>input_sequence_63158
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-------------------------ATGGCGCCGCAGCTGCATCCTGATCGCTGCCGCACCTGGGCCTGGCCCTGGCCAC
GGGCGCCGCTCGGCTCAGTGCTTCTAGCGCTAGCTATAGTGAGCCTGGGCGGCGGCGGCGGCGATGCCCTGAGCCTGGAC
CACTACCGGCAGAGCTGCCCGAGGGCCGAGGCGGCCGTGGCCGCGGCTGTCAGGCAGGCCGTGGCCAAGGACCGCACCGT
GCCGGCCGGCCTGCTCCGCCTGCATTTCCACGACTGCTTCGTCCGGGGGTGCGACGCCTCCGTCCTCATCGACTCCACGG
CCACCAACACGGCGGAGAAGGACGGTCCGCCCAACGCCTCGCTGCACGCCTTCTTCGTCATCGACAACGCCAAGCAGGCC
GTGGAGGCCATGTGCCCGGGCGTCGTCTCCTGCGCCGACATCCTCGCGCTCGCCGCCAGGGACGCCGTCGCGCTCTCCGG
CGGCCCGTCCTGGTCGCCGCTGCTGGGGCGCGGGGACGGACGGGTGTCGCTGGCCAGCGACACCACCTCGGCGCTGCCGG
GGCCCGGGGCCAGCTTCGACCAGCTCAGGCAGGCGTTCCACGCGCTGGGGATGTCGGTCAAGGACCTGGTGGTGCTCTCC
GGCGGCCACACGCTGGGGTTCGCGCACTGCTCCTCCTTCCAGAGCCGCATCCACGGCTTCCGGCCCGGCGCCGACGTGGA
CCCGGCGCTGAACCCGTCCTTCGCGGCCGCGCTGCGCAGGGCGTGCCCGGCCAACAACACGGCCAGGGGCGCCGGGTCGG
GGATGGACCCCACGTCCGCCACCTTCGACAACGCCTACTACCGGATGCTGCAGAGCGGGCGCGGGCTGCTGTCCTCCGAC
GAGGTGCTGCTGACGCACCCCAAGACGCGGCGGTTCGTGGCGCTGTACGCGGCGCGGCAGGACGCCTTCTTCAGGGCGTT
CGTGAGCTCCATGCTGAGGATGAGCGCGCTCAACCAGCCCGGCGAGGTCCGAGCAAACTGCCGGCGACACAACTGA----
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>chr2B_1_TraesCS2B01G489800
TTGAGGGCTGGATGAGATATATCCGGTTGTAGATGCTCTTATTAGACGGATTTGTTTGTGTTCTGAACGTAATCGTTACA
TTGTATGTTTCAAACATCTTACGAAAAGCTAGCTAGAC----GTAAGTTGTTAAGAATTGGGAGAGTCAATTCAGGGGAG
AAGGAAGATGCGCAACACCGGGCTGCCGCTGGCGCCGGCAAGGCCTCGACCAGTAACGAGTCATAGCCGGCAGAGACGAG
TTAGATGGTTGACAGGTGTGGATGTAGTCGACGTCGAAACTGGAGGTCAACGTCGCTTAGAGGGAAGGCCTTGGACGATG
ACAAGTTCGACTGTGTGTGTGGTTGTGGTTGTGGTGGGAGGGTGGTGGTGGGCGGC----------GGGGGGCTAAGGGA
ATGGAGGGACGTTGCGTGCTG-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CAGG-GATAGAGGAGGGAGAAGAGAAGGGAC
TAACTCGAGGTATAAGATGACGGAGCCTCATCCAACAA--CCACAAAATCGACTTTGCGCAATTCAATTTTCAGGCG---
---------------------------------------------------------------ACTTATTTGTAGCCAGC
CCCCAATTGTAAGAATGGTAATTGACAACGATAGTGAGCACGGTCGTGGTGACAAATGTAAAAATCCTTCAGATTTCACC
TTTGAATGAAAATGATCTGTAAATGTAGCTGTTTTTTTTTTTTTGCGTGGTTGTAAATGTAGCTGTTGCAACAGAGGGTT
GTGCCTTTGACTACTGTTATGTACCCACGCATTGTGTCCATACTGCCGGCCTATCTGATATTCTGATGTACCCAAGCATT
GTA--------------CCCAGCCTCTCTTGTATACA---------------TACGAGATACCACTTGGAGTACCA--CA
GCCCAGATAGATAGCTTGGCTGGGCATACATCACATGCATGCGTTGCACTCACAGATTTGGTTCATCGATTGTTTGATTA
GGCCACCACCATGCGGCGGCGATCGGATATATCCTCCTAGCTAGCTCACCCTCTCTGCCAGACACATGCAGCAGC---AG
CTGCTCAGACTAGCCAGCACACTTAATGGCGCCGCAGCTGCATCCTGATCGCTGCCGCACCTGGGCCTGGCCCTGGCCAC
GGGCGCCGCTCGGCTCAGTGCTTCTAGCGCTAGCTATAGTGAGCCTGGGCGGCGGCGGCGGCGATGCCCTGAGCCTGGAC
CACTACCGGCAGAGCTGCCCGAGGGCCGAGGCGGCCGTGGCCGCGGCTGTCAGGCAGGCCGTGGCCAAGGACCGCACCGT
GCCGGCCGGCCTGCTCCGCCTGCATTTCCACGACTGCTTCGTCCGGGGGTGCGACGCCTCCGTCCTCATCGACTCCACGG
CCACCAACACGGCGGAGAAGGACGGTCCGCCCAACGCCTCGCTGCACGCCTTCTTCGTCATCGACAACGCCAAGCAGGCC
GTGGAGGCCATGTGCCCGGGCGTCGTCTCCTGCGCCGACATCCTCGCGCTCGCCGCCAGGGACGCCGTCGCGCTCTCCGG
CGGCCCGTCCTGGTCGCCGCTGCTGGGGCGCGGGGACGGACGGGTGTCGCTGGCCAGCGACACCACCTCGGCGCTGCCGG
GGCCCGGGGCCAGCTTCGACCAGCTCAGGCAGGCGTTCCACGCGCTGGGGATGTCGGTCAAGGACCTGGTGGTGCTCTCC
GGCGGCCACACGCTGGGGTTCGCGCACTGCTCCTCCTTCCAGAGCCGCATCCACGGCTTCCGGCCCGGCGCCGACGTGGA
CCCGGCGCTGAACCCGTCCTTCGCGGCCGCGCTGCGCAGGGCGTGCCCGGCCAACAACACGGCCAGGGGCGCCGGGTCGG
GGATGGACCCCACGTCCGCCACCTTCGACAACGCCTACTACCGGATGCTGCAGAGCGGGCGCGGGCTGCTGTCCTCCGAC
GAGGTGCTGCTGACGCACCCCAAGACGCGGCGGTTCGTGGCGCTGTACGCGGCGCGGCAGGACGCCTTCTTCAGGGCGTT
CGTGAGCTCCATGCTGAGGATGAGCGCGCTCAACCAGCCCGGCGAGGTCCGAGCAAACTGCCGGCGACACAACTGAAGCA
AGCAATGGATCCCCTCGTCGTCCCTCCTCTGTCTCTGCTACATAACTGTATCTCGTTCTGATTAATTCCGGTACGTAGT-
---------AACTGTATTGTAACTGTGGCCGGCAATCTACACACACTCTAGTTGAAAAAGGGCCTACAAAAGGGAATATC
TTGTTTCCTTCAAATAATACTTCTACACATTTTTCACAAGCTTA---TATTTTTCTCAAGAAAGTTTAGAGTAAAAGAGA
GGTGG----------ATGGTTGGTCTATTGTAAACTACTCCCTCCGTAAAGCAGTGAATAGACTCTGATCATAAAGTGCA
AGACCATATTACCCACATCCAGATTAGTAG-TCACCATAACTATTTGGGCCATAAGATTCAGAATGAGTT--TTTATCCT
CTTGCAAATACCGT-AAAGATGCCAAATATTTCTCTATAATTCTAGGTTGTACCCTTGGTGTTAGCCATGAGAAACAATT
GACTTCAATTATGAGGTGAGTAAACATGCCGAACACGGTGAATTTTTTCCTAGAGTTTTGCAACATGGATGATATATTAG
GGGTGTGACTTTTTGACAACTAATGCACTTAGTGTTTTTATTTGAATGTTAATGATGTTCTGCCTTAGAGGCCAATGTTA
TGGTAATCAAGGGAAGGCCATGGTTATGACAGTGGAGGGGAAACACGACCGCGTTCAAAAGCGACTGCCTGAAAT-AAAT
CCAAGAGTATTGTA---CATGCCAAGTGTGTGCCACAGTTTGAATCTTACATTCTATGATATGGCAAAATCTTGTGGCAA
AACTTTGTTGTCTCAGTTTCAGTCACACATTTGCAACTGCATTCACAAGGCACATACTCCCTCCGTCCGAAAAAGCTTAT
CCCTTAAATGGATGTATCTAGCATCAAGTTAGTGCTAGATACATCCATTTGAGGGACAAGTTTGGGACAAGTTTTTTCGG
ACGGAGGAAGTACCTCAAACTACTATGACAATCGTTCATGACACTGCTCTACAGGCGACCGAGGTAA
>chr2D_55
TTTGGT-----------------------------------------------------GTTCTGAACGTAATCGCTACA
TTGTATGTTTCAAACATCTTATGAAAAGCTAATTAGCCACAGGTAAGTTGTTTAGAATTGGGAGAGTCAATTCGGGGGAG
AAGGAAGATGCGCAACACCCGGCTGCCGGTGGCGCCGGCATGGCCTCGGCCAGTAACGAGTCATAGCCGGCAGAGACGAG
TTAGAAGGTTGACGGGTGTGGATGTAGTCGACATCGGAACTGGAGGTCAACGGCGCTTAGAGGGAAGGCCTTGGACGATG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCAGGCTGTCAGGCGGTGGAGGAGGGAGAAGAGAAGGGAC
CAACTCGAGGTATAAGATGACGGAGCCTCATCCAACAGCCCCACAAAATCGACTTTGCGCAATTCAATTTTCAGGCG---
---------------------------------------------------------------ACTTATTTGTGGTCAGC
CCCGTACTGTAAGAATGGCAATTGACAATGATAGTGAGCGCGGTGGTGGTGACAAATATGAAAATCCTTCAGATTTCACT
TTTACTC---------------------------------------------GTAAATGTAGCTGTGGCAACAGAGAGTT
GTGCCTTTGACTACTGTTATGTACCGACGCGTTGTATCCATATTGCCGGCCTATCTGATGAGGCAAGATAAAATCCGAAG
AAAAAGAAATTGCGCGCCCCAGCCTCTCTTGTACAGTATACATACCAGATCCTAC-------CACTTGGAGTACCACACA
GCCCAGATAGATAGCTTGGCTGGGCATACATCACATGCATGCGTTGCACTCACAGATTTGGTTCATTGATTGTTCGATTA
GGCCACCACCATGCGGCGGCGATCGGATATATCCTCCTAGCTAGCTCACCCTCTCTGCCAGACACATGCAGCAGCAGCAG
CTGGTCAGACAAGCCAGCACACTTAATGGCGCCGCAGCCGCATCCTGATCGCTGCCGCA------------CCTGGCCAC
GGGCGCCGCTCGGCACAGTACTTCTAGCACTAGCTATAGTGAGCCTGGGCGGCGGCGGCGGCGATGCCCTGAGCCTGGAC
CACTACCGGCAGAGCTGCCCGAGGGCGGAGGCGGCCGTGACGGCGGCGGTCCGGCAGGCCGTGGCCAAGGACCGCACCGT
GCCGGCCGGCCTGCTCCGCCTGCATTTCCACGACTGCTTCGTCAGGGGCTGCGACGCCTCCGTCCTCATCGACTCCACGG
CCGGCAACACGGCGGAGAAGGACGGCCCGCCCAACGCCTCGCTGCACGCCTTCTTCGTCATCGACAACGCCAAGCAGGCC
GTGGAGGCCATGTGCCCGGGCGTCGTCTCCTGCGCCGACATCCTCGCGCTCGCCGCCAGGGACGCCGTCGCGCTCTCCGG
CGGCCCGTCCTGGTCGCCGCTGCTGGGGCGCGGGGACGGGCGGGTGTCGCTGGCCAGCGACACCACCTCGGCGCTGCCGG
GCCCCGGGGCCAGCTTCGACCAGCTCAGGCAGGCGTTCCACGCGCTGGGGATGTCGGTCAAGGACCTGGTGGTGCTCTCC
GGCGGCCACACGCTGGGGTTCGCGCACTGCTCCTCCTTCCAGGGCCGCATCCACGGCTTCCGCCCCGGCGCCGACGTGGA
CCCGGCGCTGAACCCGTCCTTCGCGGCCGCGCTGCGCAGGGCGTGCCCGGCCAACAACACGGCCAGGGGCGCCGGGTCGG
GGATGGACCCCACGTCGGCGGCCTTCGACAACGCCTACTACCGGATGCTGCAGAGCGGGCGCGGGCTGCTGTCCTCCGAC
GAGGTGCTGCTGACGCACCCCAAGACGCGGCGGTTCGTGGCGCTGTACGCGGCGCGGCAGGACGCCTTCTTCAGGGCGTT
CGTGAGCTCCATGCTGAGGATGAGCGCGCTCAACCAGCCCGGCGAGGTCCGAGCAAACTGCCGGCGACACAACTGAAGCA
AGCAGTGGATCCCCTCCTG---CCTCCTCTGTCTCTGCTACATAACTGTATTTCGTTCTGATTAATTCCGGTACGTAGT-
---------AACTGT-----------GGCCGGCAATCTACAGACATTCTAGTTGAAAAAGGGCCTAC--AAGGGAATATC
TTGTTTCCTTCAAATAATACTTCTACACAATTTTCACAAGCTTATACTATTA--CTCAAGAAAGTTATTTTTTCGGGCCA
TAAG----------------------------------------------------------------------------
----------------ATTCAGAATTAGTAATCACCATAACTATTTGGGCCATAAGATTCAGAATGAGTTAATTTCTCCT
CTTGCAAATACCGTAAAAGATGCCAAACATTTCTCTATAATTCTAGGTTGTACCCTTGGTGTTAGACATGGGAAACAATT
GACTTCAATTAGGAGGTGAGTAAACATGCCGAACATGGTGATTTTCTTT-TAGAGTTTTGCAATATGGATGATATATTAG
GAGTGTGAGTTTTCGACAACTAATTCACTTGAGTG--TTTTTTTAATGTTAATGATGTTCTGCCTTAGAAGCCAATGTTA
TGGTAATCAAGGGAAGGCCATGGTTATGACAGTGGAGGGGAAACACGACGGCGTTCAAAAGCGACCGCCTGAAATAAAAT
CCAAGAGTATTGTAGTACATGCCAAGTGTGTGCCACAGTTTGAATCTTACATTCTATGATATGGCAAAATCTTGTGGCAA
AACTTTGTTGTCTCAGTTTCAGTTACACATGTGCAACT------------------------------------------
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>chr2A_83
--------------------------------------------------------------------------------
--GTATGTTTCAAACATCTTATGAAAAGCTAATTAGCCAAAGGTAAGTTGTTAAGAATTGAGAGAGTCAATTCAGGGGAG
AAGGAAGATGCGCAACACCCGGCTGCCGGTGGCGCCGGCAAGGCCTCGACCAGTAACGAGTCATAGCCGGCAGAGACGAG
TTAGAAGGTTGATGGGTGTAGATGTAGTCTACGTCGGAACTGAAGGTCAATGTCGCTTAGAGGGAAGGCCTTGGACGATG
GCAAGTTCAACTGTGTGTGCGGTTGTGGTTGTGGTAGGAGGGTGGTGGTGGGTGGTGGGTTGGGGTGGGGGGGTGGGGGG
AGGAAGGGACGTTGTGGGCCG-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CAGGTGATGGAGGAGGGAGAAGAGAAGGGAC
CAACTCGAGGTATAAGATGACGGAGCCTCATCCAACAGTTACTCACTCCGTTCGAAATTACTTGTCGCAGAAATGGATGT
ATCTAGATGTATTTTAGTTCTAGATACATATATCCGAGATAAGTAATTCTGAACAGAAGGAGTACTTATTTGTAACCAGC
CCCCAATTGTAAGAATGATAATTGACAATGATAGTGAGCGCGGTCGTGGTGACAAATGTAAAAGTCCTTCAGATTTCACC
ATTGAATGAAAATGACCTGTTAATGTACCTG------TTTTTTTTCGTGGTTGTAAATGTAGCTGTTGCAACAGAGGGTT
GTGCCTTTGACTACTGTGATGTACCCACGCATTGTGTCCATACTGCCGGCCTATCTGA--------TGTACCCACGCATT
GCA--------------CCCAGCCTCTCTTGTATACA---------------TAC-------CACTTGGAGTACCA--CA
GCCCAGATAGATAGCTTGGCTGGGCATACATCACATGCATGCGTTGCACTCACAGATTTGGTTCATTGATTGTTCGATTA
GGCCACCACCATGCGGCGGCGATCGGATATATCCTCCTAGCTAGCTCACCCTCTCTGCCAGACACATGCAGCAGCAGC--
-TGGTCAGACTAGCCAGCACACTTAATGGCGCCGCAGCTGCATCCTGATCGCTGCCGCA------------CCTGGCCAC
GGGCGCCGCTCGGCTCAGTGCTTCTAGCGCTAGCTATAGTGAGCCTGGGCGGCGGT------GATGCCCTGAGCCTGGAC
CACTACCGGCAGAGCTGCCCGAGGGCGGAGGCGGCCGTGGCGGCGGCGGTCCGGCAGGCCGTGGCCAAGGACCGCACCGT
GCCGGCCGGCCTGCTCCGCCTGCATTTCCACGACTGCTTCGTCCGGGGCTGCGACGCCTCCGTCCTCATCGACTCCACGG
CCGGCAACACCGCGGAGAAGGACGGCCCGCCCAACGCCTCGCTGCACGCCTTCTTCGTCGTCGACAACGCCAAGCAGGCC
GTGGAAGCCATGTGCCCGGGCGTCGTCTCCTGCGCCGACATCCTCGCGCTCGCCGCCAGGGACGCCGTCGCGCTCTCCGG
CGGCCCGTCCTGGTCGCCGCTGCTGGGGCGCGGGGACGGGCGGGTGTCGCTGGCCAGCGACACCACCTCTTTGCTGCCGG
GGCCCGGGGCCAGCTTCGACCAGCTCAGGCAGGCGTTCCACGCGCTGGGGATGTCGGTCAAGGACCTGGTGGTGCTCTCC
GGCGGCCACACGCTGGGGTTCGCGCACTGCTCCTCCTTCCAGGGCCGCATCCACGGCTTCCGGCCCGGCGCCGACGTGGA
CCCGGCGCTGAACCCGTCCTTCGCGGCCGCGCTGCGCAGGGCGTGCCCGGCCAACAACACGGCCCGGGGCGCCGGGTCGG
GGATGGACTCCACGTCCGCCACCTTCGACAACGCCTACTACCGGATGCTGCAGAGCGGCCGCGGGCTGCTGTCCTCCGAC
GAGGTGCTGCTGACGCACCCCAAGACGCGGCGGTTCGTGGCGCTGTACGCGGCGCGGCAGGACGCCTTCTTCAGGGCGTT
CGTGAGCTCCATGCTGAGGATGAGCGCGCTCAACCAGCCCGGCGAGGTCCGAGCAAACTGCCGGCGACACAACTGAAGCA
AGCAGTGGATCCCCTCCTCCTCCCTCCTCTGTCTCTGCCACATAACTGTATTTCGTTCTGATTAATTCCGGTACGTAGTA
ACTGTGTGTAACTGT-----------GGCCGGCAATCTACAGACATTCTAGTTGAAAAAGGGCCTAC--AAGGGAATATC
TTGTTTCCTTCAAATAATACTTCTAGACATTTTTCACAAGCTTA---TATTA--CTCAAGAAAGTTAAGAGTAAAAGAGA
GGTGTGTGGTAGAAAATGGTTGGTCTATTGTAAACTACATGTGGAG--------------------------AAAGTGCA
AGACCATATTAGCCACATTCAGAATAGTAAT----CACAACTATTTGGGCCATAAGATTCAGAATGAGATAACTTCTCCT
CTTGCAAATACCATAAAAGATGCCAAATATTTCTTTATAATTCTAGGTTGTCCCCTTGGTGTTAGCCATGAGAAACAATT
GACTTCAATTATGATGTGAGCAAACATGCCGAACACAATGAATCTTTTCCTAGAGTTTTCCAACATGGATGATATATTAG
GAGTGTGACTTTTCGACAACTA----------------------------------------------------------
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>SNPs
--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S----
---------------------S---------SS---S-------------------------------------------
-------------------S--------S---------------------------------------------------
-----S-------S----------------------S-------------------------------------------
S-------S----------S---------------S----------------S--S----------------S-SS---S
-S-S----------S-S--S------------------------------------------------------------
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---------------------------------------------------------S----------------------
S------------------------------------S------------------------------------------
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----------------------------S----------S----------------------------------------
---------------S----S------S---SSSSSS-------S-----------------------------------
-----------------------------------------------------------SSSSSS---------S-----
-S-----------------------------------------------------SSSSSSS------------------
------------------------------------------------------------------S-------S-----
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---S-------------------------------------------------------SSSSSSSSSSSS---------
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--------------------------S--------------S-----S---S----------------------------
------------------------------------------------S-------------------------------
--SS---------------------S------------------------------------------------------
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---------------------------------------S----------------------------------------
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------------------------------------------S-------------------------------------
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----S-----------S--S-------------------------------S----------------------------
---------------SSSSSSSSSSS---------------S---S---------------------SS-----------
---------------------------------------------------SSS------------S-------------
----S---------------------------------SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSS--------
-----------S------S----S-----S---------------------------------------------S----
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-S-----------S----------S-----SSSSSSS--S---S-------------------------S----------
-------------------------------------------------S---------------S--------------
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-----------------------S------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_678
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------------------GACGGAGCCTCATCCAACAA------------------------------------------
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>reverse_2337
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----------------GTCGTCCCTCCTCTGTCTCT--------------------------------------------
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