>input_sequence_72240
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-------------CCAGAGGAGGAGGAGGGGAAAGTGGCTGCTGGATCGACGATGATGTGGGGCGTCGCAGCCGCCGTCG
CCTCCGCGGCCGCCGTCGCCGTGGCCTCCGGCGCCGAGCTCCTCGCCTGCGACTGCGCCCCGACGGAGCCG------CCC
GCCGCCGTCGCCATCGGCAGATGCGACGAGTTCCTCCTCCGCCAGCGGGTACGGATCACGGC-TCCCCCCTCACCTGCCT
TCTCCCTAATTCCTCCCCTCCCTCCCTCCCCAAAGAATCTCCTCCTACGATAGCAATCCGCTCTCGATTTTGATTTGGGA
TCACGACGGC-ACGGACGGCTTCTTGG--------ACTGCTCTGTTCTTACATGCTCTGCTTTCCGCAGGATTCCTCGGC
GTCGAGCGGGGCCAGCGGC------------GACGACAAGTTCGCGCCGCGGTTCGACGGGCTGCGCTTCATCGAGACGC
TCGTCACGGCGCACCGCTGAAAA--------TTCCCCCCTGCGGACTCTTTCCAGTCGTCTTCTTCGTGCGATTCGCGGG
GAGAGGCTGGCTGCTACCCTATTAATTCGGCGATTGGCGGCCAACGCGCCGCCGAATTTTTGCTACTACTAGGACAAATT
GAGGTTTTCCGTTTCTTTTTCTCCCTTTTGTTTCTCTTTGCTGATGACGATTATCGTCC-TATTGTTGTCGAGTTATGC-
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>chr2B_1_TraesCS2B01G507200
TTTACTTGTTGGGTCATCGATGTTTTTCAAAACTTTGTGTCTCTTTCTTCTATATTATTGA-----------CATGCAAT
GGTTTGAATAAACTATATTAAACGAGAAAGAAGGCAACTTGTGTTTCCTTAAAGCAAATTTTCACTTTTACTTCGAAAAG
TGTGGGCCG-ATGTCATGGTCCATTATCGTTTGTGCCCTAGGAAGCTAGGATTACAAGGA-TCGAGCTGTATATTTTGTA
AAGAGGACAAAATAA--CCCTCTAGTATATTGTCGTTAAATTTGTTCAAATTTTCTTTTTACGGGTAATTTGCCCTTTTC
GTCTTACAAATTTGATAGCGGCGACATCCACACGTCTATATCCAACTAACGGAGACCAGGTATTGATCACACAAATGTGA
AACGAATTTGGACACGTCATACAAGTCGTTGCCCTCCGTCCCGTTCTTGTT-----------------------------
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-------------------------------------------------GACCCGCTCGCCACCGTGCTCGTCGTTGCAG
CGCCTCCTCACCCTGTCAACACCGCCACCTCCGCTTCTCGGCCTTCCCTCTATCCCCACCACCTCCCGGG-ACCGACGAC
CATCTCCCGCACTCGTCAACCCTCTGCCTCGCCTCGGGGTAGCGACGCCACAGCCAGCCGCGTCGTCCCCATCTCTGACT
TGTTCCTCGCTCACGCTCACGCCGACCAGCGCGTCGTCCGACTCGGTGCTGCGCGTTTGCTCAGTGTGGCTGACCAACCG
ACGCGCCAAAAATTTCCAGACACCTCGCTAACAGCAAACCGGTCCCATTCGCCAGCAAAATTCACACCCCGTCTGCCCTC
CCGCCGCCGCCCGCGTCGGGCCACCTTTCC---------------------------------------CGGATGCGGCT
CCGGCATTTCAACCCCGTTAAATTCCGCGCTCAGGTCCGGCCGCGCCTTCCTTCCTGTAGCGCCGTATAAAAAAAGCACT
ACGCGGCTAGCCGTGACCTCCATTCCAGCCTGCCCTGCCCAAGCAAAGAATTCCCAGCCTTCACACCTCTCCCCCTCGCT
CCGTCCCTACCAGCCAGAGGAGGAGGAGGGGAAAGTGGCTGCTGGATCGACGATGATGTGGGGCGTCGCAGCCGCCGTCG
CCTCCGCGGCCGCCGTCGCCGTGGCCTCCGGCGCCGAGCTCCTCGCCTGCGACTGCGCCCCGACGGAGCCG------CCC
GCCGCCGTCGCCATCGGCAGATGCGACGAGTTCCTCCTCCGCCAGCGGGTACGGATCACGGC-TCCCCCCTCACCTGCCT
TCTCCCTAATTCCTCCCCTCCCTCCCTCCCCAAAGAATCTCCTCCTACGATAGCAATCCGCTCTCGATTTTGATTTGGGA
TCACGACGGC-ACGGACGGCTTCTTGG--------ACTGCTCTGTTCTTACATGCTCTGCTTTCCGCAGGATTCCTCGGC
GTCGAGCGGGGCCAGCGGC------------GACGACAAGTTCGCGCCGCGGTTCGACGGGCTGCGCTTCATCGAGACGC
TCGTCACGGCGCACCGCTGAAAA--------TTCCCCCCTGCGGACTCTTTCCAGTCGTCTTCTTCGTGCGATTCGCGGG
GAGAGGCTGGCTGCTACCCTATTAATTCGGCGATTGGCGGCCAACGCGCCGCCGAATTTTTGCTACTACTAGGACAAATT
GAGGTTTTCCGTTTCTTTTTCTCCCTTTTGTTTCTCTTTGCTGATGACGATTATCGTCC-TATTGTTGTCGAGTTATGCG
ATTGAACTGGAACATTCAAGTGGGCATGTGATGTGATGAGCGTATGTACTTGTGCTAGCAT--TTGGTTCCTTACCCGAT
CTGTTATGCAAGCATGTTAGTATGATATGAGATGATTGATGGTCTGATTTCAGCTCCAAACTT--GCCATTCTCATGTAT
GGTAGGCCTGC------TGTCC-CTGCTTGTGGTTGGCCTCTTTCCGGAATTGTCCTTTTTCCCCTCTTTGCTGCACGCA
TATCACATGGCTCAATGTTTGCAGTGCATCCTGTCCATGGCTTTTGGGGTAAAGTTAGTAG---ATGGAGCCCCTGGATG
TATGGTAATGATTATGCTGATTATGCCTGGCCAAATTAGGACTAGTTTTAAAGCAAGGAGAGTGGTGGTAC---GTGGTC
GT------GTGATGTGGCTCCTTCCTTACCGTCCGTGTTTCCTTGCAGATTTGGCTAACGATTTCTAGCTCATCTTCACC
TGTTTTCGTTTTCT-----ATCACAAGTAGAATTCGTGTATCGCATCTTATAGCGTGCACTCG---TAGATTTGTATGAC
CAAGCTTTGGTTGGATGAAGGACAATATGCTAGTATA-------------------------------------------
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-AAATTCGATAGTACAATCCATATTAATTGACGCTGCTTCAATTAGCATACATCGCAGCGAGTTCATCACAAGGAGTCAA
GGA-----------------------------------------------------------------------------
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---------------GAGAACAATCTGCTATCAAGTTC-ATAATACAATAGATATTGGCGGGGTGTAGTATGAAATGTGA
GTTTGGGTTGGTACAAT--------------------------TCCACATCATGTTTCATTTCGAGGCTATCAAATGCAG
TAGCATGTCTAGTTCACGGACCGCAGATGAATGCATCCCAGAACATTAGTCATCCTCGTATCTCTTCATTCTAAACTGAG
CATTATGGATTTACCCTACTTCATGTCACTCC-AAGGAATTCATTCGTTCTTCTAGGGATTCTTTACAGAATGACCATGT
CTTGCAGAAACTGCATTATTGGACTGGAGTACCCTACATAACAAAACGGATTCTTGTGCTAAACGACCGAACAG
>chr2A_1
TTTACTTGTTGGGTCGTCCTTGTTTTGTAAAACTTTGTATCTCTTTCTTCTATAATATTCGCATGCAATTCTCATGCAAT
GGTTTGAATAAACTATATTAAACGAGAAAGAAGGGAACTTGTGTTCCCTTGAGC--AAATTGCGATTGTACTTTGAAAAG
TATGGTCCCCATGTCATGGTTCATTCTTGTTTGTGCTTTAGAAAGCTAGGATTACAAGGACTAGAGTTGTATTTTATTTA
TAAAAAGGAGTAGATGGCCCTTTAGTATATTGTCGTTAAATTTGTCCC----------------------------TTTC
ATTTTACAAATTTGTTACCGGCGACATCTACACGCCCATCCAACAGAGGGGCA----AGCTATTAATCACACAGATGAGA
AAATTC----GACACGTCATACAAGCCGTTGACCTCCGCCCCGTTCTTGTCGATCGAGAACAGGTTGTCACCCTGTTGGC
TAGGATCACAAGAAGTGAGCTGGCCCACCCGGGTTCGAGTCCTAAGCGGCCTGTTGGTGCTTAGAGTTTTCATCTATAAA
AATATACTTGCAAGGGTTAGTCCTGAGTGGTCTTGTTTTTTTTTTGGTCGACCCGCTCGCTGAC----------------
--------------GTCAGAACAGCCACCTCCGGTTC-CGGCCTTCCCTCTATCTCCACACCCTCCCGGGCACCGACGAC
CATCTCCCGCACTCGTCAACCCTTTGCCTCGCCTCAGCGTAGCGACGCCGCAGTCCCCGTCTGGCCGTCG-TCTCTGACT
TGTTCCTGGCTCGCGCTCACG----------------CCGACTCGGTGCTGCGCGTTTGTTCAGCGCGGATTATCAACCG
ACGCGCCAAAAATTTCCGGACACCTCGCTAATGGCAAAGCGGGCCCATCCGCCAGCGAAATCCACACCCCGTCCGTCCGT
CCGTTC---------------------TCCCGCCGCCGCCCGCGTCGACCGCGCCGCGCGGGCCTTTCCCGGACACGGCT
TCAACATTTCAATCCCGTTAAATTCCGCGCTCAAGTCCGGCCGCAGACAGAC---------------TATAAAAAATGCT
ACGCGGCTAGCCGTCACCTCCATTCCAGCCTGCCCTGCCCAAGCAAAGAATC----------------------------
CCGTCCCCACCAGCCAG-----GAGGAGGGGAAAGCGGCTGCTGGATCGACGATGATGTGGGGCGTCGCCGCCGCCGTCG
CCTCCGCGGCCGCCGTCGCCGTGGCCTCCGTCGCCGAGCTCCTCGCCTGCGACTGCGCCCCCACGGAGCCCGCCGCCGCC
GTCGCCGTCGCCGTCGGCAGATGCGACGAGTTCCTCCTCCGCCAGCGGGTACGGATCACGGCCTCCTCC----------T
TCTCCCCCAATCCCCCCCTCCCTCCCG-----AAGAATCTCCTCCTACGATAGCAATCCGGTCTTGATTTTGATTTGGGA
TCACGACGG------ACGGCTTCTTCAAATTTGAAACTGCTCTCTTCTTACGCGCTCTGCTTTCCGCAGGAATCCCCGGC
GTCGAGCGGGGGGAGCGGCGGCCG------GGACGACAAGTTCGCGCCGCGGTTCGACGGGCTGCGCTTCATCGAGACGC
TCGTCACGGCGCACCGCTGAAAA--------TTCCCCCGG--GGATTCTTTCCAGTCGTCTTCTTCGTGCGATTCGCGGG
GAGAGGCTGGCTGCTACCCTATTAATTCGGCGATTGGCGGCCAACGCGCCGCCAGATTTTTGCT---ACTAGGACAAATT
GAGGTTTTTCTTTCTTTCC-------------------------TGACGATTATCGTCCCTATTGTTGTTGAGTGATGCG
ATTGAATCGGAACCTTCAAGCGGGCATGTGATATGGTGAGCGTATGTACTTGTGCTAGCAT--TTGCTTCTTCACCCGAT
CTGTTATGCAAGCATGATAGTATGATATGAGATGATTGATGGCATGATTTCAGCTCCAAACTT--GCCATTCTCATGTAT
GGTAGTGGTAGGCCTGGTGTCG-CTGCTTGTGGTTGGCCTCCTTCCGGAATTGTCC-TTTTCCCCTCTTTGCTGCACACA
TATCACATGGCTCAATCTTTGCACCGCATCCTGTCCATGGCTTTTGGGGTAAAGTTAGTAG---ATGGAGCCCCTGGATG
TATGGTAATGATTATGCTGATTATGCCTCGCCAAATTAGAACTAGTTTTAAAGCAAGGAGAGTGGTGGTAC---GTGCTC
GT------ATGATGTGGCTCCTTCCTTACCGTCCATTTTTCCTTGCAGATTTGGCTAACTATCTCCGGCTCATCTTGACT
TGTTTTCGTCTTCT-----ACCACAAGTAGAATTCGTGTAT---------------------------------------
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>chr2D_642
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---------------CTCACGCCGACCAGCACGTCGCCCGACTCGGTGCTGCGCGTTTGTGCATGCTG-------AACCG
ACGCGCCAAAAATTTCCAGACACCTTGCTAATGGCAAACCGGGCCCATTCGCCAGCGAAATCCACACCCCGTCCGTCCGT
CCGTTC---------------------TCC---------------------------------------CGGACACGGCT
CCAGCATTTCAACCCCGTTAAATTCCGCGCTCAGGTCCGGCCGCGCCTTCCTTCCTGCAGCGC--TATATAAAAAACACT
ACGCGGCTAGCCGTCACCTCCGTTCCAGCCTGCCCTGCCCAAGCAAAGAACC------------------CCCCCTCGTG
CCGTCCCTACCAGCCAGCCGCCG-----------------------TCGACGATGATGTGGGGCGTCGCAGCCGCCGTCG
CCTCCGCGGCCGCCGTCGCCGTGGCCTCCGGCGCCGAGCTCCTCGCCTGCGACTGCGCCCCGACGGAGCCC------GCC
GCCGCCGTCGCCGTCGGCAGATGCGACGAGTTCCTCCTCCGCCAGCGGGTACGGATCACGGCCTCCTCCCTCACCCGCCT
TCTCCCTAAATCCTCCCCTCCCACCCTCCGCAAAGAATCTCCTCCTTCGATAGCAACCCGCTCTCGATTTTGATTTGGGA
TCACGACGGCGACGGACGGCTTCTTGG--------ACTGCTCTGTTCTTACATGTTCCGCTTTCCGCAGGAATCCTCGGC
GCCGAGCGGGGCGAGCGGCGGCTCCGGCACGGACGACAAGTTCGCGCCGCGGTTCGACGGCCTGCGCTTCATCGAGACGC
TCGTCACGGCGCACCGCTGAAATCCCCCTGTTTCCTCAGG--GGATTCTTTC---------TCTCCGTGCGATTCGCGGG
GAGAGGCGAGCTGCTACCCTATTGATTCGGCGATTGGCGGCCAACGCGCCGCCAGATTTTTGCT---ACTAGGACAAATT
GAGGTTTTTGGTTTCTTTTCTCCCCTT---TTTCTCTTTGCCGATGACGATTGTCGTCC-TATTGTTGTTGAGTGATGCG
ATTGAATTGGAACCTTCAAGTGGCT------TGTGATGATTGTATGTACTTTGCCAGCGCTGGTTCTTTACCTACCTGAT
CCGTCGTGCAAGCATGGTATGGTATGGT----------ATGGTATGATTTCACCTCCAAACTTT-GCCATTCTCGTGTGT
GGTAGGTCTGC------TGTCCTCTGCTTGTGGTTGGCCTCGTTCCGGGATTGCCC-CTTTCCCCACTTTGCTGCACGCG
TATCACACGGCTTGATGTTTGGGCTGCATCCTGTCCATGGCTTTTGGGGTGAAATTAGTAGCAGATAGGGCCCCTGGATG
TGTGGTGATGATTA--CTGATTATGCTTGGCCAAACTAAGATC--TTTTTAAGCAAAGATAGTGGTGAGAAATGGGAGTA
CTAGTATGATGATGTGGCTCCTTGCCGTCCATGTCTGCTTCCCT----GTTTGGCTAACCAGTTTCACCTCATCTTTACT
TGTTTC---TTTGTGTACCACAACAAGTAGAACTCGTTTTTCATGTCTTGTAGCGTGCACTTGTA---------------
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>chr2B_1787
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--------------------------------------ATGGTATGATTTCACCTCCAAACTTTTGCCATTCTCGTGTGT
GGTAGGCCTGC------TGTCCTCTGCTTGTGGTTGGCCTCGTTCCGGAATTGTCC-TTTCCCCCACTTTGCTGCACGCG
TATCACATGGCTCGTTGTTTGGGCTGCATCCTGTCCATGGCTTTTGGGGTAAAATTAGTAG---ATAGGGTCCATGGACG
TATGGCAATGATTA--CTGATTCGGCCTGGCCAAATTAAGATC--TTTTTAAGCAAAGGTAGTGGTGAGAAATGGTACTA
GT------GTGATGTGGCTCCTTGCCGTCCATGTCTGCGCCCCT----ATTTGGCTAACCAGCTTCACCTCATCTTTACT
TGTTTTTTTTTTCTGTACCACAACAAGTAGAACTCCTTTATCATGTCTTGTAGCGTGCACTTGCACTAGATTTTTATGAC
CAAGTTTTGGATTAAACACATCAAAAGAAGGGGTATGACTGTAGTTTTTGAAGATTTTGGGTTGTCGTAAACGTTCATCC
AAATCATTGTTTCTATACTGATTGGTTCATGAACACACATTGAGCACCATCCGAACCAGGAATTTGGCAAGGAATTTGGC
CAAATCCATTCGCACCTTCTATCTTCATTAACGTCAAGTGTTACAAACATCAAGAAAGAATTACCCAACATAATCTGCTA
TACAAATAAGTCAACAGCACAATAGATACTGGCTAGATGCCTTGGCGCAAATGAGTGGAGAAAAACATGGGTCTGGGCAG
TCTGCTCACACCTTATATATGCATCACGTGTAGTGATACAATGGTCTTCATCAAACATTACTTTTCAATGTGGAAATCAT
TTTAGATGACAACAGGAGAACAGTCTGCTATGGAGTTTAATAATACAATGTTGACAGGATCGATCGAAC---AAAAGTGA
ATATCGGTTAGCAAAAGGACAGCCATTATATTTTACTCGCTACTCCACATCAAA-TTCATTTCACACCTATCATATCATT
TTT------TAGTTCACCGACTCCAGATGAATGCATCCCAGAACATTCGG-----------------------AAATGAG
CATAATGGATTTACCCTACTTCATGTCACTCCCAAGGAATTCATTCGCCCTTCTAGGGATGCTTTACAGAATGACCATGT
CTTGCAGAAAATGCATTATTGGAGTGAAGCAACCTAC-------------------------------------
>SNPs
---------------S--SS------SS----------S---------------S----SS-------------------
----------------------------------S----------S----S-SSSS--S--S-SS--S-----S------
-S---S--S-----------S----S-S--------SS---S--------------------S---S-----S--S-S--
S-S-SSSS-SS-S-S------S-----------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
S-S-----------S--S----------S-----S-S--SSSSS-SSSSS-S-SSSS--S----S--------S---S--
--SSSSSSSS---------------S-----S------S-----------S-----------------------------
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------------------------------------------------------------SSS-SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS----SS--S----------S---S----------------S----SS-------------------
-----------------------S-----------S-S-----------S---S-SS-SS-SSSSSSS-SS---------
-------S----S-----------------S-----S----------------------S----S----S-S-S------
-------------------------------SS---------S-------------S----S-----------S-S--SS
---SSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------SS-----
--S------------------------------------------------------S-----SS----S-----S----
--------------S------------------------------------SSSSSSSSSSSSSSSSSSS--------SS
-----------------SS-SS-------------S--------------------------------------------
----------------------------------------------------------------------S------S--
------------S-----------------------------------------------------S--------S----
---------S-------------------S--------------------------------------------------
-----------------------------------------------------------------------S--------
------------S-------------------------------------------------------------------
--------------------------------------SSSS---S----------------------------------
-----------------------------------------------------SS---------SSS-------------
--------S----------SSS-----SSS-----------S---------------------------S----S-----
------S------S----------------------------------------------------S-------------
----------------S--------------------------S------------------------------------
-----------------------------------------S--------------S-----------------------
-----------------------S--------------------------------------------------------
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----------------------------------S------------------------S-----S----------S--S
--------------------S---------------------SSS----S-----------S-----------S------
----S-----S-SS-SS-SSSSS--SSSSSSS----S-------------------------------------------
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-----S-SS-S-S--SS--S--S--S---S---SSSSS-SSSSS-SSSSS--SSSS--SSSSSS-SSSSSS-SSSSS-S-
SSS-----------------------------------------------------------------------------
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----------------------S--------SS----S-----------SSSS-SS--SSS-S-SS-SSSSS---S----
S-S-S----S-S-S--S-----------------------------------SSS--------SSSS------S--SSSS
-SSSSSSSS--------S---SS------------------------S-SSSSSSSSSSSSSSSSSSSSSSSS--S----
---S-------------------------------------------SS-----------S-------------------
----------S------------S--S--S-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_701
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-----------------------------------------CCTTCCCTCTATCCCCACCA-------------------
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>reverse_2694
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-----------------------------------------------------CGCAGCGAGTTCATCACAAG-------
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