Multiple sequence alignment - TraesCS2B01G507200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G507200 chr2B 100.000 2669 0 0 1 2669 703979248 703976580 0.000000e+00 4929
1 TraesCS2B01G507200 chr2B 80.866 439 57 15 1787 2209 703907320 703906893 1.190000e-83 320
2 TraesCS2B01G507200 chr2B 90.076 131 12 1 2503 2632 703906309 703906179 4.570000e-38 169
3 TraesCS2B01G507200 chr2A 88.898 1180 60 31 1008 2163 718572294 718571162 0.000000e+00 1387
4 TraesCS2B01G507200 chr2A 79.960 494 40 21 491 962 718572764 718572308 2.580000e-80 309
5 TraesCS2B01G507200 chr2A 81.754 285 35 9 1 270 718573359 718573077 3.460000e-54 222
6 TraesCS2B01G507200 chr2D 84.493 1193 105 45 1034 2187 584527350 584526199 0.000000e+00 1105
7 TraesCS2B01G507200 chr2D 83.861 316 21 10 642 957 584527671 584527386 9.410000e-70 274
8 TraesCS2B01G507200 chr1A 78.857 525 55 34 961 1461 474260709 474260217 1.200000e-78 303
9 TraesCS2B01G507200 chr1B 79.867 452 54 27 1030 1466 499546791 499546362 2.010000e-76 296


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G507200 chr2B 703976580 703979248 2668 True 4929.000000 4929 100.000000 1 2669 1 chr2B.!!$R1 2668
1 TraesCS2B01G507200 chr2B 703906179 703907320 1141 True 244.500000 320 85.471000 1787 2632 2 chr2B.!!$R2 845
2 TraesCS2B01G507200 chr2A 718571162 718573359 2197 True 639.333333 1387 83.537333 1 2163 3 chr2A.!!$R1 2162
3 TraesCS2B01G507200 chr2D 584526199 584527671 1472 True 689.500000 1105 84.177000 642 2187 2 chr2D.!!$R1 1545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
527 701 0.030092 CCTTCCCTCTATCCCCACCA 60.03 60.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2288 2694 0.094216 CTTGTGATGAACTCGCTGCG 59.906 55.0 17.25 17.25 35.31 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.340950 ACTTGTTGGGTCATCGATGTTTTT 59.659 37.500 24.09 0.00 0.00 1.94
27 28 4.497473 TGTTGGGTCATCGATGTTTTTC 57.503 40.909 24.09 12.22 0.00 2.29
38 39 7.840797 GTCATCGATGTTTTTCAAAACTTTGTG 59.159 33.333 24.09 12.15 46.37 3.33
123 135 3.802139 GGCAACTTGTGTTTCCTTAAAGC 59.198 43.478 0.00 0.00 36.70 3.51
124 136 4.429108 GCAACTTGTGTTTCCTTAAAGCA 58.571 39.130 0.00 0.00 33.52 3.91
127 139 6.037062 GCAACTTGTGTTTCCTTAAAGCAAAT 59.963 34.615 0.00 0.00 33.52 2.32
130 142 8.560355 ACTTGTGTTTCCTTAAAGCAAATTTT 57.440 26.923 0.00 0.00 32.01 1.82
132 144 8.553459 TTGTGTTTCCTTAAAGCAAATTTTCA 57.447 26.923 0.00 0.00 32.01 2.69
133 145 7.969314 TGTGTTTCCTTAAAGCAAATTTTCAC 58.031 30.769 0.00 0.00 32.01 3.18
136 148 9.225436 TGTTTCCTTAAAGCAAATTTTCACTTT 57.775 25.926 12.66 12.66 36.40 2.66
157 169 1.164041 ACTTCGAAAAGTGTGGGCCG 61.164 55.000 0.00 0.00 44.13 6.13
168 181 1.819632 GTGGGCCGATGTCATGGTC 60.820 63.158 0.00 0.00 0.00 4.02
173 186 1.202758 GGCCGATGTCATGGTCCATTA 60.203 52.381 0.00 0.00 0.00 1.90
175 188 2.744202 GCCGATGTCATGGTCCATTATC 59.256 50.000 0.00 6.10 0.00 1.75
184 197 2.088423 TGGTCCATTATCGTTTGTGCC 58.912 47.619 0.00 0.00 0.00 5.01
185 198 1.404035 GGTCCATTATCGTTTGTGCCC 59.596 52.381 0.00 0.00 0.00 5.36
189 202 2.878406 CCATTATCGTTTGTGCCCTAGG 59.122 50.000 0.06 0.06 0.00 3.02
209 223 5.816955 AGGAAGCTAGGATTACAAGGATC 57.183 43.478 0.00 0.00 0.00 3.36
213 227 3.257127 AGCTAGGATTACAAGGATCGAGC 59.743 47.826 0.00 0.00 35.25 5.03
219 233 6.010850 AGGATTACAAGGATCGAGCTGTATA 58.989 40.000 0.00 0.00 0.00 1.47
222 236 7.819900 GGATTACAAGGATCGAGCTGTATATTT 59.180 37.037 0.00 0.00 0.00 1.40
224 238 6.851222 ACAAGGATCGAGCTGTATATTTTG 57.149 37.500 0.00 0.00 0.00 2.44
227 241 7.985184 ACAAGGATCGAGCTGTATATTTTGTAA 59.015 33.333 0.00 0.00 0.00 2.41
229 243 8.594881 AGGATCGAGCTGTATATTTTGTAAAG 57.405 34.615 0.00 0.00 0.00 1.85
231 245 8.704234 GGATCGAGCTGTATATTTTGTAAAGAG 58.296 37.037 0.00 0.00 0.00 2.85
232 246 8.594881 ATCGAGCTGTATATTTTGTAAAGAGG 57.405 34.615 0.00 0.00 0.00 3.69
233 247 7.778083 TCGAGCTGTATATTTTGTAAAGAGGA 58.222 34.615 0.00 0.00 0.00 3.71
234 248 7.705325 TCGAGCTGTATATTTTGTAAAGAGGAC 59.295 37.037 0.00 0.00 0.00 3.85
236 250 9.162764 GAGCTGTATATTTTGTAAAGAGGACAA 57.837 33.333 0.00 0.00 35.03 3.18
237 251 9.515226 AGCTGTATATTTTGTAAAGAGGACAAA 57.485 29.630 0.00 0.00 43.29 2.83
246 262 7.754851 TTGTAAAGAGGACAAAATAACCCTC 57.245 36.000 0.00 0.00 44.14 4.30
289 305 9.995957 AATTTGTTCAAATTTTCTTTTTACGGG 57.004 25.926 15.08 0.00 0.00 5.28
290 306 8.549338 TTTGTTCAAATTTTCTTTTTACGGGT 57.451 26.923 0.00 0.00 0.00 5.28
291 307 9.649167 TTTGTTCAAATTTTCTTTTTACGGGTA 57.351 25.926 0.00 0.00 0.00 3.69
292 308 9.649167 TTGTTCAAATTTTCTTTTTACGGGTAA 57.351 25.926 0.00 0.00 0.00 2.85
293 309 9.819267 TGTTCAAATTTTCTTTTTACGGGTAAT 57.181 25.926 0.00 0.00 0.00 1.89
297 313 9.376171 CAAATTTTCTTTTTACGGGTAATTTGC 57.624 29.630 0.00 0.00 35.95 3.68
298 314 7.661127 ATTTTCTTTTTACGGGTAATTTGCC 57.339 32.000 0.00 0.00 0.00 4.52
299 315 4.787260 TCTTTTTACGGGTAATTTGCCC 57.213 40.909 12.27 12.27 42.68 5.36
300 316 4.409187 TCTTTTTACGGGTAATTTGCCCT 58.591 39.130 18.94 9.61 43.92 5.19
305 321 1.542472 ACGGGTAATTTGCCCTTTTCG 59.458 47.619 18.94 8.83 43.92 3.46
307 323 2.414957 CGGGTAATTTGCCCTTTTCGTC 60.415 50.000 18.94 0.00 43.92 4.20
319 335 5.067936 TGCCCTTTTCGTCTTACAAATTTGA 59.932 36.000 24.64 5.76 0.00 2.69
322 338 7.484959 GCCCTTTTCGTCTTACAAATTTGATAG 59.515 37.037 24.64 18.45 0.00 2.08
333 349 1.512926 ATTTGATAGCGGCGACATCC 58.487 50.000 12.98 0.00 0.00 3.51
341 357 2.261671 GGCGACATCCACACGTCT 59.738 61.111 0.00 0.00 0.00 4.18
344 360 1.335810 GGCGACATCCACACGTCTATA 59.664 52.381 0.00 0.00 0.00 1.31
345 361 2.030185 GGCGACATCCACACGTCTATAT 60.030 50.000 0.00 0.00 0.00 0.86
346 362 3.235195 GCGACATCCACACGTCTATATC 58.765 50.000 0.00 0.00 0.00 1.63
347 363 3.822996 CGACATCCACACGTCTATATCC 58.177 50.000 0.00 0.00 0.00 2.59
348 364 3.252458 CGACATCCACACGTCTATATCCA 59.748 47.826 0.00 0.00 0.00 3.41
350 366 4.945246 ACATCCACACGTCTATATCCAAC 58.055 43.478 0.00 0.00 0.00 3.77
351 367 4.649674 ACATCCACACGTCTATATCCAACT 59.350 41.667 0.00 0.00 0.00 3.16
352 368 5.831525 ACATCCACACGTCTATATCCAACTA 59.168 40.000 0.00 0.00 0.00 2.24
353 369 6.322969 ACATCCACACGTCTATATCCAACTAA 59.677 38.462 0.00 0.00 0.00 2.24
354 370 6.140303 TCCACACGTCTATATCCAACTAAC 57.860 41.667 0.00 0.00 0.00 2.34
356 372 4.974275 CACACGTCTATATCCAACTAACGG 59.026 45.833 0.00 0.00 33.26 4.44
358 374 5.008415 ACACGTCTATATCCAACTAACGGAG 59.992 44.000 0.00 0.00 35.56 4.63
359 375 5.237996 CACGTCTATATCCAACTAACGGAGA 59.762 44.000 0.00 0.00 35.56 3.71
360 376 5.238214 ACGTCTATATCCAACTAACGGAGAC 59.762 44.000 0.00 0.00 35.56 3.36
361 377 5.334724 CGTCTATATCCAACTAACGGAGACC 60.335 48.000 0.00 0.00 35.56 3.85
364 380 1.263356 TCCAACTAACGGAGACCAGG 58.737 55.000 0.00 0.00 0.00 4.45
369 385 4.181578 CAACTAACGGAGACCAGGTATTG 58.818 47.826 0.00 0.00 0.00 1.90
378 394 4.323485 GGAGACCAGGTATTGATCACACAA 60.323 45.833 0.00 0.00 0.00 3.33
382 398 5.324409 ACCAGGTATTGATCACACAAATGT 58.676 37.500 0.00 0.00 40.80 2.71
410 426 4.151689 CGAATTTGGACACGTCATACAAGT 59.848 41.667 0.00 0.00 0.00 3.16
416 432 1.790623 ACACGTCATACAAGTCGTTGC 59.209 47.619 0.00 0.00 37.14 4.17
423 439 1.466025 TACAAGTCGTTGCCCTCCGT 61.466 55.000 0.00 0.00 37.14 4.69
435 451 1.370064 CCTCCGTCCCGTTCTTGTT 59.630 57.895 0.00 0.00 0.00 2.83
447 621 3.423154 CTTGTTGACCCGCTCGCC 61.423 66.667 0.00 0.00 0.00 5.54
448 622 4.243008 TTGTTGACCCGCTCGCCA 62.243 61.111 0.00 0.00 0.00 5.69
449 623 4.980805 TGTTGACCCGCTCGCCAC 62.981 66.667 0.00 0.00 0.00 5.01
463 637 3.403057 CCACCGTGCTCGTCGTTG 61.403 66.667 7.47 0.00 35.01 4.10
464 638 4.059459 CACCGTGCTCGTCGTTGC 62.059 66.667 7.47 6.15 35.01 4.17
465 639 4.578898 ACCGTGCTCGTCGTTGCA 62.579 61.111 7.47 10.54 36.79 4.08
466 640 3.767230 CCGTGCTCGTCGTTGCAG 61.767 66.667 13.88 9.33 40.06 4.41
467 641 4.415501 CGTGCTCGTCGTTGCAGC 62.416 66.667 13.88 6.36 40.06 5.25
468 642 4.415501 GTGCTCGTCGTTGCAGCG 62.416 66.667 17.58 17.58 40.06 5.18
475 649 4.742201 TCGTTGCAGCGCCTCCTC 62.742 66.667 18.88 0.00 0.00 3.71
477 651 3.426568 GTTGCAGCGCCTCCTCAC 61.427 66.667 2.29 0.00 0.00 3.51
478 652 4.704833 TTGCAGCGCCTCCTCACC 62.705 66.667 2.29 0.00 0.00 4.02
485 659 2.583441 CGCCTCCTCACCCTGTCAA 61.583 63.158 0.00 0.00 0.00 3.18
486 660 1.003233 GCCTCCTCACCCTGTCAAC 60.003 63.158 0.00 0.00 0.00 3.18
489 663 0.035458 CTCCTCACCCTGTCAACACC 59.965 60.000 0.00 0.00 0.00 4.16
521 695 0.178958 TCTCGGCCTTCCCTCTATCC 60.179 60.000 0.00 0.00 0.00 2.59
526 700 1.419720 GCCTTCCCTCTATCCCCACC 61.420 65.000 0.00 0.00 0.00 4.61
527 701 0.030092 CCTTCCCTCTATCCCCACCA 60.030 60.000 0.00 0.00 0.00 4.17
569 744 2.432628 CCGCACTCGTCAACCCTC 60.433 66.667 0.00 0.00 0.00 4.30
601 776 4.735132 GTAGCGACGCCACAGCCA 62.735 66.667 17.79 0.00 34.57 4.75
602 777 4.435436 TAGCGACGCCACAGCCAG 62.435 66.667 17.79 0.00 34.57 4.85
633 808 2.093235 CCCCATCTCTGACTTGTTCCTC 60.093 54.545 0.00 0.00 0.00 3.71
638 813 1.270826 CTCTGACTTGTTCCTCGCTCA 59.729 52.381 0.00 0.00 0.00 4.26
695 870 2.050985 GCGTTTGCTCAGTGTGGC 60.051 61.111 4.40 4.40 38.39 5.01
697 872 1.280746 CGTTTGCTCAGTGTGGCTG 59.719 57.895 10.89 0.00 46.34 4.85
737 912 2.450609 TTTCCAGACACCTCGCTAAC 57.549 50.000 0.00 0.00 0.00 2.34
738 913 1.334160 TTCCAGACACCTCGCTAACA 58.666 50.000 0.00 0.00 0.00 2.41
748 923 0.949105 CTCGCTAACAGCAAACCGGT 60.949 55.000 0.00 0.00 42.58 5.28
762 937 4.776322 CGGTCCCATTCGCCAGCA 62.776 66.667 0.00 0.00 0.00 4.41
767 942 1.066929 GTCCCATTCGCCAGCAAAATT 60.067 47.619 0.00 0.00 0.00 1.82
779 954 0.958822 GCAAAATTCACACCCCGTCT 59.041 50.000 0.00 0.00 0.00 4.18
781 956 0.958822 AAAATTCACACCCCGTCTGC 59.041 50.000 0.00 0.00 0.00 4.26
784 959 4.954118 TCACACCCCGTCTGCCCT 62.954 66.667 0.00 0.00 0.00 5.19
785 960 4.394712 CACACCCCGTCTGCCCTC 62.395 72.222 0.00 0.00 0.00 4.30
820 1034 3.739613 GGGCCACCTTTCCCGGAT 61.740 66.667 0.73 0.00 32.00 4.18
821 1035 2.440247 GGCCACCTTTCCCGGATG 60.440 66.667 0.73 0.00 0.00 3.51
884 1098 4.394712 CCGCGCCTTCCTTCCTGT 62.395 66.667 0.00 0.00 0.00 4.00
890 1104 1.153349 CCTTCCTTCCTGTAGCGCC 60.153 63.158 2.29 0.00 0.00 6.53
891 1105 1.519455 CTTCCTTCCTGTAGCGCCG 60.519 63.158 2.29 0.00 0.00 6.46
896 1110 1.338973 CCTTCCTGTAGCGCCGTATAA 59.661 52.381 2.29 0.00 0.00 0.98
961 1175 3.840831 GCCCAAGCAAAGAATTCCC 57.159 52.632 0.65 0.00 39.53 3.97
962 1176 0.975887 GCCCAAGCAAAGAATTCCCA 59.024 50.000 0.65 0.00 39.53 4.37
963 1177 1.066645 GCCCAAGCAAAGAATTCCCAG 60.067 52.381 0.65 0.00 39.53 4.45
964 1178 1.066645 CCCAAGCAAAGAATTCCCAGC 60.067 52.381 0.65 3.69 0.00 4.85
965 1179 1.066645 CCAAGCAAAGAATTCCCAGCC 60.067 52.381 0.65 0.00 0.00 4.85
966 1180 1.897802 CAAGCAAAGAATTCCCAGCCT 59.102 47.619 0.65 0.00 0.00 4.58
967 1181 2.301009 CAAGCAAAGAATTCCCAGCCTT 59.699 45.455 0.65 0.00 0.00 4.35
968 1182 2.174360 AGCAAAGAATTCCCAGCCTTC 58.826 47.619 0.65 0.00 0.00 3.46
969 1183 1.895131 GCAAAGAATTCCCAGCCTTCA 59.105 47.619 0.65 0.00 0.00 3.02
970 1184 2.353109 GCAAAGAATTCCCAGCCTTCAC 60.353 50.000 0.65 0.00 0.00 3.18
971 1185 2.892852 CAAAGAATTCCCAGCCTTCACA 59.107 45.455 0.65 0.00 0.00 3.58
972 1186 2.206576 AGAATTCCCAGCCTTCACAC 57.793 50.000 0.65 0.00 0.00 3.82
973 1187 1.177401 GAATTCCCAGCCTTCACACC 58.823 55.000 0.00 0.00 0.00 4.16
974 1188 0.779997 AATTCCCAGCCTTCACACCT 59.220 50.000 0.00 0.00 0.00 4.00
975 1189 0.329596 ATTCCCAGCCTTCACACCTC 59.670 55.000 0.00 0.00 0.00 3.85
976 1190 0.768221 TTCCCAGCCTTCACACCTCT 60.768 55.000 0.00 0.00 0.00 3.69
985 1199 3.775654 CACACCTCTCCCCCTCGC 61.776 72.222 0.00 0.00 0.00 5.03
986 1200 3.999285 ACACCTCTCCCCCTCGCT 61.999 66.667 0.00 0.00 0.00 4.93
1004 1218 2.363795 CCGTCCCTACCAGCCAGA 60.364 66.667 0.00 0.00 0.00 3.86
1005 1219 2.427245 CCGTCCCTACCAGCCAGAG 61.427 68.421 0.00 0.00 0.00 3.35
1007 1221 1.001760 GTCCCTACCAGCCAGAGGA 59.998 63.158 0.00 0.00 31.45 3.71
1008 1222 1.045911 GTCCCTACCAGCCAGAGGAG 61.046 65.000 0.00 0.00 31.45 3.69
1022 1236 0.043485 GAGGAGGAGGAGGGGAAAGT 59.957 60.000 0.00 0.00 0.00 2.66
1229 1450 2.122768 CTCACCTGCCTTCTCCCTAAT 58.877 52.381 0.00 0.00 0.00 1.73
1249 1470 4.179599 CTCCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1575 1825 1.135731 CGCCGCCGAATTTTTGCTA 59.864 52.632 0.00 0.00 36.29 3.49
1576 1826 1.131618 CGCCGCCGAATTTTTGCTAC 61.132 55.000 0.00 0.00 36.29 3.58
1577 1827 0.170339 GCCGCCGAATTTTTGCTACT 59.830 50.000 0.00 0.00 0.00 2.57
1599 1849 7.981102 ACTACTAGGACAAATTGAGGTTTTC 57.019 36.000 0.00 0.00 0.00 2.29
1610 1860 7.389330 ACAAATTGAGGTTTTCCGTTTCTTTTT 59.611 29.630 0.00 0.00 46.35 1.94
1611 1861 7.534085 AATTGAGGTTTTCCGTTTCTTTTTC 57.466 32.000 0.00 0.00 46.35 2.29
1612 1862 5.907866 TGAGGTTTTCCGTTTCTTTTTCT 57.092 34.783 0.00 0.00 46.35 2.52
1618 1868 5.925506 TTTCCGTTTCTTTTTCTCCCTTT 57.074 34.783 0.00 0.00 0.00 3.11
1619 1869 5.925506 TTCCGTTTCTTTTTCTCCCTTTT 57.074 34.783 0.00 0.00 0.00 2.27
1620 1870 5.257082 TCCGTTTCTTTTTCTCCCTTTTG 57.743 39.130 0.00 0.00 0.00 2.44
1632 1882 4.536765 TCTCCCTTTTGTTTCTCTTTGCT 58.463 39.130 0.00 0.00 0.00 3.91
1664 1915 3.928727 TCGTCCTATTGTTGTCGAGTT 57.071 42.857 0.00 0.00 0.00 3.01
1676 1927 4.143200 TGTTGTCGAGTTATGCGATTGAAC 60.143 41.667 0.00 0.00 40.19 3.18
1683 1934 4.323417 AGTTATGCGATTGAACTGGAACA 58.677 39.130 0.00 0.00 32.25 3.18
1734 1987 4.970662 ATGTACTTGTGCTAGCATTTGG 57.029 40.909 22.51 13.59 0.00 3.28
1764 2017 2.615447 CCGATCTGTTATGCAAGCATGT 59.385 45.455 17.26 0.00 37.82 3.21
1860 2122 1.228367 CTGCTTGTGGTTGGCCTCT 60.228 57.895 3.32 0.00 35.27 3.69
1875 2137 1.340114 GCCTCTTTCCGGAATTGTCCT 60.340 52.381 19.62 0.00 42.44 3.85
1922 2184 2.029739 TCACATGGCTCAATGTTTGCAG 60.030 45.455 0.00 0.00 38.75 4.41
2081 2355 1.141234 GCTCCTTCCTTACCGTCCG 59.859 63.158 0.00 0.00 0.00 4.79
2106 2380 2.083774 TCCTTGCAGATTTGGCTAACG 58.916 47.619 0.00 0.00 0.00 3.18
2112 2386 4.009675 TGCAGATTTGGCTAACGATTTCT 58.990 39.130 0.00 0.00 0.00 2.52
2123 2397 5.404066 GGCTAACGATTTCTAGCTCATCTTC 59.596 44.000 0.00 0.00 40.37 2.87
2126 2400 4.688021 ACGATTTCTAGCTCATCTTCACC 58.312 43.478 0.00 0.00 0.00 4.02
2142 2421 7.444183 TCATCTTCACCTGTTTTCGTTTTCTAT 59.556 33.333 0.00 0.00 0.00 1.98
2164 2443 8.068380 TCTATCACAAGTAGAATTCGTGTATCG 58.932 37.037 0.00 0.00 41.41 2.92
2165 2444 4.796830 TCACAAGTAGAATTCGTGTATCGC 59.203 41.667 0.00 0.00 39.67 4.58
2166 2445 4.561213 CACAAGTAGAATTCGTGTATCGCA 59.439 41.667 0.00 0.00 39.67 5.10
2171 2450 6.967135 AGTAGAATTCGTGTATCGCATCTTA 58.033 36.000 0.00 0.00 39.67 2.10
2192 2474 1.350193 AGCGTGCACTCGTAGATTTG 58.650 50.000 16.19 0.00 33.89 2.32
2203 2485 5.005779 CACTCGTAGATTTGTATGACCAAGC 59.994 44.000 0.00 0.00 33.89 4.01
2219 2501 3.308438 CAAGCTTTGGTTGGATGAAGG 57.692 47.619 0.00 0.00 37.38 3.46
2220 2502 2.892852 CAAGCTTTGGTTGGATGAAGGA 59.107 45.455 0.00 0.00 37.38 3.36
2221 2503 2.519013 AGCTTTGGTTGGATGAAGGAC 58.481 47.619 0.00 0.00 0.00 3.85
2224 2506 3.259123 GCTTTGGTTGGATGAAGGACAAT 59.741 43.478 0.00 0.00 0.00 2.71
2225 2507 4.462483 GCTTTGGTTGGATGAAGGACAATA 59.538 41.667 0.00 0.00 0.00 1.90
2226 2508 5.127682 GCTTTGGTTGGATGAAGGACAATAT 59.872 40.000 0.00 0.00 0.00 1.28
2227 2509 6.528537 TTTGGTTGGATGAAGGACAATATG 57.471 37.500 0.00 0.00 0.00 1.78
2228 2510 3.953612 TGGTTGGATGAAGGACAATATGC 59.046 43.478 0.00 0.00 0.00 3.14
2229 2511 4.210331 GGTTGGATGAAGGACAATATGCT 58.790 43.478 0.00 0.00 0.00 3.79
2230 2512 5.104151 TGGTTGGATGAAGGACAATATGCTA 60.104 40.000 0.00 0.00 0.00 3.49
2235 2517 8.664669 TGGATGAAGGACAATATGCTAGTATA 57.335 34.615 2.80 2.80 0.00 1.47
2269 2675 9.944376 ATAGTACAATCCATATTAATTGACGCT 57.056 29.630 11.87 9.14 36.57 5.07
2270 2676 8.087982 AGTACAATCCATATTAATTGACGCTG 57.912 34.615 11.87 0.00 36.57 5.18
2271 2677 5.762045 ACAATCCATATTAATTGACGCTGC 58.238 37.500 11.87 0.00 36.57 5.25
2272 2678 5.532406 ACAATCCATATTAATTGACGCTGCT 59.468 36.000 11.87 0.00 36.57 4.24
2274 2680 5.673337 TCCATATTAATTGACGCTGCTTC 57.327 39.130 0.00 0.00 0.00 3.86
2275 2681 5.122519 TCCATATTAATTGACGCTGCTTCA 58.877 37.500 4.56 4.56 0.00 3.02
2276 2682 5.588246 TCCATATTAATTGACGCTGCTTCAA 59.412 36.000 21.45 21.45 37.38 2.69
2277 2683 6.262944 TCCATATTAATTGACGCTGCTTCAAT 59.737 34.615 23.64 23.64 44.00 2.57
2281 2687 2.900122 TTGACGCTGCTTCAATTAGC 57.100 45.000 16.40 0.00 41.59 3.09
2282 2688 3.191162 AATTGACGCTGCTTCAATTAGCA 59.809 39.130 32.62 10.89 46.90 3.49
2290 2696 4.472691 TGCTTCAATTAGCATACATCGC 57.527 40.909 0.00 0.00 45.72 4.58
2293 2699 4.461405 CTTCAATTAGCATACATCGCAGC 58.539 43.478 0.00 0.00 0.00 5.25
2294 2700 2.476241 TCAATTAGCATACATCGCAGCG 59.524 45.455 9.06 9.06 0.00 5.18
2295 2701 2.438868 ATTAGCATACATCGCAGCGA 57.561 45.000 22.06 22.06 41.13 4.93
2296 2702 1.770957 TTAGCATACATCGCAGCGAG 58.229 50.000 24.08 16.80 39.91 5.03
2297 2703 0.668535 TAGCATACATCGCAGCGAGT 59.331 50.000 24.08 21.23 39.91 4.18
2298 2704 0.179100 AGCATACATCGCAGCGAGTT 60.179 50.000 24.08 14.47 39.91 3.01
2300 2706 1.559831 CATACATCGCAGCGAGTTCA 58.440 50.000 24.08 8.56 39.91 3.18
2301 2707 2.130395 CATACATCGCAGCGAGTTCAT 58.870 47.619 24.08 10.52 39.91 2.57
2302 2708 1.840181 TACATCGCAGCGAGTTCATC 58.160 50.000 24.08 0.00 39.91 2.92
2303 2709 0.108662 ACATCGCAGCGAGTTCATCA 60.109 50.000 24.08 0.00 39.91 3.07
2304 2710 0.299895 CATCGCAGCGAGTTCATCAC 59.700 55.000 24.08 0.00 39.91 3.06
2305 2711 0.108662 ATCGCAGCGAGTTCATCACA 60.109 50.000 24.08 0.00 39.91 3.58
2307 2713 0.094216 CGCAGCGAGTTCATCACAAG 59.906 55.000 9.98 0.00 0.00 3.16
2308 2714 0.445436 GCAGCGAGTTCATCACAAGG 59.555 55.000 0.00 0.00 0.00 3.61
2309 2715 1.941209 GCAGCGAGTTCATCACAAGGA 60.941 52.381 0.00 0.00 0.00 3.36
2310 2716 1.998315 CAGCGAGTTCATCACAAGGAG 59.002 52.381 0.00 0.00 0.00 3.69
2311 2717 1.620819 AGCGAGTTCATCACAAGGAGT 59.379 47.619 0.00 0.00 0.00 3.85
2313 2719 2.610479 GCGAGTTCATCACAAGGAGTCA 60.610 50.000 0.00 0.00 0.00 3.41
2315 2721 3.677121 CGAGTTCATCACAAGGAGTCAAG 59.323 47.826 0.00 0.00 0.00 3.02
2316 2722 3.999663 GAGTTCATCACAAGGAGTCAAGG 59.000 47.826 0.00 0.00 0.00 3.61
2317 2723 3.648067 AGTTCATCACAAGGAGTCAAGGA 59.352 43.478 0.00 0.00 0.00 3.36
2325 2903 3.711704 ACAAGGAGTCAAGGAGAGAACAA 59.288 43.478 0.00 0.00 0.00 2.83
2334 2912 5.752955 GTCAAGGAGAGAACAATCTGCTATC 59.247 44.000 0.00 0.00 46.07 2.08
2335 2913 5.423290 TCAAGGAGAGAACAATCTGCTATCA 59.577 40.000 0.00 0.00 46.07 2.15
2340 2918 6.257630 GGAGAGAACAATCTGCTATCAAGTTC 59.742 42.308 0.00 0.00 35.54 3.01
2362 2941 9.383519 AGTTCATAATACAATAGATATTGGCGG 57.616 33.333 15.17 1.84 45.54 6.13
2364 2943 7.279615 TCATAATACAATAGATATTGGCGGGG 58.720 38.462 15.17 3.09 45.54 5.73
2366 2945 3.140325 ACAATAGATATTGGCGGGGTG 57.860 47.619 15.17 0.00 45.54 4.61
2367 2946 2.441750 ACAATAGATATTGGCGGGGTGT 59.558 45.455 15.17 0.00 45.54 4.16
2369 2948 4.253685 CAATAGATATTGGCGGGGTGTAG 58.746 47.826 4.91 0.00 39.42 2.74
2370 2949 1.802553 AGATATTGGCGGGGTGTAGT 58.197 50.000 0.00 0.00 0.00 2.73
2371 2950 2.966915 AGATATTGGCGGGGTGTAGTA 58.033 47.619 0.00 0.00 0.00 1.82
2372 2951 3.517612 AGATATTGGCGGGGTGTAGTAT 58.482 45.455 0.00 0.00 0.00 2.12
2373 2952 3.260884 AGATATTGGCGGGGTGTAGTATG 59.739 47.826 0.00 0.00 0.00 2.39
2377 2956 1.841277 TGGCGGGGTGTAGTATGAAAT 59.159 47.619 0.00 0.00 0.00 2.17
2382 2961 4.119862 CGGGGTGTAGTATGAAATGTGAG 58.880 47.826 0.00 0.00 0.00 3.51
2384 2963 5.497474 GGGGTGTAGTATGAAATGTGAGTT 58.503 41.667 0.00 0.00 0.00 3.01
2386 2965 6.128007 GGGGTGTAGTATGAAATGTGAGTTTG 60.128 42.308 0.00 0.00 0.00 2.93
2391 2970 6.331369 AGTATGAAATGTGAGTTTGGGTTG 57.669 37.500 0.00 0.00 0.00 3.77
2393 2972 3.370104 TGAAATGTGAGTTTGGGTTGGT 58.630 40.909 0.00 0.00 0.00 3.67
2395 2974 4.339814 TGAAATGTGAGTTTGGGTTGGTAC 59.660 41.667 0.00 0.00 0.00 3.34
2419 3024 6.587226 ACAATTCCACATCATGTTTCATTTCG 59.413 34.615 0.00 0.00 0.00 3.46
2420 3025 5.956068 TTCCACATCATGTTTCATTTCGA 57.044 34.783 0.00 0.00 0.00 3.71
2421 3026 5.550232 TCCACATCATGTTTCATTTCGAG 57.450 39.130 0.00 0.00 0.00 4.04
2422 3027 4.395854 TCCACATCATGTTTCATTTCGAGG 59.604 41.667 0.00 0.00 0.00 4.63
2429 3034 5.879777 TCATGTTTCATTTCGAGGCTATCAA 59.120 36.000 0.00 0.00 0.00 2.57
2432 3037 6.554419 TGTTTCATTTCGAGGCTATCAAATG 58.446 36.000 14.68 14.68 37.54 2.32
2433 3038 4.818534 TCATTTCGAGGCTATCAAATGC 57.181 40.909 15.51 0.00 36.90 3.56
2434 3039 4.198530 TCATTTCGAGGCTATCAAATGCA 58.801 39.130 15.51 0.00 36.90 3.96
2435 3040 4.274214 TCATTTCGAGGCTATCAAATGCAG 59.726 41.667 15.51 0.41 36.90 4.41
2437 3042 4.400529 TTCGAGGCTATCAAATGCAGTA 57.599 40.909 0.00 0.00 0.00 2.74
2438 3043 3.982475 TCGAGGCTATCAAATGCAGTAG 58.018 45.455 0.00 0.00 0.00 2.57
2439 3044 2.478134 CGAGGCTATCAAATGCAGTAGC 59.522 50.000 0.00 0.00 38.98 3.58
2453 3058 2.854777 GCAGTAGCATGTCTAGTTCACG 59.145 50.000 0.00 0.00 41.58 4.35
2457 3062 1.204941 AGCATGTCTAGTTCACGGACC 59.795 52.381 0.00 0.00 0.00 4.46
2458 3063 1.909376 CATGTCTAGTTCACGGACCG 58.091 55.000 13.61 13.61 0.00 4.79
2485 3090 4.858850 TGAATGCATCCCAGAACATTAGT 58.141 39.130 0.00 0.00 33.07 2.24
2486 3091 4.883585 TGAATGCATCCCAGAACATTAGTC 59.116 41.667 0.00 0.00 33.07 2.59
2487 3092 3.998913 TGCATCCCAGAACATTAGTCA 57.001 42.857 0.00 0.00 0.00 3.41
2488 3093 4.508551 TGCATCCCAGAACATTAGTCAT 57.491 40.909 0.00 0.00 0.00 3.06
2489 3094 4.454678 TGCATCCCAGAACATTAGTCATC 58.545 43.478 0.00 0.00 0.00 2.92
2490 3095 3.817647 GCATCCCAGAACATTAGTCATCC 59.182 47.826 0.00 0.00 0.00 3.51
2491 3096 4.445448 GCATCCCAGAACATTAGTCATCCT 60.445 45.833 0.00 0.00 0.00 3.24
2492 3097 5.303971 CATCCCAGAACATTAGTCATCCTC 58.696 45.833 0.00 0.00 0.00 3.71
2493 3098 3.384789 TCCCAGAACATTAGTCATCCTCG 59.615 47.826 0.00 0.00 0.00 4.63
2494 3099 3.133003 CCCAGAACATTAGTCATCCTCGT 59.867 47.826 0.00 0.00 0.00 4.18
2495 3100 4.341235 CCCAGAACATTAGTCATCCTCGTA 59.659 45.833 0.00 0.00 0.00 3.43
2496 3101 5.011125 CCCAGAACATTAGTCATCCTCGTAT 59.989 44.000 0.00 0.00 0.00 3.06
2497 3102 6.153067 CCAGAACATTAGTCATCCTCGTATC 58.847 44.000 0.00 0.00 0.00 2.24
2498 3103 6.015856 CCAGAACATTAGTCATCCTCGTATCT 60.016 42.308 0.00 0.00 0.00 1.98
2499 3104 7.081349 CAGAACATTAGTCATCCTCGTATCTC 58.919 42.308 0.00 0.00 0.00 2.75
2500 3105 7.001674 AGAACATTAGTCATCCTCGTATCTCT 58.998 38.462 0.00 0.00 0.00 3.10
2501 3106 7.504238 AGAACATTAGTCATCCTCGTATCTCTT 59.496 37.037 0.00 0.00 0.00 2.85
2502 3107 7.209471 ACATTAGTCATCCTCGTATCTCTTC 57.791 40.000 0.00 0.00 0.00 2.87
2503 3108 6.773200 ACATTAGTCATCCTCGTATCTCTTCA 59.227 38.462 0.00 0.00 0.00 3.02
2504 3109 7.450014 ACATTAGTCATCCTCGTATCTCTTCAT 59.550 37.037 0.00 0.00 0.00 2.57
2505 3110 7.825331 TTAGTCATCCTCGTATCTCTTCATT 57.175 36.000 0.00 0.00 0.00 2.57
2506 3111 6.325919 AGTCATCCTCGTATCTCTTCATTC 57.674 41.667 0.00 0.00 0.00 2.67
2507 3112 6.068010 AGTCATCCTCGTATCTCTTCATTCT 58.932 40.000 0.00 0.00 0.00 2.40
2508 3113 7.227873 AGTCATCCTCGTATCTCTTCATTCTA 58.772 38.462 0.00 0.00 0.00 2.10
2511 3116 8.353684 TCATCCTCGTATCTCTTCATTCTAAAC 58.646 37.037 0.00 0.00 0.00 2.01
2519 3124 9.323985 GTATCTCTTCATTCTAAACTGAGCATT 57.676 33.333 0.00 0.00 0.00 3.56
2562 3168 4.003648 GTCACTCCAAGGAATTCATTCGT 58.996 43.478 7.93 0.85 37.67 3.85
2563 3169 4.455877 GTCACTCCAAGGAATTCATTCGTT 59.544 41.667 7.93 2.32 43.29 3.85
2575 3181 6.768381 GGAATTCATTCGTTCTTCTAGGGATT 59.232 38.462 7.93 0.00 37.67 3.01
2605 3211 4.217118 AGAATGACCATGTCTTGCAGAAAC 59.783 41.667 0.00 0.00 33.15 2.78
2621 3227 4.990257 CAGAAACTGCATTATTGGACTGG 58.010 43.478 0.00 0.00 0.00 4.00
2624 3230 4.307032 AACTGCATTATTGGACTGGAGT 57.693 40.909 0.00 0.00 42.42 3.85
2626 3232 4.770795 ACTGCATTATTGGACTGGAGTAC 58.229 43.478 0.00 0.00 39.41 2.73
2632 3238 3.484953 ATTGGACTGGAGTACCCTACA 57.515 47.619 0.00 0.00 35.38 2.74
2633 3239 3.484953 TTGGACTGGAGTACCCTACAT 57.515 47.619 0.00 0.00 28.79 2.29
2634 3240 4.613265 TTGGACTGGAGTACCCTACATA 57.387 45.455 0.00 0.00 28.79 2.29
2635 3241 4.613265 TGGACTGGAGTACCCTACATAA 57.387 45.455 0.00 0.00 28.79 1.90
2636 3242 4.284178 TGGACTGGAGTACCCTACATAAC 58.716 47.826 0.00 0.00 28.79 1.89
2637 3243 4.264487 TGGACTGGAGTACCCTACATAACA 60.264 45.833 0.00 0.00 28.79 2.41
2638 3244 4.713321 GGACTGGAGTACCCTACATAACAA 59.287 45.833 0.00 0.00 28.79 2.83
2639 3245 5.188359 GGACTGGAGTACCCTACATAACAAA 59.812 44.000 0.00 0.00 28.79 2.83
2640 3246 6.296030 GGACTGGAGTACCCTACATAACAAAA 60.296 42.308 0.00 0.00 28.79 2.44
2641 3247 6.470278 ACTGGAGTACCCTACATAACAAAAC 58.530 40.000 0.00 0.00 28.79 2.43
2642 3248 5.481105 TGGAGTACCCTACATAACAAAACG 58.519 41.667 0.00 0.00 35.38 3.60
2643 3249 4.872124 GGAGTACCCTACATAACAAAACGG 59.128 45.833 0.00 0.00 0.00 4.44
2644 3250 5.337491 GGAGTACCCTACATAACAAAACGGA 60.337 44.000 0.00 0.00 0.00 4.69
2645 3251 6.303903 AGTACCCTACATAACAAAACGGAT 57.696 37.500 0.00 0.00 0.00 4.18
2646 3252 6.714278 AGTACCCTACATAACAAAACGGATT 58.286 36.000 0.00 0.00 0.00 3.01
2647 3253 6.820152 AGTACCCTACATAACAAAACGGATTC 59.180 38.462 0.00 0.00 0.00 2.52
2648 3254 5.812286 ACCCTACATAACAAAACGGATTCT 58.188 37.500 0.00 0.00 0.00 2.40
2649 3255 6.243148 ACCCTACATAACAAAACGGATTCTT 58.757 36.000 0.00 0.00 0.00 2.52
2650 3256 6.150474 ACCCTACATAACAAAACGGATTCTTG 59.850 38.462 0.00 0.00 0.00 3.02
2651 3257 6.150474 CCCTACATAACAAAACGGATTCTTGT 59.850 38.462 0.00 0.00 34.81 3.16
2652 3258 7.021196 CCTACATAACAAAACGGATTCTTGTG 58.979 38.462 0.00 0.00 33.67 3.33
2653 3259 5.219633 ACATAACAAAACGGATTCTTGTGC 58.780 37.500 0.00 0.00 33.67 4.57
2654 3260 5.009610 ACATAACAAAACGGATTCTTGTGCT 59.990 36.000 0.00 0.00 33.67 4.40
2655 3261 6.205853 ACATAACAAAACGGATTCTTGTGCTA 59.794 34.615 0.00 0.00 33.67 3.49
2656 3262 5.508200 AACAAAACGGATTCTTGTGCTAA 57.492 34.783 0.00 0.00 33.67 3.09
2657 3263 5.508200 ACAAAACGGATTCTTGTGCTAAA 57.492 34.783 0.00 0.00 32.19 1.85
2658 3264 5.278604 ACAAAACGGATTCTTGTGCTAAAC 58.721 37.500 0.00 0.00 32.19 2.01
2659 3265 3.806316 AACGGATTCTTGTGCTAAACG 57.194 42.857 0.00 0.00 0.00 3.60
2660 3266 3.034721 ACGGATTCTTGTGCTAAACGA 57.965 42.857 0.00 0.00 0.00 3.85
2661 3267 2.735134 ACGGATTCTTGTGCTAAACGAC 59.265 45.455 0.00 0.00 0.00 4.34
2662 3268 2.093783 CGGATTCTTGTGCTAAACGACC 59.906 50.000 0.00 0.00 0.00 4.79
2663 3269 2.093783 GGATTCTTGTGCTAAACGACCG 59.906 50.000 0.00 0.00 0.00 4.79
2664 3270 2.512485 TTCTTGTGCTAAACGACCGA 57.488 45.000 0.00 0.00 0.00 4.69
2665 3271 2.512485 TCTTGTGCTAAACGACCGAA 57.488 45.000 0.00 0.00 0.00 4.30
2666 3272 2.129607 TCTTGTGCTAAACGACCGAAC 58.870 47.619 0.00 0.00 0.00 3.95
2667 3273 1.862201 CTTGTGCTAAACGACCGAACA 59.138 47.619 0.00 0.00 0.00 3.18
2668 3274 1.493772 TGTGCTAAACGACCGAACAG 58.506 50.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.687941 AGAAGAAAGAGACACAAAGTTTTGA 57.312 32.000 11.29 0.00 40.55 2.69
54 55 9.716531 TTTATTCAAACCATTGCATGTCAATAA 57.283 25.926 12.87 5.84 43.21 1.40
59 60 8.931385 ATAGTTTATTCAAACCATTGCATGTC 57.069 30.769 0.00 0.00 44.32 3.06
103 115 6.959671 TTTGCTTTAAGGAAACACAAGTTG 57.040 33.333 7.54 0.00 38.17 3.16
119 131 8.696410 TCGAAGTAAAAGTGAAAATTTGCTTT 57.304 26.923 0.00 4.17 40.15 3.51
121 133 8.696410 TTTCGAAGTAAAAGTGAAAATTTGCT 57.304 26.923 0.00 0.00 32.69 3.91
122 134 9.408731 CTTTTCGAAGTAAAAGTGAAAATTTGC 57.591 29.630 0.00 0.00 40.18 3.68
133 145 4.287720 GCCCACACTTTTCGAAGTAAAAG 58.712 43.478 0.00 1.67 46.98 2.27
136 148 2.223745 GGCCCACACTTTTCGAAGTAA 58.776 47.619 0.00 0.00 0.00 2.24
142 154 1.234615 ACATCGGCCCACACTTTTCG 61.235 55.000 0.00 0.00 0.00 3.46
150 162 1.819632 GACCATGACATCGGCCCAC 60.820 63.158 0.00 0.00 0.00 4.61
154 166 2.254546 TAATGGACCATGACATCGGC 57.745 50.000 8.02 0.00 0.00 5.54
157 169 5.296780 ACAAACGATAATGGACCATGACATC 59.703 40.000 8.02 10.26 0.00 3.06
168 181 2.878406 CCTAGGGCACAAACGATAATGG 59.122 50.000 0.00 0.00 0.00 3.16
173 186 1.679032 GCTTCCTAGGGCACAAACGAT 60.679 52.381 9.46 0.00 0.00 3.73
175 188 0.321653 AGCTTCCTAGGGCACAAACG 60.322 55.000 9.46 0.00 0.00 3.60
185 198 6.349777 CGATCCTTGTAATCCTAGCTTCCTAG 60.350 46.154 0.00 0.00 40.64 3.02
189 202 5.455056 TCGATCCTTGTAATCCTAGCTTC 57.545 43.478 0.00 0.00 0.00 3.86
209 223 7.491372 TGTCCTCTTTACAAAATATACAGCTCG 59.509 37.037 0.00 0.00 0.00 5.03
222 236 7.754851 GAGGGTTATTTTGTCCTCTTTACAA 57.245 36.000 0.00 0.00 41.76 2.41
233 247 9.760077 CGACAATATACTAGAGGGTTATTTTGT 57.240 33.333 0.00 1.64 0.00 2.83
234 248 9.760077 ACGACAATATACTAGAGGGTTATTTTG 57.240 33.333 0.00 0.00 0.00 2.44
272 288 8.561212 GGCAAATTACCCGTAAAAAGAAAATTT 58.439 29.630 0.00 0.00 0.00 1.82
273 289 7.173562 GGGCAAATTACCCGTAAAAAGAAAATT 59.826 33.333 0.85 0.00 37.67 1.82
274 290 6.651643 GGGCAAATTACCCGTAAAAAGAAAAT 59.348 34.615 0.85 0.00 37.67 1.82
275 291 5.990386 GGGCAAATTACCCGTAAAAAGAAAA 59.010 36.000 0.85 0.00 37.67 2.29
276 292 5.539979 GGGCAAATTACCCGTAAAAAGAAA 58.460 37.500 0.85 0.00 37.67 2.52
277 293 5.136816 GGGCAAATTACCCGTAAAAAGAA 57.863 39.130 0.85 0.00 37.67 2.52
278 294 4.787260 GGGCAAATTACCCGTAAAAAGA 57.213 40.909 0.85 0.00 37.67 2.52
288 304 4.514781 AAGACGAAAAGGGCAAATTACC 57.485 40.909 0.00 0.00 0.00 2.85
289 305 6.004408 TGTAAGACGAAAAGGGCAAATTAC 57.996 37.500 0.00 0.00 0.00 1.89
290 306 6.636562 TTGTAAGACGAAAAGGGCAAATTA 57.363 33.333 0.00 0.00 0.00 1.40
291 307 5.523438 TTGTAAGACGAAAAGGGCAAATT 57.477 34.783 0.00 0.00 0.00 1.82
292 308 5.523438 TTTGTAAGACGAAAAGGGCAAAT 57.477 34.783 0.00 0.00 0.00 2.32
293 309 4.985538 TTTGTAAGACGAAAAGGGCAAA 57.014 36.364 0.00 0.00 0.00 3.68
294 310 5.523438 AATTTGTAAGACGAAAAGGGCAA 57.477 34.783 0.00 0.00 0.00 4.52
295 311 5.067936 TCAAATTTGTAAGACGAAAAGGGCA 59.932 36.000 17.47 0.00 0.00 5.36
296 312 5.525199 TCAAATTTGTAAGACGAAAAGGGC 58.475 37.500 17.47 0.00 0.00 5.19
297 313 7.484959 GCTATCAAATTTGTAAGACGAAAAGGG 59.515 37.037 17.47 0.00 0.00 3.95
298 314 7.216317 CGCTATCAAATTTGTAAGACGAAAAGG 59.784 37.037 17.47 0.00 0.00 3.11
299 315 7.216317 CCGCTATCAAATTTGTAAGACGAAAAG 59.784 37.037 17.47 7.85 0.00 2.27
300 316 7.018826 CCGCTATCAAATTTGTAAGACGAAAA 58.981 34.615 17.47 0.00 0.00 2.29
305 321 4.033587 TCGCCGCTATCAAATTTGTAAGAC 59.966 41.667 17.47 10.73 0.00 3.01
307 323 4.201773 TGTCGCCGCTATCAAATTTGTAAG 60.202 41.667 17.47 15.65 0.00 2.34
319 335 1.227263 GTGTGGATGTCGCCGCTAT 60.227 57.895 0.00 0.00 39.20 2.97
333 349 4.974275 CCGTTAGTTGGATATAGACGTGTG 59.026 45.833 0.00 0.00 0.00 3.82
339 355 5.698104 TGGTCTCCGTTAGTTGGATATAGA 58.302 41.667 0.00 0.00 34.32 1.98
341 357 4.831155 CCTGGTCTCCGTTAGTTGGATATA 59.169 45.833 0.00 0.00 34.32 0.86
344 360 1.831736 CCTGGTCTCCGTTAGTTGGAT 59.168 52.381 0.00 0.00 34.32 3.41
345 361 1.263356 CCTGGTCTCCGTTAGTTGGA 58.737 55.000 0.00 0.00 0.00 3.53
346 362 0.974383 ACCTGGTCTCCGTTAGTTGG 59.026 55.000 0.00 0.00 0.00 3.77
347 363 4.081862 TCAATACCTGGTCTCCGTTAGTTG 60.082 45.833 0.63 0.00 0.00 3.16
348 364 4.091549 TCAATACCTGGTCTCCGTTAGTT 58.908 43.478 0.63 0.00 0.00 2.24
350 366 4.341235 TGATCAATACCTGGTCTCCGTTAG 59.659 45.833 0.63 0.00 36.01 2.34
351 367 4.098960 GTGATCAATACCTGGTCTCCGTTA 59.901 45.833 0.63 0.00 36.01 3.18
352 368 3.104512 TGATCAATACCTGGTCTCCGTT 58.895 45.455 0.63 0.00 36.01 4.44
353 369 2.431057 GTGATCAATACCTGGTCTCCGT 59.569 50.000 0.63 0.00 36.01 4.69
354 370 2.430694 TGTGATCAATACCTGGTCTCCG 59.569 50.000 0.63 0.00 36.01 4.63
356 372 4.471904 TGTGTGATCAATACCTGGTCTC 57.528 45.455 0.63 0.00 36.01 3.36
358 374 5.415701 ACATTTGTGTGATCAATACCTGGTC 59.584 40.000 0.63 0.00 35.51 4.02
359 375 5.183713 CACATTTGTGTGATCAATACCTGGT 59.816 40.000 4.05 4.05 42.02 4.00
360 376 5.415389 TCACATTTGTGTGATCAATACCTGG 59.585 40.000 10.30 0.00 45.76 4.45
361 377 6.499234 TCACATTTGTGTGATCAATACCTG 57.501 37.500 10.30 1.35 45.76 4.00
364 380 7.075121 TCGTTTCACATTTGTGTGATCAATAC 58.925 34.615 11.56 0.17 46.61 1.89
369 385 6.991485 AATTCGTTTCACATTTGTGTGATC 57.009 33.333 11.56 7.76 46.61 2.92
378 394 4.201970 ACGTGTCCAAATTCGTTTCACATT 60.202 37.500 0.00 0.00 32.62 2.71
382 398 2.937149 TGACGTGTCCAAATTCGTTTCA 59.063 40.909 0.00 0.00 36.67 2.69
387 403 4.151689 ACTTGTATGACGTGTCCAAATTCG 59.848 41.667 0.00 0.00 0.00 3.34
388 404 5.607119 ACTTGTATGACGTGTCCAAATTC 57.393 39.130 0.00 0.00 0.00 2.17
389 405 4.151689 CGACTTGTATGACGTGTCCAAATT 59.848 41.667 0.00 0.00 0.00 1.82
390 406 3.678072 CGACTTGTATGACGTGTCCAAAT 59.322 43.478 0.00 0.00 0.00 2.32
391 407 3.054166 CGACTTGTATGACGTGTCCAAA 58.946 45.455 0.00 0.00 0.00 3.28
392 408 2.034939 ACGACTTGTATGACGTGTCCAA 59.965 45.455 0.00 0.00 37.02 3.53
393 409 1.610038 ACGACTTGTATGACGTGTCCA 59.390 47.619 0.00 0.00 37.02 4.02
394 410 2.342910 ACGACTTGTATGACGTGTCC 57.657 50.000 0.00 0.00 37.02 4.02
423 439 1.070105 CGGGTCAACAAGAACGGGA 59.930 57.895 0.00 0.00 33.56 5.14
448 622 4.578898 TGCAACGACGAGCACGGT 62.579 61.111 13.93 0.00 44.46 4.83
449 623 3.767230 CTGCAACGACGAGCACGG 61.767 66.667 13.93 4.38 44.46 4.94
451 625 4.415501 CGCTGCAACGACGAGCAC 62.416 66.667 2.68 10.70 36.62 4.40
458 632 4.742201 GAGGAGGCGCTGCAACGA 62.742 66.667 14.76 0.00 34.06 3.85
460 634 3.426568 GTGAGGAGGCGCTGCAAC 61.427 66.667 7.64 0.00 0.00 4.17
461 635 4.704833 GGTGAGGAGGCGCTGCAA 62.705 66.667 7.64 0.00 0.00 4.08
464 638 4.463879 CAGGGTGAGGAGGCGCTG 62.464 72.222 7.64 0.00 38.85 5.18
466 640 4.459089 GACAGGGTGAGGAGGCGC 62.459 72.222 0.00 0.00 0.00 6.53
467 641 2.583441 TTGACAGGGTGAGGAGGCG 61.583 63.158 0.00 0.00 0.00 5.52
468 642 1.003233 GTTGACAGGGTGAGGAGGC 60.003 63.158 0.00 0.00 0.00 4.70
469 643 0.035458 GTGTTGACAGGGTGAGGAGG 59.965 60.000 0.00 0.00 0.00 4.30
470 644 0.035458 GGTGTTGACAGGGTGAGGAG 59.965 60.000 0.00 0.00 0.00 3.69
471 645 1.754380 CGGTGTTGACAGGGTGAGGA 61.754 60.000 0.00 0.00 0.00 3.71
472 646 1.301716 CGGTGTTGACAGGGTGAGG 60.302 63.158 0.00 0.00 0.00 3.86
473 647 1.961277 GCGGTGTTGACAGGGTGAG 60.961 63.158 0.00 0.00 0.00 3.51
474 648 2.110213 GCGGTGTTGACAGGGTGA 59.890 61.111 0.00 0.00 0.00 4.02
475 649 2.978010 GGCGGTGTTGACAGGGTG 60.978 66.667 0.00 0.00 0.00 4.61
476 650 3.484806 TGGCGGTGTTGACAGGGT 61.485 61.111 0.00 0.00 0.00 4.34
477 651 2.978010 GTGGCGGTGTTGACAGGG 60.978 66.667 0.00 0.00 0.00 4.45
478 652 2.978010 GGTGGCGGTGTTGACAGG 60.978 66.667 0.00 0.00 0.00 4.00
479 653 1.961277 GAGGTGGCGGTGTTGACAG 60.961 63.158 0.00 0.00 0.00 3.51
480 654 2.110213 GAGGTGGCGGTGTTGACA 59.890 61.111 0.00 0.00 0.00 3.58
500 674 1.616374 GATAGAGGGAAGGCCGAGAAG 59.384 57.143 0.00 0.00 33.83 2.85
504 678 1.152312 GGGATAGAGGGAAGGCCGA 60.152 63.158 0.00 0.00 33.83 5.54
581 756 4.814294 CTGTGGCGTCGCTACCCC 62.814 72.222 27.81 6.98 39.28 4.95
604 779 3.518998 AGAGATGGGGACGACGCG 61.519 66.667 3.53 3.53 34.15 6.01
605 780 2.105128 CAGAGATGGGGACGACGC 59.895 66.667 0.00 0.00 0.00 5.19
607 782 1.134965 CAAGTCAGAGATGGGGACGAC 60.135 57.143 0.00 0.00 36.68 4.34
608 783 1.186200 CAAGTCAGAGATGGGGACGA 58.814 55.000 0.00 0.00 36.68 4.20
609 784 0.898320 ACAAGTCAGAGATGGGGACG 59.102 55.000 0.00 0.00 36.68 4.79
610 785 2.355209 GGAACAAGTCAGAGATGGGGAC 60.355 54.545 0.00 0.00 0.00 4.46
611 786 1.909302 GGAACAAGTCAGAGATGGGGA 59.091 52.381 0.00 0.00 0.00 4.81
612 787 1.912043 AGGAACAAGTCAGAGATGGGG 59.088 52.381 0.00 0.00 0.00 4.96
613 788 2.417924 CGAGGAACAAGTCAGAGATGGG 60.418 54.545 0.00 0.00 0.00 4.00
615 790 2.094286 AGCGAGGAACAAGTCAGAGATG 60.094 50.000 0.00 0.00 0.00 2.90
616 791 2.165437 GAGCGAGGAACAAGTCAGAGAT 59.835 50.000 0.00 0.00 0.00 2.75
690 865 2.110213 GTCGGTTGGTCAGCCACA 59.890 61.111 4.80 0.00 46.01 4.17
699 874 2.741116 ATTTTTGGCGCGTCGGTTGG 62.741 55.000 6.09 0.00 0.00 3.77
737 912 1.883021 GAATGGGACCGGTTTGCTG 59.117 57.895 9.42 0.00 0.00 4.41
738 913 1.674322 CGAATGGGACCGGTTTGCT 60.674 57.895 9.42 0.00 0.00 3.91
748 923 1.204467 GAATTTTGCTGGCGAATGGGA 59.796 47.619 0.00 0.00 0.00 4.37
762 937 0.958822 GCAGACGGGGTGTGAATTTT 59.041 50.000 0.00 0.00 0.00 1.82
767 942 4.954118 AGGGCAGACGGGGTGTGA 62.954 66.667 0.00 0.00 0.00 3.58
803 978 3.739613 ATCCGGGAAAGGTGGCCC 61.740 66.667 0.00 0.00 41.11 5.80
804 979 2.440247 CATCCGGGAAAGGTGGCC 60.440 66.667 0.00 0.00 0.00 5.36
805 980 3.140814 GCATCCGGGAAAGGTGGC 61.141 66.667 0.00 0.00 0.00 5.01
806 981 2.824041 CGCATCCGGGAAAGGTGG 60.824 66.667 0.00 0.00 0.00 4.61
820 1034 4.713735 TGAAATGCCGGAGCCGCA 62.714 61.111 5.05 5.98 38.69 5.69
821 1035 3.439540 TTGAAATGCCGGAGCCGC 61.440 61.111 5.05 0.00 38.69 6.53
829 1043 3.603158 ATTTAACGGGGTTGAAATGCC 57.397 42.857 0.00 0.00 0.00 4.40
921 1135 1.452833 GCAGGCTGGAATGGAGGTC 60.453 63.158 17.64 0.00 0.00 3.85
958 1172 1.152030 AGAGGTGTGAAGGCTGGGA 60.152 57.895 0.00 0.00 0.00 4.37
959 1173 1.298014 GAGAGGTGTGAAGGCTGGG 59.702 63.158 0.00 0.00 0.00 4.45
960 1174 1.298014 GGAGAGGTGTGAAGGCTGG 59.702 63.158 0.00 0.00 0.00 4.85
961 1175 1.298014 GGGAGAGGTGTGAAGGCTG 59.702 63.158 0.00 0.00 0.00 4.85
962 1176 1.920835 GGGGAGAGGTGTGAAGGCT 60.921 63.158 0.00 0.00 0.00 4.58
963 1177 2.671682 GGGGAGAGGTGTGAAGGC 59.328 66.667 0.00 0.00 0.00 4.35
964 1178 1.229658 AGGGGGAGAGGTGTGAAGG 60.230 63.158 0.00 0.00 0.00 3.46
965 1179 1.608717 CGAGGGGGAGAGGTGTGAAG 61.609 65.000 0.00 0.00 0.00 3.02
966 1180 1.609501 CGAGGGGGAGAGGTGTGAA 60.610 63.158 0.00 0.00 0.00 3.18
967 1181 2.037367 CGAGGGGGAGAGGTGTGA 59.963 66.667 0.00 0.00 0.00 3.58
968 1182 3.775654 GCGAGGGGGAGAGGTGTG 61.776 72.222 0.00 0.00 0.00 3.82
969 1183 3.966930 GAGCGAGGGGGAGAGGTGT 62.967 68.421 0.00 0.00 0.00 4.16
970 1184 3.151022 GAGCGAGGGGGAGAGGTG 61.151 72.222 0.00 0.00 0.00 4.00
971 1185 4.467107 GGAGCGAGGGGGAGAGGT 62.467 72.222 0.00 0.00 0.00 3.85
973 1187 4.824515 ACGGAGCGAGGGGGAGAG 62.825 72.222 0.00 0.00 0.00 3.20
974 1188 4.816984 GACGGAGCGAGGGGGAGA 62.817 72.222 0.00 0.00 0.00 3.71
985 1199 2.363795 TGGCTGGTAGGGACGGAG 60.364 66.667 0.00 0.00 0.00 4.63
986 1200 2.363795 CTGGCTGGTAGGGACGGA 60.364 66.667 0.00 0.00 0.00 4.69
1004 1218 0.252927 CACTTTCCCCTCCTCCTCCT 60.253 60.000 0.00 0.00 0.00 3.69
1005 1219 1.275421 CCACTTTCCCCTCCTCCTCC 61.275 65.000 0.00 0.00 0.00 4.30
1007 1221 1.925972 GCCACTTTCCCCTCCTCCT 60.926 63.158 0.00 0.00 0.00 3.69
1008 1222 1.925972 AGCCACTTTCCCCTCCTCC 60.926 63.158 0.00 0.00 0.00 4.30
1022 1236 2.426406 ATCGTCGATCCAGCAGCCA 61.426 57.895 0.75 0.00 0.00 4.75
1153 1373 2.026734 CTCGTCGCATCTGCCGAT 59.973 61.111 4.43 0.00 35.04 4.18
1206 1427 2.674220 GGAGAAGGCAGGTGAGGGG 61.674 68.421 0.00 0.00 0.00 4.79
1215 1436 2.127708 GGAGGAATTAGGGAGAAGGCA 58.872 52.381 0.00 0.00 0.00 4.75
1229 1450 2.543637 AGGGAGGGAGGGGAGGAA 60.544 66.667 0.00 0.00 0.00 3.36
1249 1470 4.946478 ATCGTAGGAGGAGATTCTTTGG 57.054 45.455 0.00 0.00 0.00 3.28
1383 1613 3.000080 GAACTTGTCGTCGCCGCTG 62.000 63.158 0.00 0.00 0.00 5.18
1476 1726 3.238441 CGAAGAAGACGACTGGAAAGAG 58.762 50.000 0.00 0.00 0.00 2.85
1575 1825 6.940867 GGAAAACCTCAATTTGTCCTAGTAGT 59.059 38.462 0.00 0.00 0.00 2.73
1576 1826 6.092259 CGGAAAACCTCAATTTGTCCTAGTAG 59.908 42.308 0.00 0.00 0.00 2.57
1577 1827 5.935789 CGGAAAACCTCAATTTGTCCTAGTA 59.064 40.000 0.00 0.00 0.00 1.82
1599 1849 5.006153 ACAAAAGGGAGAAAAAGAAACGG 57.994 39.130 0.00 0.00 0.00 4.44
1610 1860 4.339247 CAGCAAAGAGAAACAAAAGGGAGA 59.661 41.667 0.00 0.00 0.00 3.71
1611 1861 4.339247 TCAGCAAAGAGAAACAAAAGGGAG 59.661 41.667 0.00 0.00 0.00 4.30
1612 1862 4.277476 TCAGCAAAGAGAAACAAAAGGGA 58.723 39.130 0.00 0.00 0.00 4.20
1618 1868 4.126437 TCGTCATCAGCAAAGAGAAACAA 58.874 39.130 0.00 0.00 0.00 2.83
1619 1869 3.727726 TCGTCATCAGCAAAGAGAAACA 58.272 40.909 0.00 0.00 0.00 2.83
1620 1870 4.935885 ATCGTCATCAGCAAAGAGAAAC 57.064 40.909 0.00 0.00 0.00 2.78
1659 1910 3.186909 TCCAGTTCAATCGCATAACTCG 58.813 45.455 0.00 0.00 31.21 4.18
1664 1915 4.940654 TGAATGTTCCAGTTCAATCGCATA 59.059 37.500 0.00 0.00 31.85 3.14
1676 1927 1.619654 TGCCCACTTGAATGTTCCAG 58.380 50.000 0.00 0.00 0.00 3.86
1683 1934 2.494471 CACATCACATGCCCACTTGAAT 59.506 45.455 0.00 0.00 0.00 2.57
1734 1987 3.808174 GCATAACAGATCGGGTAAGGAAC 59.192 47.826 0.00 0.00 0.00 3.62
1791 2044 3.572584 GCAAGTTTGGAGCTGAAATCAG 58.427 45.455 6.05 6.05 46.40 2.90
1875 2137 1.412343 GTGCAGCAAAGAGGGGAAAAA 59.588 47.619 0.00 0.00 0.00 1.94
1922 2184 0.682209 AAGCCATGGACAGGATGCAC 60.682 55.000 18.40 0.00 42.53 4.57
2081 2355 2.036346 AGCCAAATCTGCAAGGAAACAC 59.964 45.455 0.00 0.00 0.00 3.32
2106 2380 5.669477 ACAGGTGAAGATGAGCTAGAAATC 58.331 41.667 0.00 0.00 0.00 2.17
2112 2386 4.245660 CGAAAACAGGTGAAGATGAGCTA 58.754 43.478 0.00 0.00 0.00 3.32
2123 2397 6.055231 TGTGATAGAAAACGAAAACAGGTG 57.945 37.500 0.00 0.00 0.00 4.00
2126 2400 8.761497 TCTACTTGTGATAGAAAACGAAAACAG 58.239 33.333 0.00 0.00 0.00 3.16
2142 2421 4.796830 GCGATACACGAATTCTACTTGTGA 59.203 41.667 14.80 2.73 45.77 3.58
2164 2443 1.453524 CGAGTGCACGCTATAAGATGC 59.546 52.381 18.64 0.00 38.59 3.91
2165 2444 2.732366 ACGAGTGCACGCTATAAGATG 58.268 47.619 18.64 2.83 36.70 2.90
2166 2445 3.813724 TCTACGAGTGCACGCTATAAGAT 59.186 43.478 18.64 0.00 36.70 2.40
2171 2450 3.116300 CAAATCTACGAGTGCACGCTAT 58.884 45.455 18.64 9.03 36.70 2.97
2183 2462 6.250819 CAAAGCTTGGTCATACAAATCTACG 58.749 40.000 0.00 0.00 0.00 3.51
2203 2485 6.567050 CATATTGTCCTTCATCCAACCAAAG 58.433 40.000 0.00 0.00 0.00 2.77
2209 2491 6.252599 ACTAGCATATTGTCCTTCATCCAA 57.747 37.500 0.00 0.00 0.00 3.53
2211 2493 9.944376 TTTATACTAGCATATTGTCCTTCATCC 57.056 33.333 0.00 0.00 0.00 3.51
2243 2649 9.944376 AGCGTCAATTAATATGGATTGTACTAT 57.056 29.630 9.76 0.00 35.35 2.12
2245 2651 7.307989 GCAGCGTCAATTAATATGGATTGTACT 60.308 37.037 9.76 5.25 35.35 2.73
2247 2653 6.710295 AGCAGCGTCAATTAATATGGATTGTA 59.290 34.615 9.76 0.00 35.35 2.41
2250 2656 6.262944 TGAAGCAGCGTCAATTAATATGGATT 59.737 34.615 8.76 0.00 0.00 3.01
2251 2657 5.764686 TGAAGCAGCGTCAATTAATATGGAT 59.235 36.000 8.76 0.00 0.00 3.41
2270 2676 4.461405 CTGCGATGTATGCTAATTGAAGC 58.539 43.478 0.00 0.00 43.08 3.86
2271 2677 4.461405 GCTGCGATGTATGCTAATTGAAG 58.539 43.478 0.00 0.00 0.00 3.02
2272 2678 3.059665 CGCTGCGATGTATGCTAATTGAA 60.060 43.478 18.66 0.00 0.00 2.69
2274 2680 2.476241 TCGCTGCGATGTATGCTAATTG 59.524 45.455 22.24 0.00 0.00 2.32
2275 2681 2.733552 CTCGCTGCGATGTATGCTAATT 59.266 45.455 26.15 0.00 34.61 1.40
2276 2682 2.288457 ACTCGCTGCGATGTATGCTAAT 60.288 45.455 26.15 0.00 34.61 1.73
2277 2683 1.067060 ACTCGCTGCGATGTATGCTAA 59.933 47.619 26.15 0.00 34.61 3.09
2278 2684 0.668535 ACTCGCTGCGATGTATGCTA 59.331 50.000 26.15 0.00 34.61 3.49
2280 2686 0.230769 GAACTCGCTGCGATGTATGC 59.769 55.000 26.15 13.48 34.61 3.14
2281 2687 1.559831 TGAACTCGCTGCGATGTATG 58.440 50.000 26.15 15.54 34.61 2.39
2282 2688 2.223805 TGATGAACTCGCTGCGATGTAT 60.224 45.455 26.15 16.47 34.61 2.29
2283 2689 1.134175 TGATGAACTCGCTGCGATGTA 59.866 47.619 26.15 12.47 34.61 2.29
2284 2690 0.108662 TGATGAACTCGCTGCGATGT 60.109 50.000 26.15 20.86 34.61 3.06
2287 2693 0.319469 TTGTGATGAACTCGCTGCGA 60.319 50.000 24.43 24.43 35.31 5.10
2288 2694 0.094216 CTTGTGATGAACTCGCTGCG 59.906 55.000 17.25 17.25 35.31 5.18
2289 2695 0.445436 CCTTGTGATGAACTCGCTGC 59.555 55.000 0.00 0.00 35.31 5.25
2290 2696 1.998315 CTCCTTGTGATGAACTCGCTG 59.002 52.381 0.00 0.00 35.31 5.18
2293 2699 3.303881 TGACTCCTTGTGATGAACTCG 57.696 47.619 0.00 0.00 0.00 4.18
2294 2700 3.999663 CCTTGACTCCTTGTGATGAACTC 59.000 47.826 0.00 0.00 0.00 3.01
2295 2701 3.648067 TCCTTGACTCCTTGTGATGAACT 59.352 43.478 0.00 0.00 0.00 3.01
2296 2702 3.999663 CTCCTTGACTCCTTGTGATGAAC 59.000 47.826 0.00 0.00 0.00 3.18
2297 2703 3.903714 TCTCCTTGACTCCTTGTGATGAA 59.096 43.478 0.00 0.00 0.00 2.57
2298 2704 3.510459 TCTCCTTGACTCCTTGTGATGA 58.490 45.455 0.00 0.00 0.00 2.92
2300 2706 3.784178 TCTCTCCTTGACTCCTTGTGAT 58.216 45.455 0.00 0.00 0.00 3.06
2301 2707 3.244887 TCTCTCCTTGACTCCTTGTGA 57.755 47.619 0.00 0.00 0.00 3.58
2302 2708 3.070159 TGTTCTCTCCTTGACTCCTTGTG 59.930 47.826 0.00 0.00 0.00 3.33
2303 2709 3.309296 TGTTCTCTCCTTGACTCCTTGT 58.691 45.455 0.00 0.00 0.00 3.16
2304 2710 4.342862 TTGTTCTCTCCTTGACTCCTTG 57.657 45.455 0.00 0.00 0.00 3.61
2305 2711 4.843516 AGATTGTTCTCTCCTTGACTCCTT 59.156 41.667 0.00 0.00 0.00 3.36
2307 2713 4.502962 CAGATTGTTCTCTCCTTGACTCC 58.497 47.826 0.00 0.00 0.00 3.85
2308 2714 3.932089 GCAGATTGTTCTCTCCTTGACTC 59.068 47.826 0.00 0.00 0.00 3.36
2309 2715 3.582208 AGCAGATTGTTCTCTCCTTGACT 59.418 43.478 0.00 0.00 0.00 3.41
2310 2716 3.936564 AGCAGATTGTTCTCTCCTTGAC 58.063 45.455 0.00 0.00 0.00 3.18
2311 2717 5.423290 TGATAGCAGATTGTTCTCTCCTTGA 59.577 40.000 0.00 0.00 0.00 3.02
2313 2719 5.946942 TGATAGCAGATTGTTCTCTCCTT 57.053 39.130 0.00 0.00 0.00 3.36
2315 2721 5.669477 ACTTGATAGCAGATTGTTCTCTCC 58.331 41.667 0.00 0.00 0.00 3.71
2316 2722 6.815641 TGAACTTGATAGCAGATTGTTCTCTC 59.184 38.462 14.43 0.00 35.00 3.20
2317 2723 6.705302 TGAACTTGATAGCAGATTGTTCTCT 58.295 36.000 14.43 0.00 35.00 3.10
2340 2918 7.012327 CACCCCGCCAATATCTATTGTATTATG 59.988 40.741 8.66 0.00 41.04 1.90
2351 2930 1.802553 ACTACACCCCGCCAATATCT 58.197 50.000 0.00 0.00 0.00 1.98
2352 2931 3.259876 TCATACTACACCCCGCCAATATC 59.740 47.826 0.00 0.00 0.00 1.63
2353 2932 3.244582 TCATACTACACCCCGCCAATAT 58.755 45.455 0.00 0.00 0.00 1.28
2354 2933 2.680251 TCATACTACACCCCGCCAATA 58.320 47.619 0.00 0.00 0.00 1.90
2356 2935 1.277579 TTCATACTACACCCCGCCAA 58.722 50.000 0.00 0.00 0.00 4.52
2357 2936 1.277579 TTTCATACTACACCCCGCCA 58.722 50.000 0.00 0.00 0.00 5.69
2360 2939 4.119862 CTCACATTTCATACTACACCCCG 58.880 47.826 0.00 0.00 0.00 5.73
2361 2940 5.099042 ACTCACATTTCATACTACACCCC 57.901 43.478 0.00 0.00 0.00 4.95
2362 2941 6.128007 CCAAACTCACATTTCATACTACACCC 60.128 42.308 0.00 0.00 0.00 4.61
2364 2943 6.430000 ACCCAAACTCACATTTCATACTACAC 59.570 38.462 0.00 0.00 0.00 2.90
2366 2945 7.305474 CAACCCAAACTCACATTTCATACTAC 58.695 38.462 0.00 0.00 0.00 2.73
2367 2946 6.432783 CCAACCCAAACTCACATTTCATACTA 59.567 38.462 0.00 0.00 0.00 1.82
2369 2948 5.010617 ACCAACCCAAACTCACATTTCATAC 59.989 40.000 0.00 0.00 0.00 2.39
2370 2949 5.144100 ACCAACCCAAACTCACATTTCATA 58.856 37.500 0.00 0.00 0.00 2.15
2371 2950 3.966665 ACCAACCCAAACTCACATTTCAT 59.033 39.130 0.00 0.00 0.00 2.57
2372 2951 3.370104 ACCAACCCAAACTCACATTTCA 58.630 40.909 0.00 0.00 0.00 2.69
2373 2952 4.339814 TGTACCAACCCAAACTCACATTTC 59.660 41.667 0.00 0.00 0.00 2.17
2377 2956 3.367646 TTGTACCAACCCAAACTCACA 57.632 42.857 0.00 0.00 0.00 3.58
2382 2961 3.385111 TGTGGAATTGTACCAACCCAAAC 59.615 43.478 0.00 0.00 39.22 2.93
2384 2963 3.314307 TGTGGAATTGTACCAACCCAA 57.686 42.857 0.00 0.00 39.22 4.12
2386 2965 3.426615 TGATGTGGAATTGTACCAACCC 58.573 45.455 0.00 0.00 39.22 4.11
2391 2970 6.266168 TGAAACATGATGTGGAATTGTACC 57.734 37.500 0.00 0.00 0.00 3.34
2393 2972 7.754475 CGAAATGAAACATGATGTGGAATTGTA 59.246 33.333 0.00 0.00 0.00 2.41
2395 2974 6.807720 TCGAAATGAAACATGATGTGGAATTG 59.192 34.615 0.00 0.00 0.00 2.32
2398 2977 5.106197 CCTCGAAATGAAACATGATGTGGAA 60.106 40.000 0.00 0.00 0.00 3.53
2408 3013 6.554419 CATTTGATAGCCTCGAAATGAAACA 58.446 36.000 0.00 0.00 36.04 2.83
2409 3014 5.456822 GCATTTGATAGCCTCGAAATGAAAC 59.543 40.000 16.77 0.00 36.04 2.78
2410 3015 5.125257 TGCATTTGATAGCCTCGAAATGAAA 59.875 36.000 16.77 0.00 36.04 2.69
2419 3024 3.470709 TGCTACTGCATTTGATAGCCTC 58.529 45.455 9.97 0.00 45.31 4.70
2420 3025 3.565764 TGCTACTGCATTTGATAGCCT 57.434 42.857 9.97 0.00 45.31 4.58
2432 3037 2.854777 CGTGAACTAGACATGCTACTGC 59.145 50.000 0.00 0.00 40.20 4.40
2433 3038 3.128764 TCCGTGAACTAGACATGCTACTG 59.871 47.826 0.00 0.00 0.00 2.74
2434 3039 3.128938 GTCCGTGAACTAGACATGCTACT 59.871 47.826 0.00 0.00 0.00 2.57
2435 3040 3.436496 GTCCGTGAACTAGACATGCTAC 58.564 50.000 0.00 0.47 0.00 3.58
2437 3042 1.204941 GGTCCGTGAACTAGACATGCT 59.795 52.381 0.00 0.00 31.99 3.79
2438 3043 1.641577 GGTCCGTGAACTAGACATGC 58.358 55.000 0.00 0.00 31.99 4.06
2439 3044 1.909376 CGGTCCGTGAACTAGACATG 58.091 55.000 2.08 1.95 31.99 3.21
2440 3045 0.172803 GCGGTCCGTGAACTAGACAT 59.827 55.000 13.94 0.00 31.99 3.06
2441 3046 1.174078 TGCGGTCCGTGAACTAGACA 61.174 55.000 13.94 0.00 31.99 3.41
2442 3047 0.456312 CTGCGGTCCGTGAACTAGAC 60.456 60.000 13.94 0.00 0.00 2.59
2443 3048 0.607217 TCTGCGGTCCGTGAACTAGA 60.607 55.000 13.94 4.99 0.00 2.43
2444 3049 0.456221 ATCTGCGGTCCGTGAACTAG 59.544 55.000 13.94 2.74 0.00 2.57
2453 3058 0.590195 GATGCATTCATCTGCGGTCC 59.410 55.000 0.00 0.00 45.30 4.46
2457 3062 0.591659 CTGGGATGCATTCATCTGCG 59.408 55.000 7.43 0.00 46.41 5.18
2458 3063 1.977056 TCTGGGATGCATTCATCTGC 58.023 50.000 7.43 0.00 46.41 4.26
2483 3088 6.068010 AGAATGAAGAGATACGAGGATGACT 58.932 40.000 0.00 0.00 0.00 3.41
2485 3090 8.353684 GTTTAGAATGAAGAGATACGAGGATGA 58.646 37.037 0.00 0.00 0.00 2.92
2486 3091 8.356657 AGTTTAGAATGAAGAGATACGAGGATG 58.643 37.037 0.00 0.00 0.00 3.51
2487 3092 8.356657 CAGTTTAGAATGAAGAGATACGAGGAT 58.643 37.037 0.00 0.00 0.00 3.24
2488 3093 7.556635 TCAGTTTAGAATGAAGAGATACGAGGA 59.443 37.037 0.00 0.00 0.00 3.71
2489 3094 7.708051 TCAGTTTAGAATGAAGAGATACGAGG 58.292 38.462 0.00 0.00 0.00 4.63
2490 3095 7.378461 GCTCAGTTTAGAATGAAGAGATACGAG 59.622 40.741 0.00 0.00 0.00 4.18
2491 3096 7.148069 TGCTCAGTTTAGAATGAAGAGATACGA 60.148 37.037 0.00 0.00 0.00 3.43
2492 3097 6.975197 TGCTCAGTTTAGAATGAAGAGATACG 59.025 38.462 0.00 0.00 0.00 3.06
2493 3098 8.885494 ATGCTCAGTTTAGAATGAAGAGATAC 57.115 34.615 0.00 0.00 0.00 2.24
2496 3101 9.322773 CATAATGCTCAGTTTAGAATGAAGAGA 57.677 33.333 0.00 0.00 0.00 3.10
2497 3102 8.557864 CCATAATGCTCAGTTTAGAATGAAGAG 58.442 37.037 0.00 0.00 0.00 2.85
2498 3103 8.267183 TCCATAATGCTCAGTTTAGAATGAAGA 58.733 33.333 0.00 0.00 0.00 2.87
2499 3104 8.442632 TCCATAATGCTCAGTTTAGAATGAAG 57.557 34.615 0.00 0.00 0.00 3.02
2500 3105 8.985315 ATCCATAATGCTCAGTTTAGAATGAA 57.015 30.769 0.00 0.00 0.00 2.57
2501 3106 8.985315 AATCCATAATGCTCAGTTTAGAATGA 57.015 30.769 0.00 0.00 0.00 2.57
2504 3109 9.120538 GGTAAATCCATAATGCTCAGTTTAGAA 57.879 33.333 0.00 0.00 35.97 2.10
2505 3110 7.719633 GGGTAAATCCATAATGCTCAGTTTAGA 59.280 37.037 0.00 0.00 38.11 2.10
2506 3111 7.721399 AGGGTAAATCCATAATGCTCAGTTTAG 59.279 37.037 0.00 0.00 38.11 1.85
2507 3112 7.582719 AGGGTAAATCCATAATGCTCAGTTTA 58.417 34.615 0.00 0.00 38.11 2.01
2508 3113 6.435164 AGGGTAAATCCATAATGCTCAGTTT 58.565 36.000 0.00 0.00 38.11 2.66
2511 3116 6.773638 AGTAGGGTAAATCCATAATGCTCAG 58.226 40.000 0.00 0.00 34.10 3.35
2519 3124 7.347222 AGTGACATGAAGTAGGGTAAATCCATA 59.653 37.037 0.00 0.00 38.11 2.74
2562 3168 9.046846 TCATTCTGTAAAGAATCCCTAGAAGAA 57.953 33.333 5.08 0.00 36.48 2.52
2563 3169 8.478877 GTCATTCTGTAAAGAATCCCTAGAAGA 58.521 37.037 5.08 0.00 36.48 2.87
2575 3181 5.412594 GCAAGACATGGTCATTCTGTAAAGA 59.587 40.000 0.00 0.00 34.60 2.52
2605 3211 4.130118 GGTACTCCAGTCCAATAATGCAG 58.870 47.826 0.00 0.00 0.00 4.41
2618 3224 5.579511 CGTTTTGTTATGTAGGGTACTCCAG 59.420 44.000 0.00 0.00 38.24 3.86
2621 3227 5.723295 TCCGTTTTGTTATGTAGGGTACTC 58.277 41.667 0.00 0.00 0.00 2.59
2624 3230 6.949715 AGAATCCGTTTTGTTATGTAGGGTA 58.050 36.000 0.00 0.00 0.00 3.69
2626 3232 6.150474 ACAAGAATCCGTTTTGTTATGTAGGG 59.850 38.462 0.00 0.00 31.38 3.53
2632 3238 5.705609 AGCACAAGAATCCGTTTTGTTAT 57.294 34.783 0.00 0.00 33.06 1.89
2633 3239 6.621316 TTAGCACAAGAATCCGTTTTGTTA 57.379 33.333 0.00 0.00 33.06 2.41
2634 3240 5.508200 TTAGCACAAGAATCCGTTTTGTT 57.492 34.783 0.00 0.00 33.06 2.83
2635 3241 5.278604 GTTTAGCACAAGAATCCGTTTTGT 58.721 37.500 0.00 0.00 35.56 2.83
2636 3242 4.378616 CGTTTAGCACAAGAATCCGTTTTG 59.621 41.667 0.00 0.00 0.00 2.44
2637 3243 4.273969 TCGTTTAGCACAAGAATCCGTTTT 59.726 37.500 0.00 0.00 0.00 2.43
2638 3244 3.810941 TCGTTTAGCACAAGAATCCGTTT 59.189 39.130 0.00 0.00 0.00 3.60
2639 3245 3.185797 GTCGTTTAGCACAAGAATCCGTT 59.814 43.478 0.00 0.00 0.00 4.44
2640 3246 2.735134 GTCGTTTAGCACAAGAATCCGT 59.265 45.455 0.00 0.00 0.00 4.69
2641 3247 2.093783 GGTCGTTTAGCACAAGAATCCG 59.906 50.000 0.00 0.00 0.00 4.18
2642 3248 2.093783 CGGTCGTTTAGCACAAGAATCC 59.906 50.000 0.00 0.00 0.00 3.01
2643 3249 2.991190 TCGGTCGTTTAGCACAAGAATC 59.009 45.455 0.00 0.00 0.00 2.52
2644 3250 3.034721 TCGGTCGTTTAGCACAAGAAT 57.965 42.857 0.00 0.00 0.00 2.40
2645 3251 2.512485 TCGGTCGTTTAGCACAAGAA 57.488 45.000 0.00 0.00 0.00 2.52
2646 3252 2.129607 GTTCGGTCGTTTAGCACAAGA 58.870 47.619 0.00 0.00 0.00 3.02
2647 3253 1.862201 TGTTCGGTCGTTTAGCACAAG 59.138 47.619 0.00 0.00 0.00 3.16
2648 3254 1.862201 CTGTTCGGTCGTTTAGCACAA 59.138 47.619 0.00 0.00 0.00 3.33
2649 3255 1.493772 CTGTTCGGTCGTTTAGCACA 58.506 50.000 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.