Multiple sequence alignment - TraesCS2B01G489800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G489800 chr2B 100.000 3011 0 0 1 3011 687229387 687226377 0.000000e+00 5561.0
1 TraesCS2B01G489800 chr2B 94.667 75 3 1 1612 1685 738408408 738408482 6.820000e-22 115.0
2 TraesCS2B01G489800 chr2B 97.059 34 1 0 1226 1259 94251561 94251528 1.170000e-04 58.4
3 TraesCS2B01G489800 chr2B 96.875 32 1 0 1226 1257 94090359 94090328 2.000000e-03 54.7
4 TraesCS2B01G489800 chr2A 92.965 2061 79 21 513 2570 711510724 711508727 0.000000e+00 2942.0
5 TraesCS2B01G489800 chr2A 88.698 407 31 4 83 474 711511237 711510831 1.620000e-132 483.0
6 TraesCS2B01G489800 chr2A 95.000 120 6 0 2838 2957 78845571 78845690 3.960000e-44 189.0
7 TraesCS2B01G489800 chr2A 97.059 34 1 0 1226 1259 60760984 60760951 1.170000e-04 58.4
8 TraesCS2B01G489800 chr2D 93.417 1595 49 18 662 2228 572264069 572262503 0.000000e+00 2313.0
9 TraesCS2B01G489800 chr2D 93.400 500 20 10 2332 2822 572262481 572261986 0.000000e+00 728.0
10 TraesCS2B01G489800 chr2D 92.509 267 15 3 55 316 572264837 572264571 7.880000e-101 377.0
11 TraesCS2B01G489800 chr2D 90.000 220 18 3 397 612 572264293 572264074 6.360000e-72 281.0
12 TraesCS2B01G489800 chr7B 95.798 119 5 0 2839 2957 81425106 81424988 3.060000e-45 193.0
13 TraesCS2B01G489800 chr7B 93.548 124 8 0 2836 2959 744645413 744645536 5.130000e-43 185.0
14 TraesCS2B01G489800 chr7B 82.292 96 17 0 1333 1428 504439753 504439848 1.920000e-12 84.2
15 TraesCS2B01G489800 chr7B 73.504 234 57 4 1220 1449 578438787 578439019 1.920000e-12 84.2
16 TraesCS2B01G489800 chr4B 95.798 119 5 0 2839 2957 173716101 173716219 3.060000e-45 193.0
17 TraesCS2B01G489800 chr3D 94.309 123 7 0 2834 2956 445035128 445035250 3.960000e-44 189.0
18 TraesCS2B01G489800 chr3D 95.763 118 4 1 2839 2956 609106194 609106310 3.960000e-44 189.0
19 TraesCS2B01G489800 chr5D 94.958 119 6 0 2838 2956 118840450 118840568 1.430000e-43 187.0
20 TraesCS2B01G489800 chr4D 94.958 119 6 0 2838 2956 314583172 314583290 1.430000e-43 187.0
21 TraesCS2B01G489800 chr1A 94.958 119 6 0 2839 2957 208212650 208212532 1.430000e-43 187.0
22 TraesCS2B01G489800 chr1A 77.333 150 26 8 1304 1448 60955873 60955727 6.920000e-12 82.4
23 TraesCS2B01G489800 chr7D 75.434 346 53 26 1138 1462 37234976 37234642 4.050000e-29 139.0
24 TraesCS2B01G489800 chr7D 79.675 123 20 4 1310 1428 478576075 478576196 1.920000e-12 84.2
25 TraesCS2B01G489800 chr5B 98.571 70 1 0 1612 1681 700434608 700434539 1.130000e-24 124.0
26 TraesCS2B01G489800 chr1B 79.333 150 23 8 1304 1448 100308885 100309031 6.870000e-17 99.0
27 TraesCS2B01G489800 chr1B 92.647 68 5 0 1609 1676 618912128 618912195 6.870000e-17 99.0
28 TraesCS2B01G489800 chr1D 78.667 150 24 8 1304 1448 62858266 62858412 3.200000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G489800 chr2B 687226377 687229387 3010 True 5561.00 5561 100.0000 1 3011 1 chr2B.!!$R3 3010
1 TraesCS2B01G489800 chr2A 711508727 711511237 2510 True 1712.50 2942 90.8315 83 2570 2 chr2A.!!$R2 2487
2 TraesCS2B01G489800 chr2D 572261986 572264837 2851 True 924.75 2313 92.3315 55 2822 4 chr2D.!!$R1 2767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 678 0.036388 GACGGAGCCTCATCCAACAA 60.036 55.0 0.0 0.0 39.53 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 2337 0.034863 AGAGACAGAGGAGGGACGAC 60.035 60.0 0.0 0.0 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.946942 TTGAGGGCTGGATGAGATATATC 57.053 43.478 4.42 4.42 0.00 1.63
23 24 4.293494 TGAGGGCTGGATGAGATATATCC 58.707 47.826 9.18 2.12 43.56 2.59
24 25 3.303938 AGGGCTGGATGAGATATATCCG 58.696 50.000 9.18 0.00 45.70 4.18
29 30 5.667539 CTGGATGAGATATATCCGGTTGT 57.332 43.478 9.18 0.00 45.70 3.32
30 31 6.775594 CTGGATGAGATATATCCGGTTGTA 57.224 41.667 9.18 0.00 45.70 2.41
31 32 6.775594 TGGATGAGATATATCCGGTTGTAG 57.224 41.667 9.18 0.00 45.70 2.74
32 33 6.490492 TGGATGAGATATATCCGGTTGTAGA 58.510 40.000 9.18 0.00 45.70 2.59
33 34 7.126061 TGGATGAGATATATCCGGTTGTAGAT 58.874 38.462 9.18 0.00 45.70 1.98
34 35 7.068716 TGGATGAGATATATCCGGTTGTAGATG 59.931 40.741 9.18 0.00 45.70 2.90
35 36 6.208988 TGAGATATATCCGGTTGTAGATGC 57.791 41.667 9.18 0.00 0.00 3.91
36 37 5.952347 TGAGATATATCCGGTTGTAGATGCT 59.048 40.000 9.18 0.00 0.00 3.79
37 38 6.095580 TGAGATATATCCGGTTGTAGATGCTC 59.904 42.308 9.18 3.41 0.00 4.26
38 39 6.191315 AGATATATCCGGTTGTAGATGCTCT 58.809 40.000 9.18 0.00 0.00 4.09
39 40 6.665680 AGATATATCCGGTTGTAGATGCTCTT 59.334 38.462 9.18 0.00 0.00 2.85
40 41 7.834681 AGATATATCCGGTTGTAGATGCTCTTA 59.165 37.037 9.18 0.00 0.00 2.10
41 42 6.859112 ATATCCGGTTGTAGATGCTCTTAT 57.141 37.500 0.00 0.00 0.00 1.73
42 43 5.552870 ATCCGGTTGTAGATGCTCTTATT 57.447 39.130 0.00 0.00 0.00 1.40
43 44 6.665992 ATCCGGTTGTAGATGCTCTTATTA 57.334 37.500 0.00 0.00 0.00 0.98
44 45 6.085555 TCCGGTTGTAGATGCTCTTATTAG 57.914 41.667 0.00 0.00 0.00 1.73
45 46 5.831525 TCCGGTTGTAGATGCTCTTATTAGA 59.168 40.000 0.00 0.00 0.00 2.10
46 47 5.921408 CCGGTTGTAGATGCTCTTATTAGAC 59.079 44.000 0.00 0.00 0.00 2.59
47 48 5.625721 CGGTTGTAGATGCTCTTATTAGACG 59.374 44.000 0.00 0.00 0.00 4.18
48 49 5.921408 GGTTGTAGATGCTCTTATTAGACGG 59.079 44.000 0.00 0.00 0.00 4.79
49 50 6.238953 GGTTGTAGATGCTCTTATTAGACGGA 60.239 42.308 0.00 0.00 0.00 4.69
50 51 7.371936 GTTGTAGATGCTCTTATTAGACGGAT 58.628 38.462 0.00 0.00 0.00 4.18
51 52 7.526142 TGTAGATGCTCTTATTAGACGGATT 57.474 36.000 0.00 0.00 0.00 3.01
52 53 7.952671 TGTAGATGCTCTTATTAGACGGATTT 58.047 34.615 0.00 0.00 0.00 2.17
53 54 7.867909 TGTAGATGCTCTTATTAGACGGATTTG 59.132 37.037 0.00 0.00 0.00 2.32
54 55 6.821388 AGATGCTCTTATTAGACGGATTTGT 58.179 36.000 0.00 0.00 0.00 2.83
55 56 7.275920 AGATGCTCTTATTAGACGGATTTGTT 58.724 34.615 0.00 0.00 0.00 2.83
56 57 7.770897 AGATGCTCTTATTAGACGGATTTGTTT 59.229 33.333 0.00 0.00 0.00 2.83
57 58 7.072177 TGCTCTTATTAGACGGATTTGTTTG 57.928 36.000 0.00 0.00 0.00 2.93
58 59 6.653320 TGCTCTTATTAGACGGATTTGTTTGT 59.347 34.615 0.00 0.00 0.00 2.83
111 112 8.067784 TGTTTCAAACATCTTACGAAAAGCTAG 58.932 33.333 0.00 0.00 36.25 3.42
112 113 6.165659 TCAAACATCTTACGAAAAGCTAGC 57.834 37.500 6.62 6.62 0.00 3.42
116 117 6.452494 ACATCTTACGAAAAGCTAGCTAGA 57.548 37.500 25.15 15.33 0.00 2.43
175 180 1.577328 AAGGAAGATGCGCAACACCG 61.577 55.000 17.11 0.00 0.00 4.94
241 246 1.025812 CCGGCAGAGACGAGTTAGAT 58.974 55.000 0.00 0.00 35.20 1.98
249 254 4.079970 AGAGACGAGTTAGATGGTTGACA 58.920 43.478 0.00 0.00 0.00 3.58
272 277 0.723414 GTGGATGTAGTCGACGTCGA 59.277 55.000 34.97 34.97 44.01 4.20
316 321 1.602237 GGAAGGCCTTGGACGATGA 59.398 57.895 26.25 0.00 0.00 2.92
324 329 1.726791 CCTTGGACGATGACAAGTTCG 59.273 52.381 0.00 0.00 41.84 3.95
335 340 2.268298 GACAAGTTCGACTGTGTGTGT 58.732 47.619 0.00 0.00 0.00 3.72
351 356 0.172352 GTGTGGTTGTGGTTGTGGTG 59.828 55.000 0.00 0.00 0.00 4.17
400 415 1.749258 GGGAATGGAGGGACGTTGC 60.749 63.158 0.00 0.00 0.00 4.17
402 417 1.375523 GAATGGAGGGACGTTGCGT 60.376 57.895 0.00 0.00 45.10 5.24
405 420 4.681978 GGAGGGACGTTGCGTGCT 62.682 66.667 12.35 0.00 46.76 4.40
474 678 0.036388 GACGGAGCCTCATCCAACAA 60.036 55.000 0.00 0.00 39.53 2.83
557 829 9.139174 CCAATTGTAAGAATGGTAATTGACAAC 57.861 33.333 4.43 0.00 39.73 3.32
624 896 9.431887 CAGATTTCACCTTTGAATGAAAATGAT 57.568 29.630 3.73 0.00 45.34 2.45
629 901 8.634335 TCACCTTTGAATGAAAATGATCTGTA 57.366 30.769 0.00 0.00 0.00 2.74
640 912 8.565896 TGAAAATGATCTGTAAATGTAGCTGT 57.434 30.769 0.00 0.00 0.00 4.40
641 913 9.013229 TGAAAATGATCTGTAAATGTAGCTGTT 57.987 29.630 0.00 0.00 0.00 3.16
642 914 9.846248 GAAAATGATCTGTAAATGTAGCTGTTT 57.154 29.630 0.00 0.00 0.00 2.83
748 1020 2.597578 TACTGCCGGCCTATCTGATA 57.402 50.000 26.77 0.00 0.00 2.15
749 1021 1.944177 ACTGCCGGCCTATCTGATAT 58.056 50.000 26.77 0.00 0.00 1.63
750 1022 2.260822 ACTGCCGGCCTATCTGATATT 58.739 47.619 26.77 0.00 0.00 1.28
751 1023 2.234908 ACTGCCGGCCTATCTGATATTC 59.765 50.000 26.77 0.00 0.00 1.75
752 1024 2.499289 CTGCCGGCCTATCTGATATTCT 59.501 50.000 26.77 0.00 0.00 2.40
753 1025 2.234661 TGCCGGCCTATCTGATATTCTG 59.765 50.000 26.77 0.00 0.00 3.02
763 1035 7.310671 GCCTATCTGATATTCTGATGTACCCAA 60.311 40.741 0.00 0.00 36.07 4.12
770 1042 3.719268 TCTGATGTACCCAAGCATTGT 57.281 42.857 0.00 0.00 46.99 2.71
795 1096 4.321304 CCCAGCCTCTCTTGTATACATACG 60.321 50.000 6.36 0.00 36.06 3.06
796 1097 4.519350 CCAGCCTCTCTTGTATACATACGA 59.481 45.833 6.36 3.44 36.06 3.43
797 1098 5.335269 CCAGCCTCTCTTGTATACATACGAG 60.335 48.000 6.36 12.46 43.23 4.18
798 1099 5.470437 CAGCCTCTCTTGTATACATACGAGA 59.530 44.000 20.02 20.02 46.42 4.04
799 1100 6.150307 CAGCCTCTCTTGTATACATACGAGAT 59.850 42.308 20.85 10.70 46.98 2.75
800 1101 7.334671 CAGCCTCTCTTGTATACATACGAGATA 59.665 40.741 20.85 10.53 46.98 1.98
801 1102 7.334921 AGCCTCTCTTGTATACATACGAGATAC 59.665 40.741 20.85 17.24 46.98 2.24
884 1187 3.503363 TGCACTCACAGATTTGGTTCATC 59.497 43.478 0.00 0.00 0.00 2.92
892 1195 6.016360 TCACAGATTTGGTTCATCGATTGTTT 60.016 34.615 0.00 0.00 0.00 2.83
1034 1340 4.819761 TCCTGATCGCTGCCGCAC 62.820 66.667 0.00 0.00 35.30 5.34
1036 1342 4.827087 CTGATCGCTGCCGCACCT 62.827 66.667 0.00 0.00 35.30 4.00
1263 1569 4.452733 GACTGCTTCGTCCGGGGG 62.453 72.222 0.00 0.00 0.00 5.40
1297 1603 2.678580 TCATCGACTCCACGGCCA 60.679 61.111 2.24 0.00 0.00 5.36
1298 1604 2.509336 CATCGACTCCACGGCCAC 60.509 66.667 2.24 0.00 0.00 5.01
1657 1963 1.548357 GCACTGCTCCTCCTTCCAGA 61.548 60.000 0.00 0.00 0.00 3.86
2019 2325 1.063912 CGACACAACTGAAGCAAGCAA 59.936 47.619 0.00 0.00 0.00 3.91
2031 2337 1.450531 GCAAGCAATGGATCCCCTCG 61.451 60.000 9.90 0.00 0.00 4.63
2034 2340 1.595382 GCAATGGATCCCCTCGTCG 60.595 63.158 9.90 0.00 0.00 5.12
2066 2372 7.265647 TCTGTCTCTGCTACATAACTGTATC 57.734 40.000 0.00 0.00 37.24 2.24
2126 2442 1.369091 CTGTGGCCGGCAATCTACAC 61.369 60.000 30.85 24.66 0.00 2.90
2130 2446 1.644786 GGCCGGCAATCTACACACAC 61.645 60.000 30.85 0.98 0.00 3.82
2152 2468 4.349930 ACTCTAGTTGAAAAAGGGCCTACA 59.650 41.667 6.41 2.21 0.00 2.74
2153 2469 5.163131 ACTCTAGTTGAAAAAGGGCCTACAA 60.163 40.000 6.41 8.82 0.00 2.41
2246 2565 8.151596 AGAAAGTTTAGAGTAAAAGAGAGGTGG 58.848 37.037 0.00 0.00 0.00 4.61
2270 2599 7.037873 TGGATGGTTGGTCTATTGTAAACTACT 60.038 37.037 0.00 0.00 0.00 2.57
2271 2600 7.494952 GGATGGTTGGTCTATTGTAAACTACTC 59.505 40.741 0.00 0.00 0.00 2.59
2272 2601 6.704310 TGGTTGGTCTATTGTAAACTACTCC 58.296 40.000 0.00 0.00 0.00 3.85
2273 2602 6.111382 GGTTGGTCTATTGTAAACTACTCCC 58.889 44.000 0.00 0.00 0.00 4.30
2274 2603 6.070366 GGTTGGTCTATTGTAAACTACTCCCT 60.070 42.308 0.00 0.00 0.00 4.20
2275 2604 6.786967 TGGTCTATTGTAAACTACTCCCTC 57.213 41.667 0.00 0.00 0.00 4.30
2276 2605 5.659971 TGGTCTATTGTAAACTACTCCCTCC 59.340 44.000 0.00 0.00 0.00 4.30
2278 2607 5.359292 GTCTATTGTAAACTACTCCCTCCGT 59.641 44.000 0.00 0.00 0.00 4.69
2279 2608 6.543831 GTCTATTGTAAACTACTCCCTCCGTA 59.456 42.308 0.00 0.00 0.00 4.02
2280 2609 7.067494 GTCTATTGTAAACTACTCCCTCCGTAA 59.933 40.741 0.00 0.00 0.00 3.18
2281 2610 6.610075 ATTGTAAACTACTCCCTCCGTAAA 57.390 37.500 0.00 0.00 0.00 2.01
2282 2611 5.649782 TGTAAACTACTCCCTCCGTAAAG 57.350 43.478 0.00 0.00 0.00 1.85
2283 2612 3.606595 AAACTACTCCCTCCGTAAAGC 57.393 47.619 0.00 0.00 0.00 3.51
2284 2613 2.226962 ACTACTCCCTCCGTAAAGCA 57.773 50.000 0.00 0.00 0.00 3.91
2285 2614 2.100989 ACTACTCCCTCCGTAAAGCAG 58.899 52.381 0.00 0.00 0.00 4.24
2286 2615 2.100989 CTACTCCCTCCGTAAAGCAGT 58.899 52.381 0.00 0.00 0.00 4.40
2287 2616 0.608640 ACTCCCTCCGTAAAGCAGTG 59.391 55.000 0.00 0.00 0.00 3.66
2288 2617 0.895530 CTCCCTCCGTAAAGCAGTGA 59.104 55.000 0.00 0.00 0.00 3.41
2289 2618 1.275291 CTCCCTCCGTAAAGCAGTGAA 59.725 52.381 0.00 0.00 0.00 3.18
2290 2619 1.906574 TCCCTCCGTAAAGCAGTGAAT 59.093 47.619 0.00 0.00 0.00 2.57
2291 2620 3.101437 TCCCTCCGTAAAGCAGTGAATA 58.899 45.455 0.00 0.00 0.00 1.75
2292 2621 3.132289 TCCCTCCGTAAAGCAGTGAATAG 59.868 47.826 0.00 0.00 0.00 1.73
2293 2622 3.132289 CCCTCCGTAAAGCAGTGAATAGA 59.868 47.826 0.00 0.00 0.00 1.98
2294 2623 4.113354 CCTCCGTAAAGCAGTGAATAGAC 58.887 47.826 0.00 0.00 0.00 2.59
2295 2624 4.142138 CCTCCGTAAAGCAGTGAATAGACT 60.142 45.833 0.00 0.00 0.00 3.24
2296 2625 4.995124 TCCGTAAAGCAGTGAATAGACTC 58.005 43.478 0.00 0.00 0.00 3.36
2297 2626 4.705507 TCCGTAAAGCAGTGAATAGACTCT 59.294 41.667 0.00 0.00 0.00 3.24
2298 2627 4.800993 CCGTAAAGCAGTGAATAGACTCTG 59.199 45.833 0.00 0.00 35.39 3.35
2299 2628 5.393135 CCGTAAAGCAGTGAATAGACTCTGA 60.393 44.000 0.00 0.00 34.58 3.27
2300 2629 6.269315 CGTAAAGCAGTGAATAGACTCTGAT 58.731 40.000 0.00 0.00 34.58 2.90
2301 2630 6.416455 CGTAAAGCAGTGAATAGACTCTGATC 59.584 42.308 0.00 0.00 34.58 2.92
2302 2631 5.929058 AAGCAGTGAATAGACTCTGATCA 57.071 39.130 0.00 0.00 34.58 2.92
2303 2632 6.482898 AAGCAGTGAATAGACTCTGATCAT 57.517 37.500 0.00 0.00 34.58 2.45
2323 2652 9.056005 TGATCATAAAGTGCAAGACCATATTAC 57.944 33.333 0.00 0.00 0.00 1.89
2330 2659 4.275936 GTGCAAGACCATATTACCCACATC 59.724 45.833 0.00 0.00 0.00 3.06
2335 2664 5.165652 AGACCATATTACCCACATCCAGAT 58.834 41.667 0.00 0.00 0.00 2.90
2341 2670 8.260818 CCATATTACCCACATCCAGATTAGTAG 58.739 40.741 0.00 0.00 0.00 2.57
2549 2882 7.943079 TTGCAACATGGATGATATATTAGGG 57.057 36.000 0.00 0.00 0.00 3.53
2561 2894 9.574516 GATGATATATTAGGGGTGTGACTTTTT 57.425 33.333 0.00 0.00 0.00 1.94
2572 2905 5.977129 GGGTGTGACTTTTTGACAACTAATG 59.023 40.000 0.00 0.00 0.00 1.90
2578 2911 7.913297 GTGACTTTTTGACAACTAATGCACTTA 59.087 33.333 0.00 0.00 0.00 2.24
2579 2912 8.128582 TGACTTTTTGACAACTAATGCACTTAG 58.871 33.333 11.86 11.86 42.26 2.18
2617 2950 7.798596 ATGTTAATGATGTTCTGCCTTAGAG 57.201 36.000 0.00 0.00 36.61 2.43
2677 3010 1.302271 GTGGAGGGGAAACACGACC 60.302 63.158 0.00 0.00 40.46 4.79
2807 3144 5.803020 ACTTTGTTGTCTCAGTTTCAGTC 57.197 39.130 0.00 0.00 0.00 3.51
2814 3151 4.769688 TGTCTCAGTTTCAGTCACACATT 58.230 39.130 0.00 0.00 0.00 2.71
2822 3159 3.696281 TCAGTCACACATTTGCAACTG 57.304 42.857 14.64 14.64 38.81 3.16
2823 3160 2.121786 CAGTCACACATTTGCAACTGC 58.878 47.619 15.99 0.54 42.50 4.40
2834 3171 2.818350 GCAACTGCATTCACAAGGC 58.182 52.632 0.00 0.00 41.59 4.35
2836 3173 1.774639 CAACTGCATTCACAAGGCAC 58.225 50.000 0.00 0.00 44.03 5.01
2837 3174 1.067364 CAACTGCATTCACAAGGCACA 59.933 47.619 0.00 0.00 44.03 4.57
2838 3175 1.624336 ACTGCATTCACAAGGCACAT 58.376 45.000 0.00 0.00 44.03 3.21
2839 3176 2.794103 ACTGCATTCACAAGGCACATA 58.206 42.857 0.00 0.00 44.03 2.29
2840 3177 2.489329 ACTGCATTCACAAGGCACATAC 59.511 45.455 0.00 0.00 44.03 2.39
2841 3178 2.751259 CTGCATTCACAAGGCACATACT 59.249 45.455 0.00 0.00 44.03 2.12
2842 3179 2.749076 TGCATTCACAAGGCACATACTC 59.251 45.455 0.00 0.00 44.03 2.59
2843 3180 2.098117 GCATTCACAAGGCACATACTCC 59.902 50.000 0.00 0.00 38.24 3.85
2844 3181 2.489938 TTCACAAGGCACATACTCCC 57.510 50.000 0.00 0.00 0.00 4.30
2845 3182 1.656587 TCACAAGGCACATACTCCCT 58.343 50.000 0.00 0.00 0.00 4.20
2846 3183 1.555075 TCACAAGGCACATACTCCCTC 59.445 52.381 0.00 0.00 0.00 4.30
2847 3184 0.912486 ACAAGGCACATACTCCCTCC 59.088 55.000 0.00 0.00 0.00 4.30
2848 3185 0.179073 CAAGGCACATACTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
2849 3186 0.617820 AAGGCACATACTCCCTCCGT 60.618 55.000 0.00 0.00 0.00 4.69
2850 3187 1.043673 AGGCACATACTCCCTCCGTC 61.044 60.000 0.00 0.00 0.00 4.79
2851 3188 1.442148 GCACATACTCCCTCCGTCC 59.558 63.158 0.00 0.00 0.00 4.79
2852 3189 1.734137 CACATACTCCCTCCGTCCG 59.266 63.158 0.00 0.00 0.00 4.79
2853 3190 0.750546 CACATACTCCCTCCGTCCGA 60.751 60.000 0.00 0.00 0.00 4.55
2854 3191 0.033796 ACATACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
2855 3192 1.108776 CATACTCCCTCCGTCCGAAA 58.891 55.000 0.00 0.00 0.00 3.46
2856 3193 1.479323 CATACTCCCTCCGTCCGAAAA 59.521 52.381 0.00 0.00 0.00 2.29
2857 3194 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
2858 3195 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
2859 3196 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
2860 3197 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
2861 3198 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
2862 3199 1.338389 CCCTCCGTCCGAAAAAGCTTA 60.338 52.381 0.00 0.00 0.00 3.09
2863 3200 2.629051 CCTCCGTCCGAAAAAGCTTAT 58.371 47.619 0.00 0.00 0.00 1.73
2864 3201 2.608090 CCTCCGTCCGAAAAAGCTTATC 59.392 50.000 0.00 0.21 0.00 1.75
2865 3202 2.608090 CTCCGTCCGAAAAAGCTTATCC 59.392 50.000 0.00 0.00 0.00 2.59
2866 3203 1.669265 CCGTCCGAAAAAGCTTATCCC 59.331 52.381 0.00 0.00 0.00 3.85
2867 3204 2.629051 CGTCCGAAAAAGCTTATCCCT 58.371 47.619 0.00 0.00 0.00 4.20
2868 3205 3.007635 CGTCCGAAAAAGCTTATCCCTT 58.992 45.455 0.00 0.00 0.00 3.95
2869 3206 4.186159 CGTCCGAAAAAGCTTATCCCTTA 58.814 43.478 0.00 0.00 0.00 2.69
2870 3207 4.632688 CGTCCGAAAAAGCTTATCCCTTAA 59.367 41.667 0.00 0.00 0.00 1.85
2871 3208 5.122711 CGTCCGAAAAAGCTTATCCCTTAAA 59.877 40.000 0.00 0.00 0.00 1.52
2872 3209 6.183360 CGTCCGAAAAAGCTTATCCCTTAAAT 60.183 38.462 0.00 0.00 0.00 1.40
2873 3210 6.972901 GTCCGAAAAAGCTTATCCCTTAAATG 59.027 38.462 0.00 0.00 0.00 2.32
2874 3211 6.096282 TCCGAAAAAGCTTATCCCTTAAATGG 59.904 38.462 0.00 0.00 0.00 3.16
2875 3212 6.096282 CCGAAAAAGCTTATCCCTTAAATGGA 59.904 38.462 0.00 0.00 36.05 3.41
2876 3213 7.201911 CCGAAAAAGCTTATCCCTTAAATGGAT 60.202 37.037 0.00 10.24 44.71 3.41
2877 3214 7.649306 CGAAAAAGCTTATCCCTTAAATGGATG 59.351 37.037 13.87 2.88 42.57 3.51
2878 3215 7.978099 AAAAGCTTATCCCTTAAATGGATGT 57.022 32.000 13.87 0.00 42.57 3.06
2879 3216 9.487442 AAAAAGCTTATCCCTTAAATGGATGTA 57.513 29.630 13.87 4.32 42.57 2.29
2880 3217 9.660544 AAAAGCTTATCCCTTAAATGGATGTAT 57.339 29.630 13.87 0.00 42.57 2.29
2881 3218 8.870075 AAGCTTATCCCTTAAATGGATGTATC 57.130 34.615 13.87 4.00 42.57 2.24
2882 3219 8.224620 AGCTTATCCCTTAAATGGATGTATCT 57.775 34.615 13.87 5.61 42.57 1.98
2883 3220 9.338968 AGCTTATCCCTTAAATGGATGTATCTA 57.661 33.333 13.87 0.00 42.57 1.98
2884 3221 9.606631 GCTTATCCCTTAAATGGATGTATCTAG 57.393 37.037 13.87 0.00 42.57 2.43
2885 3222 9.606631 CTTATCCCTTAAATGGATGTATCTAGC 57.393 37.037 13.87 0.00 42.57 3.42
2886 3223 7.574021 ATCCCTTAAATGGATGTATCTAGCA 57.426 36.000 5.58 0.00 41.10 3.49
2887 3224 7.574021 TCCCTTAAATGGATGTATCTAGCAT 57.426 36.000 0.00 0.00 0.00 3.79
2888 3225 7.624549 TCCCTTAAATGGATGTATCTAGCATC 58.375 38.462 1.37 1.37 41.30 3.91
2889 3226 7.237471 TCCCTTAAATGGATGTATCTAGCATCA 59.763 37.037 9.99 0.00 43.17 3.07
2890 3227 7.884877 CCCTTAAATGGATGTATCTAGCATCAA 59.115 37.037 9.99 0.98 43.17 2.57
2891 3228 8.944029 CCTTAAATGGATGTATCTAGCATCAAG 58.056 37.037 9.99 5.54 43.17 3.02
2892 3229 9.499479 CTTAAATGGATGTATCTAGCATCAAGT 57.501 33.333 9.99 0.00 43.17 3.16
2893 3230 9.851686 TTAAATGGATGTATCTAGCATCAAGTT 57.148 29.630 9.99 7.36 43.17 2.66
2895 3232 9.499479 AAATGGATGTATCTAGCATCAAGTTAG 57.501 33.333 9.99 0.00 43.17 2.34
2896 3233 7.603180 TGGATGTATCTAGCATCAAGTTAGT 57.397 36.000 9.99 0.00 43.17 2.24
2897 3234 7.436933 TGGATGTATCTAGCATCAAGTTAGTG 58.563 38.462 9.99 0.00 43.17 2.74
2898 3235 6.367422 GGATGTATCTAGCATCAAGTTAGTGC 59.633 42.308 9.99 4.02 43.17 4.40
2900 3237 7.582667 TGTATCTAGCATCAAGTTAGTGCTA 57.417 36.000 16.22 16.22 46.54 3.49
2906 3243 6.471233 AGCATCAAGTTAGTGCTAGATACA 57.529 37.500 11.30 0.00 46.54 2.29
2907 3244 7.060383 AGCATCAAGTTAGTGCTAGATACAT 57.940 36.000 11.30 0.00 46.54 2.29
2908 3245 7.151308 AGCATCAAGTTAGTGCTAGATACATC 58.849 38.462 11.30 0.00 46.54 3.06
2909 3246 6.367422 GCATCAAGTTAGTGCTAGATACATCC 59.633 42.308 0.00 0.00 36.02 3.51
2910 3247 7.436933 CATCAAGTTAGTGCTAGATACATCCA 58.563 38.462 0.00 0.00 0.00 3.41
2911 3248 7.603180 TCAAGTTAGTGCTAGATACATCCAT 57.397 36.000 0.00 0.00 0.00 3.41
2912 3249 8.023021 TCAAGTTAGTGCTAGATACATCCATT 57.977 34.615 0.00 0.00 0.00 3.16
2913 3250 8.486210 TCAAGTTAGTGCTAGATACATCCATTT 58.514 33.333 0.00 0.00 0.00 2.32
2914 3251 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
2915 3252 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
2916 3253 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
2917 3254 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
2918 3255 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
2919 3256 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
2920 3257 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
2921 3258 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
2922 3259 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
2923 3260 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
2924 3261 3.814504 ACATCCATTTGAGGGACAAGT 57.185 42.857 0.00 0.00 39.77 3.16
2925 3262 4.118168 ACATCCATTTGAGGGACAAGTT 57.882 40.909 0.00 0.00 39.77 2.66
2926 3263 4.482990 ACATCCATTTGAGGGACAAGTTT 58.517 39.130 0.00 0.00 39.77 2.66
2927 3264 4.281688 ACATCCATTTGAGGGACAAGTTTG 59.718 41.667 0.00 0.00 39.77 2.93
2928 3265 3.230134 TCCATTTGAGGGACAAGTTTGG 58.770 45.455 0.00 0.00 39.77 3.28
2929 3266 2.299867 CCATTTGAGGGACAAGTTTGGG 59.700 50.000 0.00 0.00 39.77 4.12
2930 3267 3.230134 CATTTGAGGGACAAGTTTGGGA 58.770 45.455 0.00 0.00 39.77 4.37
2931 3268 2.358322 TTGAGGGACAAGTTTGGGAC 57.642 50.000 0.00 0.00 34.20 4.46
2932 3269 1.217916 TGAGGGACAAGTTTGGGACA 58.782 50.000 0.00 0.00 0.00 4.02
2933 3270 2.024846 TTGAGGGACAAGTTTGGGACAA 60.025 45.455 0.00 0.00 37.48 3.18
2934 3271 3.939454 TTGAGGGACAAGTTTGGGACAAG 60.939 47.826 0.00 0.00 37.48 3.16
2935 3272 6.408971 TTGAGGGACAAGTTTGGGACAAGT 62.409 45.833 0.00 0.00 37.48 3.16
2936 3273 7.809906 TTGAGGGACAAGTTTGGGACAAGTT 62.810 44.000 0.00 0.00 37.48 2.66
2956 3293 2.730550 TTTTCGGACGGAGGAAGTAC 57.269 50.000 0.00 0.00 0.00 2.73
2957 3294 0.890683 TTTCGGACGGAGGAAGTACC 59.109 55.000 0.00 0.00 39.35 3.34
2973 3310 7.166691 GGAAGTACCTCAAACTACTATGACA 57.833 40.000 0.00 0.00 35.41 3.58
2974 3311 7.609056 GGAAGTACCTCAAACTACTATGACAA 58.391 38.462 0.00 0.00 35.41 3.18
2975 3312 8.258708 GGAAGTACCTCAAACTACTATGACAAT 58.741 37.037 0.00 0.00 35.41 2.71
2976 3313 9.303537 GAAGTACCTCAAACTACTATGACAATC 57.696 37.037 0.00 0.00 0.00 2.67
2977 3314 7.481642 AGTACCTCAAACTACTATGACAATCG 58.518 38.462 0.00 0.00 0.00 3.34
2978 3315 6.282199 ACCTCAAACTACTATGACAATCGT 57.718 37.500 0.00 0.00 0.00 3.73
2979 3316 6.698380 ACCTCAAACTACTATGACAATCGTT 58.302 36.000 0.00 0.00 0.00 3.85
2980 3317 6.812160 ACCTCAAACTACTATGACAATCGTTC 59.188 38.462 0.00 0.00 0.00 3.95
2981 3318 6.811665 CCTCAAACTACTATGACAATCGTTCA 59.188 38.462 0.00 0.00 0.00 3.18
2982 3319 7.492669 CCTCAAACTACTATGACAATCGTTCAT 59.507 37.037 0.00 0.00 0.00 2.57
2983 3320 8.185003 TCAAACTACTATGACAATCGTTCATG 57.815 34.615 0.00 0.00 0.00 3.07
2984 3321 8.032451 TCAAACTACTATGACAATCGTTCATGA 58.968 33.333 0.00 0.00 0.00 3.07
2985 3322 7.757097 AACTACTATGACAATCGTTCATGAC 57.243 36.000 0.00 0.00 0.00 3.06
2986 3323 6.863275 ACTACTATGACAATCGTTCATGACA 58.137 36.000 0.00 0.00 0.00 3.58
2987 3324 6.752351 ACTACTATGACAATCGTTCATGACAC 59.248 38.462 0.00 0.00 0.00 3.67
2988 3325 5.724328 ACTATGACAATCGTTCATGACACT 58.276 37.500 0.00 0.00 0.00 3.55
2989 3326 4.934075 ATGACAATCGTTCATGACACTG 57.066 40.909 0.00 0.00 0.00 3.66
2990 3327 2.480037 TGACAATCGTTCATGACACTGC 59.520 45.455 0.00 0.00 0.00 4.40
2991 3328 2.738846 GACAATCGTTCATGACACTGCT 59.261 45.455 0.00 0.00 0.00 4.24
2992 3329 2.738846 ACAATCGTTCATGACACTGCTC 59.261 45.455 0.00 0.00 0.00 4.26
2993 3330 2.998670 CAATCGTTCATGACACTGCTCT 59.001 45.455 0.00 0.00 0.00 4.09
2994 3331 4.176271 CAATCGTTCATGACACTGCTCTA 58.824 43.478 0.00 0.00 0.00 2.43
2995 3332 3.217599 TCGTTCATGACACTGCTCTAC 57.782 47.619 0.00 0.00 0.00 2.59
2996 3333 2.556622 TCGTTCATGACACTGCTCTACA 59.443 45.455 0.00 0.00 0.00 2.74
3004 3341 2.103143 CTGCTCTACAGGCGACCG 59.897 66.667 0.00 0.00 43.19 4.79
3005 3342 2.360726 TGCTCTACAGGCGACCGA 60.361 61.111 0.00 0.00 0.00 4.69
3006 3343 2.329678 CTGCTCTACAGGCGACCGAG 62.330 65.000 0.00 0.00 43.19 4.63
3007 3344 3.111939 CTCTACAGGCGACCGAGG 58.888 66.667 0.00 0.00 0.00 4.63
3008 3345 1.749638 CTCTACAGGCGACCGAGGT 60.750 63.158 0.00 0.00 0.00 3.85
3009 3346 0.463295 CTCTACAGGCGACCGAGGTA 60.463 60.000 0.00 0.00 0.00 3.08
3010 3347 0.035152 TCTACAGGCGACCGAGGTAA 60.035 55.000 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.320541 CGGATATATCTCATCCAGCCCTC 59.679 52.174 12.42 0.00 41.87 4.30
3 4 3.303938 CGGATATATCTCATCCAGCCCT 58.696 50.000 12.42 0.00 41.87 5.19
5 6 3.034635 ACCGGATATATCTCATCCAGCC 58.965 50.000 9.46 0.00 41.87 4.85
6 7 4.081420 ACAACCGGATATATCTCATCCAGC 60.081 45.833 9.46 0.00 41.87 4.85
7 8 5.667539 ACAACCGGATATATCTCATCCAG 57.332 43.478 9.46 0.00 41.87 3.86
8 9 6.490492 TCTACAACCGGATATATCTCATCCA 58.510 40.000 9.46 0.00 41.87 3.41
9 10 7.429633 CATCTACAACCGGATATATCTCATCC 58.570 42.308 9.46 0.00 38.92 3.51
10 11 6.920758 GCATCTACAACCGGATATATCTCATC 59.079 42.308 9.46 0.00 0.00 2.92
11 12 6.609212 AGCATCTACAACCGGATATATCTCAT 59.391 38.462 9.46 0.00 0.00 2.90
12 13 5.952347 AGCATCTACAACCGGATATATCTCA 59.048 40.000 9.46 0.00 0.00 3.27
13 14 6.458232 AGCATCTACAACCGGATATATCTC 57.542 41.667 9.46 2.44 0.00 2.75
14 15 6.458232 GAGCATCTACAACCGGATATATCT 57.542 41.667 9.46 0.00 0.00 1.98
31 32 7.484035 AACAAATCCGTCTAATAAGAGCATC 57.516 36.000 0.00 0.00 30.45 3.91
32 33 7.336931 ACAAACAAATCCGTCTAATAAGAGCAT 59.663 33.333 0.00 0.00 30.45 3.79
33 34 6.653320 ACAAACAAATCCGTCTAATAAGAGCA 59.347 34.615 0.00 0.00 30.45 4.26
34 35 6.961554 CACAAACAAATCCGTCTAATAAGAGC 59.038 38.462 0.00 0.00 30.45 4.09
35 36 8.029642 ACACAAACAAATCCGTCTAATAAGAG 57.970 34.615 0.00 0.00 30.45 2.85
36 37 7.972832 ACACAAACAAATCCGTCTAATAAGA 57.027 32.000 0.00 0.00 0.00 2.10
37 38 8.504005 AGAACACAAACAAATCCGTCTAATAAG 58.496 33.333 0.00 0.00 0.00 1.73
38 39 8.286800 CAGAACACAAACAAATCCGTCTAATAA 58.713 33.333 0.00 0.00 0.00 1.40
39 40 7.658167 TCAGAACACAAACAAATCCGTCTAATA 59.342 33.333 0.00 0.00 0.00 0.98
40 41 6.485313 TCAGAACACAAACAAATCCGTCTAAT 59.515 34.615 0.00 0.00 0.00 1.73
41 42 5.818336 TCAGAACACAAACAAATCCGTCTAA 59.182 36.000 0.00 0.00 0.00 2.10
42 43 5.361427 TCAGAACACAAACAAATCCGTCTA 58.639 37.500 0.00 0.00 0.00 2.59
43 44 4.196193 TCAGAACACAAACAAATCCGTCT 58.804 39.130 0.00 0.00 0.00 4.18
44 45 4.545823 TCAGAACACAAACAAATCCGTC 57.454 40.909 0.00 0.00 0.00 4.79
45 46 4.668289 GTTCAGAACACAAACAAATCCGT 58.332 39.130 8.54 0.00 0.00 4.69
46 47 3.723764 CGTTCAGAACACAAACAAATCCG 59.276 43.478 13.82 0.00 0.00 4.18
47 48 4.668289 ACGTTCAGAACACAAACAAATCC 58.332 39.130 13.82 0.00 0.00 3.01
48 49 7.149351 CGATTACGTTCAGAACACAAACAAATC 60.149 37.037 13.82 9.13 34.56 2.17
49 50 6.631238 CGATTACGTTCAGAACACAAACAAAT 59.369 34.615 13.82 2.24 34.56 2.32
50 51 5.960683 CGATTACGTTCAGAACACAAACAAA 59.039 36.000 13.82 0.00 34.56 2.83
51 52 5.494618 CGATTACGTTCAGAACACAAACAA 58.505 37.500 13.82 0.00 34.56 2.83
52 53 5.073192 CGATTACGTTCAGAACACAAACA 57.927 39.130 13.82 0.00 34.56 2.83
101 102 4.660105 ACTTACGTCTAGCTAGCTTTTCG 58.340 43.478 24.88 23.88 0.00 3.46
111 112 7.412672 CCCAATTCTTAACAACTTACGTCTAGC 60.413 40.741 0.00 0.00 0.00 3.42
112 113 7.816031 TCCCAATTCTTAACAACTTACGTCTAG 59.184 37.037 0.00 0.00 0.00 2.43
116 117 6.527423 TCTCCCAATTCTTAACAACTTACGT 58.473 36.000 0.00 0.00 0.00 3.57
241 246 0.843309 ACATCCACACCTGTCAACCA 59.157 50.000 0.00 0.00 0.00 3.67
249 254 0.809385 CGTCGACTACATCCACACCT 59.191 55.000 14.70 0.00 0.00 4.00
272 277 0.878961 GCGACGTTGACCTCCAGTTT 60.879 55.000 7.08 0.00 0.00 2.66
316 321 1.999735 CACACACACAGTCGAACTTGT 59.000 47.619 0.00 0.00 0.00 3.16
324 329 0.732571 CCACAACCACACACACAGTC 59.267 55.000 0.00 0.00 0.00 3.51
335 340 1.380515 CCCACCACAACCACAACCA 60.381 57.895 0.00 0.00 0.00 3.67
378 393 1.497161 ACGTCCCTCCATTCCCTTAG 58.503 55.000 0.00 0.00 0.00 2.18
380 395 0.328258 CAACGTCCCTCCATTCCCTT 59.672 55.000 0.00 0.00 0.00 3.95
381 396 1.991230 CAACGTCCCTCCATTCCCT 59.009 57.895 0.00 0.00 0.00 4.20
385 400 1.671054 CACGCAACGTCCCTCCATT 60.671 57.895 0.00 0.00 38.32 3.16
387 402 4.980805 GCACGCAACGTCCCTCCA 62.981 66.667 0.00 0.00 38.32 3.86
389 404 3.414700 CAGCACGCAACGTCCCTC 61.415 66.667 0.00 0.00 38.32 4.30
400 415 1.068753 CCTCTATCCCTGCAGCACG 59.931 63.158 8.66 0.00 0.00 5.34
402 417 0.762082 CCTCCTCTATCCCTGCAGCA 60.762 60.000 8.66 0.00 0.00 4.41
405 420 0.189574 CTCCCTCCTCTATCCCTGCA 59.810 60.000 0.00 0.00 0.00 4.41
414 618 1.290732 CCCTTCTCTTCTCCCTCCTCT 59.709 57.143 0.00 0.00 0.00 3.69
437 641 5.614308 TCCGTCATCTTATACCTCGAGTTA 58.386 41.667 12.31 0.90 0.00 2.24
474 678 1.599419 GCGCAAAGTCGATTTTGTGGT 60.599 47.619 33.74 2.96 44.59 4.16
557 829 0.861866 CACGACCGTGCTCACTATCG 60.862 60.000 9.69 16.12 39.39 2.92
568 840 0.179067 ACATTTGTCACCACGACCGT 60.179 50.000 0.00 0.00 44.71 4.83
653 925 2.482721 ACAGCTACATTTACAACCACGC 59.517 45.455 0.00 0.00 0.00 5.34
748 1020 4.603131 ACAATGCTTGGGTACATCAGAAT 58.397 39.130 0.00 0.00 34.12 2.40
749 1021 4.032960 ACAATGCTTGGGTACATCAGAA 57.967 40.909 0.00 0.00 34.12 3.02
750 1022 3.719268 ACAATGCTTGGGTACATCAGA 57.281 42.857 0.00 0.00 34.12 3.27
751 1023 3.627577 GGTACAATGCTTGGGTACATCAG 59.372 47.826 13.39 0.00 39.24 2.90
752 1024 3.616219 GGTACAATGCTTGGGTACATCA 58.384 45.455 13.39 0.00 39.24 3.07
753 1025 2.949644 GGGTACAATGCTTGGGTACATC 59.050 50.000 13.39 5.23 39.24 3.06
763 1035 0.543749 GAGAGGCTGGGTACAATGCT 59.456 55.000 0.00 0.00 0.00 3.79
770 1042 4.259933 TGTATACAAGAGAGGCTGGGTA 57.740 45.455 2.20 0.00 0.00 3.69
795 1096 3.767673 TGTGGTACTCCAAGTGGTATCTC 59.232 47.826 0.00 0.00 46.15 2.75
796 1097 3.769844 CTGTGGTACTCCAAGTGGTATCT 59.230 47.826 0.00 0.00 46.15 1.98
797 1098 3.679083 GCTGTGGTACTCCAAGTGGTATC 60.679 52.174 0.00 0.00 46.15 2.24
798 1099 2.236395 GCTGTGGTACTCCAAGTGGTAT 59.764 50.000 0.00 0.00 46.15 2.73
799 1100 1.621814 GCTGTGGTACTCCAAGTGGTA 59.378 52.381 0.00 0.00 46.15 3.25
800 1101 0.396811 GCTGTGGTACTCCAAGTGGT 59.603 55.000 0.00 0.00 46.15 4.16
801 1102 0.321653 GGCTGTGGTACTCCAAGTGG 60.322 60.000 0.00 0.00 46.15 4.00
884 1187 2.752354 TGGTGGCCTAATCAAACAATCG 59.248 45.455 3.32 0.00 0.00 3.34
892 1195 0.395586 GCATGGTGGTGGCCTAATCA 60.396 55.000 3.32 0.00 0.00 2.57
978 1284 0.894141 AGTGTGCTGGCTAGTCTGAG 59.106 55.000 5.28 0.00 0.00 3.35
1297 1603 2.030562 CTTCTCCGCCGTGTTGGT 59.969 61.111 0.00 0.00 41.21 3.67
1298 1604 2.742372 CCTTCTCCGCCGTGTTGG 60.742 66.667 0.00 0.00 42.50 3.77
2019 2325 1.833049 GGACGACGAGGGGATCCAT 60.833 63.158 15.23 0.26 34.83 3.41
2031 2337 0.034863 AGAGACAGAGGAGGGACGAC 60.035 60.000 0.00 0.00 0.00 4.34
2034 2340 0.324275 AGCAGAGACAGAGGAGGGAC 60.324 60.000 0.00 0.00 0.00 4.46
2066 2372 4.440103 CGTACCGGAATTAATCAGAACGAG 59.560 45.833 9.46 0.00 35.83 4.18
2100 2416 0.538516 TTGCCGGCCACAGTTACAAT 60.539 50.000 26.77 0.00 0.00 2.71
2101 2417 0.538516 ATTGCCGGCCACAGTTACAA 60.539 50.000 26.77 8.43 0.00 2.41
2102 2418 0.958382 GATTGCCGGCCACAGTTACA 60.958 55.000 26.77 0.00 0.00 2.41
2103 2419 0.676782 AGATTGCCGGCCACAGTTAC 60.677 55.000 26.77 6.66 0.00 2.50
2104 2420 0.906066 TAGATTGCCGGCCACAGTTA 59.094 50.000 26.77 6.17 0.00 2.24
2105 2421 0.676782 GTAGATTGCCGGCCACAGTT 60.677 55.000 26.77 7.26 0.00 3.16
2106 2422 1.078426 GTAGATTGCCGGCCACAGT 60.078 57.895 26.77 7.35 0.00 3.55
2107 2423 1.078497 TGTAGATTGCCGGCCACAG 60.078 57.895 26.77 0.00 0.00 3.66
2108 2424 1.376683 GTGTAGATTGCCGGCCACA 60.377 57.895 26.77 16.62 0.00 4.17
2109 2425 1.376683 TGTGTAGATTGCCGGCCAC 60.377 57.895 26.77 22.88 0.00 5.01
2110 2426 1.376683 GTGTGTAGATTGCCGGCCA 60.377 57.895 26.77 15.07 0.00 5.36
2126 2442 3.253432 GGCCCTTTTTCAACTAGAGTGTG 59.747 47.826 0.00 0.00 0.00 3.82
2130 2446 4.906618 TGTAGGCCCTTTTTCAACTAGAG 58.093 43.478 0.00 0.00 0.00 2.43
2152 2468 8.491045 TTGAAGGAAACAAGATATTCCCTTTT 57.509 30.769 0.00 0.00 45.08 2.27
2153 2469 8.491045 TTTGAAGGAAACAAGATATTCCCTTT 57.509 30.769 0.00 0.00 45.08 3.11
2228 2547 5.590818 ACCATCCACCTCTCTTTTACTCTA 58.409 41.667 0.00 0.00 0.00 2.43
2246 2565 7.494952 GGAGTAGTTTACAATAGACCAACCATC 59.505 40.741 0.00 0.00 0.00 3.51
2270 2599 1.344065 TTCACTGCTTTACGGAGGGA 58.656 50.000 0.00 0.00 42.25 4.20
2271 2600 2.403252 ATTCACTGCTTTACGGAGGG 57.597 50.000 0.00 0.00 35.50 4.30
2272 2601 4.113354 GTCTATTCACTGCTTTACGGAGG 58.887 47.826 0.00 0.00 35.02 4.30
2273 2602 5.000012 AGTCTATTCACTGCTTTACGGAG 58.000 43.478 0.00 0.00 37.07 4.63
2274 2603 4.705507 AGAGTCTATTCACTGCTTTACGGA 59.294 41.667 0.00 0.00 0.00 4.69
2275 2604 4.800993 CAGAGTCTATTCACTGCTTTACGG 59.199 45.833 0.00 0.00 0.00 4.02
2276 2605 5.641709 TCAGAGTCTATTCACTGCTTTACG 58.358 41.667 0.00 0.00 0.00 3.18
2278 2607 7.410120 TGATCAGAGTCTATTCACTGCTTTA 57.590 36.000 0.00 0.00 0.00 1.85
2279 2608 6.291648 TGATCAGAGTCTATTCACTGCTTT 57.708 37.500 0.00 0.00 0.00 3.51
2280 2609 5.929058 TGATCAGAGTCTATTCACTGCTT 57.071 39.130 0.00 0.00 0.00 3.91
2281 2610 7.594351 TTATGATCAGAGTCTATTCACTGCT 57.406 36.000 0.09 0.00 0.00 4.24
2282 2611 7.925483 ACTTTATGATCAGAGTCTATTCACTGC 59.075 37.037 0.09 0.00 0.00 4.40
2283 2612 9.247126 CACTTTATGATCAGAGTCTATTCACTG 57.753 37.037 0.09 0.00 0.00 3.66
2284 2613 7.925483 GCACTTTATGATCAGAGTCTATTCACT 59.075 37.037 0.09 1.27 0.00 3.41
2285 2614 7.708322 TGCACTTTATGATCAGAGTCTATTCAC 59.292 37.037 0.09 0.00 0.00 3.18
2286 2615 7.785033 TGCACTTTATGATCAGAGTCTATTCA 58.215 34.615 0.09 6.65 0.00 2.57
2287 2616 8.654230 TTGCACTTTATGATCAGAGTCTATTC 57.346 34.615 0.09 0.00 0.00 1.75
2288 2617 8.481314 TCTTGCACTTTATGATCAGAGTCTATT 58.519 33.333 0.09 0.00 0.00 1.73
2289 2618 7.925483 GTCTTGCACTTTATGATCAGAGTCTAT 59.075 37.037 0.09 0.00 0.00 1.98
2290 2619 7.261325 GTCTTGCACTTTATGATCAGAGTCTA 58.739 38.462 0.09 0.00 0.00 2.59
2291 2620 6.105333 GTCTTGCACTTTATGATCAGAGTCT 58.895 40.000 0.09 0.00 0.00 3.24
2292 2621 5.293079 GGTCTTGCACTTTATGATCAGAGTC 59.707 44.000 0.09 1.58 0.00 3.36
2293 2622 5.181748 GGTCTTGCACTTTATGATCAGAGT 58.818 41.667 0.09 2.47 0.00 3.24
2294 2623 5.181009 TGGTCTTGCACTTTATGATCAGAG 58.819 41.667 0.09 1.81 0.00 3.35
2295 2624 5.164620 TGGTCTTGCACTTTATGATCAGA 57.835 39.130 0.09 0.00 0.00 3.27
2296 2625 7.741027 ATATGGTCTTGCACTTTATGATCAG 57.259 36.000 0.09 0.00 0.00 2.90
2297 2626 9.056005 GTAATATGGTCTTGCACTTTATGATCA 57.944 33.333 0.00 0.00 0.00 2.92
2298 2627 8.507249 GGTAATATGGTCTTGCACTTTATGATC 58.493 37.037 0.00 0.00 0.00 2.92
2299 2628 7.448469 GGGTAATATGGTCTTGCACTTTATGAT 59.552 37.037 0.00 0.00 0.00 2.45
2300 2629 6.770785 GGGTAATATGGTCTTGCACTTTATGA 59.229 38.462 0.00 0.00 0.00 2.15
2301 2630 6.545666 TGGGTAATATGGTCTTGCACTTTATG 59.454 38.462 0.00 0.00 0.00 1.90
2302 2631 6.546034 GTGGGTAATATGGTCTTGCACTTTAT 59.454 38.462 0.00 0.00 0.00 1.40
2303 2632 5.883673 GTGGGTAATATGGTCTTGCACTTTA 59.116 40.000 0.00 0.00 0.00 1.85
2323 2652 4.202264 GGTGACTACTAATCTGGATGTGGG 60.202 50.000 0.00 0.00 0.00 4.61
2335 2664 7.277396 GCCCAAATAGTTATGGTGACTACTAA 58.723 38.462 0.00 0.00 34.79 2.24
2341 2670 3.626930 TGGCCCAAATAGTTATGGTGAC 58.373 45.455 0.00 0.00 34.79 3.67
2384 2716 5.741011 TCTTTACGGTATTTGCAAGAGGAT 58.259 37.500 0.00 0.00 0.00 3.24
2549 2882 5.458779 GCATTAGTTGTCAAAAAGTCACACC 59.541 40.000 0.00 0.00 0.00 4.16
2587 2920 7.844009 AGGCAGAACATCATTAACATTCAAAT 58.156 30.769 0.00 0.00 0.00 2.32
2591 2924 8.213518 TCTAAGGCAGAACATCATTAACATTC 57.786 34.615 0.00 0.00 0.00 2.67
2617 2950 4.039124 CCCTTGATTACCATAACATTGGCC 59.961 45.833 0.00 0.00 40.68 5.36
2693 3026 7.615365 ACAATACTCTTGGATTTATTTCAGGCA 59.385 33.333 0.00 0.00 0.00 4.75
2822 3159 2.098117 GGAGTATGTGCCTTGTGAATGC 59.902 50.000 0.00 0.00 0.00 3.56
2823 3160 2.684881 GGGAGTATGTGCCTTGTGAATG 59.315 50.000 0.00 0.00 32.55 2.67
2824 3161 3.004752 GGGAGTATGTGCCTTGTGAAT 57.995 47.619 0.00 0.00 32.55 2.57
2825 3162 2.489938 GGGAGTATGTGCCTTGTGAA 57.510 50.000 0.00 0.00 32.55 3.18
2832 3169 1.442148 GACGGAGGGAGTATGTGCC 59.558 63.158 0.00 0.00 36.73 5.01
2833 3170 1.442148 GGACGGAGGGAGTATGTGC 59.558 63.158 0.00 0.00 0.00 4.57
2834 3171 0.750546 TCGGACGGAGGGAGTATGTG 60.751 60.000 0.00 0.00 0.00 3.21
2835 3172 0.033796 TTCGGACGGAGGGAGTATGT 60.034 55.000 0.00 0.00 0.00 2.29
2836 3173 1.108776 TTTCGGACGGAGGGAGTATG 58.891 55.000 0.00 0.00 0.00 2.39
2837 3174 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
2838 3175 1.547372 CTTTTTCGGACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
2839 3176 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
2840 3177 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
2841 3178 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
2842 3179 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
2843 3180 2.088950 TAAGCTTTTTCGGACGGAGG 57.911 50.000 3.20 0.00 0.00 4.30
2844 3181 2.608090 GGATAAGCTTTTTCGGACGGAG 59.392 50.000 3.20 0.00 0.00 4.63
2845 3182 2.624636 GGATAAGCTTTTTCGGACGGA 58.375 47.619 3.20 0.00 0.00 4.69
2846 3183 1.669265 GGGATAAGCTTTTTCGGACGG 59.331 52.381 3.20 0.00 0.00 4.79
2847 3184 2.629051 AGGGATAAGCTTTTTCGGACG 58.371 47.619 3.20 0.00 0.00 4.79
2848 3185 6.505044 TTTAAGGGATAAGCTTTTTCGGAC 57.495 37.500 3.20 0.00 0.00 4.79
2849 3186 6.096282 CCATTTAAGGGATAAGCTTTTTCGGA 59.904 38.462 3.20 0.00 0.00 4.55
2850 3187 6.096282 TCCATTTAAGGGATAAGCTTTTTCGG 59.904 38.462 3.20 0.00 0.00 4.30
2851 3188 7.095695 TCCATTTAAGGGATAAGCTTTTTCG 57.904 36.000 3.20 0.00 0.00 3.46
2852 3189 8.478066 ACATCCATTTAAGGGATAAGCTTTTTC 58.522 33.333 10.96 2.10 43.24 2.29
2853 3190 8.379428 ACATCCATTTAAGGGATAAGCTTTTT 57.621 30.769 10.96 0.00 43.24 1.94
2854 3191 7.978099 ACATCCATTTAAGGGATAAGCTTTT 57.022 32.000 10.96 0.00 43.24 2.27
2855 3192 9.301897 GATACATCCATTTAAGGGATAAGCTTT 57.698 33.333 10.96 0.00 43.24 3.51
2856 3193 8.673251 AGATACATCCATTTAAGGGATAAGCTT 58.327 33.333 10.96 3.48 43.24 3.74
2857 3194 8.224620 AGATACATCCATTTAAGGGATAAGCT 57.775 34.615 10.96 7.79 43.24 3.74
2858 3195 9.606631 CTAGATACATCCATTTAAGGGATAAGC 57.393 37.037 10.96 5.69 43.24 3.09
2859 3196 9.606631 GCTAGATACATCCATTTAAGGGATAAG 57.393 37.037 10.96 2.85 43.24 1.73
2860 3197 9.111519 TGCTAGATACATCCATTTAAGGGATAA 57.888 33.333 10.96 3.33 43.24 1.75
2861 3198 8.679344 TGCTAGATACATCCATTTAAGGGATA 57.321 34.615 10.96 0.00 43.24 2.59
2862 3199 7.574021 TGCTAGATACATCCATTTAAGGGAT 57.426 36.000 5.21 5.21 45.98 3.85
2863 3200 7.237471 TGATGCTAGATACATCCATTTAAGGGA 59.763 37.037 0.00 0.00 42.68 4.20
2864 3201 7.397221 TGATGCTAGATACATCCATTTAAGGG 58.603 38.462 0.00 0.00 42.68 3.95
2865 3202 8.853077 TTGATGCTAGATACATCCATTTAAGG 57.147 34.615 0.00 0.00 42.68 2.69
2866 3203 9.499479 ACTTGATGCTAGATACATCCATTTAAG 57.501 33.333 0.00 0.03 42.68 1.85
2867 3204 9.851686 AACTTGATGCTAGATACATCCATTTAA 57.148 29.630 0.00 0.00 42.68 1.52
2869 3206 9.499479 CTAACTTGATGCTAGATACATCCATTT 57.501 33.333 0.00 0.00 42.68 2.32
2870 3207 8.654997 ACTAACTTGATGCTAGATACATCCATT 58.345 33.333 0.00 0.00 42.68 3.16
2871 3208 8.093307 CACTAACTTGATGCTAGATACATCCAT 58.907 37.037 0.00 0.00 42.68 3.41
2872 3209 7.436933 CACTAACTTGATGCTAGATACATCCA 58.563 38.462 0.00 0.00 42.68 3.41
2873 3210 6.367422 GCACTAACTTGATGCTAGATACATCC 59.633 42.308 0.00 0.00 42.68 3.51
2874 3211 7.344910 GCACTAACTTGATGCTAGATACATC 57.655 40.000 0.00 0.00 43.46 3.06
2884 3221 6.367422 GGATGTATCTAGCACTAACTTGATGC 59.633 42.308 0.00 0.00 39.74 3.91
2885 3222 7.436933 TGGATGTATCTAGCACTAACTTGATG 58.563 38.462 0.00 0.00 34.60 3.07
2886 3223 7.603180 TGGATGTATCTAGCACTAACTTGAT 57.397 36.000 0.00 0.00 36.37 2.57
2887 3224 7.603180 ATGGATGTATCTAGCACTAACTTGA 57.397 36.000 0.00 0.00 0.00 3.02
2888 3225 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
2889 3226 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
2890 3227 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
2891 3228 7.386299 CCTCAAATGGATGTATCTAGCACTAAC 59.614 40.741 0.00 0.00 0.00 2.34
2892 3229 7.445121 CCTCAAATGGATGTATCTAGCACTAA 58.555 38.462 0.00 0.00 0.00 2.24
2893 3230 6.014242 CCCTCAAATGGATGTATCTAGCACTA 60.014 42.308 0.00 0.00 0.00 2.74
2894 3231 5.221803 CCCTCAAATGGATGTATCTAGCACT 60.222 44.000 0.00 0.00 0.00 4.40
2895 3232 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
2896 3233 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
2897 3234 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
2898 3235 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
2899 3236 6.386927 ACTTGTCCCTCAAATGGATGTATCTA 59.613 38.462 0.00 0.00 35.48 1.98
2900 3237 5.192522 ACTTGTCCCTCAAATGGATGTATCT 59.807 40.000 0.00 0.00 35.48 1.98
2901 3238 5.440610 ACTTGTCCCTCAAATGGATGTATC 58.559 41.667 0.00 0.00 35.48 2.24
2902 3239 5.456921 ACTTGTCCCTCAAATGGATGTAT 57.543 39.130 0.00 0.00 35.48 2.29
2903 3240 4.927267 ACTTGTCCCTCAAATGGATGTA 57.073 40.909 0.00 0.00 35.48 2.29
2904 3241 3.814504 ACTTGTCCCTCAAATGGATGT 57.185 42.857 0.00 0.00 35.48 3.06
2905 3242 4.322198 CCAAACTTGTCCCTCAAATGGATG 60.322 45.833 0.00 0.00 36.92 3.51
2906 3243 3.834231 CCAAACTTGTCCCTCAAATGGAT 59.166 43.478 0.00 0.00 36.92 3.41
2907 3244 3.230134 CCAAACTTGTCCCTCAAATGGA 58.770 45.455 0.00 0.00 36.92 3.41
2908 3245 2.299867 CCCAAACTTGTCCCTCAAATGG 59.700 50.000 0.00 0.00 35.48 3.16
2909 3246 3.005791 GTCCCAAACTTGTCCCTCAAATG 59.994 47.826 0.00 0.00 35.48 2.32
2910 3247 3.230976 GTCCCAAACTTGTCCCTCAAAT 58.769 45.455 0.00 0.00 35.48 2.32
2911 3248 2.024846 TGTCCCAAACTTGTCCCTCAAA 60.025 45.455 0.00 0.00 35.48 2.69
2912 3249 1.566703 TGTCCCAAACTTGTCCCTCAA 59.433 47.619 0.00 0.00 34.61 3.02
2913 3250 1.217916 TGTCCCAAACTTGTCCCTCA 58.782 50.000 0.00 0.00 0.00 3.86
2914 3251 2.230660 CTTGTCCCAAACTTGTCCCTC 58.769 52.381 0.00 0.00 0.00 4.30
2915 3252 1.569072 ACTTGTCCCAAACTTGTCCCT 59.431 47.619 0.00 0.00 0.00 4.20
2916 3253 2.067365 ACTTGTCCCAAACTTGTCCC 57.933 50.000 0.00 0.00 0.00 4.46
2917 3254 4.465632 AAAACTTGTCCCAAACTTGTCC 57.534 40.909 0.00 0.00 0.00 4.02
2936 3273 2.289010 GGTACTTCCTCCGTCCGAAAAA 60.289 50.000 0.00 0.00 0.00 1.94
2937 3274 1.273327 GGTACTTCCTCCGTCCGAAAA 59.727 52.381 0.00 0.00 0.00 2.29
2938 3275 0.890683 GGTACTTCCTCCGTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
2939 3276 0.038744 AGGTACTTCCTCCGTCCGAA 59.961 55.000 0.00 0.00 44.42 4.30
2940 3277 1.687612 AGGTACTTCCTCCGTCCGA 59.312 57.895 0.00 0.00 44.42 4.55
2941 3278 4.333417 AGGTACTTCCTCCGTCCG 57.667 61.111 0.00 0.00 44.42 4.79
2949 3286 7.166691 TGTCATAGTAGTTTGAGGTACTTCC 57.833 40.000 2.10 0.00 41.55 3.46
2950 3287 9.303537 GATTGTCATAGTAGTTTGAGGTACTTC 57.696 37.037 0.00 0.00 41.55 3.01
2951 3288 7.974501 CGATTGTCATAGTAGTTTGAGGTACTT 59.025 37.037 0.00 0.00 41.55 2.24
2953 3290 7.256286 ACGATTGTCATAGTAGTTTGAGGTAC 58.744 38.462 0.00 0.00 0.00 3.34
2954 3291 7.400599 ACGATTGTCATAGTAGTTTGAGGTA 57.599 36.000 0.00 0.00 0.00 3.08
2955 3292 6.282199 ACGATTGTCATAGTAGTTTGAGGT 57.718 37.500 0.00 0.00 0.00 3.85
2956 3293 6.811665 TGAACGATTGTCATAGTAGTTTGAGG 59.188 38.462 0.00 0.00 0.00 3.86
2957 3294 7.812309 TGAACGATTGTCATAGTAGTTTGAG 57.188 36.000 0.00 0.00 0.00 3.02
2958 3295 8.032451 TCATGAACGATTGTCATAGTAGTTTGA 58.968 33.333 0.00 0.00 0.00 2.69
2959 3296 8.110612 GTCATGAACGATTGTCATAGTAGTTTG 58.889 37.037 0.00 0.00 0.00 2.93
2960 3297 7.817478 TGTCATGAACGATTGTCATAGTAGTTT 59.183 33.333 0.00 0.00 0.00 2.66
2961 3298 7.275779 GTGTCATGAACGATTGTCATAGTAGTT 59.724 37.037 0.00 0.00 0.00 2.24
2962 3299 6.752351 GTGTCATGAACGATTGTCATAGTAGT 59.248 38.462 0.00 0.00 0.00 2.73
2963 3300 6.975197 AGTGTCATGAACGATTGTCATAGTAG 59.025 38.462 0.00 0.00 0.00 2.57
2964 3301 6.751888 CAGTGTCATGAACGATTGTCATAGTA 59.248 38.462 0.00 0.00 0.00 1.82
2965 3302 5.578336 CAGTGTCATGAACGATTGTCATAGT 59.422 40.000 0.00 0.00 0.00 2.12
2966 3303 5.501413 GCAGTGTCATGAACGATTGTCATAG 60.501 44.000 0.00 0.00 0.00 2.23
2967 3304 4.329801 GCAGTGTCATGAACGATTGTCATA 59.670 41.667 0.00 0.00 0.00 2.15
2968 3305 3.125829 GCAGTGTCATGAACGATTGTCAT 59.874 43.478 0.00 0.00 0.00 3.06
2969 3306 2.480037 GCAGTGTCATGAACGATTGTCA 59.520 45.455 0.00 0.00 0.00 3.58
2970 3307 2.738846 AGCAGTGTCATGAACGATTGTC 59.261 45.455 0.00 0.00 0.00 3.18
2971 3308 2.738846 GAGCAGTGTCATGAACGATTGT 59.261 45.455 0.00 0.00 0.00 2.71
2972 3309 2.998670 AGAGCAGTGTCATGAACGATTG 59.001 45.455 0.00 0.00 0.00 2.67
2973 3310 3.325293 AGAGCAGTGTCATGAACGATT 57.675 42.857 0.00 0.00 0.00 3.34
2974 3311 3.193479 TGTAGAGCAGTGTCATGAACGAT 59.807 43.478 0.00 0.00 0.00 3.73
2975 3312 2.556622 TGTAGAGCAGTGTCATGAACGA 59.443 45.455 0.00 0.00 0.00 3.85
2976 3313 2.919859 CTGTAGAGCAGTGTCATGAACG 59.080 50.000 0.00 0.00 40.27 3.95
2977 3314 3.257393 CCTGTAGAGCAGTGTCATGAAC 58.743 50.000 0.00 0.00 43.55 3.18
2978 3315 2.354103 GCCTGTAGAGCAGTGTCATGAA 60.354 50.000 0.00 0.00 43.55 2.57
2979 3316 1.205655 GCCTGTAGAGCAGTGTCATGA 59.794 52.381 0.00 0.00 43.55 3.07
2980 3317 1.649664 GCCTGTAGAGCAGTGTCATG 58.350 55.000 0.00 0.00 43.55 3.07
2981 3318 0.174389 CGCCTGTAGAGCAGTGTCAT 59.826 55.000 0.00 0.00 43.55 3.06
2982 3319 0.893727 TCGCCTGTAGAGCAGTGTCA 60.894 55.000 0.00 0.00 43.55 3.58
2983 3320 0.456995 GTCGCCTGTAGAGCAGTGTC 60.457 60.000 0.00 0.00 43.55 3.67
2984 3321 1.587054 GTCGCCTGTAGAGCAGTGT 59.413 57.895 0.00 0.00 43.55 3.55
2985 3322 1.153745 GGTCGCCTGTAGAGCAGTG 60.154 63.158 0.00 0.00 43.55 3.66
2986 3323 2.701780 CGGTCGCCTGTAGAGCAGT 61.702 63.158 0.00 0.00 43.55 4.40
2987 3324 2.103143 CGGTCGCCTGTAGAGCAG 59.897 66.667 0.00 0.00 44.63 4.24
2988 3325 2.360726 TCGGTCGCCTGTAGAGCA 60.361 61.111 0.00 0.00 36.03 4.26
2989 3326 2.409651 CTCGGTCGCCTGTAGAGC 59.590 66.667 0.00 0.00 0.00 4.09
2990 3327 0.463295 TACCTCGGTCGCCTGTAGAG 60.463 60.000 0.00 0.00 0.00 2.43
2991 3328 0.035152 TTACCTCGGTCGCCTGTAGA 60.035 55.000 0.00 0.00 0.00 2.59
2992 3329 2.485677 TTACCTCGGTCGCCTGTAG 58.514 57.895 0.00 0.00 0.00 2.74
2993 3330 4.740922 TTACCTCGGTCGCCTGTA 57.259 55.556 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.