>input_sequence_79615
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------ATGGCTGCCAGTGTCCACCATCTCCTTGTGCTGCTCCTAGCCTTCACAGCCTTCAATGGCAGCTCTGCGGCATC
TCGTCCTCTTTTGGACACGGCAGCTGCACCAGAGGCCACACCAGCTCAGCGTTCTACACCGGAAGCTCCAACAACACCGC
CTCCAATGCCTTCCATTCCCGCAGTTCCGAAACTGACAATGCCGCCAATACCATTCATTCCTATCCCGAAGGTCGCCATG
GCACCAACCGCCCCTGGCACAGTTCCATCTCTTCCGATTCCGGCGATCCCAACCACCATGCCGACCATTCCTACTTTGCC
TGTTACCATGCCACCAATGCCCTCAGTTCCAATTACCATTCCATCCATTCCGATCACAATACCAACAACTATCCCTACCA
TTCCTGGGTTCCAGATGCCACCTATTCCATTCATGTCCCCACCTCCGCAAACCACCAGCCCATGA---------------
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>chr2B_1_TraesCS2B01G494800
AGAAGTTTATGGACTGCTGTTGGCGGTGAAGATTGCAGCTCAACTACATGTGCAGGATCCGAAGTTTTTGACAGACTCTT
AAGTGCTTGCCTCAGCGGTTGTACAACCTGATATTACTAAAGCAGGTTCGTGGGCTATCCGGCCAATCTTAGCTGCTATC
CAGACCACGCCTTCATTTCATCCATATAGAATACTCAAAGTGCACAGAAGTCTGAATTTCAAGGCACACCATCAGGCTAG
ACTTGCTGTTAAAGTGCAAGATAAACCTTTTAGCTCTACTTGCCTACATTCAGATCAAGGTTTAGGTACTAATTTGGAAC
GATGTCCTACCTGTAATGAGCTATCAGCAATGAGTGCTCAGCCACTCGAGCTGCTATTTGTAAAGTGTGCCTAATGCCAT
ATTAATGAAATCCTTCTGTTCAAAAAAAAAAGACTATTAAAAAATGTCCTTGCAGTAGTTCACGTTTCTTGCTCGGTATT
CCCACAGTTTTTCCGTTTTGTGGTCTTTTTGGTCTCATGCTGCAGACTGTCTCATTTCGGCATTTATGATAAAGTATACA
TAGAGGTGTAAAGTGACCAAGCTGCAGAGATGCTTCGAGTTTTGCAGGGCGGATGCCCAGCTGC-TTTTTTCTGGCAGGA
CGAAACCTGAAACCTGACCGTGTTTAGCAGTTTCATTCATGCACAATAAATTGGTAGCCCATGACG--------------
---------------------AACTTACTACGTGTACAATCTTGGTCATCAGAAGTTTAGAACAAAGAGAAAATCCAGCA
ACTC---------CGCCGTCCATCAACCCAATCTGCTAAGCGAAGGACTTCCCAA-CTCCCTTATCTGCATCTGCAAAGT
ACATTGGGCGGTGAACAACCAGACCAAGGACTTCAGATCAACCACCAGTGGTGGCCATAGTATATCATCTTGGTACAAAT
AGCCCCAGTATCTCAAAGATACAGATATCATCACAGAGCAAATAAACATAGCAGGCCTGCCTAGCGCACACACAGAGTAA
CTTACCATGGCTGCCAGTGTCCACCATCTCCTTGTGCTGCTCCTAGCCTTCACAGCCTTCAATGGCAGCTCTGCGGCATC
TCGTCCTCTTTTGGACACGGCAGCTGCACCAGAGGCCACACCAGCTCAGCGTTCTACACCGGAAGCTCCAACAACACCGC
CTCCAATGCCTTCCATTCCCGCAGTTCCGAAACTGACAATGCCGCCAATACCATTCATTCCTATCCCGAAGGTCGCCATG
GCACCAACCGCCCCTGGCACAGTTCCATCTCTTCCGATTCCGGCGATCCCAACCACCATGCCGACCATTCCTACTTTGCC
TGTTACCATGCCACCAATGCCCTCAGTTCCAATTACCATTCCATCCATTCCGATCACAATACCAACAACTATCCCTACCA
TTCCTGGGTTCCAGATGCCACCTATTCCATTCATGTCCCCACCTCCGCAAACCACCAGCCCATGAAGGCCGTCATAGCAT
GAGACTGCTAGTCAGGGGCTTGATTCGTACACATAGTTATTATCACTGTGTTTGTAATGTTT--GTTCTGTTGGATGTT-
--TTACTGGCTTGCATTTGGTGTTGATTGTGAATGCAGTTAAGTTTTTGTACTGTCCTGTTTGTTAATAAAGCATTGCTT
GGTTTGTTTAAGTTACTGCAAAAGATAAGAATCCTGAATTCCTTTTTTGAACCA--------------------------
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-------------------------------------------------------TAGCATGGTGTCAACTTTCAACAGA
AAAGAATGATAACATCTAATATACTCTTATCTTGTTTGACAGAAAAGAATGACGACGTCTAAAATACTCTTATCTTGTTT
GATAGAAAAGAATGATACCAACTATTCCTACCATGCTCGTCTTTTGTTTGACAGAAAGGAAAGATAGCATTTTCCTTTCA
ACAAAACTAAACAAAGACGGCATGGCATTAAGAAAATAAACACCAACAAGAAGCAGGCACGGCATGGTAATTTACCAGGA
CATGCTATATGGCAAGTATTAGCTAGATGTAAGCTTCAGTGTTTCTGAACAAAT-CCGTGGTTATCTCGGACTAGTAGGA
GAAATAATAAACACCAGACATGCAACCATGCAACAATATACTCCTGGACTTCCAAACAATGAGAACAGAAAAAGGAAAGA
AAAAAAAAACATTGAGCCATAGATGCAAGAGAAGATTTATCCATCAAACTGACACATTGAAAGCAAAAGATACCAATTTG
ATGTTAACCTGGTGATAACAAACATGGATA------CATCAGAAATTTTCATAGCATAAGACAGCACTAACACAGAATAA
CAAAGTTTAAAAATGGACACCACTAAGTTCCATTGATTGTAACTTAAAAAAG-ATACATCATGTGA-----AGCTAATAT
ATCTATAATGTTGGGAATGAACAGTCACCTCTTTGGAGGTGGATGTTGGGTTTATCAAAGGCACTCCAATATGGAGTTGA
AATTACAGTGAGACTAGGGAGTAAATACTTCTGGTGCCTACATG
>chr2D_432
GACTATTCAAG---------------------------------------------------------------------
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------------------------------------------AATGTCCTTGCAGTAGTTCACGTTTCTTGCTCGGTATC
CCCACTGTTTTTCCGTTTTGTAGTCTTTTTGGTCTCATGCTGCAGACTGTCTCATTTCGGCATTTATAATAAAGTATA--
--GGC--CTAAAGTGACCAGGCTGCAGAGATGCTTGGAGTGTGGCATGGTGGATGCCCAGCTGAATTTTTTCTGGCAGGA
CGAAACCTGAAACCTGACCGTGTTTATCAGTTTCATTCATGCACAAGAAATTGGTAGCCATGCCACTTTCATCGAGAGAA
AAAGATTCCCACCCACGACGAAACTCACTATGCGTACAATCTTGGTCATCAAAAGTT-----------------------
--------------------CATCAACCCAAACTGCTAAGCGAAGAAGTTCCCAA-CTCCCTGATCTGAATCTCCAAAGT
ACATTGGGTGGTGAACAACCAGAACAAGGACTTCAGATCAACCATTG---------------------------------
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-----------------------------------------------------------CGGCAGTTCCAACAACATTGC
CTCCAATACCTTCCATTCCTGCAGTTCCGAAACTGACAATGCCGCCAATACCGTTCATTCCTATCCCGAAGGTCGCCATG
GCACCAACCGCCCCTGGCACAGTTCCATCTCTTCCGATCCCGGCGATCCCAACCACCATGCCGACCATTCCTACTTTGCC
TGTTACCATGCCACCAATGCCCTCAGTTCCAATTACCATTCCATCCATTCCGATTACAACACCAACAACCATCCCTACCA
TTCCTGGGTTCCAGATGCCACCTATTCCATTCATGTCCCCACCTCCACAAACCACCAGCCCGTGAAGGTCTTCATAGCAT
GAGACTGCTAGTCAGGGGTTTGATTCGTACACATAGTTATTATCAGTGTGTTTGAAATGTTT--GTTCTGTTGGATGTT-
--TTACTGGCTTGCGTTTGGTGTTGATTGTAAACGCAGATAAGTTTTTGTACTGTCCTGTTGGTTAATAAAGCATCACTT
GGTTTGTTTAAGTTGCTGCAAAGGATAAGAATCGTGAATTCCTATTTTGAATG---------------------------
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------------------------------------------------------GTAGCATGGTGTCAACTGTCAACAGA
AAAGAATGGTAACAT-------------------------------------------CTACAAGACGTTTATCTTGTTT
GACAGAAAA-AATGATACCA------CCTACCATGCTCAACTTTTGTTTGACAGAATGGAAAGATATCATTTTCCTTTCA
ACAAAATTAAACAAAGACAGCATGGCATTAGGAAAATAAACACCAGCAAGAAGCAGGCACGGCGTGGTAATTTACCAGGA
CATGCTATATGGCAAGAATTAGCTAGATGTAAGCTTTGGTGTTTCTGGACAAATTCCATGGCTATCTCGGACTCGTAGGA
GAAATAATAAACACCAGA--------CATGCAACAAGATACTCCTGGACTTCCAAATAATGAGAACAGAAAAAGGAAAGG
AAAACAAA-CATTGAGCAATAGATGCAAGAGAAGATTTATCCATCAAACTGTCGCATTGAA-GCAAGAGATGACAATTTG
ATGTTAACATGGTGATAATGAACATGGATATATTATCATCAGAAATTTTCATAGCATAAGACAGCACTAACACGCGATAA
CAAAATTAAAAAATGCAGAACACTAAGTTCCATTGATTGTAACTTAAAAAAG-ATACAGCATGTGAACTGAAGCTAATAT
ATCTATACTGTTGGGAGTGAACAGTCACCTCCATGGAGGTGGATGTAGGGTTTATCAAAGGCACTCCAGTATGAGTTGAG
-ATTACAGTGAGACTATGGAGTAAATGCTTCTGGTGCCTACATG
>chr2A_453
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----------------------------------------------------CAGTAGTCCACGTTTCTTGCTCGGTATT
CCCACTCTTTTTCTGTTTTGTAGTCTTTTTGGTCTCATGCTGCAGACTGTCTCATTTCAGCATTTATAATAAAGTATA--
--GAGGTCTAGAGTGACCAAGCTGCAGAGATGCTTGGAGTGTGGCAGGGCGGATGCCCAGCTGCTTTTTTTCTGGCAGGA
CCAAACCTGAAACCTGACCGTGTTTATCAGTTTCATTCATGCACAAGAAATTGGTAGCCATGCCACCTTCATCGAGAGAA
AAAGATTCCCACCCACGATG-AACTCACTACGTGTACAATCTTGGTAATCAAAAGTTCAGAACAAAAAAAAAAATCCCAA
CCACTATGAACTGCGCCGTCCATCAACCCAAGCTGCTAAGCGAAGAACTTCCCAAACTCCCTGATCTGCATCTCGAAAGT
ACATTGGGCGGTGAACAACCAGACCAAGGACTTCAGATCAACCACCAGTGGTGGCCATAGTATATCATCTTTGTACAAAT
AGCCCCAGTATCTCAGATTCACAGATATCTTC--AGAGCAAATAAACATAGAAGGCCTGCCTAGCGCGCACACACAGTCA
CTTACCATGGCTCCAGGTGTCCACCATCTCCTTGTGCTGCTCCTAGCCTTCACAGCCTTCAATGGCAGCTCTGCGGCGTC
TCGTCGTCTTTTGGACACGGCAGCTGCACCAGAGGCCACACCAGCTCAGCCTTCGACGCCGGAAGTTCCAACCACATTGC
CTTCAATTCCTTCCATTCCCGCAGTTCCGAAACTCACAATGCCACCAATACCGTTCATTCCGATCCCGAAGGTCGCCATG
GCACCAACCGCCACTGGCACAGTTCCATCTCTTCCGATTCCGGCGATCCCAACCACCATGCCGACCATTCCTACTTTGCC
TGTTACCATGCCACCAATGCCCTCAATTCCAACTATTATTCCATCCATCCCGATCACAATACCAACAACTATGCCTACCA
TTCCTGGGTTCCAGATGCCACCTATTCCATTCATGTCCCCACCTCCAGAAACCACCAGCCCATGAAGGTCATCATAGCAT
GAGACTGCTAGTCAGGGGTTTGATTCGTACACATAA-TATTATCAGTGTGTTTGTAATGTTTTTGTTCTATTGGATGTTT
TATTACTGGCTTGCGTTTGGTGTTGATTGTAAACGCAGTTAAGTTTTTGTACTGTCCTGTTTGTTAATAAAGCATTGCTT
GGTTTGTTTAAGTTACTGCAAAGGATAAGAATAGTGAATTCCTTTTTTGAATGATACTCCCTCCGTTCCTAAATATAAGT
CTTTTTAGAGATTCCAATAAATGACTACATACGGAACAAAATGAGTGAATCTACACTCTAAAATATGTCTATATACATCC
GTATGTAGTCCATAGTGGAATGTCTAAAAATACTTATATTTAGAAGCGGAGGGAGTAGCATGGTGTCAACTGTCAACAGA
AAAGAATGATGACAT-------------------------------------------CTAAAATGCTCTTATCTTGTTT
GATAGAAAAGAATGATACTAG----------CATGCTCATCTTTTGTTTGACAGAAAGGAAAGATAGCATTTGTCTTTCA
ACAAAATTAAACAAAGACAGCATGGCATTAACTGAATAAACACCAGCAGGAAGCAGGCACGGCATGTTAATTTACCAAGA
CATGCT-TATGACAAGTATTGGCTAGATGTAAGCTTCAGTGTATCTGAACAAATCCCGTGGCTATCTCGGACTCGTAGGA
GAAATAATAAACACCAGA--------CATGCAACAAGATACTCCTGGACTTCCAAACAGTGAGAAC----------AAGG
AAAAAAAAACATTACGCCATAGATGGAAGAGAGGATTTATCCATCAAACTGACACATTGAA-GCAAGAGATTCAAATTTG
ATGTTAAC--GGTGATAACAAACATGGATACATTATCATCAGAAATTTTCATAGCATAAGACAGCACTAACACAGAATAA
CAAAATTTTAAAATGGGCACCACTAAGTTCCATTGATTGTAACTTAAAAAAGGATACATCATGTGA-----AGCTAATAT
ATCTATAATGATGGGAGTGAACAATCACCTCTTTGGAGGTGGATGTAGGGTTTATCAAAGGCACTCCAGTATGGAGTTGA
AATTACAGTGAGACTAGAGAGTAAATACTTCTGGTGCCTACATG
>SNPs
SSSSS--S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------
-----S---------------S---------------------------------------------S----------SS
SS-----S---------------------------S----S-S-------------------------------------
--------------------------S-------------------S------------SSSSSSS--------------
-------------------------S-------------------------S-----S--------S-S----SS-SSS-
S-S----------------------------S-------------S----------------S----------S------
-----------------------------------------------------------------------S--------
---------------S-SSS---------S--SS-----------------S---------------S------S---S-
------------S-SS-------------------------------------------------------------S--
-----S--------------------------------------------S---S--S-------S----------SS--
-------S--------------------------------------------S---------------------------
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----------------------------------------------S---------------------S-S---------
------------------S--------------------------S----------------------------------
--------------S---------------S--S----------------------------------------------
----------------------S----------S-----------------SS---------------------------
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-----------------------------------------------------------------------S--------
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
--------------------SSSSSS------------S-----------------------------------------
------S-----------S--------------------------S----------------------------------
-------------------------------------------------------------S-----------S------
------------------SSSSSSSS----------S------------------------------------------S
-------------------------------------------------------------S----S----S--------
--------S-----------------------------------------------------------------------
----S---------------------------------------------------------------------------
----------------S-----------------------------S---------------------S-----------
--------------------------------------------
>forward_239
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-----------------------------------------------------------CAAGGCACACCATCAGGCTA-
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>reverse_1171
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--------------------------------------------------GTTCTACACCGGAAGCTCCA----------
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>forward_240
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------------------------------------------------------------AAGGCACACCATCAGGCTAG
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>reverse_1175
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------------------------------------------------------TACACCGGAAGCTCCAACAA------
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>forward_242
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--------------------------------------------------------------GGCACACCATCAGGCTAG
AC------------------------------------------------------------------------------
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>reverse_1178
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---------------------------------------------------------ACCGGAAGCTCCAACAACAC---
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>forward_1039
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-----------------------------------------------------------CCTAGCGCACACACAGAGTA-
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>reverse_2087
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------CTAAACAAAGACGGCATGGCA-----------------------------------------------------
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