Multiple sequence alignment - TraesCS2B01G494800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G494800 chr2B 100.000 2459 0 0 1 2459 691781943 691779485 0.000000e+00 4542
1 TraesCS2B01G494800 chr2B 97.917 432 8 1 1 431 758378990 758379421 0.000000e+00 747
2 TraesCS2B01G494800 chr2B 97.685 432 10 0 1 432 260655853 260655422 0.000000e+00 743
3 TraesCS2B01G494800 chr2B 91.286 241 13 3 462 702 691787715 691787483 3.050000e-84 322
4 TraesCS2B01G494800 chr2A 91.916 1002 57 16 697 1680 713932597 713931602 0.000000e+00 1380
5 TraesCS2B01G494800 chr2A 89.043 721 39 12 1747 2459 713931417 713930729 0.000000e+00 857
6 TraesCS2B01G494800 chr2A 91.633 251 15 3 453 702 713932872 713932627 2.340000e-90 342
7 TraesCS2B01G494800 chr2D 93.620 627 39 1 1134 1760 575763849 575763224 0.000000e+00 935
8 TraesCS2B01G494800 chr2D 88.138 725 56 12 1747 2459 575763279 575762573 0.000000e+00 835
9 TraesCS2B01G494800 chr2D 83.407 452 61 11 432 878 575764295 575763853 8.190000e-110 407
10 TraesCS2B01G494800 chr4B 98.144 431 8 0 1 431 507986076 507985646 0.000000e+00 752
11 TraesCS2B01G494800 chr4B 97.685 432 10 0 1 432 381688762 381688331 0.000000e+00 743
12 TraesCS2B01G494800 chr4B 97.680 431 10 0 1 431 24859150 24858720 0.000000e+00 741
13 TraesCS2B01G494800 chr7A 97.680 431 10 0 1 431 696645569 696645999 0.000000e+00 741
14 TraesCS2B01G494800 chr1B 97.674 430 10 0 1 430 592034436 592034007 0.000000e+00 739
15 TraesCS2B01G494800 chr1B 97.669 429 9 1 1 429 421457167 421457594 0.000000e+00 736
16 TraesCS2B01G494800 chr3B 97.664 428 10 0 1 428 721702 722129 0.000000e+00 736


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G494800 chr2B 691779485 691781943 2458 True 4542.000000 4542 100.000000 1 2459 1 chr2B.!!$R2 2458
1 TraesCS2B01G494800 chr2A 713930729 713932872 2143 True 859.666667 1380 90.864000 453 2459 3 chr2A.!!$R1 2006
2 TraesCS2B01G494800 chr2D 575762573 575764295 1722 True 725.666667 935 88.388333 432 2459 3 chr2D.!!$R1 2027

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 239 0.035152 CAAGGCACACCATCAGGCTA 60.035 55.0 0.00 0.0 39.06 3.93 F
239 240 0.254178 AAGGCACACCATCAGGCTAG 59.746 55.0 0.00 0.0 39.06 3.42 F
241 242 0.462759 GGCACACCATCAGGCTAGAC 60.463 60.0 0.00 0.0 39.06 2.59 F
992 1039 0.526211 CCTAGCGCACACACAGAGTA 59.474 55.0 11.47 0.0 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1124 1171 0.606604 TGGAGCTTCCGGTGTAGAAC 59.393 55.000 0.0 0.0 40.17 3.01 R
1128 1175 0.759959 TTGTTGGAGCTTCCGGTGTA 59.240 50.000 0.0 0.0 40.17 2.90 R
1131 1178 0.818040 GTGTTGTTGGAGCTTCCGGT 60.818 55.000 0.0 0.0 40.17 5.28 R
1874 2087 1.539388 TGCCATGCCGTCTTTGTTTAG 59.461 47.619 0.0 0.0 0.00 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.074970 AGAAGTTTATGGACTGCTGTTGG 58.925 43.478 0.00 0.00 34.15 3.77
23 24 2.162681 AGTTTATGGACTGCTGTTGGC 58.837 47.619 0.00 0.00 42.22 4.52
24 25 1.135689 GTTTATGGACTGCTGTTGGCG 60.136 52.381 0.00 0.00 45.43 5.69
30 31 2.949106 CTGCTGTTGGCGGTGAAG 59.051 61.111 0.00 0.00 45.43 3.02
31 32 1.597854 CTGCTGTTGGCGGTGAAGA 60.598 57.895 0.00 0.00 45.43 2.87
32 33 0.957395 CTGCTGTTGGCGGTGAAGAT 60.957 55.000 0.00 0.00 45.43 2.40
33 34 0.537143 TGCTGTTGGCGGTGAAGATT 60.537 50.000 0.00 0.00 45.43 2.40
34 35 0.109597 GCTGTTGGCGGTGAAGATTG 60.110 55.000 0.00 0.00 0.00 2.67
35 36 0.109597 CTGTTGGCGGTGAAGATTGC 60.110 55.000 0.00 0.00 0.00 3.56
36 37 0.821301 TGTTGGCGGTGAAGATTGCA 60.821 50.000 0.00 0.00 0.00 4.08
37 38 0.109597 GTTGGCGGTGAAGATTGCAG 60.110 55.000 0.00 0.00 0.00 4.41
38 39 1.865788 TTGGCGGTGAAGATTGCAGC 61.866 55.000 0.00 0.00 0.00 5.25
39 40 2.042831 GGCGGTGAAGATTGCAGCT 61.043 57.895 0.00 0.00 0.00 4.24
40 41 1.427020 GCGGTGAAGATTGCAGCTC 59.573 57.895 0.00 0.00 0.00 4.09
41 42 1.300971 GCGGTGAAGATTGCAGCTCA 61.301 55.000 0.00 0.00 0.00 4.26
42 43 1.159285 CGGTGAAGATTGCAGCTCAA 58.841 50.000 0.00 1.85 39.32 3.02
43 44 1.135859 CGGTGAAGATTGCAGCTCAAC 60.136 52.381 0.00 0.00 37.53 3.18
44 45 2.157738 GGTGAAGATTGCAGCTCAACT 58.842 47.619 0.00 0.27 37.53 3.16
45 46 3.338249 GGTGAAGATTGCAGCTCAACTA 58.662 45.455 0.00 0.00 37.53 2.24
46 47 3.126000 GGTGAAGATTGCAGCTCAACTAC 59.874 47.826 0.00 0.00 37.53 2.73
47 48 3.748048 GTGAAGATTGCAGCTCAACTACA 59.252 43.478 0.00 0.00 37.53 2.74
48 49 4.394300 GTGAAGATTGCAGCTCAACTACAT 59.606 41.667 0.00 0.00 37.53 2.29
49 50 4.393990 TGAAGATTGCAGCTCAACTACATG 59.606 41.667 0.00 0.00 37.53 3.21
50 51 3.947868 AGATTGCAGCTCAACTACATGT 58.052 40.909 2.69 2.69 37.53 3.21
51 52 3.688185 AGATTGCAGCTCAACTACATGTG 59.312 43.478 9.11 0.93 37.53 3.21
52 53 1.159285 TGCAGCTCAACTACATGTGC 58.841 50.000 9.11 1.54 39.47 4.57
53 54 1.159285 GCAGCTCAACTACATGTGCA 58.841 50.000 9.11 0.00 41.12 4.57
54 55 1.129998 GCAGCTCAACTACATGTGCAG 59.870 52.381 9.11 0.62 41.12 4.41
55 56 1.736126 CAGCTCAACTACATGTGCAGG 59.264 52.381 9.11 0.00 41.12 4.85
56 57 1.625315 AGCTCAACTACATGTGCAGGA 59.375 47.619 9.11 0.31 41.12 3.86
57 58 2.238144 AGCTCAACTACATGTGCAGGAT 59.762 45.455 9.11 0.00 41.12 3.24
58 59 2.611292 GCTCAACTACATGTGCAGGATC 59.389 50.000 9.11 0.00 39.10 3.36
59 60 3.201290 CTCAACTACATGTGCAGGATCC 58.799 50.000 9.11 2.48 0.00 3.36
60 61 1.935873 CAACTACATGTGCAGGATCCG 59.064 52.381 9.11 2.47 0.00 4.18
61 62 1.485124 ACTACATGTGCAGGATCCGA 58.515 50.000 9.11 0.00 0.00 4.55
62 63 1.831106 ACTACATGTGCAGGATCCGAA 59.169 47.619 9.11 0.00 0.00 4.30
63 64 2.159043 ACTACATGTGCAGGATCCGAAG 60.159 50.000 9.11 1.57 0.00 3.79
64 65 0.615331 ACATGTGCAGGATCCGAAGT 59.385 50.000 5.98 0.00 0.00 3.01
65 66 1.003580 ACATGTGCAGGATCCGAAGTT 59.996 47.619 5.98 0.00 0.00 2.66
66 67 2.086869 CATGTGCAGGATCCGAAGTTT 58.913 47.619 5.98 0.00 0.00 2.66
67 68 2.270352 TGTGCAGGATCCGAAGTTTT 57.730 45.000 5.98 0.00 0.00 2.43
68 69 2.582052 TGTGCAGGATCCGAAGTTTTT 58.418 42.857 5.98 0.00 0.00 1.94
69 70 2.293122 TGTGCAGGATCCGAAGTTTTTG 59.707 45.455 5.98 0.00 0.00 2.44
70 71 2.552315 GTGCAGGATCCGAAGTTTTTGA 59.448 45.455 5.98 0.00 0.00 2.69
71 72 2.552315 TGCAGGATCCGAAGTTTTTGAC 59.448 45.455 5.98 0.00 0.00 3.18
72 73 2.552315 GCAGGATCCGAAGTTTTTGACA 59.448 45.455 5.98 0.00 0.00 3.58
73 74 3.365364 GCAGGATCCGAAGTTTTTGACAG 60.365 47.826 5.98 0.00 0.00 3.51
74 75 4.065088 CAGGATCCGAAGTTTTTGACAGA 58.935 43.478 5.98 0.00 0.00 3.41
75 76 4.065789 AGGATCCGAAGTTTTTGACAGAC 58.934 43.478 5.98 0.00 0.00 3.51
76 77 4.065789 GGATCCGAAGTTTTTGACAGACT 58.934 43.478 0.00 0.00 0.00 3.24
77 78 4.152580 GGATCCGAAGTTTTTGACAGACTC 59.847 45.833 0.00 0.00 0.00 3.36
78 79 4.402056 TCCGAAGTTTTTGACAGACTCT 57.598 40.909 0.00 0.00 0.00 3.24
79 80 4.766375 TCCGAAGTTTTTGACAGACTCTT 58.234 39.130 0.00 0.00 0.00 2.85
80 81 5.909477 TCCGAAGTTTTTGACAGACTCTTA 58.091 37.500 0.00 0.00 0.00 2.10
81 82 6.342906 TCCGAAGTTTTTGACAGACTCTTAA 58.657 36.000 0.00 0.00 0.00 1.85
82 83 6.479001 TCCGAAGTTTTTGACAGACTCTTAAG 59.521 38.462 0.00 0.00 0.00 1.85
83 84 6.258068 CCGAAGTTTTTGACAGACTCTTAAGT 59.742 38.462 1.63 0.00 38.88 2.24
84 85 7.119997 CGAAGTTTTTGACAGACTCTTAAGTG 58.880 38.462 1.63 2.37 35.28 3.16
85 86 6.364945 AGTTTTTGACAGACTCTTAAGTGC 57.635 37.500 1.63 0.00 35.28 4.40
86 87 6.116126 AGTTTTTGACAGACTCTTAAGTGCT 58.884 36.000 1.63 0.00 35.28 4.40
87 88 6.599638 AGTTTTTGACAGACTCTTAAGTGCTT 59.400 34.615 1.63 0.00 35.28 3.91
88 89 5.991328 TTTGACAGACTCTTAAGTGCTTG 57.009 39.130 1.63 5.07 35.28 4.01
89 90 3.393800 TGACAGACTCTTAAGTGCTTGC 58.606 45.455 1.63 1.00 35.28 4.01
90 91 2.739379 GACAGACTCTTAAGTGCTTGCC 59.261 50.000 1.63 0.00 35.28 4.52
91 92 2.370189 ACAGACTCTTAAGTGCTTGCCT 59.630 45.455 1.63 0.00 35.28 4.75
92 93 2.999355 CAGACTCTTAAGTGCTTGCCTC 59.001 50.000 1.63 0.00 35.28 4.70
93 94 2.634940 AGACTCTTAAGTGCTTGCCTCA 59.365 45.455 1.63 0.00 35.28 3.86
94 95 2.999355 GACTCTTAAGTGCTTGCCTCAG 59.001 50.000 1.63 0.00 35.28 3.35
95 96 1.736681 CTCTTAAGTGCTTGCCTCAGC 59.263 52.381 1.63 0.00 40.55 4.26
96 97 0.445436 CTTAAGTGCTTGCCTCAGCG 59.555 55.000 0.00 0.00 43.37 5.18
97 98 0.955428 TTAAGTGCTTGCCTCAGCGG 60.955 55.000 0.00 0.00 43.37 5.52
98 99 2.111999 TAAGTGCTTGCCTCAGCGGT 62.112 55.000 0.00 0.00 43.37 5.68
99 100 2.965716 AAGTGCTTGCCTCAGCGGTT 62.966 55.000 0.00 0.00 43.37 4.44
100 101 2.979676 TGCTTGCCTCAGCGGTTG 60.980 61.111 0.00 0.00 43.37 3.77
101 102 2.980233 GCTTGCCTCAGCGGTTGT 60.980 61.111 0.00 0.00 44.31 3.32
102 103 1.671054 GCTTGCCTCAGCGGTTGTA 60.671 57.895 0.00 0.00 44.31 2.41
103 104 1.912371 GCTTGCCTCAGCGGTTGTAC 61.912 60.000 0.00 0.00 44.31 2.90
104 105 0.602638 CTTGCCTCAGCGGTTGTACA 60.603 55.000 0.00 0.00 44.31 2.90
105 106 0.179043 TTGCCTCAGCGGTTGTACAA 60.179 50.000 3.59 3.59 44.31 2.41
106 107 0.882927 TGCCTCAGCGGTTGTACAAC 60.883 55.000 27.20 27.20 44.31 3.32
123 124 9.158233 GTTGTACAACCTGATATTACTAAAGCA 57.842 33.333 25.31 0.00 35.36 3.91
124 125 8.942338 TGTACAACCTGATATTACTAAAGCAG 57.058 34.615 0.00 0.00 0.00 4.24
125 126 7.985184 TGTACAACCTGATATTACTAAAGCAGG 59.015 37.037 0.00 0.00 46.30 4.85
129 130 6.771188 CCTGATATTACTAAAGCAGGTTCG 57.229 41.667 0.00 0.00 38.41 3.95
130 131 6.281405 CCTGATATTACTAAAGCAGGTTCGT 58.719 40.000 0.00 0.00 38.41 3.85
131 132 6.201044 CCTGATATTACTAAAGCAGGTTCGTG 59.799 42.308 0.00 0.00 38.41 4.35
132 133 6.046593 TGATATTACTAAAGCAGGTTCGTGG 58.953 40.000 0.00 0.00 0.00 4.94
133 134 2.754946 TACTAAAGCAGGTTCGTGGG 57.245 50.000 0.00 0.00 0.00 4.61
134 135 0.605589 ACTAAAGCAGGTTCGTGGGC 60.606 55.000 0.00 0.00 0.00 5.36
135 136 0.321653 CTAAAGCAGGTTCGTGGGCT 60.322 55.000 0.00 0.00 38.45 5.19
136 137 0.978151 TAAAGCAGGTTCGTGGGCTA 59.022 50.000 0.00 0.00 35.11 3.93
137 138 0.328258 AAAGCAGGTTCGTGGGCTAT 59.672 50.000 0.00 0.00 35.11 2.97
138 139 0.107654 AAGCAGGTTCGTGGGCTATC 60.108 55.000 0.00 0.00 35.11 2.08
139 140 1.523938 GCAGGTTCGTGGGCTATCC 60.524 63.158 0.00 0.00 0.00 2.59
140 141 1.227263 CAGGTTCGTGGGCTATCCG 60.227 63.158 0.00 0.00 38.76 4.18
141 142 2.108362 GGTTCGTGGGCTATCCGG 59.892 66.667 0.00 0.00 38.76 5.14
142 143 2.588034 GTTCGTGGGCTATCCGGC 60.588 66.667 0.00 0.00 38.76 6.13
152 153 1.443802 GCTATCCGGCCAATCTTAGC 58.556 55.000 2.24 3.98 0.00 3.09
153 154 1.002544 GCTATCCGGCCAATCTTAGCT 59.997 52.381 2.24 0.00 31.60 3.32
154 155 2.693069 CTATCCGGCCAATCTTAGCTG 58.307 52.381 2.24 0.00 35.04 4.24
155 156 0.536006 ATCCGGCCAATCTTAGCTGC 60.536 55.000 2.24 0.00 33.87 5.25
156 157 1.153086 CCGGCCAATCTTAGCTGCT 60.153 57.895 7.57 7.57 33.87 4.24
157 158 0.106708 CCGGCCAATCTTAGCTGCTA 59.893 55.000 5.02 5.02 33.87 3.49
158 159 1.271054 CCGGCCAATCTTAGCTGCTAT 60.271 52.381 10.64 0.00 33.87 2.97
159 160 2.072298 CGGCCAATCTTAGCTGCTATC 58.928 52.381 10.64 0.00 0.00 2.08
160 161 2.431454 GGCCAATCTTAGCTGCTATCC 58.569 52.381 10.64 0.58 0.00 2.59
161 162 2.224621 GGCCAATCTTAGCTGCTATCCA 60.225 50.000 10.64 0.00 0.00 3.41
162 163 3.072944 GCCAATCTTAGCTGCTATCCAG 58.927 50.000 10.64 5.39 44.67 3.86
163 164 3.244353 GCCAATCTTAGCTGCTATCCAGA 60.244 47.826 10.64 10.81 44.64 3.86
164 165 4.314121 CCAATCTTAGCTGCTATCCAGAC 58.686 47.826 10.64 0.00 44.64 3.51
165 166 4.314121 CAATCTTAGCTGCTATCCAGACC 58.686 47.826 10.64 0.00 44.64 3.85
166 167 3.032265 TCTTAGCTGCTATCCAGACCA 57.968 47.619 10.64 0.00 44.64 4.02
167 168 2.695666 TCTTAGCTGCTATCCAGACCAC 59.304 50.000 10.64 0.00 44.64 4.16
168 169 1.032794 TAGCTGCTATCCAGACCACG 58.967 55.000 5.02 0.00 44.64 4.94
169 170 1.884926 GCTGCTATCCAGACCACGC 60.885 63.158 0.00 0.00 44.64 5.34
170 171 1.227380 CTGCTATCCAGACCACGCC 60.227 63.158 0.00 0.00 44.64 5.68
171 172 1.680522 CTGCTATCCAGACCACGCCT 61.681 60.000 0.00 0.00 44.64 5.52
172 173 1.264749 TGCTATCCAGACCACGCCTT 61.265 55.000 0.00 0.00 0.00 4.35
173 174 0.530870 GCTATCCAGACCACGCCTTC 60.531 60.000 0.00 0.00 0.00 3.46
174 175 0.824109 CTATCCAGACCACGCCTTCA 59.176 55.000 0.00 0.00 0.00 3.02
175 176 1.414181 CTATCCAGACCACGCCTTCAT 59.586 52.381 0.00 0.00 0.00 2.57
176 177 0.620556 ATCCAGACCACGCCTTCATT 59.379 50.000 0.00 0.00 0.00 2.57
177 178 0.400213 TCCAGACCACGCCTTCATTT 59.600 50.000 0.00 0.00 0.00 2.32
178 179 0.804989 CCAGACCACGCCTTCATTTC 59.195 55.000 0.00 0.00 0.00 2.17
179 180 1.522668 CAGACCACGCCTTCATTTCA 58.477 50.000 0.00 0.00 0.00 2.69
180 181 2.086869 CAGACCACGCCTTCATTTCAT 58.913 47.619 0.00 0.00 0.00 2.57
181 182 2.096496 CAGACCACGCCTTCATTTCATC 59.904 50.000 0.00 0.00 0.00 2.92
182 183 1.401905 GACCACGCCTTCATTTCATCC 59.598 52.381 0.00 0.00 0.00 3.51
183 184 1.271871 ACCACGCCTTCATTTCATCCA 60.272 47.619 0.00 0.00 0.00 3.41
184 185 2.026641 CCACGCCTTCATTTCATCCAT 58.973 47.619 0.00 0.00 0.00 3.41
185 186 3.213506 CCACGCCTTCATTTCATCCATA 58.786 45.455 0.00 0.00 0.00 2.74
186 187 3.822735 CCACGCCTTCATTTCATCCATAT 59.177 43.478 0.00 0.00 0.00 1.78
187 188 5.003160 CCACGCCTTCATTTCATCCATATA 58.997 41.667 0.00 0.00 0.00 0.86
188 189 5.122869 CCACGCCTTCATTTCATCCATATAG 59.877 44.000 0.00 0.00 0.00 1.31
189 190 5.934043 CACGCCTTCATTTCATCCATATAGA 59.066 40.000 0.00 0.00 0.00 1.98
190 191 6.427853 CACGCCTTCATTTCATCCATATAGAA 59.572 38.462 0.00 0.00 0.00 2.10
191 192 7.120285 CACGCCTTCATTTCATCCATATAGAAT 59.880 37.037 0.00 0.00 0.00 2.40
192 193 8.321353 ACGCCTTCATTTCATCCATATAGAATA 58.679 33.333 0.00 0.00 0.00 1.75
193 194 8.607459 CGCCTTCATTTCATCCATATAGAATAC 58.393 37.037 0.00 0.00 0.00 1.89
194 195 9.678260 GCCTTCATTTCATCCATATAGAATACT 57.322 33.333 0.00 0.00 0.00 2.12
202 203 9.494271 TTCATCCATATAGAATACTCAAAGTGC 57.506 33.333 0.00 0.00 0.00 4.40
203 204 8.650490 TCATCCATATAGAATACTCAAAGTGCA 58.350 33.333 0.00 0.00 0.00 4.57
204 205 8.715998 CATCCATATAGAATACTCAAAGTGCAC 58.284 37.037 9.40 9.40 0.00 4.57
205 206 7.791029 TCCATATAGAATACTCAAAGTGCACA 58.209 34.615 21.04 0.00 0.00 4.57
206 207 7.928167 TCCATATAGAATACTCAAAGTGCACAG 59.072 37.037 21.04 10.09 0.00 3.66
207 208 7.928167 CCATATAGAATACTCAAAGTGCACAGA 59.072 37.037 21.04 12.67 0.00 3.41
208 209 9.317936 CATATAGAATACTCAAAGTGCACAGAA 57.682 33.333 21.04 0.07 0.00 3.02
209 210 7.840342 ATAGAATACTCAAAGTGCACAGAAG 57.160 36.000 21.04 12.71 0.00 2.85
210 211 5.615289 AGAATACTCAAAGTGCACAGAAGT 58.385 37.500 21.04 17.56 0.00 3.01
211 212 5.698545 AGAATACTCAAAGTGCACAGAAGTC 59.301 40.000 21.04 8.47 0.00 3.01
212 213 3.550437 ACTCAAAGTGCACAGAAGTCT 57.450 42.857 21.04 0.00 0.00 3.24
214 215 3.118629 ACTCAAAGTGCACAGAAGTCTGA 60.119 43.478 21.04 9.06 46.59 3.27
215 216 3.872696 TCAAAGTGCACAGAAGTCTGAA 58.127 40.909 21.04 0.00 46.59 3.02
216 217 4.454678 TCAAAGTGCACAGAAGTCTGAAT 58.545 39.130 21.04 0.00 46.59 2.57
217 218 4.883585 TCAAAGTGCACAGAAGTCTGAATT 59.116 37.500 21.04 0.00 46.59 2.17
218 219 5.357878 TCAAAGTGCACAGAAGTCTGAATTT 59.642 36.000 21.04 3.00 46.59 1.82
219 220 5.429957 AAGTGCACAGAAGTCTGAATTTC 57.570 39.130 21.04 2.25 46.59 2.17
220 221 4.454678 AGTGCACAGAAGTCTGAATTTCA 58.545 39.130 21.04 0.00 46.59 2.69
221 222 4.883585 AGTGCACAGAAGTCTGAATTTCAA 59.116 37.500 21.04 0.00 46.59 2.69
222 223 5.008415 AGTGCACAGAAGTCTGAATTTCAAG 59.992 40.000 21.04 0.00 46.59 3.02
223 224 4.276678 TGCACAGAAGTCTGAATTTCAAGG 59.723 41.667 15.15 0.00 46.59 3.61
224 225 4.791974 CACAGAAGTCTGAATTTCAAGGC 58.208 43.478 15.15 0.00 46.59 4.35
225 226 4.276678 CACAGAAGTCTGAATTTCAAGGCA 59.723 41.667 15.15 0.00 46.59 4.75
226 227 4.276926 ACAGAAGTCTGAATTTCAAGGCAC 59.723 41.667 15.15 0.00 46.59 5.01
227 228 4.276678 CAGAAGTCTGAATTTCAAGGCACA 59.723 41.667 1.88 0.00 46.59 4.57
228 229 4.276926 AGAAGTCTGAATTTCAAGGCACAC 59.723 41.667 0.01 0.00 0.00 3.82
229 230 2.887152 AGTCTGAATTTCAAGGCACACC 59.113 45.455 0.01 0.00 0.00 4.16
230 231 2.622942 GTCTGAATTTCAAGGCACACCA 59.377 45.455 0.01 0.00 39.06 4.17
231 232 3.256631 GTCTGAATTTCAAGGCACACCAT 59.743 43.478 0.01 0.00 39.06 3.55
232 233 3.507233 TCTGAATTTCAAGGCACACCATC 59.493 43.478 0.01 0.00 39.06 3.51
233 234 3.229293 TGAATTTCAAGGCACACCATCA 58.771 40.909 0.00 0.00 39.06 3.07
234 235 3.256383 TGAATTTCAAGGCACACCATCAG 59.744 43.478 0.00 0.00 39.06 2.90
235 236 1.619654 TTTCAAGGCACACCATCAGG 58.380 50.000 0.00 0.00 39.06 3.86
236 237 0.895100 TTCAAGGCACACCATCAGGC 60.895 55.000 0.00 0.00 39.06 4.85
237 238 1.303888 CAAGGCACACCATCAGGCT 60.304 57.895 0.00 0.00 39.06 4.58
238 239 0.035152 CAAGGCACACCATCAGGCTA 60.035 55.000 0.00 0.00 39.06 3.93
239 240 0.254178 AAGGCACACCATCAGGCTAG 59.746 55.000 0.00 0.00 39.06 3.42
240 241 0.618680 AGGCACACCATCAGGCTAGA 60.619 55.000 0.00 0.00 39.06 2.43
241 242 0.462759 GGCACACCATCAGGCTAGAC 60.463 60.000 0.00 0.00 39.06 2.59
242 243 0.539051 GCACACCATCAGGCTAGACT 59.461 55.000 0.00 0.00 39.06 3.24
243 244 1.065854 GCACACCATCAGGCTAGACTT 60.066 52.381 0.00 0.00 39.06 3.01
244 245 2.625737 CACACCATCAGGCTAGACTTG 58.374 52.381 0.00 0.00 39.06 3.16
245 246 1.065854 ACACCATCAGGCTAGACTTGC 60.066 52.381 0.00 0.00 39.06 4.01
246 247 1.209019 CACCATCAGGCTAGACTTGCT 59.791 52.381 0.00 0.00 39.06 3.91
247 248 1.209019 ACCATCAGGCTAGACTTGCTG 59.791 52.381 0.00 5.63 39.06 4.41
248 249 1.209019 CCATCAGGCTAGACTTGCTGT 59.791 52.381 0.00 0.00 0.00 4.40
249 250 2.355513 CCATCAGGCTAGACTTGCTGTT 60.356 50.000 0.00 0.00 0.00 3.16
250 251 3.118629 CCATCAGGCTAGACTTGCTGTTA 60.119 47.826 0.00 0.00 0.00 2.41
251 252 4.507710 CATCAGGCTAGACTTGCTGTTAA 58.492 43.478 0.00 0.00 0.00 2.01
252 253 4.617253 TCAGGCTAGACTTGCTGTTAAA 57.383 40.909 0.00 0.00 0.00 1.52
253 254 4.569943 TCAGGCTAGACTTGCTGTTAAAG 58.430 43.478 0.00 0.00 0.00 1.85
254 255 4.040461 TCAGGCTAGACTTGCTGTTAAAGT 59.960 41.667 0.00 0.00 40.54 2.66
255 256 4.153117 CAGGCTAGACTTGCTGTTAAAGTG 59.847 45.833 0.00 0.00 37.98 3.16
256 257 3.120165 GGCTAGACTTGCTGTTAAAGTGC 60.120 47.826 8.78 0.00 37.98 4.40
257 258 3.498397 GCTAGACTTGCTGTTAAAGTGCA 59.502 43.478 1.32 0.00 37.98 4.57
258 259 4.024048 GCTAGACTTGCTGTTAAAGTGCAA 60.024 41.667 1.32 9.59 43.25 4.08
266 267 5.768317 TGCTGTTAAAGTGCAAGATAAACC 58.232 37.500 0.00 0.00 33.48 3.27
267 268 5.534654 TGCTGTTAAAGTGCAAGATAAACCT 59.465 36.000 0.00 0.00 33.48 3.50
268 269 6.040391 TGCTGTTAAAGTGCAAGATAAACCTT 59.960 34.615 0.00 0.00 33.48 3.50
269 270 6.923508 GCTGTTAAAGTGCAAGATAAACCTTT 59.076 34.615 0.00 0.00 0.00 3.11
270 271 7.438160 GCTGTTAAAGTGCAAGATAAACCTTTT 59.562 33.333 0.00 0.00 0.00 2.27
271 272 9.959749 CTGTTAAAGTGCAAGATAAACCTTTTA 57.040 29.630 0.00 0.00 0.00 1.52
272 273 9.959749 TGTTAAAGTGCAAGATAAACCTTTTAG 57.040 29.630 0.00 0.00 0.00 1.85
273 274 8.912658 GTTAAAGTGCAAGATAAACCTTTTAGC 58.087 33.333 0.00 0.00 0.00 3.09
274 275 6.901081 AAGTGCAAGATAAACCTTTTAGCT 57.099 33.333 0.00 0.00 0.00 3.32
275 276 6.502136 AGTGCAAGATAAACCTTTTAGCTC 57.498 37.500 0.00 0.00 0.00 4.09
276 277 6.241645 AGTGCAAGATAAACCTTTTAGCTCT 58.758 36.000 0.00 0.00 0.00 4.09
277 278 7.394816 AGTGCAAGATAAACCTTTTAGCTCTA 58.605 34.615 0.00 0.00 0.00 2.43
278 279 7.334671 AGTGCAAGATAAACCTTTTAGCTCTAC 59.665 37.037 0.00 0.00 0.00 2.59
279 280 7.334671 GTGCAAGATAAACCTTTTAGCTCTACT 59.665 37.037 0.00 0.00 0.00 2.57
280 281 7.883311 TGCAAGATAAACCTTTTAGCTCTACTT 59.117 33.333 0.00 0.00 0.00 2.24
281 282 8.178313 GCAAGATAAACCTTTTAGCTCTACTTG 58.822 37.037 0.00 0.00 33.94 3.16
282 283 7.851387 AGATAAACCTTTTAGCTCTACTTGC 57.149 36.000 0.00 0.00 0.00 4.01
283 284 6.824196 AGATAAACCTTTTAGCTCTACTTGCC 59.176 38.462 0.00 0.00 0.00 4.52
284 285 4.642466 AACCTTTTAGCTCTACTTGCCT 57.358 40.909 0.00 0.00 0.00 4.75
285 286 5.757099 AACCTTTTAGCTCTACTTGCCTA 57.243 39.130 0.00 0.00 0.00 3.93
286 287 5.087391 ACCTTTTAGCTCTACTTGCCTAC 57.913 43.478 0.00 0.00 0.00 3.18
287 288 4.530946 ACCTTTTAGCTCTACTTGCCTACA 59.469 41.667 0.00 0.00 0.00 2.74
288 289 5.189934 ACCTTTTAGCTCTACTTGCCTACAT 59.810 40.000 0.00 0.00 0.00 2.29
289 290 6.116126 CCTTTTAGCTCTACTTGCCTACATT 58.884 40.000 0.00 0.00 0.00 2.71
290 291 6.258947 CCTTTTAGCTCTACTTGCCTACATTC 59.741 42.308 0.00 0.00 0.00 2.67
291 292 5.932619 TTAGCTCTACTTGCCTACATTCA 57.067 39.130 0.00 0.00 0.00 2.57
292 293 4.399004 AGCTCTACTTGCCTACATTCAG 57.601 45.455 0.00 0.00 0.00 3.02
293 294 4.026744 AGCTCTACTTGCCTACATTCAGA 58.973 43.478 0.00 0.00 0.00 3.27
294 295 4.653341 AGCTCTACTTGCCTACATTCAGAT 59.347 41.667 0.00 0.00 0.00 2.90
295 296 4.987912 GCTCTACTTGCCTACATTCAGATC 59.012 45.833 0.00 0.00 0.00 2.75
296 297 5.452496 GCTCTACTTGCCTACATTCAGATCA 60.452 44.000 0.00 0.00 0.00 2.92
297 298 6.544928 TCTACTTGCCTACATTCAGATCAA 57.455 37.500 0.00 0.00 0.00 2.57
298 299 6.577103 TCTACTTGCCTACATTCAGATCAAG 58.423 40.000 0.00 0.00 34.72 3.02
299 300 4.521146 ACTTGCCTACATTCAGATCAAGG 58.479 43.478 0.00 0.00 33.78 3.61
300 301 4.018960 ACTTGCCTACATTCAGATCAAGGT 60.019 41.667 0.00 0.00 33.78 3.50
301 302 4.574674 TGCCTACATTCAGATCAAGGTT 57.425 40.909 0.00 0.00 0.00 3.50
302 303 4.922206 TGCCTACATTCAGATCAAGGTTT 58.078 39.130 0.00 0.00 0.00 3.27
303 304 6.061022 TGCCTACATTCAGATCAAGGTTTA 57.939 37.500 0.00 0.00 0.00 2.01
304 305 6.115446 TGCCTACATTCAGATCAAGGTTTAG 58.885 40.000 0.00 0.00 0.00 1.85
305 306 5.529060 GCCTACATTCAGATCAAGGTTTAGG 59.471 44.000 0.00 0.00 0.00 2.69
306 307 6.653989 CCTACATTCAGATCAAGGTTTAGGT 58.346 40.000 0.00 0.00 0.00 3.08
307 308 7.635089 GCCTACATTCAGATCAAGGTTTAGGTA 60.635 40.741 0.00 0.00 0.00 3.08
308 309 7.711339 CCTACATTCAGATCAAGGTTTAGGTAC 59.289 40.741 0.00 0.00 0.00 3.34
309 310 7.259088 ACATTCAGATCAAGGTTTAGGTACT 57.741 36.000 0.00 0.00 46.37 2.73
310 311 8.375493 ACATTCAGATCAAGGTTTAGGTACTA 57.625 34.615 0.00 0.00 41.75 1.82
326 327 5.425630 AGGTACTAATTTGGAACGATGTCC 58.574 41.667 0.00 0.00 36.02 4.02
327 328 5.189145 AGGTACTAATTTGGAACGATGTCCT 59.811 40.000 0.00 0.00 35.98 3.85
328 329 6.381994 AGGTACTAATTTGGAACGATGTCCTA 59.618 38.462 0.00 0.00 35.98 2.94
329 330 6.478016 GGTACTAATTTGGAACGATGTCCTAC 59.522 42.308 0.00 0.00 38.62 3.18
330 331 5.425630 ACTAATTTGGAACGATGTCCTACC 58.574 41.667 0.00 0.00 38.62 3.18
331 332 4.569719 AATTTGGAACGATGTCCTACCT 57.430 40.909 0.00 0.00 38.62 3.08
332 333 3.328382 TTTGGAACGATGTCCTACCTG 57.672 47.619 0.00 0.00 38.62 4.00
333 334 1.933021 TGGAACGATGTCCTACCTGT 58.067 50.000 0.00 0.00 38.62 4.00
334 335 3.090210 TGGAACGATGTCCTACCTGTA 57.910 47.619 0.00 0.00 38.62 2.74
335 336 3.433343 TGGAACGATGTCCTACCTGTAA 58.567 45.455 0.00 0.00 38.62 2.41
336 337 4.028131 TGGAACGATGTCCTACCTGTAAT 58.972 43.478 0.00 0.00 38.62 1.89
337 338 4.142026 TGGAACGATGTCCTACCTGTAATG 60.142 45.833 0.00 0.00 38.62 1.90
338 339 4.098960 GGAACGATGTCCTACCTGTAATGA 59.901 45.833 0.00 0.00 34.56 2.57
339 340 4.920640 ACGATGTCCTACCTGTAATGAG 57.079 45.455 0.00 0.00 0.00 2.90
340 341 3.068307 ACGATGTCCTACCTGTAATGAGC 59.932 47.826 0.00 0.00 0.00 4.26
341 342 3.319405 CGATGTCCTACCTGTAATGAGCT 59.681 47.826 0.00 0.00 0.00 4.09
342 343 4.519350 CGATGTCCTACCTGTAATGAGCTA 59.481 45.833 0.00 0.00 0.00 3.32
343 344 5.184096 CGATGTCCTACCTGTAATGAGCTAT 59.816 44.000 0.00 0.00 0.00 2.97
344 345 6.597832 ATGTCCTACCTGTAATGAGCTATC 57.402 41.667 0.00 0.00 0.00 2.08
345 346 5.454966 TGTCCTACCTGTAATGAGCTATCA 58.545 41.667 0.00 0.00 40.50 2.15
346 347 5.536538 TGTCCTACCTGTAATGAGCTATCAG 59.463 44.000 0.00 0.00 39.29 2.90
347 348 4.524714 TCCTACCTGTAATGAGCTATCAGC 59.475 45.833 0.00 0.00 42.84 4.26
348 349 4.281941 CCTACCTGTAATGAGCTATCAGCA 59.718 45.833 0.38 0.00 45.56 4.41
349 350 4.760530 ACCTGTAATGAGCTATCAGCAA 57.239 40.909 0.38 0.00 45.56 3.91
350 351 5.301835 ACCTGTAATGAGCTATCAGCAAT 57.698 39.130 0.38 0.00 45.56 3.56
351 352 5.061853 ACCTGTAATGAGCTATCAGCAATG 58.938 41.667 0.38 0.00 45.56 2.82
352 353 5.163269 ACCTGTAATGAGCTATCAGCAATGA 60.163 40.000 0.38 0.00 45.56 2.57
353 354 5.408909 CCTGTAATGAGCTATCAGCAATGAG 59.591 44.000 0.38 0.00 45.56 2.90
354 355 5.922053 TGTAATGAGCTATCAGCAATGAGT 58.078 37.500 0.38 0.00 45.56 3.41
355 356 5.756833 TGTAATGAGCTATCAGCAATGAGTG 59.243 40.000 0.38 0.00 45.56 3.51
369 370 2.969016 AGTGCTCAGCCACTCGAG 59.031 61.111 11.84 11.84 42.10 4.04
376 377 3.947173 AGCCACTCGAGCTGCTAT 58.053 55.556 23.34 5.32 39.69 2.97
377 378 2.206635 AGCCACTCGAGCTGCTATT 58.793 52.632 23.34 4.67 39.69 1.73
378 379 0.539051 AGCCACTCGAGCTGCTATTT 59.461 50.000 23.34 4.35 39.69 1.40
379 380 0.654683 GCCACTCGAGCTGCTATTTG 59.345 55.000 13.61 0.00 0.00 2.32
380 381 2.009042 GCCACTCGAGCTGCTATTTGT 61.009 52.381 13.61 0.00 0.00 2.83
381 382 2.738643 GCCACTCGAGCTGCTATTTGTA 60.739 50.000 13.61 0.00 0.00 2.41
382 383 3.521560 CCACTCGAGCTGCTATTTGTAA 58.478 45.455 13.61 0.00 0.00 2.41
383 384 3.932710 CCACTCGAGCTGCTATTTGTAAA 59.067 43.478 13.61 0.00 0.00 2.01
384 385 4.033358 CCACTCGAGCTGCTATTTGTAAAG 59.967 45.833 13.61 0.00 0.00 1.85
385 386 4.627467 CACTCGAGCTGCTATTTGTAAAGT 59.373 41.667 13.61 0.00 0.00 2.66
386 387 4.627467 ACTCGAGCTGCTATTTGTAAAGTG 59.373 41.667 13.61 0.00 0.00 3.16
387 388 4.566004 TCGAGCTGCTATTTGTAAAGTGT 58.434 39.130 0.15 0.00 0.00 3.55
388 389 4.388773 TCGAGCTGCTATTTGTAAAGTGTG 59.611 41.667 0.15 0.00 0.00 3.82
389 390 4.406943 GAGCTGCTATTTGTAAAGTGTGC 58.593 43.478 0.15 0.00 0.00 4.57
390 391 3.191371 AGCTGCTATTTGTAAAGTGTGCC 59.809 43.478 0.00 0.00 0.00 5.01
391 392 3.191371 GCTGCTATTTGTAAAGTGTGCCT 59.809 43.478 0.00 0.00 0.00 4.75
392 393 4.394920 GCTGCTATTTGTAAAGTGTGCCTA 59.605 41.667 0.00 0.00 0.00 3.93
393 394 5.106317 GCTGCTATTTGTAAAGTGTGCCTAA 60.106 40.000 0.00 0.00 0.00 2.69
394 395 6.404734 GCTGCTATTTGTAAAGTGTGCCTAAT 60.405 38.462 0.00 0.00 0.00 1.73
395 396 6.851609 TGCTATTTGTAAAGTGTGCCTAATG 58.148 36.000 0.00 0.00 0.00 1.90
396 397 5.743872 GCTATTTGTAAAGTGTGCCTAATGC 59.256 40.000 0.00 0.00 41.77 3.56
397 398 4.513198 TTTGTAAAGTGTGCCTAATGCC 57.487 40.909 0.00 0.00 40.16 4.40
398 399 3.147553 TGTAAAGTGTGCCTAATGCCA 57.852 42.857 0.00 0.00 40.16 4.92
399 400 3.696045 TGTAAAGTGTGCCTAATGCCAT 58.304 40.909 0.00 0.00 40.16 4.40
400 401 4.849518 TGTAAAGTGTGCCTAATGCCATA 58.150 39.130 0.00 0.00 40.16 2.74
401 402 5.445069 TGTAAAGTGTGCCTAATGCCATAT 58.555 37.500 0.00 0.00 40.16 1.78
402 403 5.890985 TGTAAAGTGTGCCTAATGCCATATT 59.109 36.000 0.00 0.00 40.16 1.28
403 404 7.057264 TGTAAAGTGTGCCTAATGCCATATTA 58.943 34.615 0.00 0.00 40.16 0.98
404 405 7.558081 TGTAAAGTGTGCCTAATGCCATATTAA 59.442 33.333 0.00 0.00 40.16 1.40
405 406 7.601705 AAAGTGTGCCTAATGCCATATTAAT 57.398 32.000 0.00 0.00 40.16 1.40
406 407 6.579666 AGTGTGCCTAATGCCATATTAATG 57.420 37.500 0.00 0.00 40.16 1.90
407 408 6.306199 AGTGTGCCTAATGCCATATTAATGA 58.694 36.000 0.00 0.00 40.16 2.57
408 409 6.777091 AGTGTGCCTAATGCCATATTAATGAA 59.223 34.615 0.00 0.00 40.16 2.57
409 410 7.287466 AGTGTGCCTAATGCCATATTAATGAAA 59.713 33.333 0.00 0.00 40.16 2.69
410 411 8.090214 GTGTGCCTAATGCCATATTAATGAAAT 58.910 33.333 0.00 0.00 40.16 2.17
411 412 8.306038 TGTGCCTAATGCCATATTAATGAAATC 58.694 33.333 0.00 0.00 40.16 2.17
412 413 7.761249 GTGCCTAATGCCATATTAATGAAATCC 59.239 37.037 0.00 0.00 40.16 3.01
413 414 7.675195 TGCCTAATGCCATATTAATGAAATCCT 59.325 33.333 0.00 0.00 40.16 3.24
414 415 8.534496 GCCTAATGCCATATTAATGAAATCCTT 58.466 33.333 0.00 0.00 34.84 3.36
418 419 8.716674 ATGCCATATTAATGAAATCCTTCTGT 57.283 30.769 0.00 0.00 34.84 3.41
419 420 8.537728 TGCCATATTAATGAAATCCTTCTGTT 57.462 30.769 0.00 0.00 34.84 3.16
420 421 8.632679 TGCCATATTAATGAAATCCTTCTGTTC 58.367 33.333 0.00 0.00 34.84 3.18
421 422 8.632679 GCCATATTAATGAAATCCTTCTGTTCA 58.367 33.333 0.00 0.00 34.84 3.18
485 486 1.271856 TCTTGCTCGGTATTCCCACA 58.728 50.000 0.00 0.00 0.00 4.17
501 502 2.926838 CCCACAGTTTTTCCGTTTTGTG 59.073 45.455 0.00 0.00 36.56 3.33
547 548 5.295292 AGACTGTCTCATTTCGGCATTTATG 59.705 40.000 4.06 0.00 0.00 1.90
595 596 0.733729 CCAAGCTGCAGAGATGCTTC 59.266 55.000 20.43 0.00 44.04 3.86
600 601 2.006056 GCTGCAGAGATGCTTCGAGTT 61.006 52.381 20.43 0.00 35.49 3.01
602 603 2.740981 CTGCAGAGATGCTTCGAGTTTT 59.259 45.455 8.42 0.00 35.49 2.43
665 667 2.806244 CCTGAAACCTGACCGTGTTTAG 59.194 50.000 0.00 0.00 34.97 1.85
685 687 4.530710 AGCAGTTTCATTCATGCACAAT 57.469 36.364 0.00 0.00 41.14 2.71
698 700 4.099266 TCATGCACAATAAATTGGTAGCCC 59.901 41.667 7.56 0.00 41.96 5.19
699 701 3.435275 TGCACAATAAATTGGTAGCCCA 58.565 40.909 7.56 0.00 41.96 5.36
700 702 4.029520 TGCACAATAAATTGGTAGCCCAT 58.970 39.130 7.56 0.00 41.49 4.00
701 703 4.141981 TGCACAATAAATTGGTAGCCCATG 60.142 41.667 7.56 0.00 41.49 3.66
702 704 4.099266 GCACAATAAATTGGTAGCCCATGA 59.901 41.667 7.56 0.00 41.49 3.07
703 705 5.591099 CACAATAAATTGGTAGCCCATGAC 58.409 41.667 7.56 0.00 41.49 3.06
704 706 4.338118 ACAATAAATTGGTAGCCCATGACG 59.662 41.667 7.56 0.00 41.49 4.35
709 746 0.981183 TGGTAGCCCATGACGAACTT 59.019 50.000 0.00 0.00 35.17 2.66
735 772 4.245660 ACGTGTACAATCTTGGTCATCAG 58.754 43.478 0.00 0.00 0.00 2.90
741 778 6.998074 TGTACAATCTTGGTCATCAGAAGTTT 59.002 34.615 0.00 0.00 0.00 2.66
750 787 7.496529 TGGTCATCAGAAGTTTAGAACAAAG 57.503 36.000 0.00 0.00 0.00 2.77
752 789 7.442364 TGGTCATCAGAAGTTTAGAACAAAGAG 59.558 37.037 0.00 0.00 0.00 2.85
760 797 9.408648 AGAAGTTTAGAACAAAGAGAAAATCCA 57.591 29.630 0.00 0.00 0.00 3.41
761 798 9.670719 GAAGTTTAGAACAAAGAGAAAATCCAG 57.329 33.333 0.00 0.00 0.00 3.86
762 799 7.652727 AGTTTAGAACAAAGAGAAAATCCAGC 58.347 34.615 0.00 0.00 0.00 4.85
764 801 7.581213 TTAGAACAAAGAGAAAATCCAGCAA 57.419 32.000 0.00 0.00 0.00 3.91
766 803 5.595952 AGAACAAAGAGAAAATCCAGCAACT 59.404 36.000 0.00 0.00 0.00 3.16
786 832 1.748879 CGCCGTCCATCAACCCAAT 60.749 57.895 0.00 0.00 0.00 3.16
800 846 1.303309 CCCAATCTGCTAAGCGAAGG 58.697 55.000 0.00 0.00 0.00 3.46
816 863 1.705745 GAAGGACTTCCCAACTCCCTT 59.294 52.381 0.55 0.00 36.78 3.95
827 874 3.474600 CCAACTCCCTTATCTGCATCTG 58.525 50.000 0.00 0.00 0.00 2.90
905 952 5.877012 GTGGTGGCCATAGTATATCATCTTG 59.123 44.000 9.72 0.00 35.28 3.02
929 976 5.163237 GGTACAAATAGCCCCAGTATCTCAA 60.163 44.000 0.00 0.00 0.00 3.02
931 978 5.440610 ACAAATAGCCCCAGTATCTCAAAG 58.559 41.667 0.00 0.00 0.00 2.77
932 979 5.191722 ACAAATAGCCCCAGTATCTCAAAGA 59.808 40.000 0.00 0.00 0.00 2.52
933 980 6.126361 ACAAATAGCCCCAGTATCTCAAAGAT 60.126 38.462 0.00 0.00 38.70 2.40
965 1012 7.019774 TCATCACAGAGCAAATAAACATAGC 57.980 36.000 0.00 0.00 0.00 2.97
988 1035 2.357396 TGCCTAGCGCACACACAG 60.357 61.111 11.47 0.00 44.64 3.66
992 1039 0.526211 CCTAGCGCACACACAGAGTA 59.474 55.000 11.47 0.00 0.00 2.59
1006 1053 3.935203 CACAGAGTAACTTACCATGGCTG 59.065 47.826 13.04 10.05 0.00 4.85
1008 1055 2.092914 AGAGTAACTTACCATGGCTGCC 60.093 50.000 13.04 12.87 0.00 4.85
1009 1056 1.633432 AGTAACTTACCATGGCTGCCA 59.367 47.619 25.65 25.65 38.19 4.92
1079 1126 2.279120 CTCTGCGGCATCTCGTCC 60.279 66.667 1.75 0.00 0.00 4.79
1128 1175 1.301244 CACACCAGCTCAGCGTTCT 60.301 57.895 0.00 0.00 0.00 3.01
1131 1178 0.038251 CACCAGCTCAGCGTTCTACA 60.038 55.000 0.00 0.00 0.00 2.74
1139 1186 1.080025 AGCGTTCTACACCGGAAGC 60.080 57.895 9.46 0.00 0.00 3.86
1150 1197 0.818040 ACCGGAAGCTCCAACAACAC 60.818 55.000 9.46 0.00 35.91 3.32
1151 1198 1.515521 CCGGAAGCTCCAACAACACC 61.516 60.000 0.00 0.00 35.91 4.16
1161 1208 0.039256 CAACAACACCGCCTCCAATG 60.039 55.000 0.00 0.00 0.00 2.82
1206 1253 0.322906 TGACAATGCCGCCAATACCA 60.323 50.000 0.00 0.00 0.00 3.25
1440 1487 0.464373 CATTCATGTCCCCACCTCCG 60.464 60.000 0.00 0.00 0.00 4.63
1563 1615 2.591923 TGGATGTTTTACTGGCTTGCA 58.408 42.857 0.00 0.00 0.00 4.08
1579 1631 3.059461 GCTTGCATTTGGTGTTGATTGTG 60.059 43.478 0.00 0.00 0.00 3.33
1582 1634 4.958509 TGCATTTGGTGTTGATTGTGAAT 58.041 34.783 0.00 0.00 0.00 2.57
1651 1703 7.148557 GCTTGGTTTGTTTAAGTTACTGCAAAA 60.149 33.333 0.00 0.00 0.00 2.44
1755 1968 8.964476 ACTCTTATCTTGTTTGACAGAAAAGA 57.036 30.769 1.29 1.29 0.00 2.52
1756 1969 9.396022 ACTCTTATCTTGTTTGACAGAAAAGAA 57.604 29.630 2.89 0.00 31.14 2.52
1760 1973 9.950680 TTATCTTGTTTGACAGAAAAGAATGAC 57.049 29.630 2.89 0.00 31.14 3.06
1761 1974 6.486248 TCTTGTTTGACAGAAAAGAATGACG 58.514 36.000 0.00 0.00 0.00 4.35
1762 1975 6.315144 TCTTGTTTGACAGAAAAGAATGACGA 59.685 34.615 0.00 0.00 0.00 4.20
1763 1976 5.806286 TGTTTGACAGAAAAGAATGACGAC 58.194 37.500 0.00 0.00 0.00 4.34
1764 1977 4.708868 TTGACAGAAAAGAATGACGACG 57.291 40.909 0.00 0.00 0.00 5.12
1765 1978 3.713288 TGACAGAAAAGAATGACGACGT 58.287 40.909 0.00 0.00 0.00 4.34
1826 2039 3.181465 ACCAACTATTCCTACCATGCTCG 60.181 47.826 0.00 0.00 0.00 5.03
1874 2087 8.593492 AGATAGCATTTTCCTTTCAACAAAAC 57.407 30.769 0.00 0.00 0.00 2.43
1886 2099 7.539366 TCCTTTCAACAAAACTAAACAAAGACG 59.461 33.333 0.00 0.00 0.00 4.18
1913 2126 7.118971 GCATGGCATTAAGAAAATAAACACCAA 59.881 33.333 0.00 0.00 0.00 3.67
2008 2222 3.066203 GTGTTTCTGAACAAATCCGTGGT 59.934 43.478 0.00 0.00 46.62 4.16
2020 2234 2.715749 TCCGTGGTTATCTCGGACTA 57.284 50.000 4.45 0.00 46.54 2.59
2046 2260 8.822805 AGTAGGAGAAATAATAAACACCAGACA 58.177 33.333 0.00 0.00 0.00 3.41
2047 2261 9.614792 GTAGGAGAAATAATAAACACCAGACAT 57.385 33.333 0.00 0.00 0.00 3.06
2048 2262 8.511604 AGGAGAAATAATAAACACCAGACATG 57.488 34.615 0.00 0.00 0.00 3.21
2049 2263 7.067494 AGGAGAAATAATAAACACCAGACATGC 59.933 37.037 0.00 0.00 0.00 4.06
2050 2264 7.148086 GGAGAAATAATAAACACCAGACATGCA 60.148 37.037 0.00 0.00 0.00 3.96
2051 2265 8.121305 AGAAATAATAAACACCAGACATGCAA 57.879 30.769 0.00 0.00 0.00 4.08
2052 2266 8.028938 AGAAATAATAAACACCAGACATGCAAC 58.971 33.333 0.00 0.00 0.00 4.17
2106 2320 7.645058 ACAATGAGAACAGAAAAAGGAAAGA 57.355 32.000 0.00 0.00 0.00 2.52
2168 2382 6.653526 ATCCATCAAACTGACACATTGAAA 57.346 33.333 3.08 0.00 36.72 2.69
2173 2387 5.718146 TCAAACTGACACATTGAAAGCAAA 58.282 33.333 0.00 0.00 37.59 3.68
2178 2392 7.275888 ACTGACACATTGAAAGCAAAAGATA 57.724 32.000 0.00 0.00 37.59 1.98
2195 2409 8.655970 GCAAAAGATACCAATTTGATGTTAACC 58.344 33.333 2.48 0.00 36.41 2.85
2265 2485 6.959361 ACAGCACTAACACAGAATAACAAAG 58.041 36.000 0.00 0.00 0.00 2.77
2403 2629 3.161866 GGGTTTATCAAAGGCACTCCAA 58.838 45.455 0.00 0.00 38.49 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.074970 CCAACAGCAGTCCATAAACTTCT 58.925 43.478 0.00 0.00 0.00 2.85
1 2 3.366374 GCCAACAGCAGTCCATAAACTTC 60.366 47.826 0.00 0.00 42.97 3.01
2 3 2.558359 GCCAACAGCAGTCCATAAACTT 59.442 45.455 0.00 0.00 42.97 2.66
3 4 2.162681 GCCAACAGCAGTCCATAAACT 58.837 47.619 0.00 0.00 42.97 2.66
4 5 1.135689 CGCCAACAGCAGTCCATAAAC 60.136 52.381 0.00 0.00 44.04 2.01
7 8 1.078497 CCGCCAACAGCAGTCCATA 60.078 57.895 0.00 0.00 44.04 2.74
9 10 3.872603 ACCGCCAACAGCAGTCCA 61.873 61.111 0.00 0.00 44.04 4.02
11 12 1.845809 CTTCACCGCCAACAGCAGTC 61.846 60.000 0.00 0.00 44.04 3.51
12 13 1.893808 CTTCACCGCCAACAGCAGT 60.894 57.895 0.00 0.00 44.04 4.40
13 14 0.957395 ATCTTCACCGCCAACAGCAG 60.957 55.000 0.00 0.00 44.04 4.24
14 15 0.537143 AATCTTCACCGCCAACAGCA 60.537 50.000 0.00 0.00 44.04 4.41
15 16 0.109597 CAATCTTCACCGCCAACAGC 60.110 55.000 0.00 0.00 38.52 4.40
16 17 0.109597 GCAATCTTCACCGCCAACAG 60.110 55.000 0.00 0.00 0.00 3.16
17 18 0.821301 TGCAATCTTCACCGCCAACA 60.821 50.000 0.00 0.00 0.00 3.33
18 19 0.109597 CTGCAATCTTCACCGCCAAC 60.110 55.000 0.00 0.00 0.00 3.77
19 20 1.865788 GCTGCAATCTTCACCGCCAA 61.866 55.000 0.00 0.00 0.00 4.52
20 21 2.334946 GCTGCAATCTTCACCGCCA 61.335 57.895 0.00 0.00 0.00 5.69
21 22 1.986575 GAGCTGCAATCTTCACCGCC 61.987 60.000 1.02 0.00 0.00 6.13
22 23 1.300971 TGAGCTGCAATCTTCACCGC 61.301 55.000 1.02 0.00 0.00 5.68
23 24 1.135859 GTTGAGCTGCAATCTTCACCG 60.136 52.381 1.02 0.00 39.03 4.94
24 25 2.157738 AGTTGAGCTGCAATCTTCACC 58.842 47.619 1.02 0.00 39.03 4.02
25 26 3.748048 TGTAGTTGAGCTGCAATCTTCAC 59.252 43.478 1.02 0.00 39.03 3.18
26 27 4.006780 TGTAGTTGAGCTGCAATCTTCA 57.993 40.909 1.02 0.00 39.03 3.02
27 28 4.394300 ACATGTAGTTGAGCTGCAATCTTC 59.606 41.667 0.00 0.00 42.87 2.87
28 29 4.155462 CACATGTAGTTGAGCTGCAATCTT 59.845 41.667 0.00 0.00 42.87 2.40
29 30 3.688185 CACATGTAGTTGAGCTGCAATCT 59.312 43.478 0.00 0.00 42.87 2.40
30 31 3.730061 GCACATGTAGTTGAGCTGCAATC 60.730 47.826 0.00 0.00 42.87 2.67
31 32 2.163010 GCACATGTAGTTGAGCTGCAAT 59.837 45.455 0.00 0.00 42.87 3.56
32 33 1.536766 GCACATGTAGTTGAGCTGCAA 59.463 47.619 0.00 0.00 42.87 4.08
33 34 1.159285 GCACATGTAGTTGAGCTGCA 58.841 50.000 0.00 0.00 43.72 4.41
34 35 1.129998 CTGCACATGTAGTTGAGCTGC 59.870 52.381 0.00 0.00 34.74 5.25
35 36 1.736126 CCTGCACATGTAGTTGAGCTG 59.264 52.381 0.00 0.61 34.74 4.24
36 37 1.625315 TCCTGCACATGTAGTTGAGCT 59.375 47.619 0.00 0.00 34.74 4.09
37 38 2.099141 TCCTGCACATGTAGTTGAGC 57.901 50.000 0.00 0.00 34.31 4.26
38 39 3.201290 GGATCCTGCACATGTAGTTGAG 58.799 50.000 3.84 0.00 0.00 3.02
39 40 2.418609 CGGATCCTGCACATGTAGTTGA 60.419 50.000 10.75 0.00 0.00 3.18
40 41 1.935873 CGGATCCTGCACATGTAGTTG 59.064 52.381 10.75 0.00 0.00 3.16
41 42 1.831106 TCGGATCCTGCACATGTAGTT 59.169 47.619 10.75 0.00 0.00 2.24
42 43 1.485124 TCGGATCCTGCACATGTAGT 58.515 50.000 10.75 0.00 0.00 2.73
43 44 2.159043 ACTTCGGATCCTGCACATGTAG 60.159 50.000 10.75 0.00 0.00 2.74
44 45 1.831106 ACTTCGGATCCTGCACATGTA 59.169 47.619 10.75 0.00 0.00 2.29
45 46 0.615331 ACTTCGGATCCTGCACATGT 59.385 50.000 10.75 0.00 0.00 3.21
46 47 1.742761 AACTTCGGATCCTGCACATG 58.257 50.000 10.75 0.00 0.00 3.21
47 48 2.496899 AAACTTCGGATCCTGCACAT 57.503 45.000 10.75 0.00 0.00 3.21
48 49 2.270352 AAAACTTCGGATCCTGCACA 57.730 45.000 10.75 0.00 0.00 4.57
49 50 2.552315 TCAAAAACTTCGGATCCTGCAC 59.448 45.455 10.75 0.00 0.00 4.57
50 51 2.552315 GTCAAAAACTTCGGATCCTGCA 59.448 45.455 10.75 0.00 0.00 4.41
51 52 2.552315 TGTCAAAAACTTCGGATCCTGC 59.448 45.455 10.75 0.00 0.00 4.85
52 53 4.065088 TCTGTCAAAAACTTCGGATCCTG 58.935 43.478 10.75 3.62 0.00 3.86
53 54 4.065789 GTCTGTCAAAAACTTCGGATCCT 58.934 43.478 10.75 0.00 0.00 3.24
54 55 4.065789 AGTCTGTCAAAAACTTCGGATCC 58.934 43.478 0.00 0.00 0.00 3.36
55 56 4.991687 AGAGTCTGTCAAAAACTTCGGATC 59.008 41.667 0.00 0.00 0.00 3.36
56 57 4.962155 AGAGTCTGTCAAAAACTTCGGAT 58.038 39.130 0.00 0.00 0.00 4.18
57 58 4.402056 AGAGTCTGTCAAAAACTTCGGA 57.598 40.909 0.00 0.00 0.00 4.55
58 59 6.258068 ACTTAAGAGTCTGTCAAAAACTTCGG 59.742 38.462 10.09 0.00 0.00 4.30
59 60 7.119997 CACTTAAGAGTCTGTCAAAAACTTCG 58.880 38.462 10.09 0.00 32.54 3.79
60 61 6.907748 GCACTTAAGAGTCTGTCAAAAACTTC 59.092 38.462 10.09 0.00 32.54 3.01
61 62 6.599638 AGCACTTAAGAGTCTGTCAAAAACTT 59.400 34.615 10.09 0.00 32.54 2.66
62 63 6.116126 AGCACTTAAGAGTCTGTCAAAAACT 58.884 36.000 10.09 0.00 32.54 2.66
63 64 6.364945 AGCACTTAAGAGTCTGTCAAAAAC 57.635 37.500 10.09 0.00 32.54 2.43
64 65 6.677920 GCAAGCACTTAAGAGTCTGTCAAAAA 60.678 38.462 10.09 0.00 32.54 1.94
65 66 5.220854 GCAAGCACTTAAGAGTCTGTCAAAA 60.221 40.000 10.09 0.00 32.54 2.44
66 67 4.273480 GCAAGCACTTAAGAGTCTGTCAAA 59.727 41.667 10.09 0.00 32.54 2.69
67 68 3.809832 GCAAGCACTTAAGAGTCTGTCAA 59.190 43.478 10.09 0.00 32.54 3.18
68 69 3.393800 GCAAGCACTTAAGAGTCTGTCA 58.606 45.455 10.09 0.00 32.54 3.58
69 70 2.739379 GGCAAGCACTTAAGAGTCTGTC 59.261 50.000 10.09 1.10 32.54 3.51
70 71 2.370189 AGGCAAGCACTTAAGAGTCTGT 59.630 45.455 10.09 0.00 32.54 3.41
71 72 2.999355 GAGGCAAGCACTTAAGAGTCTG 59.001 50.000 10.09 4.45 32.54 3.51
72 73 2.634940 TGAGGCAAGCACTTAAGAGTCT 59.365 45.455 10.09 0.39 32.54 3.24
73 74 2.999355 CTGAGGCAAGCACTTAAGAGTC 59.001 50.000 10.09 0.00 32.54 3.36
74 75 2.873649 GCTGAGGCAAGCACTTAAGAGT 60.874 50.000 10.09 0.00 43.01 3.24
75 76 1.736681 GCTGAGGCAAGCACTTAAGAG 59.263 52.381 10.09 1.84 43.01 2.85
76 77 1.813513 GCTGAGGCAAGCACTTAAGA 58.186 50.000 10.09 0.00 43.01 2.10
77 78 0.445436 CGCTGAGGCAAGCACTTAAG 59.555 55.000 11.98 0.00 43.73 1.85
78 79 0.955428 CCGCTGAGGCAAGCACTTAA 60.955 55.000 11.98 0.00 43.73 1.85
79 80 1.375908 CCGCTGAGGCAAGCACTTA 60.376 57.895 11.98 0.00 43.73 2.24
80 81 2.670934 CCGCTGAGGCAAGCACTT 60.671 61.111 11.98 0.00 43.73 3.16
81 82 3.482232 AACCGCTGAGGCAAGCACT 62.482 57.895 11.98 0.00 46.52 4.40
82 83 2.980233 AACCGCTGAGGCAAGCAC 60.980 61.111 11.98 0.00 46.52 4.40
83 84 2.390306 TACAACCGCTGAGGCAAGCA 62.390 55.000 11.98 0.00 46.52 3.91
84 85 1.671054 TACAACCGCTGAGGCAAGC 60.671 57.895 0.00 2.35 46.52 4.01
85 86 0.602638 TGTACAACCGCTGAGGCAAG 60.603 55.000 0.00 0.00 46.52 4.01
86 87 0.179043 TTGTACAACCGCTGAGGCAA 60.179 50.000 3.59 0.00 46.52 4.52
87 88 0.882927 GTTGTACAACCGCTGAGGCA 60.883 55.000 25.31 0.00 46.52 4.75
88 89 1.866925 GTTGTACAACCGCTGAGGC 59.133 57.895 25.31 0.00 46.52 4.70
97 98 9.158233 TGCTTTAGTAATATCAGGTTGTACAAC 57.842 33.333 27.20 27.20 40.45 3.32
98 99 9.378551 CTGCTTTAGTAATATCAGGTTGTACAA 57.621 33.333 3.59 3.59 0.00 2.41
99 100 7.985184 CCTGCTTTAGTAATATCAGGTTGTACA 59.015 37.037 13.37 0.00 37.05 2.90
100 101 8.366671 CCTGCTTTAGTAATATCAGGTTGTAC 57.633 38.462 13.37 0.00 37.05 2.90
106 107 6.201044 CACGAACCTGCTTTAGTAATATCAGG 59.799 42.308 17.28 17.28 44.80 3.86
107 108 6.201044 CCACGAACCTGCTTTAGTAATATCAG 59.799 42.308 0.00 0.00 0.00 2.90
108 109 6.046593 CCACGAACCTGCTTTAGTAATATCA 58.953 40.000 0.00 0.00 0.00 2.15
109 110 5.465724 CCCACGAACCTGCTTTAGTAATATC 59.534 44.000 0.00 0.00 0.00 1.63
110 111 5.365619 CCCACGAACCTGCTTTAGTAATAT 58.634 41.667 0.00 0.00 0.00 1.28
111 112 4.761975 CCCACGAACCTGCTTTAGTAATA 58.238 43.478 0.00 0.00 0.00 0.98
112 113 3.606687 CCCACGAACCTGCTTTAGTAAT 58.393 45.455 0.00 0.00 0.00 1.89
113 114 2.872842 GCCCACGAACCTGCTTTAGTAA 60.873 50.000 0.00 0.00 0.00 2.24
114 115 1.338389 GCCCACGAACCTGCTTTAGTA 60.338 52.381 0.00 0.00 0.00 1.82
115 116 0.605589 GCCCACGAACCTGCTTTAGT 60.606 55.000 0.00 0.00 0.00 2.24
116 117 0.321653 AGCCCACGAACCTGCTTTAG 60.322 55.000 0.00 0.00 0.00 1.85
117 118 0.978151 TAGCCCACGAACCTGCTTTA 59.022 50.000 0.00 0.00 35.34 1.85
118 119 0.328258 ATAGCCCACGAACCTGCTTT 59.672 50.000 0.00 0.00 35.34 3.51
119 120 0.107654 GATAGCCCACGAACCTGCTT 60.108 55.000 0.00 0.00 35.34 3.91
120 121 1.522569 GATAGCCCACGAACCTGCT 59.477 57.895 0.00 0.00 37.84 4.24
121 122 1.523938 GGATAGCCCACGAACCTGC 60.524 63.158 0.00 0.00 34.14 4.85
122 123 1.227263 CGGATAGCCCACGAACCTG 60.227 63.158 0.00 0.00 34.14 4.00
123 124 2.432300 CCGGATAGCCCACGAACCT 61.432 63.158 0.00 0.00 34.14 3.50
124 125 2.108362 CCGGATAGCCCACGAACC 59.892 66.667 0.00 0.00 34.14 3.62
125 126 2.588034 GCCGGATAGCCCACGAAC 60.588 66.667 5.05 0.00 34.14 3.95
133 134 1.002544 AGCTAAGATTGGCCGGATAGC 59.997 52.381 5.05 14.45 34.95 2.97
134 135 2.693069 CAGCTAAGATTGGCCGGATAG 58.307 52.381 5.05 0.00 34.95 2.08
135 136 1.270839 GCAGCTAAGATTGGCCGGATA 60.271 52.381 5.05 0.00 34.95 2.59
136 137 0.536006 GCAGCTAAGATTGGCCGGAT 60.536 55.000 5.05 0.00 34.95 4.18
137 138 1.153168 GCAGCTAAGATTGGCCGGA 60.153 57.895 5.05 0.00 34.95 5.14
138 139 0.106708 TAGCAGCTAAGATTGGCCGG 59.893 55.000 0.00 0.00 34.95 6.13
139 140 2.072298 GATAGCAGCTAAGATTGGCCG 58.928 52.381 6.13 0.00 34.95 6.13
140 141 2.224621 TGGATAGCAGCTAAGATTGGCC 60.225 50.000 6.13 0.00 34.95 5.36
141 142 3.072944 CTGGATAGCAGCTAAGATTGGC 58.927 50.000 6.13 0.00 34.56 4.52
142 143 4.314121 GTCTGGATAGCAGCTAAGATTGG 58.686 47.826 6.13 0.00 0.00 3.16
143 144 4.202295 TGGTCTGGATAGCAGCTAAGATTG 60.202 45.833 6.13 0.00 0.00 2.67
144 145 3.969976 TGGTCTGGATAGCAGCTAAGATT 59.030 43.478 6.13 0.00 0.00 2.40
145 146 3.323403 GTGGTCTGGATAGCAGCTAAGAT 59.677 47.826 6.13 0.00 0.00 2.40
146 147 2.695666 GTGGTCTGGATAGCAGCTAAGA 59.304 50.000 6.13 2.00 0.00 2.10
147 148 2.544694 CGTGGTCTGGATAGCAGCTAAG 60.545 54.545 6.13 0.00 0.00 2.18
148 149 1.409064 CGTGGTCTGGATAGCAGCTAA 59.591 52.381 6.13 0.00 0.00 3.09
149 150 1.032794 CGTGGTCTGGATAGCAGCTA 58.967 55.000 4.10 4.10 0.00 3.32
150 151 1.819229 CGTGGTCTGGATAGCAGCT 59.181 57.895 0.00 0.00 0.00 4.24
151 152 1.884926 GCGTGGTCTGGATAGCAGC 60.885 63.158 0.00 0.00 0.00 5.25
152 153 1.227380 GGCGTGGTCTGGATAGCAG 60.227 63.158 0.00 0.00 0.00 4.24
153 154 1.264749 AAGGCGTGGTCTGGATAGCA 61.265 55.000 0.00 0.00 0.00 3.49
154 155 0.530870 GAAGGCGTGGTCTGGATAGC 60.531 60.000 0.00 0.00 0.00 2.97
155 156 0.824109 TGAAGGCGTGGTCTGGATAG 59.176 55.000 0.00 0.00 0.00 2.08
156 157 1.496060 ATGAAGGCGTGGTCTGGATA 58.504 50.000 0.00 0.00 0.00 2.59
157 158 0.620556 AATGAAGGCGTGGTCTGGAT 59.379 50.000 0.00 0.00 0.00 3.41
158 159 0.400213 AAATGAAGGCGTGGTCTGGA 59.600 50.000 0.00 0.00 0.00 3.86
159 160 0.804989 GAAATGAAGGCGTGGTCTGG 59.195 55.000 0.00 0.00 0.00 3.86
160 161 1.522668 TGAAATGAAGGCGTGGTCTG 58.477 50.000 0.00 0.00 0.00 3.51
161 162 2.359900 GATGAAATGAAGGCGTGGTCT 58.640 47.619 0.00 0.00 0.00 3.85
162 163 1.401905 GGATGAAATGAAGGCGTGGTC 59.598 52.381 0.00 0.00 0.00 4.02
163 164 1.271871 TGGATGAAATGAAGGCGTGGT 60.272 47.619 0.00 0.00 0.00 4.16
164 165 1.462616 TGGATGAAATGAAGGCGTGG 58.537 50.000 0.00 0.00 0.00 4.94
165 166 5.934043 TCTATATGGATGAAATGAAGGCGTG 59.066 40.000 0.00 0.00 0.00 5.34
166 167 6.114187 TCTATATGGATGAAATGAAGGCGT 57.886 37.500 0.00 0.00 0.00 5.68
167 168 7.621428 ATTCTATATGGATGAAATGAAGGCG 57.379 36.000 0.00 0.00 0.00 5.52
168 169 9.678260 AGTATTCTATATGGATGAAATGAAGGC 57.322 33.333 0.00 0.00 0.00 4.35
176 177 9.494271 GCACTTTGAGTATTCTATATGGATGAA 57.506 33.333 0.00 0.00 0.00 2.57
177 178 8.650490 TGCACTTTGAGTATTCTATATGGATGA 58.350 33.333 0.00 0.00 0.00 2.92
178 179 8.715998 GTGCACTTTGAGTATTCTATATGGATG 58.284 37.037 10.32 0.00 0.00 3.51
179 180 8.432013 TGTGCACTTTGAGTATTCTATATGGAT 58.568 33.333 19.41 0.00 0.00 3.41
180 181 7.791029 TGTGCACTTTGAGTATTCTATATGGA 58.209 34.615 19.41 0.00 0.00 3.41
181 182 7.928167 TCTGTGCACTTTGAGTATTCTATATGG 59.072 37.037 19.41 0.00 0.00 2.74
182 183 8.877808 TCTGTGCACTTTGAGTATTCTATATG 57.122 34.615 19.41 0.00 0.00 1.78
183 184 9.539825 CTTCTGTGCACTTTGAGTATTCTATAT 57.460 33.333 19.41 0.00 0.00 0.86
184 185 8.531982 ACTTCTGTGCACTTTGAGTATTCTATA 58.468 33.333 19.41 0.00 0.00 1.31
185 186 7.390027 ACTTCTGTGCACTTTGAGTATTCTAT 58.610 34.615 19.41 0.00 0.00 1.98
186 187 6.759272 ACTTCTGTGCACTTTGAGTATTCTA 58.241 36.000 19.41 0.00 0.00 2.10
187 188 5.615289 ACTTCTGTGCACTTTGAGTATTCT 58.385 37.500 19.41 0.00 0.00 2.40
188 189 5.698545 AGACTTCTGTGCACTTTGAGTATTC 59.301 40.000 19.41 4.81 0.00 1.75
189 190 5.468072 CAGACTTCTGTGCACTTTGAGTATT 59.532 40.000 19.41 6.24 39.09 1.89
190 191 4.993584 CAGACTTCTGTGCACTTTGAGTAT 59.006 41.667 19.41 10.83 39.09 2.12
191 192 4.099419 TCAGACTTCTGTGCACTTTGAGTA 59.901 41.667 19.41 0.00 44.12 2.59
192 193 3.118629 TCAGACTTCTGTGCACTTTGAGT 60.119 43.478 19.41 15.58 44.12 3.41
193 194 3.461061 TCAGACTTCTGTGCACTTTGAG 58.539 45.455 19.41 12.60 44.12 3.02
194 195 3.541996 TCAGACTTCTGTGCACTTTGA 57.458 42.857 19.41 10.75 44.12 2.69
195 196 4.825546 ATTCAGACTTCTGTGCACTTTG 57.174 40.909 19.41 8.48 44.12 2.77
196 197 5.357878 TGAAATTCAGACTTCTGTGCACTTT 59.642 36.000 19.41 5.20 44.12 2.66
197 198 4.883585 TGAAATTCAGACTTCTGTGCACTT 59.116 37.500 19.41 0.00 44.12 3.16
198 199 4.454678 TGAAATTCAGACTTCTGTGCACT 58.545 39.130 19.41 0.00 44.12 4.40
199 200 4.818534 TGAAATTCAGACTTCTGTGCAC 57.181 40.909 10.75 10.75 44.12 4.57
200 201 4.276678 CCTTGAAATTCAGACTTCTGTGCA 59.723 41.667 6.15 0.00 44.12 4.57
201 202 4.791974 CCTTGAAATTCAGACTTCTGTGC 58.208 43.478 6.15 0.00 44.12 4.57
202 203 4.276678 TGCCTTGAAATTCAGACTTCTGTG 59.723 41.667 6.15 0.00 44.12 3.66
203 204 4.276926 GTGCCTTGAAATTCAGACTTCTGT 59.723 41.667 6.15 0.00 44.12 3.41
204 205 4.276678 TGTGCCTTGAAATTCAGACTTCTG 59.723 41.667 0.00 0.00 45.08 3.02
205 206 4.276926 GTGTGCCTTGAAATTCAGACTTCT 59.723 41.667 0.00 0.00 0.00 2.85
206 207 4.540824 GTGTGCCTTGAAATTCAGACTTC 58.459 43.478 0.00 0.00 0.00 3.01
207 208 3.319122 GGTGTGCCTTGAAATTCAGACTT 59.681 43.478 0.00 0.00 0.00 3.01
208 209 2.887152 GGTGTGCCTTGAAATTCAGACT 59.113 45.455 0.00 0.00 0.00 3.24
209 210 2.622942 TGGTGTGCCTTGAAATTCAGAC 59.377 45.455 0.00 0.00 35.27 3.51
210 211 2.942804 TGGTGTGCCTTGAAATTCAGA 58.057 42.857 0.00 0.00 35.27 3.27
211 212 3.256383 TGATGGTGTGCCTTGAAATTCAG 59.744 43.478 0.00 0.00 35.27 3.02
212 213 3.229293 TGATGGTGTGCCTTGAAATTCA 58.771 40.909 0.00 0.00 35.27 2.57
213 214 3.367703 CCTGATGGTGTGCCTTGAAATTC 60.368 47.826 0.00 0.00 35.27 2.17
214 215 2.564062 CCTGATGGTGTGCCTTGAAATT 59.436 45.455 0.00 0.00 35.27 1.82
215 216 2.173519 CCTGATGGTGTGCCTTGAAAT 58.826 47.619 0.00 0.00 35.27 2.17
216 217 1.619654 CCTGATGGTGTGCCTTGAAA 58.380 50.000 0.00 0.00 35.27 2.69
217 218 0.895100 GCCTGATGGTGTGCCTTGAA 60.895 55.000 0.00 0.00 35.27 2.69
218 219 1.303561 GCCTGATGGTGTGCCTTGA 60.304 57.895 0.00 0.00 35.27 3.02
219 220 0.035152 TAGCCTGATGGTGTGCCTTG 60.035 55.000 0.00 0.00 35.27 3.61
220 221 0.254178 CTAGCCTGATGGTGTGCCTT 59.746 55.000 0.00 0.00 35.27 4.35
221 222 0.618680 TCTAGCCTGATGGTGTGCCT 60.619 55.000 0.00 0.00 35.27 4.75
222 223 0.462759 GTCTAGCCTGATGGTGTGCC 60.463 60.000 0.00 0.00 35.27 5.01
223 224 0.539051 AGTCTAGCCTGATGGTGTGC 59.461 55.000 0.00 0.00 35.27 4.57
224 225 2.625737 CAAGTCTAGCCTGATGGTGTG 58.374 52.381 0.00 0.00 35.27 3.82
225 226 1.065854 GCAAGTCTAGCCTGATGGTGT 60.066 52.381 0.00 0.00 35.27 4.16
226 227 1.209019 AGCAAGTCTAGCCTGATGGTG 59.791 52.381 0.00 0.00 35.27 4.17
227 228 1.209019 CAGCAAGTCTAGCCTGATGGT 59.791 52.381 0.00 0.00 35.27 3.55
228 229 1.209019 ACAGCAAGTCTAGCCTGATGG 59.791 52.381 8.14 0.00 0.00 3.51
229 230 2.687700 ACAGCAAGTCTAGCCTGATG 57.312 50.000 0.00 3.25 0.00 3.07
230 231 4.826274 TTAACAGCAAGTCTAGCCTGAT 57.174 40.909 0.00 0.00 0.00 2.90
231 232 4.040461 ACTTTAACAGCAAGTCTAGCCTGA 59.960 41.667 0.00 0.00 27.49 3.86
232 233 4.153117 CACTTTAACAGCAAGTCTAGCCTG 59.847 45.833 0.00 0.00 31.83 4.85
233 234 4.319177 CACTTTAACAGCAAGTCTAGCCT 58.681 43.478 0.00 0.00 31.83 4.58
234 235 3.120165 GCACTTTAACAGCAAGTCTAGCC 60.120 47.826 0.00 0.00 31.83 3.93
235 236 3.498397 TGCACTTTAACAGCAAGTCTAGC 59.502 43.478 0.00 0.00 34.97 3.42
236 237 5.673337 TTGCACTTTAACAGCAAGTCTAG 57.327 39.130 4.74 0.00 42.71 2.43
242 243 6.040391 AGGTTTATCTTGCACTTTAACAGCAA 59.960 34.615 7.81 7.81 45.07 3.91
243 244 5.534654 AGGTTTATCTTGCACTTTAACAGCA 59.465 36.000 0.00 0.00 36.32 4.41
244 245 6.013842 AGGTTTATCTTGCACTTTAACAGC 57.986 37.500 0.00 0.00 0.00 4.40
245 246 8.871686 AAAAGGTTTATCTTGCACTTTAACAG 57.128 30.769 0.00 0.00 0.00 3.16
246 247 9.959749 CTAAAAGGTTTATCTTGCACTTTAACA 57.040 29.630 0.00 0.00 0.00 2.41
247 248 8.912658 GCTAAAAGGTTTATCTTGCACTTTAAC 58.087 33.333 0.00 0.00 0.00 2.01
248 249 8.856103 AGCTAAAAGGTTTATCTTGCACTTTAA 58.144 29.630 0.00 0.00 0.00 1.52
249 250 8.404107 AGCTAAAAGGTTTATCTTGCACTTTA 57.596 30.769 0.00 0.00 0.00 1.85
250 251 7.231519 AGAGCTAAAAGGTTTATCTTGCACTTT 59.768 33.333 0.00 0.00 0.00 2.66
251 252 6.717084 AGAGCTAAAAGGTTTATCTTGCACTT 59.283 34.615 0.00 0.00 0.00 3.16
252 253 6.241645 AGAGCTAAAAGGTTTATCTTGCACT 58.758 36.000 0.00 0.00 0.00 4.40
253 254 6.502136 AGAGCTAAAAGGTTTATCTTGCAC 57.498 37.500 0.00 0.00 0.00 4.57
254 255 7.394816 AGTAGAGCTAAAAGGTTTATCTTGCA 58.605 34.615 0.00 0.00 0.00 4.08
255 256 7.851387 AGTAGAGCTAAAAGGTTTATCTTGC 57.149 36.000 0.00 0.00 0.00 4.01
256 257 8.178313 GCAAGTAGAGCTAAAAGGTTTATCTTG 58.822 37.037 0.00 0.00 32.10 3.02
257 258 7.337184 GGCAAGTAGAGCTAAAAGGTTTATCTT 59.663 37.037 0.00 0.00 0.00 2.40
258 259 6.824196 GGCAAGTAGAGCTAAAAGGTTTATCT 59.176 38.462 0.00 0.00 0.00 1.98
259 260 6.824196 AGGCAAGTAGAGCTAAAAGGTTTATC 59.176 38.462 0.00 0.00 0.00 1.75
260 261 6.722328 AGGCAAGTAGAGCTAAAAGGTTTAT 58.278 36.000 0.00 0.00 0.00 1.40
261 262 6.123045 AGGCAAGTAGAGCTAAAAGGTTTA 57.877 37.500 0.00 0.00 0.00 2.01
262 263 4.986783 AGGCAAGTAGAGCTAAAAGGTTT 58.013 39.130 0.00 0.00 0.00 3.27
263 264 4.642466 AGGCAAGTAGAGCTAAAAGGTT 57.358 40.909 0.00 0.00 0.00 3.50
264 265 4.530946 TGTAGGCAAGTAGAGCTAAAAGGT 59.469 41.667 0.00 0.00 0.00 3.50
265 266 5.086104 TGTAGGCAAGTAGAGCTAAAAGG 57.914 43.478 0.00 0.00 0.00 3.11
266 267 6.818644 TGAATGTAGGCAAGTAGAGCTAAAAG 59.181 38.462 0.00 0.00 0.00 2.27
267 268 6.707290 TGAATGTAGGCAAGTAGAGCTAAAA 58.293 36.000 0.00 0.00 0.00 1.52
268 269 6.154534 TCTGAATGTAGGCAAGTAGAGCTAAA 59.845 38.462 0.00 0.00 0.00 1.85
269 270 5.656859 TCTGAATGTAGGCAAGTAGAGCTAA 59.343 40.000 0.00 0.00 0.00 3.09
270 271 5.201243 TCTGAATGTAGGCAAGTAGAGCTA 58.799 41.667 0.00 0.00 0.00 3.32
271 272 4.026744 TCTGAATGTAGGCAAGTAGAGCT 58.973 43.478 0.00 0.00 0.00 4.09
272 273 4.392921 TCTGAATGTAGGCAAGTAGAGC 57.607 45.455 0.00 0.00 0.00 4.09
273 274 6.154203 TGATCTGAATGTAGGCAAGTAGAG 57.846 41.667 0.00 0.00 0.00 2.43
274 275 6.407412 CCTTGATCTGAATGTAGGCAAGTAGA 60.407 42.308 0.00 0.00 33.06 2.59
275 276 5.757320 CCTTGATCTGAATGTAGGCAAGTAG 59.243 44.000 0.00 0.00 33.06 2.57
276 277 5.189736 ACCTTGATCTGAATGTAGGCAAGTA 59.810 40.000 0.00 0.00 33.06 2.24
277 278 4.018960 ACCTTGATCTGAATGTAGGCAAGT 60.019 41.667 0.00 0.00 33.06 3.16
278 279 4.521146 ACCTTGATCTGAATGTAGGCAAG 58.479 43.478 0.00 0.00 33.88 4.01
279 280 4.574674 ACCTTGATCTGAATGTAGGCAA 57.425 40.909 0.00 0.00 0.00 4.52
280 281 4.574674 AACCTTGATCTGAATGTAGGCA 57.425 40.909 0.00 0.00 0.00 4.75
281 282 5.529060 CCTAAACCTTGATCTGAATGTAGGC 59.471 44.000 0.00 0.00 0.00 3.93
282 283 6.653989 ACCTAAACCTTGATCTGAATGTAGG 58.346 40.000 0.00 1.82 0.00 3.18
283 284 8.478877 AGTACCTAAACCTTGATCTGAATGTAG 58.521 37.037 0.00 0.00 0.00 2.74
284 285 8.375493 AGTACCTAAACCTTGATCTGAATGTA 57.625 34.615 0.00 0.00 0.00 2.29
285 286 7.259088 AGTACCTAAACCTTGATCTGAATGT 57.741 36.000 0.00 0.00 0.00 2.71
286 287 9.838339 ATTAGTACCTAAACCTTGATCTGAATG 57.162 33.333 0.00 0.00 29.35 2.67
289 290 9.667107 CAAATTAGTACCTAAACCTTGATCTGA 57.333 33.333 0.00 0.00 29.35 3.27
290 291 8.893727 CCAAATTAGTACCTAAACCTTGATCTG 58.106 37.037 0.00 0.00 29.35 2.90
291 292 8.832735 TCCAAATTAGTACCTAAACCTTGATCT 58.167 33.333 0.00 0.00 29.35 2.75
292 293 9.457436 TTCCAAATTAGTACCTAAACCTTGATC 57.543 33.333 0.00 0.00 29.35 2.92
293 294 9.239551 GTTCCAAATTAGTACCTAAACCTTGAT 57.760 33.333 0.00 0.00 29.35 2.57
294 295 7.388500 CGTTCCAAATTAGTACCTAAACCTTGA 59.612 37.037 0.00 0.00 29.35 3.02
295 296 7.388500 TCGTTCCAAATTAGTACCTAAACCTTG 59.612 37.037 0.00 0.00 29.35 3.61
296 297 7.452562 TCGTTCCAAATTAGTACCTAAACCTT 58.547 34.615 0.00 0.00 29.35 3.50
297 298 7.008021 TCGTTCCAAATTAGTACCTAAACCT 57.992 36.000 0.00 0.00 29.35 3.50
298 299 7.335171 ACATCGTTCCAAATTAGTACCTAAACC 59.665 37.037 0.00 0.00 29.35 3.27
299 300 8.260270 ACATCGTTCCAAATTAGTACCTAAAC 57.740 34.615 0.00 0.00 29.35 2.01
300 301 7.550196 GGACATCGTTCCAAATTAGTACCTAAA 59.450 37.037 0.00 0.00 35.49 1.85
301 302 7.043565 GGACATCGTTCCAAATTAGTACCTAA 58.956 38.462 0.00 0.00 35.49 2.69
302 303 6.381994 AGGACATCGTTCCAAATTAGTACCTA 59.618 38.462 0.00 0.00 38.25 3.08
303 304 5.189145 AGGACATCGTTCCAAATTAGTACCT 59.811 40.000 0.00 0.00 38.25 3.08
304 305 5.425630 AGGACATCGTTCCAAATTAGTACC 58.574 41.667 0.00 0.00 38.25 3.34
305 306 6.478016 GGTAGGACATCGTTCCAAATTAGTAC 59.522 42.308 3.81 0.00 38.25 2.73
306 307 6.381994 AGGTAGGACATCGTTCCAAATTAGTA 59.618 38.462 3.81 0.00 38.25 1.82
307 308 5.189145 AGGTAGGACATCGTTCCAAATTAGT 59.811 40.000 3.81 0.00 38.25 2.24
308 309 5.523916 CAGGTAGGACATCGTTCCAAATTAG 59.476 44.000 3.81 0.00 38.25 1.73
309 310 5.046159 ACAGGTAGGACATCGTTCCAAATTA 60.046 40.000 3.81 0.00 38.25 1.40
310 311 4.261801 CAGGTAGGACATCGTTCCAAATT 58.738 43.478 3.81 0.00 38.25 1.82
311 312 3.263425 ACAGGTAGGACATCGTTCCAAAT 59.737 43.478 3.81 0.00 38.25 2.32
312 313 2.635915 ACAGGTAGGACATCGTTCCAAA 59.364 45.455 3.81 0.00 38.25 3.28
313 314 2.253610 ACAGGTAGGACATCGTTCCAA 58.746 47.619 3.81 0.00 38.25 3.53
314 315 1.933021 ACAGGTAGGACATCGTTCCA 58.067 50.000 3.81 0.00 38.25 3.53
315 316 4.098960 TCATTACAGGTAGGACATCGTTCC 59.901 45.833 0.00 0.00 35.66 3.62
316 317 5.258456 TCATTACAGGTAGGACATCGTTC 57.742 43.478 0.00 0.00 0.00 3.95
317 318 4.441634 GCTCATTACAGGTAGGACATCGTT 60.442 45.833 0.00 0.00 0.00 3.85
318 319 3.068307 GCTCATTACAGGTAGGACATCGT 59.932 47.826 0.00 0.00 0.00 3.73
319 320 3.319405 AGCTCATTACAGGTAGGACATCG 59.681 47.826 0.00 0.00 0.00 3.84
320 321 4.946478 AGCTCATTACAGGTAGGACATC 57.054 45.455 0.00 0.00 0.00 3.06
321 322 6.077993 TGATAGCTCATTACAGGTAGGACAT 58.922 40.000 0.00 0.00 30.04 3.06
322 323 5.454966 TGATAGCTCATTACAGGTAGGACA 58.545 41.667 0.00 0.00 30.04 4.02
323 324 5.565834 GCTGATAGCTCATTACAGGTAGGAC 60.566 48.000 0.00 0.00 38.45 3.85
324 325 4.524714 GCTGATAGCTCATTACAGGTAGGA 59.475 45.833 0.00 0.00 38.45 2.94
325 326 4.281941 TGCTGATAGCTCATTACAGGTAGG 59.718 45.833 0.00 0.00 42.97 3.18
326 327 5.459536 TGCTGATAGCTCATTACAGGTAG 57.540 43.478 0.00 0.00 42.97 3.18
327 328 5.869649 TTGCTGATAGCTCATTACAGGTA 57.130 39.130 0.00 0.00 42.97 3.08
328 329 4.760530 TTGCTGATAGCTCATTACAGGT 57.239 40.909 0.00 0.00 42.97 4.00
329 330 5.303165 TCATTGCTGATAGCTCATTACAGG 58.697 41.667 0.00 0.00 42.97 4.00
330 331 5.990386 ACTCATTGCTGATAGCTCATTACAG 59.010 40.000 0.00 0.00 42.97 2.74
331 332 5.756833 CACTCATTGCTGATAGCTCATTACA 59.243 40.000 0.00 0.00 42.97 2.41
332 333 6.225703 CACTCATTGCTGATAGCTCATTAC 57.774 41.667 0.00 0.00 42.97 1.89
347 348 1.085091 GAGTGGCTGAGCACTCATTG 58.915 55.000 22.93 0.00 45.11 2.82
348 349 0.390866 CGAGTGGCTGAGCACTCATT 60.391 55.000 25.35 7.21 45.82 2.57
349 350 1.217511 CGAGTGGCTGAGCACTCAT 59.782 57.895 25.35 3.02 45.82 2.90
350 351 1.871126 CTCGAGTGGCTGAGCACTCA 61.871 60.000 25.35 16.35 45.82 3.41
351 352 1.153862 CTCGAGTGGCTGAGCACTC 60.154 63.158 19.94 19.94 43.05 3.51
352 353 2.969016 CTCGAGTGGCTGAGCACT 59.031 61.111 6.82 8.03 0.00 4.40
359 360 0.539051 AAATAGCAGCTCGAGTGGCT 59.461 50.000 27.65 27.65 41.07 4.75
360 361 0.654683 CAAATAGCAGCTCGAGTGGC 59.345 55.000 15.13 17.29 0.00 5.01
361 362 2.015736 ACAAATAGCAGCTCGAGTGG 57.984 50.000 15.13 7.69 0.00 4.00
362 363 4.627467 ACTTTACAAATAGCAGCTCGAGTG 59.373 41.667 15.13 11.95 0.00 3.51
363 364 4.627467 CACTTTACAAATAGCAGCTCGAGT 59.373 41.667 15.13 0.00 0.00 4.18
364 365 4.627467 ACACTTTACAAATAGCAGCTCGAG 59.373 41.667 8.45 8.45 0.00 4.04
365 366 4.388773 CACACTTTACAAATAGCAGCTCGA 59.611 41.667 0.00 0.00 0.00 4.04
366 367 4.641954 CACACTTTACAAATAGCAGCTCG 58.358 43.478 0.00 0.00 0.00 5.03
367 368 4.406943 GCACACTTTACAAATAGCAGCTC 58.593 43.478 0.00 0.00 0.00 4.09
368 369 3.191371 GGCACACTTTACAAATAGCAGCT 59.809 43.478 0.00 0.00 0.00 4.24
369 370 3.191371 AGGCACACTTTACAAATAGCAGC 59.809 43.478 0.00 0.00 0.00 5.25
370 371 6.494893 TTAGGCACACTTTACAAATAGCAG 57.505 37.500 0.00 0.00 0.00 4.24
371 372 6.624861 GCATTAGGCACACTTTACAAATAGCA 60.625 38.462 0.00 0.00 43.97 3.49
372 373 5.743872 GCATTAGGCACACTTTACAAATAGC 59.256 40.000 0.00 0.00 43.97 2.97
373 374 6.127758 TGGCATTAGGCACACTTTACAAATAG 60.128 38.462 0.00 0.00 46.46 1.73
374 375 5.712446 TGGCATTAGGCACACTTTACAAATA 59.288 36.000 0.00 0.00 46.46 1.40
375 376 4.526262 TGGCATTAGGCACACTTTACAAAT 59.474 37.500 0.00 0.00 46.46 2.32
376 377 3.891977 TGGCATTAGGCACACTTTACAAA 59.108 39.130 0.00 0.00 46.46 2.83
377 378 3.491342 TGGCATTAGGCACACTTTACAA 58.509 40.909 0.00 0.00 46.46 2.41
378 379 3.147553 TGGCATTAGGCACACTTTACA 57.852 42.857 0.00 0.00 46.46 2.41
388 389 8.071177 AGGATTTCATTAATATGGCATTAGGC 57.929 34.615 4.78 0.00 43.74 3.93
392 393 9.151177 ACAGAAGGATTTCATTAATATGGCATT 57.849 29.630 4.78 0.00 35.70 3.56
393 394 8.716674 ACAGAAGGATTTCATTAATATGGCAT 57.283 30.769 4.88 4.88 35.70 4.40
394 395 8.537728 AACAGAAGGATTTCATTAATATGGCA 57.462 30.769 0.00 0.00 35.70 4.92
395 396 8.632679 TGAACAGAAGGATTTCATTAATATGGC 58.367 33.333 0.00 0.00 35.70 4.40
439 440 5.505654 CGTGAACTACTGCAAGGACATTTTT 60.506 40.000 0.00 0.00 39.30 1.94
440 441 4.024048 CGTGAACTACTGCAAGGACATTTT 60.024 41.667 0.00 0.00 39.30 1.82
441 442 3.498397 CGTGAACTACTGCAAGGACATTT 59.502 43.478 0.00 0.00 39.30 2.32
485 486 4.794278 AAGACCACAAAACGGAAAAACT 57.206 36.364 0.00 0.00 0.00 2.66
501 502 2.352127 GCAGCATGAGACCAAAAAGACC 60.352 50.000 0.00 0.00 39.69 3.85
558 559 4.631813 GCTTGGTCACTTTACACCTCTATG 59.368 45.833 0.00 0.00 33.36 2.23
559 560 4.532521 AGCTTGGTCACTTTACACCTCTAT 59.467 41.667 0.00 0.00 33.36 1.98
560 561 3.901844 AGCTTGGTCACTTTACACCTCTA 59.098 43.478 0.00 0.00 33.36 2.43
561 562 2.706190 AGCTTGGTCACTTTACACCTCT 59.294 45.455 0.00 0.00 33.36 3.69
567 568 2.481952 CTCTGCAGCTTGGTCACTTTAC 59.518 50.000 9.47 0.00 0.00 2.01
595 596 2.040544 ATCCGCCCTGCAAAACTCG 61.041 57.895 0.00 0.00 0.00 4.18
665 667 6.709145 TTTATTGTGCATGAATGAAACTGC 57.291 33.333 0.00 0.00 0.00 4.40
698 700 5.384787 TGTACACGTAGTAAGTTCGTCATG 58.615 41.667 0.00 0.00 41.61 3.07
699 701 5.611796 TGTACACGTAGTAAGTTCGTCAT 57.388 39.130 0.00 0.00 41.61 3.06
700 702 5.416862 TTGTACACGTAGTAAGTTCGTCA 57.583 39.130 0.00 0.00 41.61 4.35
701 703 6.310197 AGATTGTACACGTAGTAAGTTCGTC 58.690 40.000 0.00 0.00 41.61 4.20
702 704 6.246420 AGATTGTACACGTAGTAAGTTCGT 57.754 37.500 0.00 0.00 41.61 3.85
703 705 6.033196 CCAAGATTGTACACGTAGTAAGTTCG 59.967 42.308 0.00 0.00 41.61 3.95
704 706 6.865205 ACCAAGATTGTACACGTAGTAAGTTC 59.135 38.462 0.00 0.00 41.61 3.01
709 746 5.963176 TGACCAAGATTGTACACGTAGTA 57.037 39.130 0.00 0.00 41.61 1.82
735 772 9.670719 CTGGATTTTCTCTTTGTTCTAAACTTC 57.329 33.333 0.00 0.00 0.00 3.01
741 778 6.772716 AGTTGCTGGATTTTCTCTTTGTTCTA 59.227 34.615 0.00 0.00 0.00 2.10
750 787 1.131315 GCGGAGTTGCTGGATTTTCTC 59.869 52.381 0.00 0.00 0.00 2.87
752 789 0.171231 GGCGGAGTTGCTGGATTTTC 59.829 55.000 0.00 0.00 34.52 2.29
757 794 4.373116 GACGGCGGAGTTGCTGGA 62.373 66.667 13.24 0.00 45.70 3.86
760 797 3.665675 GATGGACGGCGGAGTTGCT 62.666 63.158 13.24 0.00 34.52 3.91
761 798 3.195698 GATGGACGGCGGAGTTGC 61.196 66.667 13.24 0.00 0.00 4.17
762 799 1.375396 TTGATGGACGGCGGAGTTG 60.375 57.895 13.24 0.00 0.00 3.16
764 801 2.264794 GTTGATGGACGGCGGAGT 59.735 61.111 13.24 0.00 0.00 3.85
766 803 4.090588 GGGTTGATGGACGGCGGA 62.091 66.667 13.24 0.00 0.00 5.54
786 832 1.204941 GGAAGTCCTTCGCTTAGCAGA 59.795 52.381 4.70 0.00 40.37 4.26
800 846 3.682999 GCAGATAAGGGAGTTGGGAAGTC 60.683 52.174 0.00 0.00 0.00 3.01
827 874 0.109319 CACCGCCCAATGTACTTTGC 60.109 55.000 14.43 5.16 0.00 3.68
905 952 4.347000 TGAGATACTGGGGCTATTTGTACC 59.653 45.833 0.00 0.00 0.00 3.34
929 976 7.536159 TGCTCTGTGATGATATCTGTATCTT 57.464 36.000 3.98 0.00 38.03 2.40
931 978 8.774890 ATTTGCTCTGTGATGATATCTGTATC 57.225 34.615 3.98 0.00 37.75 2.24
943 990 6.039047 CCTGCTATGTTTATTTGCTCTGTGAT 59.961 38.462 0.00 0.00 0.00 3.06
946 993 4.096984 GCCTGCTATGTTTATTTGCTCTGT 59.903 41.667 0.00 0.00 0.00 3.41
947 994 4.498682 GGCCTGCTATGTTTATTTGCTCTG 60.499 45.833 0.00 0.00 0.00 3.35
981 1028 4.802918 GCCATGGTAAGTTACTCTGTGTGT 60.803 45.833 14.67 0.00 0.00 3.72
988 1035 2.289565 GGCAGCCATGGTAAGTTACTC 58.710 52.381 14.67 4.14 0.00 2.59
992 1039 0.405585 ACTGGCAGCCATGGTAAGTT 59.594 50.000 16.64 0.00 30.82 2.66
1006 1053 1.078143 GGAGATGGTGGACACTGGC 60.078 63.158 2.13 0.00 0.00 4.85
1008 1055 1.349026 ACAAGGAGATGGTGGACACTG 59.651 52.381 2.13 0.00 0.00 3.66
1009 1056 1.349026 CACAAGGAGATGGTGGACACT 59.651 52.381 2.13 0.00 0.00 3.55
1079 1126 0.886490 AGCTGCCGTGTCCAAAAGAG 60.886 55.000 0.00 0.00 0.00 2.85
1124 1171 0.606604 TGGAGCTTCCGGTGTAGAAC 59.393 55.000 0.00 0.00 40.17 3.01
1128 1175 0.759959 TTGTTGGAGCTTCCGGTGTA 59.240 50.000 0.00 0.00 40.17 2.90
1131 1178 0.818040 GTGTTGTTGGAGCTTCCGGT 60.818 55.000 0.00 0.00 40.17 5.28
1139 1186 1.966451 GGAGGCGGTGTTGTTGGAG 60.966 63.158 0.00 0.00 0.00 3.86
1150 1197 2.830370 GGAAGGCATTGGAGGCGG 60.830 66.667 0.00 0.00 39.37 6.13
1151 1198 1.039233 AATGGAAGGCATTGGAGGCG 61.039 55.000 0.00 0.00 39.37 5.52
1161 1208 1.657751 GAACTGCGGGAATGGAAGGC 61.658 60.000 0.00 0.00 0.00 4.35
1206 1253 3.006967 CGACCTTCGGGATAGGAATGAAT 59.993 47.826 0.00 0.00 36.00 2.57
1440 1487 1.470996 TTCATGGGCTGGTGGTTTGC 61.471 55.000 0.00 0.00 0.00 3.68
1462 1509 1.495878 GCAGTCTCATGCTATGACGG 58.504 55.000 0.00 0.00 43.07 4.79
1519 1566 7.201427 CCAACAGAACAAACATTACAAACACAG 60.201 37.037 0.00 0.00 0.00 3.66
1563 1615 4.958509 TGCATTCACAATCAACACCAAAT 58.041 34.783 0.00 0.00 0.00 2.32
1579 1631 7.378728 GGACAGTACAAAAACTTAACTGCATTC 59.621 37.037 0.00 0.00 40.94 2.67
1582 1634 5.883673 AGGACAGTACAAAAACTTAACTGCA 59.116 36.000 0.00 0.00 40.94 4.41
1681 1733 5.156355 GTTGAAAGTTGACACCATGCTATG 58.844 41.667 0.00 0.00 0.00 2.23
1730 1943 8.964476 TCTTTTCTGTCAAACAAGATAAGAGT 57.036 30.769 0.00 0.00 29.73 3.24
1734 1947 9.950680 GTCATTCTTTTCTGTCAAACAAGATAA 57.049 29.630 0.00 0.00 0.00 1.75
1735 1948 8.282592 CGTCATTCTTTTCTGTCAAACAAGATA 58.717 33.333 0.00 0.00 0.00 1.98
1736 1949 7.012327 TCGTCATTCTTTTCTGTCAAACAAGAT 59.988 33.333 0.00 0.00 0.00 2.40
1737 1950 6.315144 TCGTCATTCTTTTCTGTCAAACAAGA 59.685 34.615 0.00 0.00 0.00 3.02
1738 1951 6.412072 GTCGTCATTCTTTTCTGTCAAACAAG 59.588 38.462 0.00 0.00 0.00 3.16
1739 1952 6.255215 GTCGTCATTCTTTTCTGTCAAACAA 58.745 36.000 0.00 0.00 0.00 2.83
1740 1953 5.501736 CGTCGTCATTCTTTTCTGTCAAACA 60.502 40.000 0.00 0.00 0.00 2.83
1741 1954 4.898488 CGTCGTCATTCTTTTCTGTCAAAC 59.102 41.667 0.00 0.00 0.00 2.93
1742 1955 4.569162 ACGTCGTCATTCTTTTCTGTCAAA 59.431 37.500 0.00 0.00 0.00 2.69
1743 1956 4.116961 ACGTCGTCATTCTTTTCTGTCAA 58.883 39.130 0.00 0.00 0.00 3.18
1744 1957 3.713288 ACGTCGTCATTCTTTTCTGTCA 58.287 40.909 0.00 0.00 0.00 3.58
1745 1958 3.982058 AGACGTCGTCATTCTTTTCTGTC 59.018 43.478 26.17 0.00 34.60 3.51
1746 1959 3.978687 AGACGTCGTCATTCTTTTCTGT 58.021 40.909 26.17 0.00 34.60 3.41
1747 1960 6.448053 TTTAGACGTCGTCATTCTTTTCTG 57.552 37.500 26.17 0.00 34.60 3.02
1748 1961 7.653767 ATTTTAGACGTCGTCATTCTTTTCT 57.346 32.000 26.17 5.75 34.60 2.52
1749 1962 8.645487 AGTATTTTAGACGTCGTCATTCTTTTC 58.355 33.333 26.17 10.53 34.60 2.29
1750 1963 8.530269 AGTATTTTAGACGTCGTCATTCTTTT 57.470 30.769 26.17 7.17 34.60 2.27
1751 1964 8.027771 AGAGTATTTTAGACGTCGTCATTCTTT 58.972 33.333 26.17 7.89 34.60 2.52
1752 1965 7.536855 AGAGTATTTTAGACGTCGTCATTCTT 58.463 34.615 26.17 8.60 34.60 2.52
1753 1966 7.086230 AGAGTATTTTAGACGTCGTCATTCT 57.914 36.000 26.17 13.72 34.60 2.40
1754 1967 7.737525 AAGAGTATTTTAGACGTCGTCATTC 57.262 36.000 26.17 11.03 34.60 2.67
1755 1968 9.448294 GATAAGAGTATTTTAGACGTCGTCATT 57.552 33.333 26.17 10.06 34.60 2.57
1756 1969 8.838365 AGATAAGAGTATTTTAGACGTCGTCAT 58.162 33.333 26.17 13.60 34.60 3.06
1757 1970 8.206325 AGATAAGAGTATTTTAGACGTCGTCA 57.794 34.615 26.17 10.36 34.60 4.35
1758 1971 8.945930 CAAGATAAGAGTATTTTAGACGTCGTC 58.054 37.037 17.70 17.70 0.00 4.20
1759 1972 8.457261 ACAAGATAAGAGTATTTTAGACGTCGT 58.543 33.333 10.46 0.00 0.00 4.34
1760 1973 8.838452 ACAAGATAAGAGTATTTTAGACGTCG 57.162 34.615 10.46 0.00 0.00 5.12
1808 2021 3.567397 AGACGAGCATGGTAGGAATAGT 58.433 45.455 9.85 0.00 0.00 2.12
1809 2022 4.592485 AAGACGAGCATGGTAGGAATAG 57.408 45.455 9.85 0.00 0.00 1.73
1810 2023 5.116180 CAAAAGACGAGCATGGTAGGAATA 58.884 41.667 9.85 0.00 0.00 1.75
1811 2024 3.914426 AAAGACGAGCATGGTAGGAAT 57.086 42.857 9.85 0.00 0.00 3.01
1812 2025 3.244422 ACAAAAGACGAGCATGGTAGGAA 60.244 43.478 9.85 0.00 0.00 3.36
1813 2026 2.301870 ACAAAAGACGAGCATGGTAGGA 59.698 45.455 9.85 0.00 0.00 2.94
1826 2039 7.312899 TCTTTCCTTTCTGTCAAACAAAAGAC 58.687 34.615 12.30 0.00 32.81 3.01
1874 2087 1.539388 TGCCATGCCGTCTTTGTTTAG 59.461 47.619 0.00 0.00 0.00 1.85
1886 2099 6.037062 GGTGTTTATTTTCTTAATGCCATGCC 59.963 38.462 0.00 0.00 0.00 4.40
1913 2126 2.980233 GCCGTGCCTGCTTCTTGT 60.980 61.111 0.00 0.00 0.00 3.16
2020 2234 8.822805 TGTCTGGTGTTTATTATTTCTCCTACT 58.177 33.333 0.00 0.00 0.00 2.57
2049 2263 5.221106 CCAGGAGTATATTGTTGCATGGTTG 60.221 44.000 0.00 0.00 0.00 3.77
2050 2264 4.889409 CCAGGAGTATATTGTTGCATGGTT 59.111 41.667 0.00 0.00 0.00 3.67
2051 2265 4.165950 TCCAGGAGTATATTGTTGCATGGT 59.834 41.667 0.00 0.00 0.00 3.55
2052 2266 4.516698 GTCCAGGAGTATATTGTTGCATGG 59.483 45.833 0.00 0.00 0.00 3.66
2168 2382 9.423061 GTTAACATCAAATTGGTATCTTTTGCT 57.577 29.630 0.00 0.00 31.88 3.91
2173 2387 7.673926 ACCAGGTTAACATCAAATTGGTATCTT 59.326 33.333 8.10 0.00 36.02 2.40
2178 2392 5.144100 TCACCAGGTTAACATCAAATTGGT 58.856 37.500 8.10 0.00 38.15 3.67
2195 2409 7.282901 TGATGTATCCATGTTTGTTATCACCAG 59.717 37.037 0.00 0.00 0.00 4.00
2265 2485 7.650504 GGAACTTAGTGGTGTCCATTTTTAAAC 59.349 37.037 0.00 0.00 35.28 2.01
2351 2577 4.013267 CTCCAAAGAGGTGACTGTTCAT 57.987 45.455 0.00 0.00 44.30 2.57
2381 2607 2.109128 TGGAGTGCCTTTGATAAACCCA 59.891 45.455 0.00 0.00 34.31 4.51
2403 2629 8.543774 AGTCTCACTGTAATTTCAACTCCATAT 58.456 33.333 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.