362 364 1.597937 GCAGCAAACGTCCAAACTGAG 60.598 52.381 7.84 0.00 0.00 3.35
363 365 0.380378 GCAGCAAACGTCCAAACTGA 59.620 50.000 7.84 0.00 0.00 3.41
371 373 3.638484 ACCTTAAATTGCAGCAAACGTC 58.362 40.909 12.97 0.00 0.00 4.34
526 539 4.386867 TCCAAGTAGATAAACTCCGCTG 57.613 45.455 0.00 0.00 0.00 5.18
593 609 9.624697 AAAACTTTTTCTTTTTGAATTGGAAGC 57.375 25.926 0.00 0.00 34.24 3.86
609 625 5.041287 GCAGGAGTGTGGTAAAACTTTTTC 58.959 41.667 0.00 0.00 0.00 2.29
656 672 1.065102 CAAATGGGAAGCTGCATCGAG 59.935 52.381 1.02 0.00 0.00 4.04
659 675 1.134907 CACCAAATGGGAAGCTGCATC 60.135 52.381 1.02 0.00 41.15 3.91
802 821 4.322567 AGAAGAGAGCAGGAATTTCACAC 58.677 43.478 0.00 0.00 0.00 3.82
821 840 2.632512 GGAAAGGTGATGGGCAAAAGAA 59.367 45.455 0.00 0.00 0.00 2.52
843 862 3.872182 GGCTCGCGTGAGATAGATAGATA 59.128 47.826 29.41 0.00 45.57 1.98
859 886 2.833533 TTGTGTGCACTTGGCTCGC 61.834 57.895 19.41 0.00 45.15 5.03
909 941 2.625790 CTGATGGAGTCCTACTGGCTAC 59.374 54.545 11.33 0.00 0.00 3.58
941 975 1.995626 CGGAGAGGTGGGTGGGATT 60.996 63.158 0.00 0.00 0.00 3.01
971 1005 4.704833 GCACTGCCTGGGCTTCGA 62.705 66.667 13.05 0.00 43.01 3.71
1076 1117 0.931005 GAACATGGCGAAGACGGATC 59.069 55.000 0.00 0.00 41.59 3.36
1189 1279 1.097547 ACACACAGACACAGCAAGCC 61.098 55.000 0.00 0.00 0.00 4.35
1236 1334 5.477607 TCCAAGAAACGATTACTGAAGGA 57.522 39.130 0.00 0.00 0.00 3.36
1237 1335 5.643777 ACATCCAAGAAACGATTACTGAAGG 59.356 40.000 0.00 0.00 0.00 3.46
1261 1359 1.057851 AAAACACACGGAGGGGAGGA 61.058 55.000 0.00 0.00 0.00 3.71
1392 1510 2.861147 AGGCTTCTGTACAGGAAACC 57.139 50.000 22.48 17.31 31.30 3.27
1405 1523 1.964552 ACAGCATGCATCTAGGCTTC 58.035 50.000 21.98 0.00 42.53 3.86
1442 1564 4.020928 TGGCATGATGCTGAATGAAAAAGT 60.021 37.500 17.84 0.00 44.28 2.66
1443 1565 4.500127 TGGCATGATGCTGAATGAAAAAG 58.500 39.130 17.84 0.00 44.28 2.27
1448 1570 2.809696 CGTATGGCATGATGCTGAATGA 59.190 45.455 17.84 0.00 44.28 2.57
1469 1591 7.807977 TCTAAGATAAATTGGGCAGTGATTC 57.192 36.000 0.00 0.00 0.00 2.52
1595 1978 2.149578 CTCCTCTGTTTTGGTCTGCTG 58.850 52.381 0.00 0.00 0.00 4.41
1689 2111 0.744414 AAACACGCATCTCCCATCGG 60.744 55.000 0.00 0.00 0.00 4.18
1697 2119 3.115554 GCTTCAACAAAAACACGCATCT 58.884 40.909 0.00 0.00 0.00 2.90
1698 2120 3.061006 CAGCTTCAACAAAAACACGCATC 60.061 43.478 0.00 0.00 0.00 3.91
1703 2125 1.933181 GGGCAGCTTCAACAAAAACAC 59.067 47.619 0.00 0.00 0.00 3.32
1786 2256 7.142306 AGTTTTACTCGGAAAAATTCTAGGC 57.858 36.000 0.00 0.00 30.36 3.93
1837 2307 1.002134 CCTGCCGGGAACTCAACAT 60.002 57.895 2.18 0.00 37.23 2.71
1868 2363 4.690280 CCCATTTTTGAACAAGTATGGTGC 59.310 41.667 18.96 0.00 34.22 5.01
1907 2402 8.868916 ACAAAATCACATACACAAAGAAAACAC 58.131 29.630 0.00 0.00 0.00 3.32
1918 2413 4.404507 ACGCTGACAAAATCACATACAC 57.595 40.909 0.00 0.00 32.37 2.90
1927 2422 4.746115 TCTTTACACGTACGCTGACAAAAT 59.254 37.500 16.72 0.00 0.00 1.82
1930 2425 3.352554 TCTTTACACGTACGCTGACAA 57.647 42.857 16.72 9.58 0.00 3.18
2038 2538 3.303593 GCAGTCAAGACAAGTCACATGTG 60.304 47.826 20.18 20.18 0.00 3.21
2070 2580 2.524569 TAAATCATCGGCGCTCATCA 57.475 45.000 7.64 0.00 0.00 3.07
2123 2633 6.149474 ACACATTTTAGACCTATGCAGTTCAC 59.851 38.462 0.00 0.00 0.00 3.18
2135 2645 7.656137 TGAAGAGTAGTCAACACATTTTAGACC 59.344 37.037 0.00 0.00 0.00 3.85
2140 2651 8.682936 ATTCTGAAGAGTAGTCAACACATTTT 57.317 30.769 0.00 0.00 0.00 1.82
2206 2724 3.070734 AGCTGCAGGAGACCATAATACAG 59.929 47.826 17.12 0.00 0.00 2.74
2306 2830 1.135972 CGGTGCGTGAAGATCCTTTTG 60.136 52.381 0.00 0.00 0.00 2.44
2393 2917 3.694535 ACTAATTCAGACGTAGCTCCG 57.305 47.619 0.00 0.00 0.00 4.63
2488 3020 0.888619 AAGTTCGATCGAGCACCTGA 59.111 50.000 29.72 7.01 0.00 3.86
2489 3021 1.391485 CAAAGTTCGATCGAGCACCTG 59.609 52.381 29.72 19.82 0.00 4.00
2499 3128 0.788391 GTTCGTCGGCAAAGTTCGAT 59.212 50.000 0.00 0.00 37.73 3.59
2515 3144 4.691216 CCTTTGCTAACTACCTGACAGTTC 59.309 45.833 0.93 0.00 37.42 3.01
2518 3147 4.021016 AGACCTTTGCTAACTACCTGACAG 60.021 45.833 0.00 0.00 0.00 3.51
2520 3149 4.538746 AGACCTTTGCTAACTACCTGAC 57.461 45.455 0.00 0.00 0.00 3.51
2523 3152 6.195700 TCAGATAGACCTTTGCTAACTACCT 58.804 40.000 0.00 0.00 0.00 3.08
2524 3153 6.097129 ACTCAGATAGACCTTTGCTAACTACC 59.903 42.308 0.00 0.00 0.00 3.18
2525 3154 6.975772 CACTCAGATAGACCTTTGCTAACTAC 59.024 42.308 0.00 0.00 0.00 2.73
2526 3155 6.890268 TCACTCAGATAGACCTTTGCTAACTA 59.110 38.462 0.00 0.00 0.00 2.24
2527 3156 5.717178 TCACTCAGATAGACCTTTGCTAACT 59.283 40.000 0.00 0.00 0.00 2.24
2529 3158 6.381133 TGATCACTCAGATAGACCTTTGCTAA 59.619 38.462 0.00 0.00 37.00 3.09
2530 3159 5.893824 TGATCACTCAGATAGACCTTTGCTA 59.106 40.000 0.00 0.00 37.00 3.49
2531 3160 4.713814 TGATCACTCAGATAGACCTTTGCT 59.286 41.667 0.00 0.00 37.00 3.91
2532 3161 4.808364 GTGATCACTCAGATAGACCTTTGC 59.192 45.833 18.83 0.00 37.00 3.68
2559 3235 1.215912 CGGCCTGCAATGCATTCAA 59.784 52.632 8.91 0.00 38.13 2.69
2639 3315 2.304180 CCCCTCACAGAAGTTCACATCT 59.696 50.000 5.50 0.00 0.00 2.90
2674 3350 1.915614 AAGCGCGAACTGATTGCAGG 61.916 55.000 12.10 0.00 46.60 4.85
2860 3540 0.779997 ACCCTCCTGACAGGCAATTT 59.220 50.000 17.33 0.00 34.61 1.82
2868 3548 3.907474 TGAACTGATTTACCCTCCTGACA 59.093 43.478 0.00 0.00 0.00 3.58
2913 3627 6.869913 CCGGTAACTCAAATCTAACACTAACA 59.130 38.462 0.00 0.00 0.00 2.41
2914 3628 6.183360 GCCGGTAACTCAAATCTAACACTAAC 60.183 42.308 1.90 0.00 0.00 2.34
2915 3629 5.870978 GCCGGTAACTCAAATCTAACACTAA 59.129 40.000 1.90 0.00 0.00 2.24
2916 3630 5.413499 GCCGGTAACTCAAATCTAACACTA 58.587 41.667 1.90 0.00 0.00 2.74
2917 3631 4.251268 GCCGGTAACTCAAATCTAACACT 58.749 43.478 1.90 0.00 0.00 3.55
2918 3632 3.061697 CGCCGGTAACTCAAATCTAACAC 59.938 47.826 1.90 0.00 0.00 3.32
2929 3674 0.175073 ATGAAGGACGCCGGTAACTC 59.825 55.000 1.90 0.00 0.00 3.01
2991 3736 6.270463 TCACCTAAACAGTAACTATTCCACCA 59.730 38.462 0.00 0.00 0.00 4.17
3095 3846 5.187967 ACAGGTACTCTACTCCATCAAAAGG 59.812 44.000 0.00 0.00 34.60 3.11
3117 3868 3.296854 CCCTCTGTGTATACCTGCTACA 58.703 50.000 0.00 0.00 0.00 2.74
3128 3879 1.550130 CCGGCTTTCCCCTCTGTGTA 61.550 60.000 0.00 0.00 0.00 2.90
3129 3880 2.750350 CGGCTTTCCCCTCTGTGT 59.250 61.111 0.00 0.00 0.00 3.72
3172 3953 1.168714 GCGATCTTCAACCCAAAGCT 58.831 50.000 0.00 0.00 0.00 3.74
3189 3970 6.702329 AGTATATGAATCCCTCCTTTTAGCG 58.298 40.000 0.00 0.00 0.00 4.26
3212 3993 4.895961 AGACTAAAAAGAAACGGAGGGAG 58.104 43.478 0.00 0.00 0.00 4.30
3213 3994 4.262765 GGAGACTAAAAAGAAACGGAGGGA 60.263 45.833 0.00 0.00 0.00 4.20
3214 3995 4.001652 GGAGACTAAAAAGAAACGGAGGG 58.998 47.826 0.00 0.00 0.00 4.30
3216 3997 9.595823 TTATATGGAGACTAAAAAGAAACGGAG 57.404 33.333 0.00 0.00 0.00 4.63
3218 3999 9.595823 TCTTATATGGAGACTAAAAAGAAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3230 4011 9.927081 ATTTTGACCAAATCTTATATGGAGACT 57.073 29.630 0.00 0.00 37.66 3.24
3244 4025 5.355596 TGCGAAGTTTGATTTTGACCAAAT 58.644 33.333 0.00 0.00 37.84 2.32
3245 4026 4.748892 TGCGAAGTTTGATTTTGACCAAA 58.251 34.783 0.00 0.00 0.00 3.28
3246 4027 4.377839 TGCGAAGTTTGATTTTGACCAA 57.622 36.364 0.00 0.00 0.00 3.67
3247 4028 4.377839 TTGCGAAGTTTGATTTTGACCA 57.622 36.364 0.00 0.00 0.00 4.02
3248 4029 4.803613 ACTTTGCGAAGTTTGATTTTGACC 59.196 37.500 13.90 0.00 43.48 4.02
3249 4030 5.949233 ACTTTGCGAAGTTTGATTTTGAC 57.051 34.783 13.90 0.00 43.48 3.18
3380 4161 9.601217 GACTAGCTTTGTAGGAAAAGATATCAA 57.399 33.333 5.32 0.00 37.39 2.57
3381 4162 8.758829 TGACTAGCTTTGTAGGAAAAGATATCA 58.241 33.333 5.32 3.18 37.39 2.15
3382 4163 9.255304 CTGACTAGCTTTGTAGGAAAAGATATC 57.745 37.037 0.00 0.00 37.39 1.63
3383 4164 8.982723 TCTGACTAGCTTTGTAGGAAAAGATAT 58.017 33.333 0.00 0.00 37.39 1.63
3384 4165 8.251721 GTCTGACTAGCTTTGTAGGAAAAGATA 58.748 37.037 0.00 0.00 39.12 1.98
3385 4166 7.038658 AGTCTGACTAGCTTTGTAGGAAAAGAT 60.039 37.037 8.91 0.00 39.12 2.40
3386 4167 6.267928 AGTCTGACTAGCTTTGTAGGAAAAGA 59.732 38.462 8.91 0.00 39.12 2.52
3387 4168 6.459923 AGTCTGACTAGCTTTGTAGGAAAAG 58.540 40.000 8.91 0.00 39.66 2.27
3388 4169 6.420913 AGTCTGACTAGCTTTGTAGGAAAA 57.579 37.500 8.91 0.00 0.00 2.29
3389 4170 6.420913 AAGTCTGACTAGCTTTGTAGGAAA 57.579 37.500 11.30 0.00 0.00 3.13
3390 4171 6.420913 AAAGTCTGACTAGCTTTGTAGGAA 57.579 37.500 11.30 0.00 32.70 3.36
3391 4172 6.492429 TGTAAAGTCTGACTAGCTTTGTAGGA 59.508 38.462 11.30 0.00 34.45 2.94
3392 4173 6.688578 TGTAAAGTCTGACTAGCTTTGTAGG 58.311 40.000 11.30 0.00 34.45 3.18
3393 4174 9.509855 CTATGTAAAGTCTGACTAGCTTTGTAG 57.490 37.037 11.30 4.85 34.45 2.74
3394 4175 9.021807 ACTATGTAAAGTCTGACTAGCTTTGTA 57.978 33.333 11.30 0.00 34.45 2.41
3395 4176 7.897864 ACTATGTAAAGTCTGACTAGCTTTGT 58.102 34.615 11.30 6.94 34.45 2.83
3396 4177 8.764524 AACTATGTAAAGTCTGACTAGCTTTG 57.235 34.615 11.30 6.42 34.45 2.77
3397 4178 9.209175 CAAACTATGTAAAGTCTGACTAGCTTT 57.791 33.333 11.30 4.28 35.72 3.51
3398 4179 8.585881 TCAAACTATGTAAAGTCTGACTAGCTT 58.414 33.333 11.30 4.65 0.00 3.74
3399 4180 8.030106 GTCAAACTATGTAAAGTCTGACTAGCT 58.970 37.037 11.30 1.69 41.96 3.32
3400 4181 8.175649 GTCAAACTATGTAAAGTCTGACTAGC 57.824 38.462 11.30 5.14 41.96 3.42
3404 4185 9.042008 TCAAAGTCAAACTATGTAAAGTCTGAC 57.958 33.333 0.00 0.00 44.37 3.51
3405 4186 9.042008 GTCAAAGTCAAACTATGTAAAGTCTGA 57.958 33.333 0.00 0.00 0.00 3.27
3406 4187 8.283291 GGTCAAAGTCAAACTATGTAAAGTCTG 58.717 37.037 0.00 0.00 0.00 3.51
3407 4188 7.990886 TGGTCAAAGTCAAACTATGTAAAGTCT 59.009 33.333 0.00 0.00 0.00 3.24
3408 4189 8.149973 TGGTCAAAGTCAAACTATGTAAAGTC 57.850 34.615 0.00 0.00 0.00 3.01
3409 4190 8.514330 TTGGTCAAAGTCAAACTATGTAAAGT 57.486 30.769 0.00 0.00 0.00 2.66
3410 4191 9.965824 AATTGGTCAAAGTCAAACTATGTAAAG 57.034 29.630 0.00 0.00 0.00 1.85
3411 4192 9.959749 GAATTGGTCAAAGTCAAACTATGTAAA 57.040 29.630 0.00 0.00 33.03 2.01
3412 4193 9.349713 AGAATTGGTCAAAGTCAAACTATGTAA 57.650 29.630 0.00 0.00 35.28 2.41
3413 4194 8.918202 AGAATTGGTCAAAGTCAAACTATGTA 57.082 30.769 0.00 0.00 35.28 2.29
3414 4195 7.823745 AGAATTGGTCAAAGTCAAACTATGT 57.176 32.000 0.00 0.00 35.28 2.29
3419 4200 9.076596 GCATATAAGAATTGGTCAAAGTCAAAC 57.923 33.333 0.00 0.00 35.28 2.93
3420 4201 7.967854 CGCATATAAGAATTGGTCAAAGTCAAA 59.032 33.333 0.00 0.00 35.28 2.69
3421 4202 7.335673 TCGCATATAAGAATTGGTCAAAGTCAA 59.664 33.333 0.00 0.00 35.28 3.18
3422 4203 6.821160 TCGCATATAAGAATTGGTCAAAGTCA 59.179 34.615 0.00 0.00 35.28 3.41
3423 4204 7.246674 TCGCATATAAGAATTGGTCAAAGTC 57.753 36.000 0.00 0.00 32.95 3.01
3424 4205 7.624360 TTCGCATATAAGAATTGGTCAAAGT 57.376 32.000 0.00 0.00 0.00 2.66
3440 4221 9.150348 CCCTTTGTTTCTTTTTAATTCGCATAT 57.850 29.630 0.00 0.00 0.00 1.78
3441 4222 8.361139 TCCCTTTGTTTCTTTTTAATTCGCATA 58.639 29.630 0.00 0.00 0.00 3.14
3442 4223 7.213678 TCCCTTTGTTTCTTTTTAATTCGCAT 58.786 30.769 0.00 0.00 0.00 4.73
3443 4224 6.574350 TCCCTTTGTTTCTTTTTAATTCGCA 58.426 32.000 0.00 0.00 0.00 5.10
3444 4225 6.700081 ACTCCCTTTGTTTCTTTTTAATTCGC 59.300 34.615 0.00 0.00 0.00 4.70
3445 4226 9.908152 ATACTCCCTTTGTTTCTTTTTAATTCG 57.092 29.630 0.00 0.00 0.00 3.34
3449 4230 8.347035 CGACATACTCCCTTTGTTTCTTTTTAA 58.653 33.333 0.00 0.00 0.00 1.52
3450 4231 7.520937 GCGACATACTCCCTTTGTTTCTTTTTA 60.521 37.037 0.00 0.00 0.00 1.52
3451 4232 6.734871 GCGACATACTCCCTTTGTTTCTTTTT 60.735 38.462 0.00 0.00 0.00 1.94
3452 4233 5.278315 GCGACATACTCCCTTTGTTTCTTTT 60.278 40.000 0.00 0.00 0.00 2.27
3453 4234 4.215613 GCGACATACTCCCTTTGTTTCTTT 59.784 41.667 0.00 0.00 0.00 2.52
3454 4235 3.751698 GCGACATACTCCCTTTGTTTCTT 59.248 43.478 0.00 0.00 0.00 2.52
3455 4236 3.244422 TGCGACATACTCCCTTTGTTTCT 60.244 43.478 0.00 0.00 0.00 2.52
3456 4237 3.071479 TGCGACATACTCCCTTTGTTTC 58.929 45.455 0.00 0.00 0.00 2.78
3457 4238 3.134574 TGCGACATACTCCCTTTGTTT 57.865 42.857 0.00 0.00 0.00 2.83
3458 4239 2.851263 TGCGACATACTCCCTTTGTT 57.149 45.000 0.00 0.00 0.00 2.83
3459 4240 3.350219 AATGCGACATACTCCCTTTGT 57.650 42.857 0.00 0.00 0.00 2.83
3460 4241 4.816385 ACATAATGCGACATACTCCCTTTG 59.184 41.667 0.00 0.00 0.00 2.77
3461 4242 4.816385 CACATAATGCGACATACTCCCTTT 59.184 41.667 0.00 0.00 0.00 3.11
3462 4243 4.100963 TCACATAATGCGACATACTCCCTT 59.899 41.667 0.00 0.00 0.00 3.95
3463 4244 3.641436 TCACATAATGCGACATACTCCCT 59.359 43.478 0.00 0.00 0.00 4.20
3464 4245 3.741344 GTCACATAATGCGACATACTCCC 59.259 47.826 0.00 0.00 30.34 4.30
3465 4246 4.368315 TGTCACATAATGCGACATACTCC 58.632 43.478 0.00 0.00 34.85 3.85
3466 4247 5.966636 TTGTCACATAATGCGACATACTC 57.033 39.130 2.97 0.00 38.94 2.59
3467 4248 6.735678 TTTTGTCACATAATGCGACATACT 57.264 33.333 2.97 0.00 38.94 2.12
3468 4249 6.414694 CCATTTTGTCACATAATGCGACATAC 59.585 38.462 13.84 0.00 38.94 2.39
3469 4250 6.493978 CCATTTTGTCACATAATGCGACATA 58.506 36.000 13.84 0.00 38.94 2.29
3470 4251 5.342433 CCATTTTGTCACATAATGCGACAT 58.658 37.500 13.84 0.00 38.94 3.06
3471 4252 4.731720 CCATTTTGTCACATAATGCGACA 58.268 39.130 13.84 0.00 37.62 4.35
3472 4253 3.547468 GCCATTTTGTCACATAATGCGAC 59.453 43.478 13.84 4.05 33.60 5.19
3473 4254 3.730362 CGCCATTTTGTCACATAATGCGA 60.730 43.478 21.47 0.00 36.12 5.10
3474 4255 2.531103 CGCCATTTTGTCACATAATGCG 59.469 45.455 13.84 15.46 33.60 4.73
3475 4256 3.547468 GTCGCCATTTTGTCACATAATGC 59.453 43.478 13.84 9.34 33.60 3.56
3476 4257 4.731720 TGTCGCCATTTTGTCACATAATG 58.268 39.130 12.65 12.65 34.32 1.90
3532 4313 1.164411 TCGCCATTTTGTCGCAGAAT 58.836 45.000 0.00 0.00 39.69 2.40
3591 4372 2.143458 CGTTGTACAAATGCGCCGC 61.143 57.895 10.51 0.00 0.00 6.53
3616 4397 2.431419 TCCCAAAATGGATCGCGTACTA 59.569 45.455 5.77 0.00 40.96 1.82
3646 4427 4.879598 TCTAGAAGGTTTTCAAGACCGTC 58.120 43.478 5.03 5.03 43.31 4.79
3679 4460 5.053978 ACATCAGGAAAGAGAAAACCAGT 57.946 39.130 0.00 0.00 0.00 4.00
3701 4482 4.349365 ACCTGAAAACCAGTGGAAGAAAA 58.651 39.130 18.40 0.00 41.33 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.