Multiple sequence alignment - TraesCS2B01G488500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G488500 chr2B 100.000 2366 0 0 1 2366 686040063 686042428 0.000000e+00 4370.0
1 TraesCS2B01G488500 chr2B 93.725 494 26 2 878 1368 686808136 686808627 0.000000e+00 736.0
2 TraesCS2B01G488500 chr2B 88.116 345 39 2 1025 1368 686449757 686450100 2.190000e-110 409.0
3 TraesCS2B01G488500 chr2B 87.826 345 40 2 1025 1368 685605609 685605952 1.020000e-108 403.0
4 TraesCS2B01G488500 chr2B 84.123 422 52 11 1 421 36900420 36900827 6.130000e-106 394.0
5 TraesCS2B01G488500 chr2B 85.791 373 51 2 984 1355 685763191 685763562 6.130000e-106 394.0
6 TraesCS2B01G488500 chr2B 85.970 335 47 0 1034 1368 685280087 685280421 2.240000e-95 359.0
7 TraesCS2B01G488500 chr2B 89.305 187 9 7 660 845 686807955 686808131 8.510000e-55 224.0
8 TraesCS2B01G488500 chr2B 87.742 155 11 3 660 806 686807775 686807929 8.690000e-40 174.0
9 TraesCS2B01G488500 chr2A 93.922 872 39 5 791 1651 711032939 711033807 0.000000e+00 1304.0
10 TraesCS2B01G488500 chr2A 84.949 392 46 4 977 1368 711056396 711056774 3.690000e-103 385.0
11 TraesCS2B01G488500 chr2A 84.010 394 58 5 978 1368 711021238 711021629 7.980000e-100 374.0
12 TraesCS2B01G488500 chr2A 80.062 321 64 0 1036 1356 601481679 601481999 3.040000e-59 239.0
13 TraesCS2B01G488500 chr2A 84.000 150 2 7 1678 1806 711034949 711035097 8.880000e-25 124.0
14 TraesCS2B01G488500 chr2A 87.179 78 8 2 1798 1874 76371839 76371763 1.160000e-13 87.9
15 TraesCS2B01G488500 chr6B 93.739 575 20 6 1804 2366 9364330 9363760 0.000000e+00 848.0
16 TraesCS2B01G488500 chr6B 97.297 37 1 0 1864 1900 2635262 2635226 1.960000e-06 63.9
17 TraesCS2B01G488500 chr1B 92.157 561 23 12 1806 2366 72019887 72019348 0.000000e+00 773.0
18 TraesCS2B01G488500 chr1B 100.000 34 0 0 1864 1897 679384486 679384519 1.960000e-06 63.9
19 TraesCS2B01G488500 chr3A 89.863 582 25 14 1796 2366 682271320 682271878 0.000000e+00 717.0
20 TraesCS2B01G488500 chr1A 93.973 448 20 6 1919 2366 545859398 545858958 0.000000e+00 671.0
21 TraesCS2B01G488500 chr1A 84.173 417 54 10 1 415 277857620 277857214 6.130000e-106 394.0
22 TraesCS2B01G488500 chr3D 88.388 577 19 14 1804 2366 96387182 96387724 0.000000e+00 651.0
23 TraesCS2B01G488500 chr3D 87.186 398 41 7 3 400 464767089 464767476 6.000000e-121 444.0
24 TraesCS2B01G488500 chr4A 90.683 483 21 5 1894 2366 613749044 613748576 2.580000e-174 621.0
25 TraesCS2B01G488500 chr4A 85.681 426 53 6 1 419 737176337 737176761 2.160000e-120 442.0
26 TraesCS2B01G488500 chr5B 87.886 421 41 7 1 420 596639372 596639783 9.830000e-134 486.0
27 TraesCS2B01G488500 chr5B 86.603 418 45 8 1 418 596683498 596683904 3.590000e-123 451.0
28 TraesCS2B01G488500 chr5B 89.568 278 15 8 1834 2110 617669812 617669548 8.100000e-90 340.0
29 TraesCS2B01G488500 chr5B 90.868 219 8 5 2157 2366 617669422 617669207 1.380000e-72 283.0
30 TraesCS2B01G488500 chr5B 97.368 38 0 1 1864 1901 59694230 59694266 1.960000e-06 63.9
31 TraesCS2B01G488500 chr3B 87.059 425 50 4 1 420 815982658 815983082 2.130000e-130 475.0
32 TraesCS2B01G488500 chr1D 86.461 421 52 3 1 418 352166941 352166523 7.710000e-125 457.0
33 TraesCS2B01G488500 chr1D 95.000 60 3 0 1796 1855 86741531 86741472 6.960000e-16 95.3
34 TraesCS2B01G488500 chr4D 84.670 424 57 8 1 420 302692442 302692023 1.310000e-112 416.0
35 TraesCS2B01G488500 chr4D 97.368 38 0 1 1864 1901 139637026 139636990 1.960000e-06 63.9
36 TraesCS2B01G488500 chr5D 86.940 268 30 4 1894 2157 25417851 25417585 1.780000e-76 296.0
37 TraesCS2B01G488500 chr5D 79.897 194 11 14 2197 2366 333999010 333998821 1.490000e-22 117.0
38 TraesCS2B01G488500 chr5D 96.667 60 2 0 1805 1864 25418060 25418001 1.500000e-17 100.0
39 TraesCS2B01G488500 chr5D 100.000 34 0 0 1864 1897 518005483 518005516 1.960000e-06 63.9
40 TraesCS2B01G488500 chr4B 94.483 145 5 3 1918 2060 623412354 623412211 1.100000e-53 220.0
41 TraesCS2B01G488500 chr4B 96.552 58 2 0 1804 1861 643646144 643646201 1.940000e-16 97.1
42 TraesCS2B01G488500 chr4B 100.000 34 0 0 1864 1897 21934268 21934235 1.960000e-06 63.9
43 TraesCS2B01G488500 chr6D 95.312 64 2 1 1792 1854 328744074 328744011 1.500000e-17 100.0
44 TraesCS2B01G488500 chr6D 94.643 56 2 1 1799 1853 9873750 9873805 4.190000e-13 86.1
45 TraesCS2B01G488500 chr2D 92.754 69 3 2 1806 1874 643846991 643847057 5.380000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G488500 chr2B 686040063 686042428 2365 False 4370.0 4370 100.000000 1 2366 1 chr2B.!!$F5 2365
1 TraesCS2B01G488500 chr2B 686807775 686808627 852 False 378.0 736 90.257333 660 1368 3 chr2B.!!$F7 708
2 TraesCS2B01G488500 chr2A 711032939 711035097 2158 False 714.0 1304 88.961000 791 1806 2 chr2A.!!$F4 1015
3 TraesCS2B01G488500 chr6B 9363760 9364330 570 True 848.0 848 93.739000 1804 2366 1 chr6B.!!$R2 562
4 TraesCS2B01G488500 chr1B 72019348 72019887 539 True 773.0 773 92.157000 1806 2366 1 chr1B.!!$R1 560
5 TraesCS2B01G488500 chr3A 682271320 682271878 558 False 717.0 717 89.863000 1796 2366 1 chr3A.!!$F1 570
6 TraesCS2B01G488500 chr3D 96387182 96387724 542 False 651.0 651 88.388000 1804 2366 1 chr3D.!!$F1 562
7 TraesCS2B01G488500 chr5B 617669207 617669812 605 True 311.5 340 90.218000 1834 2366 2 chr5B.!!$R1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.033781 TACCGGGTCGTGTTTTCCAG 59.966 55.0 6.32 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1372 1546 0.039527 ACTTCATTTTCGTTGCCCGC 60.04 50.0 0.0 0.0 36.19 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.510768 GTGCTCTATTGAGTACCGGG 57.489 55.000 12.99 0.00 45.92 5.73
23 24 1.755380 GTGCTCTATTGAGTACCGGGT 59.245 52.381 12.99 4.46 45.92 5.28
24 25 2.029623 TGCTCTATTGAGTACCGGGTC 58.970 52.381 6.32 0.00 42.13 4.46
25 26 1.001597 GCTCTATTGAGTACCGGGTCG 60.002 57.143 6.32 0.00 42.13 4.79
26 27 2.295885 CTCTATTGAGTACCGGGTCGT 58.704 52.381 6.32 0.00 35.67 4.34
27 28 2.019249 TCTATTGAGTACCGGGTCGTG 58.981 52.381 6.32 0.00 0.00 4.35
28 29 1.747355 CTATTGAGTACCGGGTCGTGT 59.253 52.381 6.32 0.00 0.00 4.49
29 30 0.971386 ATTGAGTACCGGGTCGTGTT 59.029 50.000 6.32 0.00 0.00 3.32
30 31 0.752054 TTGAGTACCGGGTCGTGTTT 59.248 50.000 6.32 0.00 0.00 2.83
31 32 0.752054 TGAGTACCGGGTCGTGTTTT 59.248 50.000 6.32 0.00 0.00 2.43
32 33 1.269726 TGAGTACCGGGTCGTGTTTTC 60.270 52.381 6.32 0.00 0.00 2.29
33 34 0.033920 AGTACCGGGTCGTGTTTTCC 59.966 55.000 6.32 0.00 0.00 3.13
34 35 0.249826 GTACCGGGTCGTGTTTTCCA 60.250 55.000 6.32 0.00 0.00 3.53
35 36 0.033781 TACCGGGTCGTGTTTTCCAG 59.966 55.000 6.32 0.00 0.00 3.86
36 37 1.964373 CCGGGTCGTGTTTTCCAGG 60.964 63.158 0.00 0.00 0.00 4.45
37 38 1.964373 CGGGTCGTGTTTTCCAGGG 60.964 63.158 0.00 0.00 0.00 4.45
38 39 1.149854 GGGTCGTGTTTTCCAGGGT 59.850 57.895 0.00 0.00 0.00 4.34
39 40 1.170290 GGGTCGTGTTTTCCAGGGTG 61.170 60.000 0.00 0.00 0.00 4.61
40 41 0.179040 GGTCGTGTTTTCCAGGGTGA 60.179 55.000 0.00 0.00 0.00 4.02
41 42 1.670791 GTCGTGTTTTCCAGGGTGAA 58.329 50.000 0.00 0.00 0.00 3.18
42 43 2.018515 GTCGTGTTTTCCAGGGTGAAA 58.981 47.619 0.00 0.00 32.60 2.69
43 44 2.424246 GTCGTGTTTTCCAGGGTGAAAA 59.576 45.455 0.00 0.00 40.82 2.29
44 45 3.067601 GTCGTGTTTTCCAGGGTGAAAAT 59.932 43.478 2.67 0.00 43.78 1.82
45 46 3.316868 TCGTGTTTTCCAGGGTGAAAATC 59.683 43.478 2.67 0.37 43.78 2.17
46 47 3.317993 CGTGTTTTCCAGGGTGAAAATCT 59.682 43.478 2.67 0.00 43.78 2.40
47 48 4.517453 CGTGTTTTCCAGGGTGAAAATCTA 59.483 41.667 2.67 0.00 43.78 1.98
48 49 5.009210 CGTGTTTTCCAGGGTGAAAATCTAA 59.991 40.000 2.67 0.00 43.78 2.10
49 50 6.447162 GTGTTTTCCAGGGTGAAAATCTAAG 58.553 40.000 2.67 0.00 43.78 2.18
50 51 5.538433 TGTTTTCCAGGGTGAAAATCTAAGG 59.462 40.000 2.67 0.00 43.78 2.69
51 52 5.333566 TTTCCAGGGTGAAAATCTAAGGT 57.666 39.130 0.00 0.00 31.56 3.50
52 53 4.569719 TCCAGGGTGAAAATCTAAGGTC 57.430 45.455 0.00 0.00 0.00 3.85
53 54 4.175962 TCCAGGGTGAAAATCTAAGGTCT 58.824 43.478 0.00 0.00 0.00 3.85
54 55 4.019321 TCCAGGGTGAAAATCTAAGGTCTG 60.019 45.833 0.00 0.00 0.00 3.51
55 56 4.265073 CAGGGTGAAAATCTAAGGTCTGG 58.735 47.826 0.00 0.00 0.00 3.86
56 57 3.017442 GGGTGAAAATCTAAGGTCTGGC 58.983 50.000 0.00 0.00 0.00 4.85
57 58 3.017442 GGTGAAAATCTAAGGTCTGGCC 58.983 50.000 0.00 0.00 37.58 5.36
80 81 3.383620 TTTTGGTTGTGCCTAGCAATG 57.616 42.857 0.00 0.00 41.47 2.82
81 82 1.255882 TTGGTTGTGCCTAGCAATGG 58.744 50.000 0.00 0.00 41.47 3.16
87 88 4.344237 GCCTAGCAATGGCCTTGT 57.656 55.556 3.32 0.56 44.32 3.16
88 89 2.583472 GCCTAGCAATGGCCTTGTT 58.417 52.632 3.32 6.90 44.32 2.83
89 90 0.174162 GCCTAGCAATGGCCTTGTTG 59.826 55.000 3.32 8.01 44.32 3.33
90 91 1.838112 CCTAGCAATGGCCTTGTTGA 58.162 50.000 16.78 0.00 42.56 3.18
91 92 2.170166 CCTAGCAATGGCCTTGTTGAA 58.830 47.619 16.78 6.07 42.56 2.69
92 93 2.165030 CCTAGCAATGGCCTTGTTGAAG 59.835 50.000 16.78 12.78 42.56 3.02
103 104 4.799419 CCTTGTTGAAGGCATTGTTTTG 57.201 40.909 0.00 0.00 42.60 2.44
104 105 3.560896 CCTTGTTGAAGGCATTGTTTTGG 59.439 43.478 0.00 0.00 42.60 3.28
105 106 3.191078 TGTTGAAGGCATTGTTTTGGG 57.809 42.857 0.00 0.00 0.00 4.12
106 107 2.768527 TGTTGAAGGCATTGTTTTGGGA 59.231 40.909 0.00 0.00 0.00 4.37
107 108 3.198635 TGTTGAAGGCATTGTTTTGGGAA 59.801 39.130 0.00 0.00 0.00 3.97
108 109 3.467374 TGAAGGCATTGTTTTGGGAAC 57.533 42.857 0.00 0.00 0.00 3.62
109 110 2.768527 TGAAGGCATTGTTTTGGGAACA 59.231 40.909 0.00 0.00 39.83 3.18
110 111 2.908688 AGGCATTGTTTTGGGAACAC 57.091 45.000 0.00 0.00 42.67 3.32
111 112 1.068434 AGGCATTGTTTTGGGAACACG 59.932 47.619 0.00 0.00 42.67 4.49
112 113 1.496934 GCATTGTTTTGGGAACACGG 58.503 50.000 0.00 0.00 42.67 4.94
113 114 1.202475 GCATTGTTTTGGGAACACGGT 60.202 47.619 0.00 0.00 42.67 4.83
114 115 2.738135 CATTGTTTTGGGAACACGGTC 58.262 47.619 0.00 0.00 42.67 4.79
115 116 2.131776 TTGTTTTGGGAACACGGTCT 57.868 45.000 0.00 0.00 42.67 3.85
116 117 2.131776 TGTTTTGGGAACACGGTCTT 57.868 45.000 0.00 0.00 42.67 3.01
117 118 2.448453 TGTTTTGGGAACACGGTCTTT 58.552 42.857 0.00 0.00 42.67 2.52
118 119 2.424246 TGTTTTGGGAACACGGTCTTTC 59.576 45.455 0.00 0.00 42.67 2.62
119 120 2.686405 GTTTTGGGAACACGGTCTTTCT 59.314 45.455 0.00 0.00 42.67 2.52
120 121 2.249844 TTGGGAACACGGTCTTTCTC 57.750 50.000 0.00 0.00 42.67 2.87
121 122 0.395312 TGGGAACACGGTCTTTCTCC 59.605 55.000 0.00 0.00 33.40 3.71
122 123 0.395312 GGGAACACGGTCTTTCTCCA 59.605 55.000 0.00 0.00 0.00 3.86
123 124 1.608283 GGGAACACGGTCTTTCTCCAG 60.608 57.143 0.00 0.00 0.00 3.86
124 125 1.608283 GGAACACGGTCTTTCTCCAGG 60.608 57.143 0.00 0.00 0.00 4.45
125 126 0.396811 AACACGGTCTTTCTCCAGGG 59.603 55.000 0.00 0.00 0.00 4.45
126 127 0.763223 ACACGGTCTTTCTCCAGGGT 60.763 55.000 0.00 0.00 0.00 4.34
127 128 0.320771 CACGGTCTTTCTCCAGGGTG 60.321 60.000 0.00 0.00 0.00 4.61
128 129 0.471211 ACGGTCTTTCTCCAGGGTGA 60.471 55.000 0.00 0.00 0.00 4.02
129 130 0.685097 CGGTCTTTCTCCAGGGTGAA 59.315 55.000 0.00 0.00 0.00 3.18
130 131 1.071699 CGGTCTTTCTCCAGGGTGAAA 59.928 52.381 13.22 13.22 36.56 2.69
131 132 2.486548 CGGTCTTTCTCCAGGGTGAAAA 60.487 50.000 14.39 5.71 37.23 2.29
132 133 2.885266 GGTCTTTCTCCAGGGTGAAAAC 59.115 50.000 14.39 13.92 37.23 2.43
133 134 2.885266 GTCTTTCTCCAGGGTGAAAACC 59.115 50.000 14.39 6.42 37.23 3.27
134 135 2.783510 TCTTTCTCCAGGGTGAAAACCT 59.216 45.455 14.39 0.00 37.23 3.50
135 136 3.977999 TCTTTCTCCAGGGTGAAAACCTA 59.022 43.478 14.39 1.78 37.23 3.08
136 137 3.782656 TTCTCCAGGGTGAAAACCTAC 57.217 47.619 0.56 0.00 36.32 3.18
137 138 1.621814 TCTCCAGGGTGAAAACCTACG 59.378 52.381 0.00 0.00 36.32 3.51
138 139 1.621814 CTCCAGGGTGAAAACCTACGA 59.378 52.381 0.00 0.00 36.32 3.43
139 140 2.236395 CTCCAGGGTGAAAACCTACGAT 59.764 50.000 0.00 0.00 36.32 3.73
140 141 2.235402 TCCAGGGTGAAAACCTACGATC 59.765 50.000 0.00 0.00 36.32 3.69
141 142 2.236395 CCAGGGTGAAAACCTACGATCT 59.764 50.000 0.00 0.00 36.32 2.75
142 143 3.307480 CCAGGGTGAAAACCTACGATCTT 60.307 47.826 0.00 0.00 36.32 2.40
143 144 4.324267 CAGGGTGAAAACCTACGATCTTT 58.676 43.478 0.00 0.00 36.32 2.52
144 145 4.154195 CAGGGTGAAAACCTACGATCTTTG 59.846 45.833 0.00 0.00 36.32 2.77
145 146 4.041198 AGGGTGAAAACCTACGATCTTTGA 59.959 41.667 0.00 0.00 36.32 2.69
146 147 4.941873 GGGTGAAAACCTACGATCTTTGAT 59.058 41.667 0.00 0.00 0.00 2.57
147 148 5.064834 GGGTGAAAACCTACGATCTTTGATC 59.935 44.000 0.00 0.00 0.00 2.92
148 149 5.220416 GGTGAAAACCTACGATCTTTGATCG 60.220 44.000 23.00 23.00 46.02 3.69
149 150 4.868171 TGAAAACCTACGATCTTTGATCGG 59.132 41.667 26.46 15.34 44.98 4.18
150 151 3.454371 AACCTACGATCTTTGATCGGG 57.546 47.619 26.46 21.67 44.98 5.14
151 152 1.068741 ACCTACGATCTTTGATCGGGC 59.931 52.381 26.46 0.00 44.98 6.13
152 153 1.068588 CCTACGATCTTTGATCGGGCA 59.931 52.381 26.46 14.35 44.98 5.36
153 154 2.483013 CCTACGATCTTTGATCGGGCAA 60.483 50.000 26.46 12.74 44.98 4.52
154 155 1.369625 ACGATCTTTGATCGGGCAAC 58.630 50.000 26.46 0.00 44.98 4.17
155 156 0.301687 CGATCTTTGATCGGGCAACG 59.698 55.000 18.68 0.00 46.11 4.10
167 168 1.486439 GGGCAACGACAATGTTTGTG 58.514 50.000 0.00 0.00 45.52 3.33
168 169 0.852136 GGCAACGACAATGTTTGTGC 59.148 50.000 7.34 7.34 45.52 4.57
169 170 1.554392 GCAACGACAATGTTTGTGCA 58.446 45.000 10.02 0.00 45.52 4.57
170 171 2.126467 GCAACGACAATGTTTGTGCAT 58.874 42.857 10.02 0.00 45.52 3.96
171 172 2.539274 GCAACGACAATGTTTGTGCATT 59.461 40.909 10.02 0.00 45.52 3.56
179 180 5.738118 CAATGTTTGTGCATTGTTTCCTT 57.262 34.783 9.78 0.00 46.24 3.36
180 181 5.740406 CAATGTTTGTGCATTGTTTCCTTC 58.260 37.500 9.78 0.00 46.24 3.46
181 182 4.734398 TGTTTGTGCATTGTTTCCTTCT 57.266 36.364 0.00 0.00 0.00 2.85
182 183 5.083533 TGTTTGTGCATTGTTTCCTTCTT 57.916 34.783 0.00 0.00 0.00 2.52
183 184 4.869297 TGTTTGTGCATTGTTTCCTTCTTG 59.131 37.500 0.00 0.00 0.00 3.02
184 185 4.998671 TTGTGCATTGTTTCCTTCTTGA 57.001 36.364 0.00 0.00 0.00 3.02
185 186 4.998671 TGTGCATTGTTTCCTTCTTGAA 57.001 36.364 0.00 0.00 0.00 2.69
186 187 4.935702 TGTGCATTGTTTCCTTCTTGAAG 58.064 39.130 3.55 3.55 0.00 3.02
187 188 4.202141 TGTGCATTGTTTCCTTCTTGAAGG 60.202 41.667 20.21 20.21 41.35 3.46
188 189 3.243839 TGCATTGTTTCCTTCTTGAAGGC 60.244 43.478 21.16 10.47 39.80 4.35
189 190 3.568538 CATTGTTTCCTTCTTGAAGGCG 58.431 45.455 21.16 3.04 39.80 5.52
190 191 2.341846 TGTTTCCTTCTTGAAGGCGT 57.658 45.000 21.16 0.00 39.80 5.68
191 192 2.650322 TGTTTCCTTCTTGAAGGCGTT 58.350 42.857 21.16 0.00 39.80 4.84
192 193 2.357637 TGTTTCCTTCTTGAAGGCGTTG 59.642 45.455 21.16 1.77 39.80 4.10
193 194 2.341846 TTCCTTCTTGAAGGCGTTGT 57.658 45.000 21.16 0.00 39.80 3.32
194 195 2.341846 TCCTTCTTGAAGGCGTTGTT 57.658 45.000 21.16 0.00 39.80 2.83
195 196 2.650322 TCCTTCTTGAAGGCGTTGTTT 58.350 42.857 21.16 0.00 39.80 2.83
196 197 3.020984 TCCTTCTTGAAGGCGTTGTTTT 58.979 40.909 21.16 0.00 39.80 2.43
197 198 3.445805 TCCTTCTTGAAGGCGTTGTTTTT 59.554 39.130 21.16 0.00 39.80 1.94
198 199 3.551485 CCTTCTTGAAGGCGTTGTTTTTG 59.449 43.478 15.43 0.00 32.43 2.44
199 200 3.157932 TCTTGAAGGCGTTGTTTTTGG 57.842 42.857 0.00 0.00 0.00 3.28
200 201 2.755655 TCTTGAAGGCGTTGTTTTTGGA 59.244 40.909 0.00 0.00 0.00 3.53
201 202 2.861462 TGAAGGCGTTGTTTTTGGAG 57.139 45.000 0.00 0.00 0.00 3.86
202 203 2.370349 TGAAGGCGTTGTTTTTGGAGA 58.630 42.857 0.00 0.00 0.00 3.71
203 204 2.755655 TGAAGGCGTTGTTTTTGGAGAA 59.244 40.909 0.00 0.00 0.00 2.87
204 205 3.193691 TGAAGGCGTTGTTTTTGGAGAAA 59.806 39.130 0.00 0.00 0.00 2.52
205 206 3.159353 AGGCGTTGTTTTTGGAGAAAC 57.841 42.857 0.00 0.00 39.41 2.78
206 207 2.758423 AGGCGTTGTTTTTGGAGAAACT 59.242 40.909 2.68 0.00 39.62 2.66
207 208 3.194755 AGGCGTTGTTTTTGGAGAAACTT 59.805 39.130 2.68 0.00 39.62 2.66
208 209 3.550275 GGCGTTGTTTTTGGAGAAACTTC 59.450 43.478 2.68 0.00 39.62 3.01
209 210 4.421058 GCGTTGTTTTTGGAGAAACTTCT 58.579 39.130 0.00 0.00 39.62 2.85
210 211 4.862574 GCGTTGTTTTTGGAGAAACTTCTT 59.137 37.500 0.00 0.00 39.62 2.52
211 212 5.347635 GCGTTGTTTTTGGAGAAACTTCTTT 59.652 36.000 0.00 0.00 39.62 2.52
212 213 6.453791 GCGTTGTTTTTGGAGAAACTTCTTTC 60.454 38.462 0.00 0.00 39.62 2.62
214 215 7.966204 CGTTGTTTTTGGAGAAACTTCTTTCTA 59.034 33.333 0.00 0.00 45.22 2.10
215 216 9.290483 GTTGTTTTTGGAGAAACTTCTTTCTAG 57.710 33.333 0.00 0.00 45.22 2.43
216 217 8.575649 TGTTTTTGGAGAAACTTCTTTCTAGT 57.424 30.769 0.00 0.00 45.22 2.57
217 218 8.674607 TGTTTTTGGAGAAACTTCTTTCTAGTC 58.325 33.333 0.00 0.00 45.22 2.59
218 219 7.803279 TTTTGGAGAAACTTCTTTCTAGTCC 57.197 36.000 0.00 0.00 45.22 3.85
219 220 5.135508 TGGAGAAACTTCTTTCTAGTCCG 57.864 43.478 0.00 0.00 45.22 4.79
220 221 4.021368 TGGAGAAACTTCTTTCTAGTCCGG 60.021 45.833 0.00 0.00 45.22 5.14
221 222 4.496360 GAGAAACTTCTTTCTAGTCCGGG 58.504 47.826 0.00 0.00 45.22 5.73
222 223 3.902467 AGAAACTTCTTTCTAGTCCGGGT 59.098 43.478 0.00 0.00 43.71 5.28
223 224 3.679824 AACTTCTTTCTAGTCCGGGTG 57.320 47.619 0.00 0.00 0.00 4.61
224 225 2.606378 ACTTCTTTCTAGTCCGGGTGT 58.394 47.619 0.00 0.00 0.00 4.16
225 226 2.970640 ACTTCTTTCTAGTCCGGGTGTT 59.029 45.455 0.00 0.00 0.00 3.32
226 227 3.244112 ACTTCTTTCTAGTCCGGGTGTTG 60.244 47.826 0.00 0.00 0.00 3.33
227 228 2.322658 TCTTTCTAGTCCGGGTGTTGT 58.677 47.619 0.00 0.00 0.00 3.32
228 229 2.298163 TCTTTCTAGTCCGGGTGTTGTC 59.702 50.000 0.00 0.00 0.00 3.18
229 230 2.005370 TTCTAGTCCGGGTGTTGTCT 57.995 50.000 0.00 0.00 0.00 3.41
230 231 2.005370 TCTAGTCCGGGTGTTGTCTT 57.995 50.000 0.00 0.00 0.00 3.01
231 232 2.322658 TCTAGTCCGGGTGTTGTCTTT 58.677 47.619 0.00 0.00 0.00 2.52
232 233 2.036733 TCTAGTCCGGGTGTTGTCTTTG 59.963 50.000 0.00 0.00 0.00 2.77
233 234 0.179029 AGTCCGGGTGTTGTCTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
234 235 1.527380 TCCGGGTGTTGTCTTTGGC 60.527 57.895 0.00 0.00 0.00 4.52
235 236 1.826054 CCGGGTGTTGTCTTTGGCA 60.826 57.895 0.00 0.00 0.00 4.92
236 237 1.654220 CGGGTGTTGTCTTTGGCAG 59.346 57.895 0.00 0.00 0.00 4.85
237 238 1.101049 CGGGTGTTGTCTTTGGCAGT 61.101 55.000 0.00 0.00 0.00 4.40
238 239 1.812324 CGGGTGTTGTCTTTGGCAGTA 60.812 52.381 0.00 0.00 0.00 2.74
239 240 1.880027 GGGTGTTGTCTTTGGCAGTAG 59.120 52.381 0.00 0.00 0.00 2.57
240 241 2.572290 GGTGTTGTCTTTGGCAGTAGT 58.428 47.619 0.00 0.00 0.00 2.73
241 242 2.949644 GGTGTTGTCTTTGGCAGTAGTT 59.050 45.455 0.00 0.00 0.00 2.24
242 243 4.131596 GGTGTTGTCTTTGGCAGTAGTTA 58.868 43.478 0.00 0.00 0.00 2.24
243 244 4.213482 GGTGTTGTCTTTGGCAGTAGTTAG 59.787 45.833 0.00 0.00 0.00 2.34
244 245 5.054477 GTGTTGTCTTTGGCAGTAGTTAGA 58.946 41.667 0.00 0.00 0.00 2.10
245 246 5.177696 GTGTTGTCTTTGGCAGTAGTTAGAG 59.822 44.000 0.00 0.00 0.00 2.43
246 247 4.537135 TGTCTTTGGCAGTAGTTAGAGG 57.463 45.455 0.00 0.00 0.00 3.69
247 248 3.260884 TGTCTTTGGCAGTAGTTAGAGGG 59.739 47.826 0.00 0.00 0.00 4.30
248 249 2.236395 TCTTTGGCAGTAGTTAGAGGGC 59.764 50.000 0.00 0.00 0.00 5.19
249 250 1.952621 TTGGCAGTAGTTAGAGGGCT 58.047 50.000 0.00 0.00 0.00 5.19
250 251 2.840640 TGGCAGTAGTTAGAGGGCTA 57.159 50.000 0.00 0.00 0.00 3.93
251 252 2.385803 TGGCAGTAGTTAGAGGGCTAC 58.614 52.381 0.00 0.00 38.20 3.58
252 253 2.024273 TGGCAGTAGTTAGAGGGCTACT 60.024 50.000 0.00 0.00 46.05 2.57
253 254 3.203710 TGGCAGTAGTTAGAGGGCTACTA 59.796 47.826 4.23 0.00 44.08 1.82
254 255 3.569277 GGCAGTAGTTAGAGGGCTACTAC 59.431 52.174 0.00 0.00 44.08 2.73
255 256 4.463070 GCAGTAGTTAGAGGGCTACTACT 58.537 47.826 8.02 8.02 44.08 2.57
256 257 4.276431 GCAGTAGTTAGAGGGCTACTACTG 59.724 50.000 25.83 25.83 46.19 2.74
257 258 4.276431 CAGTAGTTAGAGGGCTACTACTGC 59.724 50.000 21.56 5.81 44.08 4.40
258 259 3.673543 AGTTAGAGGGCTACTACTGCT 57.326 47.619 0.00 0.00 0.00 4.24
259 260 3.292460 AGTTAGAGGGCTACTACTGCTG 58.708 50.000 0.00 0.00 0.00 4.41
260 261 2.362717 GTTAGAGGGCTACTACTGCTGG 59.637 54.545 0.00 0.00 0.00 4.85
261 262 0.336737 AGAGGGCTACTACTGCTGGT 59.663 55.000 0.00 0.00 0.00 4.00
262 263 0.461961 GAGGGCTACTACTGCTGGTG 59.538 60.000 0.00 0.00 0.00 4.17
263 264 0.041238 AGGGCTACTACTGCTGGTGA 59.959 55.000 0.00 0.00 0.00 4.02
264 265 1.123928 GGGCTACTACTGCTGGTGAT 58.876 55.000 0.00 0.00 0.00 3.06
265 266 1.486726 GGGCTACTACTGCTGGTGATT 59.513 52.381 0.00 0.00 0.00 2.57
266 267 2.698797 GGGCTACTACTGCTGGTGATTA 59.301 50.000 0.00 0.00 0.00 1.75
267 268 3.134081 GGGCTACTACTGCTGGTGATTAA 59.866 47.826 0.00 0.00 0.00 1.40
268 269 4.120589 GGCTACTACTGCTGGTGATTAAC 58.879 47.826 0.00 0.00 0.00 2.01
278 279 2.935505 GTGATTAACCACCGTGGCA 58.064 52.632 17.99 4.09 42.67 4.92
279 280 0.802494 GTGATTAACCACCGTGGCAG 59.198 55.000 17.99 0.00 42.67 4.85
280 281 0.322098 TGATTAACCACCGTGGCAGG 60.322 55.000 17.99 0.00 42.67 4.85
281 282 1.001393 ATTAACCACCGTGGCAGGG 60.001 57.895 23.87 23.87 42.67 4.45
282 283 1.785353 ATTAACCACCGTGGCAGGGT 61.785 55.000 25.32 25.32 42.67 4.34
283 284 2.400269 TTAACCACCGTGGCAGGGTC 62.400 60.000 27.83 0.00 42.67 4.46
285 286 4.033776 CCACCGTGGCAGGGTCAT 62.034 66.667 27.83 5.41 33.44 3.06
286 287 2.034066 CACCGTGGCAGGGTCATT 59.966 61.111 27.83 5.01 33.44 2.57
287 288 1.603455 CACCGTGGCAGGGTCATTT 60.603 57.895 27.83 4.61 33.44 2.32
288 289 1.152830 ACCGTGGCAGGGTCATTTT 59.847 52.632 25.32 2.34 28.73 1.82
289 290 0.469144 ACCGTGGCAGGGTCATTTTT 60.469 50.000 25.32 1.56 28.73 1.94
343 344 6.615264 ATGTGTGCATCATAGATGTTCTTC 57.385 37.500 8.60 0.00 0.00 2.87
344 345 4.567959 TGTGTGCATCATAGATGTTCTTCG 59.432 41.667 8.60 0.00 0.00 3.79
345 346 4.025396 GTGTGCATCATAGATGTTCTTCGG 60.025 45.833 8.60 0.00 0.00 4.30
346 347 3.059325 GTGCATCATAGATGTTCTTCGGC 60.059 47.826 8.60 0.00 0.00 5.54
347 348 3.133691 GCATCATAGATGTTCTTCGGCA 58.866 45.455 8.60 0.00 0.00 5.69
348 349 3.750130 GCATCATAGATGTTCTTCGGCAT 59.250 43.478 8.60 0.00 0.00 4.40
349 350 4.142945 GCATCATAGATGTTCTTCGGCATC 60.143 45.833 8.60 0.00 41.13 3.91
351 352 5.282055 TCATAGATGTTCTTCGGCATCTT 57.718 39.130 11.53 0.00 46.66 2.40
352 353 5.052481 TCATAGATGTTCTTCGGCATCTTG 58.948 41.667 11.53 9.88 46.66 3.02
353 354 3.340814 AGATGTTCTTCGGCATCTTGT 57.659 42.857 0.00 0.00 46.66 3.16
354 355 3.679389 AGATGTTCTTCGGCATCTTGTT 58.321 40.909 0.00 0.00 46.66 2.83
355 356 3.438087 AGATGTTCTTCGGCATCTTGTTG 59.562 43.478 0.00 0.00 46.66 3.33
356 357 2.844946 TGTTCTTCGGCATCTTGTTGA 58.155 42.857 0.00 0.00 0.00 3.18
357 358 3.411446 TGTTCTTCGGCATCTTGTTGAT 58.589 40.909 0.00 0.00 35.40 2.57
365 366 2.846039 CATCTTGTTGATGCAGAGGC 57.154 50.000 0.00 0.00 44.96 4.70
366 367 2.366533 CATCTTGTTGATGCAGAGGCT 58.633 47.619 0.00 0.00 44.96 4.58
367 368 1.817357 TCTTGTTGATGCAGAGGCTG 58.183 50.000 0.00 0.00 41.91 4.85
368 369 0.809385 CTTGTTGATGCAGAGGCTGG 59.191 55.000 0.00 0.00 41.91 4.85
369 370 0.609957 TTGTTGATGCAGAGGCTGGG 60.610 55.000 0.00 0.00 41.91 4.45
370 371 1.001641 GTTGATGCAGAGGCTGGGT 60.002 57.895 0.00 0.00 41.91 4.51
371 372 1.001764 TTGATGCAGAGGCTGGGTG 60.002 57.895 0.00 0.00 41.91 4.61
372 373 1.782201 TTGATGCAGAGGCTGGGTGT 61.782 55.000 0.00 0.00 41.91 4.16
373 374 0.909133 TGATGCAGAGGCTGGGTGTA 60.909 55.000 0.00 0.00 41.91 2.90
374 375 0.253044 GATGCAGAGGCTGGGTGTAA 59.747 55.000 0.00 0.00 41.91 2.41
375 376 0.921896 ATGCAGAGGCTGGGTGTAAT 59.078 50.000 0.00 0.00 41.91 1.89
376 377 0.698238 TGCAGAGGCTGGGTGTAATT 59.302 50.000 0.00 0.00 41.91 1.40
377 378 1.098050 GCAGAGGCTGGGTGTAATTG 58.902 55.000 0.00 0.00 36.96 2.32
378 379 1.340017 GCAGAGGCTGGGTGTAATTGA 60.340 52.381 0.00 0.00 36.96 2.57
379 380 2.684927 GCAGAGGCTGGGTGTAATTGAT 60.685 50.000 0.00 0.00 36.96 2.57
380 381 3.433598 GCAGAGGCTGGGTGTAATTGATA 60.434 47.826 0.00 0.00 36.96 2.15
381 382 4.747931 GCAGAGGCTGGGTGTAATTGATAT 60.748 45.833 0.00 0.00 36.96 1.63
382 383 4.999950 CAGAGGCTGGGTGTAATTGATATC 59.000 45.833 0.00 0.00 0.00 1.63
383 384 4.910304 AGAGGCTGGGTGTAATTGATATCT 59.090 41.667 3.98 0.00 0.00 1.98
384 385 6.014242 CAGAGGCTGGGTGTAATTGATATCTA 60.014 42.308 3.98 0.00 0.00 1.98
385 386 6.732862 AGAGGCTGGGTGTAATTGATATCTAT 59.267 38.462 3.98 0.00 0.00 1.98
386 387 7.238514 AGAGGCTGGGTGTAATTGATATCTATT 59.761 37.037 15.23 15.23 0.00 1.73
387 388 7.759607 AGGCTGGGTGTAATTGATATCTATTT 58.240 34.615 15.94 4.61 0.00 1.40
388 389 7.667219 AGGCTGGGTGTAATTGATATCTATTTG 59.333 37.037 15.94 2.79 0.00 2.32
389 390 7.665559 GGCTGGGTGTAATTGATATCTATTTGA 59.334 37.037 15.94 2.98 0.00 2.69
390 391 9.236006 GCTGGGTGTAATTGATATCTATTTGAT 57.764 33.333 15.94 0.00 39.11 2.57
462 463 3.369546 GCTTGTAGCATGTGGTTTGTT 57.630 42.857 0.00 0.00 41.89 2.83
463 464 3.716601 GCTTGTAGCATGTGGTTTGTTT 58.283 40.909 0.00 0.00 41.89 2.83
464 465 4.865776 GCTTGTAGCATGTGGTTTGTTTA 58.134 39.130 0.00 0.00 41.89 2.01
465 466 4.917415 GCTTGTAGCATGTGGTTTGTTTAG 59.083 41.667 0.00 0.00 41.89 1.85
466 467 4.497473 TGTAGCATGTGGTTTGTTTAGC 57.503 40.909 0.00 0.00 0.00 3.09
467 468 4.141287 TGTAGCATGTGGTTTGTTTAGCT 58.859 39.130 0.00 0.00 35.06 3.32
468 469 4.582656 TGTAGCATGTGGTTTGTTTAGCTT 59.417 37.500 0.00 0.00 32.70 3.74
469 470 5.765677 TGTAGCATGTGGTTTGTTTAGCTTA 59.234 36.000 0.00 0.00 32.70 3.09
470 471 5.782893 AGCATGTGGTTTGTTTAGCTTAA 57.217 34.783 0.00 0.00 0.00 1.85
471 472 6.345096 AGCATGTGGTTTGTTTAGCTTAAT 57.655 33.333 0.00 0.00 0.00 1.40
472 473 7.461182 AGCATGTGGTTTGTTTAGCTTAATA 57.539 32.000 0.00 0.00 0.00 0.98
473 474 7.891561 AGCATGTGGTTTGTTTAGCTTAATAA 58.108 30.769 0.00 0.00 0.00 1.40
474 475 8.364142 AGCATGTGGTTTGTTTAGCTTAATAAA 58.636 29.630 3.62 3.62 0.00 1.40
475 476 9.150348 GCATGTGGTTTGTTTAGCTTAATAAAT 57.850 29.630 10.01 0.00 0.00 1.40
490 491 9.640952 AGCTTAATAAATCAATAAGTTAGGCCA 57.359 29.630 5.01 0.00 0.00 5.36
491 492 9.899226 GCTTAATAAATCAATAAGTTAGGCCAG 57.101 33.333 5.01 0.00 0.00 4.85
496 497 9.700831 ATAAATCAATAAGTTAGGCCAGTTTCT 57.299 29.630 5.01 0.00 0.00 2.52
498 499 9.528489 AAATCAATAAGTTAGGCCAGTTTCTAA 57.472 29.630 5.01 0.00 0.00 2.10
499 500 9.700831 AATCAATAAGTTAGGCCAGTTTCTAAT 57.299 29.630 5.01 0.00 0.00 1.73
504 505 6.944234 AGTTAGGCCAGTTTCTAATATTGC 57.056 37.500 5.01 0.00 0.00 3.56
505 506 6.423182 AGTTAGGCCAGTTTCTAATATTGCA 58.577 36.000 5.01 0.00 0.00 4.08
506 507 6.318900 AGTTAGGCCAGTTTCTAATATTGCAC 59.681 38.462 5.01 0.00 0.00 4.57
507 508 4.860022 AGGCCAGTTTCTAATATTGCACT 58.140 39.130 5.01 0.00 0.00 4.40
508 509 4.884164 AGGCCAGTTTCTAATATTGCACTC 59.116 41.667 5.01 0.00 0.00 3.51
509 510 4.260784 GGCCAGTTTCTAATATTGCACTCG 60.261 45.833 0.00 0.00 0.00 4.18
510 511 4.332819 GCCAGTTTCTAATATTGCACTCGT 59.667 41.667 0.00 0.00 0.00 4.18
511 512 5.522460 GCCAGTTTCTAATATTGCACTCGTA 59.478 40.000 0.00 0.00 0.00 3.43
512 513 6.292381 GCCAGTTTCTAATATTGCACTCGTAG 60.292 42.308 0.00 0.00 0.00 3.51
513 514 6.201044 CCAGTTTCTAATATTGCACTCGTAGG 59.799 42.308 0.00 0.00 0.00 3.18
514 515 6.757010 CAGTTTCTAATATTGCACTCGTAGGT 59.243 38.462 0.00 0.00 0.00 3.08
515 516 6.979238 AGTTTCTAATATTGCACTCGTAGGTC 59.021 38.462 0.00 0.00 0.00 3.85
516 517 6.710597 TTCTAATATTGCACTCGTAGGTCT 57.289 37.500 0.00 0.00 0.00 3.85
517 518 7.812690 TTCTAATATTGCACTCGTAGGTCTA 57.187 36.000 0.00 0.00 0.00 2.59
518 519 7.199541 TCTAATATTGCACTCGTAGGTCTAC 57.800 40.000 0.00 0.00 0.00 2.59
519 520 5.847111 AATATTGCACTCGTAGGTCTACA 57.153 39.130 8.61 0.00 35.87 2.74
520 521 5.847111 ATATTGCACTCGTAGGTCTACAA 57.153 39.130 8.61 0.00 35.87 2.41
521 522 4.737855 ATTGCACTCGTAGGTCTACAAT 57.262 40.909 8.61 0.00 35.87 2.71
522 523 4.530710 TTGCACTCGTAGGTCTACAATT 57.469 40.909 8.61 0.00 35.87 2.32
523 524 4.530710 TGCACTCGTAGGTCTACAATTT 57.469 40.909 8.61 0.00 35.87 1.82
524 525 5.648178 TGCACTCGTAGGTCTACAATTTA 57.352 39.130 8.61 0.00 35.87 1.40
525 526 5.647589 TGCACTCGTAGGTCTACAATTTAG 58.352 41.667 8.61 1.27 35.87 1.85
526 527 5.184479 TGCACTCGTAGGTCTACAATTTAGT 59.816 40.000 8.61 1.76 35.87 2.24
527 528 6.098017 GCACTCGTAGGTCTACAATTTAGTT 58.902 40.000 8.61 0.00 35.87 2.24
528 529 6.034683 GCACTCGTAGGTCTACAATTTAGTTG 59.965 42.308 8.61 0.00 43.64 3.16
529 530 6.034683 CACTCGTAGGTCTACAATTTAGTTGC 59.965 42.308 8.61 0.00 41.69 4.17
530 531 6.028146 TCGTAGGTCTACAATTTAGTTGCA 57.972 37.500 8.61 0.00 41.69 4.08
531 532 6.097356 TCGTAGGTCTACAATTTAGTTGCAG 58.903 40.000 8.61 0.00 41.69 4.41
532 533 5.867716 CGTAGGTCTACAATTTAGTTGCAGT 59.132 40.000 8.61 0.00 41.69 4.40
533 534 7.031372 CGTAGGTCTACAATTTAGTTGCAGTA 58.969 38.462 8.61 0.00 41.69 2.74
534 535 7.220300 CGTAGGTCTACAATTTAGTTGCAGTAG 59.780 40.741 8.61 0.00 41.69 2.57
535 536 7.005709 AGGTCTACAATTTAGTTGCAGTAGT 57.994 36.000 5.67 0.00 41.69 2.73
536 537 7.450903 AGGTCTACAATTTAGTTGCAGTAGTT 58.549 34.615 5.67 0.00 41.69 2.24
537 538 7.937394 AGGTCTACAATTTAGTTGCAGTAGTTT 59.063 33.333 5.67 0.00 41.69 2.66
538 539 8.565416 GGTCTACAATTTAGTTGCAGTAGTTTT 58.435 33.333 5.67 0.00 41.69 2.43
539 540 9.946165 GTCTACAATTTAGTTGCAGTAGTTTTT 57.054 29.630 5.67 0.00 41.69 1.94
563 564 9.874205 TTTTTGATAATGGGAGAGCAATTTAAG 57.126 29.630 0.00 0.00 0.00 1.85
564 565 8.593945 TTTGATAATGGGAGAGCAATTTAAGT 57.406 30.769 0.00 0.00 0.00 2.24
565 566 7.572523 TGATAATGGGAGAGCAATTTAAGTG 57.427 36.000 0.00 0.00 0.00 3.16
566 567 7.118723 TGATAATGGGAGAGCAATTTAAGTGT 58.881 34.615 0.00 0.00 0.00 3.55
567 568 8.271458 TGATAATGGGAGAGCAATTTAAGTGTA 58.729 33.333 0.00 0.00 0.00 2.90
568 569 9.120538 GATAATGGGAGAGCAATTTAAGTGTAA 57.879 33.333 0.00 0.00 0.00 2.41
569 570 7.961326 AATGGGAGAGCAATTTAAGTGTAAT 57.039 32.000 0.00 0.00 0.00 1.89
571 572 9.646522 AATGGGAGAGCAATTTAAGTGTAATAT 57.353 29.630 0.00 0.00 0.00 1.28
572 573 9.646522 ATGGGAGAGCAATTTAAGTGTAATATT 57.353 29.630 0.00 0.00 0.00 1.28
573 574 9.474313 TGGGAGAGCAATTTAAGTGTAATATTT 57.526 29.630 0.00 0.00 0.00 1.40
607 608 8.970859 ATATATTATTTATGGAGAGCAGTGCC 57.029 34.615 12.58 3.25 0.00 5.01
608 609 4.778213 TTATTTATGGAGAGCAGTGCCT 57.222 40.909 12.58 8.75 0.00 4.75
609 610 2.698855 TTTATGGAGAGCAGTGCCTC 57.301 50.000 19.56 19.56 0.00 4.70
610 611 0.461548 TTATGGAGAGCAGTGCCTCG 59.538 55.000 20.44 0.00 36.95 4.63
611 612 2.021068 TATGGAGAGCAGTGCCTCGC 62.021 60.000 20.44 14.94 36.95 5.03
612 613 4.074526 GGAGAGCAGTGCCTCGCA 62.075 66.667 20.44 0.00 36.95 5.10
613 614 2.047844 GAGAGCAGTGCCTCGCAA 60.048 61.111 12.58 0.00 41.47 4.85
614 615 1.669115 GAGAGCAGTGCCTCGCAAA 60.669 57.895 12.58 0.00 41.47 3.68
615 616 1.633852 GAGAGCAGTGCCTCGCAAAG 61.634 60.000 12.58 0.00 41.47 2.77
625 626 3.442996 CTCGCAAAGGACTACAGGG 57.557 57.895 0.00 0.00 0.00 4.45
626 627 0.741221 CTCGCAAAGGACTACAGGGC 60.741 60.000 0.00 0.00 0.00 5.19
627 628 1.003839 CGCAAAGGACTACAGGGCA 60.004 57.895 0.00 0.00 0.00 5.36
628 629 1.298859 CGCAAAGGACTACAGGGCAC 61.299 60.000 0.00 0.00 0.00 5.01
629 630 0.250727 GCAAAGGACTACAGGGCACA 60.251 55.000 0.00 0.00 0.00 4.57
630 631 1.523758 CAAAGGACTACAGGGCACAC 58.476 55.000 0.00 0.00 0.00 3.82
631 632 0.034896 AAAGGACTACAGGGCACACG 59.965 55.000 0.00 0.00 0.00 4.49
632 633 0.830444 AAGGACTACAGGGCACACGA 60.830 55.000 0.00 0.00 0.00 4.35
633 634 0.830444 AGGACTACAGGGCACACGAA 60.830 55.000 0.00 0.00 0.00 3.85
634 635 0.034337 GGACTACAGGGCACACGAAA 59.966 55.000 0.00 0.00 0.00 3.46
635 636 1.541670 GGACTACAGGGCACACGAAAA 60.542 52.381 0.00 0.00 0.00 2.29
636 637 2.215196 GACTACAGGGCACACGAAAAA 58.785 47.619 0.00 0.00 0.00 1.94
659 660 8.519799 AAAATAATCTAAGAAGGAATTCGCCA 57.480 30.769 0.00 0.00 0.00 5.69
660 661 8.519799 AAATAATCTAAGAAGGAATTCGCCAA 57.480 30.769 0.00 0.00 0.00 4.52
661 662 8.519799 AATAATCTAAGAAGGAATTCGCCAAA 57.480 30.769 0.00 0.00 0.00 3.28
662 663 6.834168 AATCTAAGAAGGAATTCGCCAAAA 57.166 33.333 0.00 0.00 0.00 2.44
663 664 6.834168 ATCTAAGAAGGAATTCGCCAAAAA 57.166 33.333 0.00 0.00 0.00 1.94
664 665 6.009115 TCTAAGAAGGAATTCGCCAAAAAC 57.991 37.500 0.00 0.00 0.00 2.43
680 681 6.308766 CGCCAAAAACAATCTAAGAAGGAATG 59.691 38.462 0.00 0.00 0.00 2.67
693 694 0.179000 AGGAATGTGACAGGGCGATC 59.821 55.000 0.00 0.00 0.00 3.69
708 709 2.092838 GGCGATCACGAAAGTTTCTCAG 59.907 50.000 13.56 3.71 46.40 3.35
722 723 2.031258 TCTCAGTCGTTTTGGTTGCA 57.969 45.000 0.00 0.00 0.00 4.08
725 726 4.130857 TCTCAGTCGTTTTGGTTGCATAA 58.869 39.130 0.00 0.00 0.00 1.90
729 730 5.049954 TCAGTCGTTTTGGTTGCATAAGTAC 60.050 40.000 0.00 0.00 0.00 2.73
770 771 1.185618 AGCACAGCGAAGAGTACCCA 61.186 55.000 0.00 0.00 0.00 4.51
772 773 0.737715 CACAGCGAAGAGTACCCAGC 60.738 60.000 0.00 0.00 0.00 4.85
776 777 1.889530 GCGAAGAGTACCCAGCCAGT 61.890 60.000 0.00 0.00 0.00 4.00
783 790 0.908180 GTACCCAGCCAGTACCCTGT 60.908 60.000 0.00 0.00 36.95 4.00
930 1104 5.726793 GCTTCCTCCTCCTTATATAATCCCA 59.273 44.000 0.00 0.00 0.00 4.37
934 1108 5.790618 CCTCCTCCTTATATAATCCCAACCA 59.209 44.000 0.00 0.00 0.00 3.67
1044 1218 2.790791 CCTCGCCGCCTTGATCTCT 61.791 63.158 0.00 0.00 0.00 3.10
1101 1275 0.904865 TCATCTCCTGTGGCGTCCTT 60.905 55.000 0.00 0.00 0.00 3.36
1143 1317 2.895680 GTCATCTCCAGAGCGCCA 59.104 61.111 2.29 0.00 0.00 5.69
1256 1430 2.743928 CGGCTTCTGGGTGTCAGC 60.744 66.667 0.00 0.00 43.06 4.26
1358 1532 4.037923 TGGAGGCTTTGTGATTCTGAAAAC 59.962 41.667 0.00 0.00 0.00 2.43
1377 1551 0.109919 CGAAGTAGTTTTTGGCGGGC 60.110 55.000 0.00 0.00 0.00 6.13
1403 1577 5.048713 ACGAAAATGAAGTGGTTGATCCTTC 60.049 40.000 0.00 2.68 36.09 3.46
1408 1582 4.803452 TGAAGTGGTTGATCCTTCCTTTT 58.197 39.130 6.30 0.00 34.95 2.27
1443 1617 9.471084 CTATCATGTACCGATGTTGTTGTAATA 57.529 33.333 5.39 0.00 0.00 0.98
1445 1619 8.725405 TCATGTACCGATGTTGTTGTAATATT 57.275 30.769 0.00 0.00 0.00 1.28
1479 1653 7.218204 GTGTCAGTTGTAATCTGTTTGTTTGTC 59.782 37.037 0.00 0.00 34.86 3.18
1485 1659 9.944663 GTTGTAATCTGTTTGTTTGTCTATCAA 57.055 29.630 0.00 0.00 0.00 2.57
1497 1671 8.800231 TGTTTGTCTATCAATTGTGTCATTTG 57.200 30.769 5.13 0.00 35.84 2.32
1509 1683 4.198530 TGTGTCATTTGTCAGCTTTGAGA 58.801 39.130 0.00 0.00 0.00 3.27
1510 1684 4.274214 TGTGTCATTTGTCAGCTTTGAGAG 59.726 41.667 0.00 0.00 0.00 3.20
1511 1685 3.817084 TGTCATTTGTCAGCTTTGAGAGG 59.183 43.478 0.00 0.00 0.00 3.69
1513 1687 4.276926 GTCATTTGTCAGCTTTGAGAGGTT 59.723 41.667 0.00 0.00 32.70 3.50
1515 1689 6.017109 GTCATTTGTCAGCTTTGAGAGGTTTA 60.017 38.462 0.00 0.00 32.70 2.01
1516 1690 6.545666 TCATTTGTCAGCTTTGAGAGGTTTAA 59.454 34.615 0.00 0.00 32.70 1.52
1545 1719 5.298989 TCCAACTGTAGTATGTTTGTGGT 57.701 39.130 0.00 0.00 0.00 4.16
1566 1747 6.772716 GTGGTGATGATATTTGGGTCTGTAAT 59.227 38.462 0.00 0.00 0.00 1.89
1601 1782 0.035056 AAGGGAGCCTGTGTGTATGC 60.035 55.000 0.00 0.00 32.13 3.14
1614 1795 0.880718 TGTATGCCGTTGTGCGTTCA 60.881 50.000 0.00 0.00 39.32 3.18
1633 1814 6.400940 GCGTTCAACCAATATGAAATTGTTGG 60.401 38.462 0.00 1.69 42.86 3.77
1651 1832 3.144068 TGGTTTGGGGGATCTGATCTA 57.856 47.619 16.61 0.00 0.00 1.98
1652 1833 3.680169 TGGTTTGGGGGATCTGATCTAT 58.320 45.455 16.61 0.00 0.00 1.98
1653 1834 4.838403 TGGTTTGGGGGATCTGATCTATA 58.162 43.478 16.61 0.00 0.00 1.31
1654 1835 5.424068 TGGTTTGGGGGATCTGATCTATAT 58.576 41.667 16.61 0.00 0.00 0.86
1657 1838 6.012508 GGTTTGGGGGATCTGATCTATATGAA 60.013 42.308 16.61 3.90 0.00 2.57
1659 1840 5.920347 TGGGGGATCTGATCTATATGAAGT 58.080 41.667 16.61 0.00 0.00 3.01
1660 1841 6.334296 TGGGGGATCTGATCTATATGAAGTT 58.666 40.000 16.61 0.00 0.00 2.66
1663 1844 6.070309 GGGGATCTGATCTATATGAAGTTGCT 60.070 42.308 16.61 0.00 0.00 3.91
1728 3032 0.526310 GGAACGATTCGTCCGGTACC 60.526 60.000 12.80 0.16 39.99 3.34
1730 3034 0.967380 AACGATTCGTCCGGTACCCT 60.967 55.000 12.80 0.00 39.99 4.34
1732 3036 1.738432 GATTCGTCCGGTACCCTCC 59.262 63.158 6.25 0.00 0.00 4.30
1733 3037 1.000739 ATTCGTCCGGTACCCTCCA 59.999 57.895 6.25 0.00 0.00 3.86
1737 3053 1.608627 GTCCGGTACCCTCCAGTGT 60.609 63.158 6.25 0.00 0.00 3.55
1793 3109 0.965363 CTGGGCCAAACTTGCGGTAT 60.965 55.000 8.04 0.00 0.00 2.73
1802 3118 5.399013 CCAAACTTGCGGTATCCTTAAAAG 58.601 41.667 0.00 0.00 0.00 2.27
1866 3186 6.810911 TCTCACATCTAACTTTCTAGCCATC 58.189 40.000 0.00 0.00 0.00 3.51
1936 3259 6.183360 CCTTCTCTTCTTCGTGTCTTGTTTTT 60.183 38.462 0.00 0.00 0.00 1.94
1937 3260 6.345920 TCTCTTCTTCGTGTCTTGTTTTTC 57.654 37.500 0.00 0.00 0.00 2.29
2117 3443 5.760743 AGTCTTTAGAGCTGGTTGTCTTTTC 59.239 40.000 0.00 0.00 0.00 2.29
2122 3450 5.254339 AGAGCTGGTTGTCTTTTCTTTTG 57.746 39.130 0.00 0.00 0.00 2.44
2164 3569 1.336755 GTGGAAACAAGGCGTCATGTT 59.663 47.619 4.54 4.54 46.06 2.71
2171 3576 2.747446 ACAAGGCGTCATGTTTATCCAC 59.253 45.455 0.00 0.00 0.00 4.02
2172 3577 2.746904 CAAGGCGTCATGTTTATCCACA 59.253 45.455 0.00 0.00 0.00 4.17
2185 3590 6.422333 TGTTTATCCACATATTCTTGCCTCA 58.578 36.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.029623 GACCCGGTACTCAATAGAGCA 58.970 52.381 0.00 0.00 46.09 4.26
5 6 1.001597 CGACCCGGTACTCAATAGAGC 60.002 57.143 0.00 0.00 46.09 4.09
7 8 2.019249 CACGACCCGGTACTCAATAGA 58.981 52.381 0.00 0.00 0.00 1.98
8 9 1.747355 ACACGACCCGGTACTCAATAG 59.253 52.381 0.00 0.00 0.00 1.73
9 10 1.838112 ACACGACCCGGTACTCAATA 58.162 50.000 0.00 0.00 0.00 1.90
10 11 0.971386 AACACGACCCGGTACTCAAT 59.029 50.000 0.00 0.00 0.00 2.57
11 12 0.752054 AAACACGACCCGGTACTCAA 59.248 50.000 0.00 0.00 0.00 3.02
12 13 0.752054 AAAACACGACCCGGTACTCA 59.248 50.000 0.00 0.00 0.00 3.41
13 14 1.422388 GAAAACACGACCCGGTACTC 58.578 55.000 0.00 0.00 0.00 2.59
14 15 0.033920 GGAAAACACGACCCGGTACT 59.966 55.000 0.00 0.00 0.00 2.73
15 16 0.249826 TGGAAAACACGACCCGGTAC 60.250 55.000 0.00 0.00 0.00 3.34
16 17 0.033781 CTGGAAAACACGACCCGGTA 59.966 55.000 0.00 0.00 0.00 4.02
17 18 1.227734 CTGGAAAACACGACCCGGT 60.228 57.895 0.00 0.00 0.00 5.28
18 19 1.964373 CCTGGAAAACACGACCCGG 60.964 63.158 0.00 0.00 0.00 5.73
19 20 1.964373 CCCTGGAAAACACGACCCG 60.964 63.158 0.00 0.00 0.00 5.28
20 21 1.149854 ACCCTGGAAAACACGACCC 59.850 57.895 0.00 0.00 0.00 4.46
21 22 0.179040 TCACCCTGGAAAACACGACC 60.179 55.000 0.00 0.00 0.00 4.79
22 23 1.670791 TTCACCCTGGAAAACACGAC 58.329 50.000 0.00 0.00 0.00 4.34
23 24 2.421751 TTTCACCCTGGAAAACACGA 57.578 45.000 0.00 0.00 34.05 4.35
24 25 3.317993 AGATTTTCACCCTGGAAAACACG 59.682 43.478 0.00 0.00 46.19 4.49
25 26 4.937201 AGATTTTCACCCTGGAAAACAC 57.063 40.909 0.00 2.49 46.19 3.32
26 27 5.538433 CCTTAGATTTTCACCCTGGAAAACA 59.462 40.000 0.00 0.00 46.19 2.83
27 28 5.538813 ACCTTAGATTTTCACCCTGGAAAAC 59.461 40.000 0.00 0.00 46.19 2.43
29 30 5.074515 AGACCTTAGATTTTCACCCTGGAAA 59.925 40.000 0.00 0.00 35.11 3.13
30 31 4.601857 AGACCTTAGATTTTCACCCTGGAA 59.398 41.667 0.00 0.00 0.00 3.53
31 32 4.019321 CAGACCTTAGATTTTCACCCTGGA 60.019 45.833 0.00 0.00 0.00 3.86
32 33 4.265073 CAGACCTTAGATTTTCACCCTGG 58.735 47.826 0.00 0.00 0.00 4.45
33 34 4.265073 CCAGACCTTAGATTTTCACCCTG 58.735 47.826 0.00 0.00 0.00 4.45
34 35 3.308473 GCCAGACCTTAGATTTTCACCCT 60.308 47.826 0.00 0.00 0.00 4.34
35 36 3.017442 GCCAGACCTTAGATTTTCACCC 58.983 50.000 0.00 0.00 0.00 4.61
36 37 3.017442 GGCCAGACCTTAGATTTTCACC 58.983 50.000 0.00 0.00 34.51 4.02
59 60 3.494048 CCATTGCTAGGCACAACCAAAAA 60.494 43.478 0.00 0.00 43.14 1.94
60 61 2.036992 CCATTGCTAGGCACAACCAAAA 59.963 45.455 0.00 0.00 43.14 2.44
61 62 1.617850 CCATTGCTAGGCACAACCAAA 59.382 47.619 0.00 0.00 43.14 3.28
62 63 1.255882 CCATTGCTAGGCACAACCAA 58.744 50.000 0.00 0.00 43.14 3.67
63 64 2.959967 CCATTGCTAGGCACAACCA 58.040 52.632 0.00 0.00 43.14 3.67
71 72 1.838112 TCAACAAGGCCATTGCTAGG 58.162 50.000 5.01 0.00 43.15 3.02
72 73 2.165030 CCTTCAACAAGGCCATTGCTAG 59.835 50.000 5.01 7.33 43.14 3.42
73 74 2.170166 CCTTCAACAAGGCCATTGCTA 58.830 47.619 5.01 0.00 43.14 3.49
74 75 0.971386 CCTTCAACAAGGCCATTGCT 59.029 50.000 5.01 0.00 43.14 3.91
75 76 3.520187 CCTTCAACAAGGCCATTGC 57.480 52.632 5.01 0.00 43.14 3.56
83 84 3.560896 CCCAAAACAATGCCTTCAACAAG 59.439 43.478 0.00 0.00 0.00 3.16
84 85 3.198635 TCCCAAAACAATGCCTTCAACAA 59.801 39.130 0.00 0.00 0.00 2.83
85 86 2.768527 TCCCAAAACAATGCCTTCAACA 59.231 40.909 0.00 0.00 0.00 3.33
86 87 3.467374 TCCCAAAACAATGCCTTCAAC 57.533 42.857 0.00 0.00 0.00 3.18
87 88 3.198635 TGTTCCCAAAACAATGCCTTCAA 59.801 39.130 0.00 0.00 0.00 2.69
88 89 2.768527 TGTTCCCAAAACAATGCCTTCA 59.231 40.909 0.00 0.00 0.00 3.02
89 90 3.130633 GTGTTCCCAAAACAATGCCTTC 58.869 45.455 0.00 0.00 31.20 3.46
90 91 2.482839 CGTGTTCCCAAAACAATGCCTT 60.483 45.455 0.00 0.00 31.20 4.35
91 92 1.068434 CGTGTTCCCAAAACAATGCCT 59.932 47.619 0.00 0.00 31.20 4.75
92 93 1.496934 CGTGTTCCCAAAACAATGCC 58.503 50.000 0.00 0.00 31.20 4.40
93 94 1.202475 ACCGTGTTCCCAAAACAATGC 60.202 47.619 0.00 0.00 31.20 3.56
94 95 2.360801 AGACCGTGTTCCCAAAACAATG 59.639 45.455 0.00 0.00 31.20 2.82
95 96 2.661718 AGACCGTGTTCCCAAAACAAT 58.338 42.857 0.00 0.00 31.20 2.71
96 97 2.131776 AGACCGTGTTCCCAAAACAA 57.868 45.000 0.00 0.00 31.20 2.83
97 98 2.131776 AAGACCGTGTTCCCAAAACA 57.868 45.000 0.00 0.00 0.00 2.83
98 99 2.686405 AGAAAGACCGTGTTCCCAAAAC 59.314 45.455 0.00 0.00 0.00 2.43
99 100 2.946990 GAGAAAGACCGTGTTCCCAAAA 59.053 45.455 0.00 0.00 0.00 2.44
100 101 2.567985 GAGAAAGACCGTGTTCCCAAA 58.432 47.619 0.00 0.00 0.00 3.28
101 102 1.202722 GGAGAAAGACCGTGTTCCCAA 60.203 52.381 0.00 0.00 0.00 4.12
102 103 0.395312 GGAGAAAGACCGTGTTCCCA 59.605 55.000 0.00 0.00 0.00 4.37
103 104 0.395312 TGGAGAAAGACCGTGTTCCC 59.605 55.000 0.00 0.00 0.00 3.97
104 105 1.608283 CCTGGAGAAAGACCGTGTTCC 60.608 57.143 0.00 0.00 0.00 3.62
105 106 1.608283 CCCTGGAGAAAGACCGTGTTC 60.608 57.143 0.00 0.00 0.00 3.18
106 107 0.396811 CCCTGGAGAAAGACCGTGTT 59.603 55.000 0.00 0.00 0.00 3.32
107 108 0.763223 ACCCTGGAGAAAGACCGTGT 60.763 55.000 0.00 0.00 0.00 4.49
108 109 0.320771 CACCCTGGAGAAAGACCGTG 60.321 60.000 0.00 0.00 0.00 4.94
109 110 0.471211 TCACCCTGGAGAAAGACCGT 60.471 55.000 0.00 0.00 0.00 4.83
110 111 0.685097 TTCACCCTGGAGAAAGACCG 59.315 55.000 0.00 0.00 0.00 4.79
111 112 2.885266 GTTTTCACCCTGGAGAAAGACC 59.115 50.000 8.46 0.00 36.42 3.85
112 113 2.885266 GGTTTTCACCCTGGAGAAAGAC 59.115 50.000 8.46 9.45 36.42 3.01
113 114 2.783510 AGGTTTTCACCCTGGAGAAAGA 59.216 45.455 8.46 0.04 45.63 2.52
114 115 3.229697 AGGTTTTCACCCTGGAGAAAG 57.770 47.619 8.46 0.00 45.63 2.62
115 116 3.495453 CGTAGGTTTTCACCCTGGAGAAA 60.495 47.826 4.90 4.90 45.63 2.52
116 117 2.038033 CGTAGGTTTTCACCCTGGAGAA 59.962 50.000 0.00 0.00 45.63 2.87
117 118 1.621814 CGTAGGTTTTCACCCTGGAGA 59.378 52.381 0.00 0.00 45.63 3.71
118 119 1.621814 TCGTAGGTTTTCACCCTGGAG 59.378 52.381 0.00 0.00 45.63 3.86
119 120 1.719529 TCGTAGGTTTTCACCCTGGA 58.280 50.000 0.00 0.00 45.63 3.86
120 121 2.236395 AGATCGTAGGTTTTCACCCTGG 59.764 50.000 0.00 0.00 45.63 4.45
121 122 3.611766 AGATCGTAGGTTTTCACCCTG 57.388 47.619 0.00 0.00 45.63 4.45
122 123 4.041198 TCAAAGATCGTAGGTTTTCACCCT 59.959 41.667 0.00 0.00 45.63 4.34
123 124 4.320870 TCAAAGATCGTAGGTTTTCACCC 58.679 43.478 0.00 0.00 45.63 4.61
124 125 5.220416 CGATCAAAGATCGTAGGTTTTCACC 60.220 44.000 18.37 0.00 38.79 4.02
125 126 5.220416 CCGATCAAAGATCGTAGGTTTTCAC 60.220 44.000 22.93 0.00 39.67 3.18
126 127 4.868171 CCGATCAAAGATCGTAGGTTTTCA 59.132 41.667 22.93 0.00 39.67 2.69
127 128 4.270325 CCCGATCAAAGATCGTAGGTTTTC 59.730 45.833 22.93 0.00 39.67 2.29
128 129 4.189231 CCCGATCAAAGATCGTAGGTTTT 58.811 43.478 22.93 0.00 39.67 2.43
129 130 3.793559 CCCGATCAAAGATCGTAGGTTT 58.206 45.455 22.93 0.00 39.67 3.27
130 131 2.483188 GCCCGATCAAAGATCGTAGGTT 60.483 50.000 22.93 0.00 39.67 3.50
131 132 1.068741 GCCCGATCAAAGATCGTAGGT 59.931 52.381 22.93 0.00 39.67 3.08
132 133 1.068588 TGCCCGATCAAAGATCGTAGG 59.931 52.381 22.93 19.11 39.67 3.18
133 134 2.509052 TGCCCGATCAAAGATCGTAG 57.491 50.000 22.93 16.45 39.67 3.51
134 135 2.546778 GTTGCCCGATCAAAGATCGTA 58.453 47.619 22.93 10.16 39.67 3.43
135 136 1.369625 GTTGCCCGATCAAAGATCGT 58.630 50.000 22.93 0.00 39.67 3.73
136 137 0.301687 CGTTGCCCGATCAAAGATCG 59.698 55.000 19.37 19.37 39.56 3.69
137 138 1.651987 TCGTTGCCCGATCAAAGATC 58.348 50.000 0.00 0.00 41.60 2.75
138 139 3.853104 TCGTTGCCCGATCAAAGAT 57.147 47.368 0.00 0.00 41.60 2.40
146 147 0.309302 CAAACATTGTCGTTGCCCGA 59.691 50.000 0.00 0.00 45.00 5.14
147 148 0.030101 ACAAACATTGTCGTTGCCCG 59.970 50.000 1.93 0.00 40.56 6.13
148 149 1.486439 CACAAACATTGTCGTTGCCC 58.514 50.000 1.93 0.00 43.23 5.36
149 150 0.852136 GCACAAACATTGTCGTTGCC 59.148 50.000 1.93 0.00 43.23 4.52
150 151 1.554392 TGCACAAACATTGTCGTTGC 58.446 45.000 8.70 8.70 43.23 4.17
158 159 5.673514 AGAAGGAAACAATGCACAAACATT 58.326 33.333 0.00 0.00 40.90 2.71
159 160 5.280654 AGAAGGAAACAATGCACAAACAT 57.719 34.783 0.00 0.00 0.00 2.71
160 161 4.734398 AGAAGGAAACAATGCACAAACA 57.266 36.364 0.00 0.00 0.00 2.83
161 162 5.108517 TCAAGAAGGAAACAATGCACAAAC 58.891 37.500 0.00 0.00 0.00 2.93
162 163 5.336150 TCAAGAAGGAAACAATGCACAAA 57.664 34.783 0.00 0.00 0.00 2.83
163 164 4.998671 TCAAGAAGGAAACAATGCACAA 57.001 36.364 0.00 0.00 0.00 3.33
164 165 4.935702 CTTCAAGAAGGAAACAATGCACA 58.064 39.130 1.86 0.00 34.87 4.57
177 178 3.551485 CCAAAAACAACGCCTTCAAGAAG 59.449 43.478 2.83 2.83 38.14 2.85
178 179 3.193691 TCCAAAAACAACGCCTTCAAGAA 59.806 39.130 0.00 0.00 0.00 2.52
179 180 2.755655 TCCAAAAACAACGCCTTCAAGA 59.244 40.909 0.00 0.00 0.00 3.02
180 181 3.115554 CTCCAAAAACAACGCCTTCAAG 58.884 45.455 0.00 0.00 0.00 3.02
181 182 2.755655 TCTCCAAAAACAACGCCTTCAA 59.244 40.909 0.00 0.00 0.00 2.69
182 183 2.370349 TCTCCAAAAACAACGCCTTCA 58.630 42.857 0.00 0.00 0.00 3.02
183 184 3.430333 TTCTCCAAAAACAACGCCTTC 57.570 42.857 0.00 0.00 0.00 3.46
184 185 3.194755 AGTTTCTCCAAAAACAACGCCTT 59.805 39.130 2.73 0.00 40.77 4.35
185 186 2.758423 AGTTTCTCCAAAAACAACGCCT 59.242 40.909 2.73 0.00 40.77 5.52
186 187 3.159353 AGTTTCTCCAAAAACAACGCC 57.841 42.857 2.73 0.00 40.77 5.68
187 188 4.421058 AGAAGTTTCTCCAAAAACAACGC 58.579 39.130 2.73 0.00 40.77 4.84
188 189 6.944557 AAAGAAGTTTCTCCAAAAACAACG 57.055 33.333 2.73 0.00 40.77 4.10
201 202 3.995048 CACCCGGACTAGAAAGAAGTTTC 59.005 47.826 0.73 0.00 42.25 2.78
202 203 3.390311 ACACCCGGACTAGAAAGAAGTTT 59.610 43.478 0.73 0.00 0.00 2.66
203 204 2.970640 ACACCCGGACTAGAAAGAAGTT 59.029 45.455 0.73 0.00 0.00 2.66
204 205 2.606378 ACACCCGGACTAGAAAGAAGT 58.394 47.619 0.73 0.00 0.00 3.01
205 206 3.244112 ACAACACCCGGACTAGAAAGAAG 60.244 47.826 0.73 0.00 0.00 2.85
206 207 2.701951 ACAACACCCGGACTAGAAAGAA 59.298 45.455 0.73 0.00 0.00 2.52
207 208 2.298163 GACAACACCCGGACTAGAAAGA 59.702 50.000 0.73 0.00 0.00 2.52
208 209 2.299297 AGACAACACCCGGACTAGAAAG 59.701 50.000 0.73 0.00 0.00 2.62
209 210 2.322658 AGACAACACCCGGACTAGAAA 58.677 47.619 0.73 0.00 0.00 2.52
210 211 2.005370 AGACAACACCCGGACTAGAA 57.995 50.000 0.73 0.00 0.00 2.10
211 212 2.005370 AAGACAACACCCGGACTAGA 57.995 50.000 0.73 0.00 0.00 2.43
212 213 2.413837 CAAAGACAACACCCGGACTAG 58.586 52.381 0.73 0.00 0.00 2.57
213 214 1.071071 CCAAAGACAACACCCGGACTA 59.929 52.381 0.73 0.00 0.00 2.59
214 215 0.179029 CCAAAGACAACACCCGGACT 60.179 55.000 0.73 0.00 0.00 3.85
215 216 1.792118 GCCAAAGACAACACCCGGAC 61.792 60.000 0.73 0.00 0.00 4.79
216 217 1.527380 GCCAAAGACAACACCCGGA 60.527 57.895 0.73 0.00 0.00 5.14
217 218 1.795170 CTGCCAAAGACAACACCCGG 61.795 60.000 0.00 0.00 0.00 5.73
218 219 1.101049 ACTGCCAAAGACAACACCCG 61.101 55.000 0.00 0.00 0.00 5.28
219 220 1.880027 CTACTGCCAAAGACAACACCC 59.120 52.381 0.00 0.00 0.00 4.61
220 221 2.572290 ACTACTGCCAAAGACAACACC 58.428 47.619 0.00 0.00 0.00 4.16
221 222 5.054477 TCTAACTACTGCCAAAGACAACAC 58.946 41.667 0.00 0.00 0.00 3.32
222 223 5.284861 TCTAACTACTGCCAAAGACAACA 57.715 39.130 0.00 0.00 0.00 3.33
223 224 4.691216 CCTCTAACTACTGCCAAAGACAAC 59.309 45.833 0.00 0.00 0.00 3.32
224 225 4.262894 CCCTCTAACTACTGCCAAAGACAA 60.263 45.833 0.00 0.00 0.00 3.18
225 226 3.260884 CCCTCTAACTACTGCCAAAGACA 59.739 47.826 0.00 0.00 0.00 3.41
226 227 3.863041 CCCTCTAACTACTGCCAAAGAC 58.137 50.000 0.00 0.00 0.00 3.01
227 228 2.236395 GCCCTCTAACTACTGCCAAAGA 59.764 50.000 0.00 0.00 0.00 2.52
228 229 2.237392 AGCCCTCTAACTACTGCCAAAG 59.763 50.000 0.00 0.00 0.00 2.77
229 230 2.266279 AGCCCTCTAACTACTGCCAAA 58.734 47.619 0.00 0.00 0.00 3.28
230 231 1.952621 AGCCCTCTAACTACTGCCAA 58.047 50.000 0.00 0.00 0.00 4.52
231 232 2.024273 AGTAGCCCTCTAACTACTGCCA 60.024 50.000 2.06 0.00 45.65 4.92
232 233 2.668625 AGTAGCCCTCTAACTACTGCC 58.331 52.381 2.06 0.00 45.65 4.85
233 234 4.276431 CAGTAGTAGCCCTCTAACTACTGC 59.724 50.000 21.95 13.54 46.54 4.40
234 235 4.276431 GCAGTAGTAGCCCTCTAACTACTG 59.724 50.000 26.24 26.24 46.54 2.74
236 237 4.276431 CAGCAGTAGTAGCCCTCTAACTAC 59.724 50.000 4.15 4.15 39.25 2.73
237 238 4.462133 CAGCAGTAGTAGCCCTCTAACTA 58.538 47.826 0.00 0.00 0.00 2.24
238 239 3.292460 CAGCAGTAGTAGCCCTCTAACT 58.708 50.000 0.00 0.00 0.00 2.24
239 240 2.362717 CCAGCAGTAGTAGCCCTCTAAC 59.637 54.545 0.00 0.00 0.00 2.34
240 241 2.024273 ACCAGCAGTAGTAGCCCTCTAA 60.024 50.000 0.00 0.00 0.00 2.10
241 242 1.569548 ACCAGCAGTAGTAGCCCTCTA 59.430 52.381 0.00 0.00 0.00 2.43
242 243 0.336737 ACCAGCAGTAGTAGCCCTCT 59.663 55.000 0.00 0.00 0.00 3.69
243 244 0.461961 CACCAGCAGTAGTAGCCCTC 59.538 60.000 0.00 0.00 0.00 4.30
244 245 0.041238 TCACCAGCAGTAGTAGCCCT 59.959 55.000 0.00 0.00 0.00 5.19
245 246 1.123928 ATCACCAGCAGTAGTAGCCC 58.876 55.000 0.00 0.00 0.00 5.19
246 247 2.990066 AATCACCAGCAGTAGTAGCC 57.010 50.000 0.00 0.00 0.00 3.93
247 248 4.120589 GGTTAATCACCAGCAGTAGTAGC 58.879 47.826 0.00 0.00 46.42 3.58
260 261 0.802494 CTGCCACGGTGGTTAATCAC 59.198 55.000 26.86 10.56 40.46 3.06
261 262 0.322098 CCTGCCACGGTGGTTAATCA 60.322 55.000 26.86 15.22 40.46 2.57
262 263 1.029947 CCCTGCCACGGTGGTTAATC 61.030 60.000 26.86 11.43 40.46 1.75
263 264 1.001393 CCCTGCCACGGTGGTTAAT 60.001 57.895 26.86 0.00 40.46 1.40
264 265 2.400269 GACCCTGCCACGGTGGTTAA 62.400 60.000 26.86 13.01 40.46 2.01
265 266 2.850130 ACCCTGCCACGGTGGTTA 60.850 61.111 26.86 15.88 40.46 2.85
266 267 4.265056 GACCCTGCCACGGTGGTT 62.265 66.667 26.86 7.90 40.46 3.67
268 269 3.567579 AATGACCCTGCCACGGTGG 62.568 63.158 22.87 22.87 41.55 4.61
269 270 1.178534 AAAATGACCCTGCCACGGTG 61.179 55.000 0.00 0.00 32.27 4.94
270 271 0.469144 AAAAATGACCCTGCCACGGT 60.469 50.000 0.00 0.00 35.88 4.83
271 272 2.350738 AAAAATGACCCTGCCACGG 58.649 52.632 0.00 0.00 0.00 4.94
320 321 5.235831 CGAAGAACATCTATGATGCACACAT 59.764 40.000 11.90 11.90 39.98 3.21
321 322 4.567959 CGAAGAACATCTATGATGCACACA 59.432 41.667 7.39 0.00 0.00 3.72
322 323 4.025396 CCGAAGAACATCTATGATGCACAC 60.025 45.833 7.39 0.00 0.00 3.82
323 324 4.122046 CCGAAGAACATCTATGATGCACA 58.878 43.478 7.39 0.00 0.00 4.57
324 325 3.059325 GCCGAAGAACATCTATGATGCAC 60.059 47.826 7.39 2.88 0.00 4.57
325 326 3.133691 GCCGAAGAACATCTATGATGCA 58.866 45.455 7.39 0.00 0.00 3.96
326 327 3.133691 TGCCGAAGAACATCTATGATGC 58.866 45.455 7.39 0.00 0.00 3.91
327 328 5.236282 AGATGCCGAAGAACATCTATGATG 58.764 41.667 3.77 6.06 45.00 3.07
328 329 5.480642 AGATGCCGAAGAACATCTATGAT 57.519 39.130 3.77 0.00 45.00 2.45
329 330 4.944619 AGATGCCGAAGAACATCTATGA 57.055 40.909 3.77 0.00 45.00 2.15
330 331 4.813161 ACAAGATGCCGAAGAACATCTATG 59.187 41.667 5.97 8.89 45.69 2.23
331 332 5.028549 ACAAGATGCCGAAGAACATCTAT 57.971 39.130 5.97 0.00 45.69 1.98
332 333 4.471904 ACAAGATGCCGAAGAACATCTA 57.528 40.909 5.97 0.00 45.69 1.98
334 335 3.436704 TCAACAAGATGCCGAAGAACATC 59.563 43.478 0.00 0.00 39.88 3.06
335 336 3.411446 TCAACAAGATGCCGAAGAACAT 58.589 40.909 0.00 0.00 0.00 2.71
336 337 2.844946 TCAACAAGATGCCGAAGAACA 58.155 42.857 0.00 0.00 0.00 3.18
337 338 3.751621 CATCAACAAGATGCCGAAGAAC 58.248 45.455 0.00 0.00 46.90 3.01
347 348 2.366533 CAGCCTCTGCATCAACAAGAT 58.633 47.619 0.00 0.00 41.13 2.40
348 349 1.612462 CCAGCCTCTGCATCAACAAGA 60.612 52.381 0.00 0.00 41.13 3.02
349 350 0.809385 CCAGCCTCTGCATCAACAAG 59.191 55.000 0.00 0.00 41.13 3.16
350 351 0.609957 CCCAGCCTCTGCATCAACAA 60.610 55.000 0.00 0.00 41.13 2.83
351 352 1.001764 CCCAGCCTCTGCATCAACA 60.002 57.895 0.00 0.00 41.13 3.33
352 353 1.001641 ACCCAGCCTCTGCATCAAC 60.002 57.895 0.00 0.00 41.13 3.18
353 354 1.001764 CACCCAGCCTCTGCATCAA 60.002 57.895 0.00 0.00 41.13 2.57
354 355 0.909133 TACACCCAGCCTCTGCATCA 60.909 55.000 0.00 0.00 41.13 3.07
355 356 0.253044 TTACACCCAGCCTCTGCATC 59.747 55.000 0.00 0.00 41.13 3.91
356 357 0.921896 ATTACACCCAGCCTCTGCAT 59.078 50.000 0.00 0.00 41.13 3.96
357 358 0.698238 AATTACACCCAGCCTCTGCA 59.302 50.000 0.00 0.00 41.13 4.41
358 359 1.098050 CAATTACACCCAGCCTCTGC 58.902 55.000 0.00 0.00 37.95 4.26
359 360 2.787473 TCAATTACACCCAGCCTCTG 57.213 50.000 0.00 0.00 0.00 3.35
360 361 4.910304 AGATATCAATTACACCCAGCCTCT 59.090 41.667 5.32 0.00 0.00 3.69
361 362 5.234466 AGATATCAATTACACCCAGCCTC 57.766 43.478 5.32 0.00 0.00 4.70
362 363 6.959606 ATAGATATCAATTACACCCAGCCT 57.040 37.500 5.32 0.00 0.00 4.58
363 364 7.665559 TCAAATAGATATCAATTACACCCAGCC 59.334 37.037 5.32 0.00 0.00 4.85
364 365 8.621532 TCAAATAGATATCAATTACACCCAGC 57.378 34.615 5.32 0.00 0.00 4.85
442 443 3.369546 AACAAACCACATGCTACAAGC 57.630 42.857 0.00 0.00 42.82 4.01
443 444 4.917415 GCTAAACAAACCACATGCTACAAG 59.083 41.667 0.00 0.00 0.00 3.16
444 445 4.582656 AGCTAAACAAACCACATGCTACAA 59.417 37.500 0.00 0.00 0.00 2.41
445 446 4.141287 AGCTAAACAAACCACATGCTACA 58.859 39.130 0.00 0.00 0.00 2.74
446 447 4.766404 AGCTAAACAAACCACATGCTAC 57.234 40.909 0.00 0.00 0.00 3.58
447 448 6.885952 TTAAGCTAAACAAACCACATGCTA 57.114 33.333 0.00 0.00 0.00 3.49
448 449 5.782893 TTAAGCTAAACAAACCACATGCT 57.217 34.783 0.00 0.00 0.00 3.79
449 450 8.527567 TTTATTAAGCTAAACAAACCACATGC 57.472 30.769 0.00 0.00 0.00 4.06
464 465 9.640952 TGGCCTAACTTATTGATTTATTAAGCT 57.359 29.630 3.32 0.00 0.00 3.74
465 466 9.899226 CTGGCCTAACTTATTGATTTATTAAGC 57.101 33.333 3.32 0.00 0.00 3.09
470 471 9.700831 AGAAACTGGCCTAACTTATTGATTTAT 57.299 29.630 3.32 0.00 0.00 1.40
472 473 9.528489 TTAGAAACTGGCCTAACTTATTGATTT 57.472 29.630 3.32 0.00 0.00 2.17
473 474 9.700831 ATTAGAAACTGGCCTAACTTATTGATT 57.299 29.630 3.32 0.00 0.00 2.57
478 479 9.067986 GCAATATTAGAAACTGGCCTAACTTAT 57.932 33.333 3.32 0.00 0.00 1.73
479 480 8.050325 TGCAATATTAGAAACTGGCCTAACTTA 58.950 33.333 3.32 0.00 0.00 2.24
480 481 6.889722 TGCAATATTAGAAACTGGCCTAACTT 59.110 34.615 3.32 0.00 0.00 2.66
481 482 6.318900 GTGCAATATTAGAAACTGGCCTAACT 59.681 38.462 3.32 0.00 0.00 2.24
482 483 6.318900 AGTGCAATATTAGAAACTGGCCTAAC 59.681 38.462 3.32 0.00 0.00 2.34
483 484 6.423182 AGTGCAATATTAGAAACTGGCCTAA 58.577 36.000 3.32 0.00 0.00 2.69
484 485 6.001449 AGTGCAATATTAGAAACTGGCCTA 57.999 37.500 3.32 0.00 0.00 3.93
485 486 4.860022 AGTGCAATATTAGAAACTGGCCT 58.140 39.130 3.32 0.00 0.00 5.19
486 487 4.260784 CGAGTGCAATATTAGAAACTGGCC 60.261 45.833 0.00 0.00 0.00 5.36
487 488 4.332819 ACGAGTGCAATATTAGAAACTGGC 59.667 41.667 0.00 0.00 0.00 4.85
488 489 6.201044 CCTACGAGTGCAATATTAGAAACTGG 59.799 42.308 0.00 0.00 0.00 4.00
489 490 6.757010 ACCTACGAGTGCAATATTAGAAACTG 59.243 38.462 0.00 0.00 0.00 3.16
490 491 6.875076 ACCTACGAGTGCAATATTAGAAACT 58.125 36.000 0.00 0.00 0.00 2.66
491 492 6.979238 AGACCTACGAGTGCAATATTAGAAAC 59.021 38.462 0.00 0.00 0.00 2.78
492 493 7.108841 AGACCTACGAGTGCAATATTAGAAA 57.891 36.000 0.00 0.00 0.00 2.52
493 494 6.710597 AGACCTACGAGTGCAATATTAGAA 57.289 37.500 0.00 0.00 0.00 2.10
494 495 6.769341 TGTAGACCTACGAGTGCAATATTAGA 59.231 38.462 0.00 0.00 38.85 2.10
495 496 6.967135 TGTAGACCTACGAGTGCAATATTAG 58.033 40.000 0.00 0.00 38.85 1.73
496 497 6.947644 TGTAGACCTACGAGTGCAATATTA 57.052 37.500 0.00 0.00 38.85 0.98
497 498 5.847111 TGTAGACCTACGAGTGCAATATT 57.153 39.130 0.00 0.00 38.85 1.28
498 499 5.847111 TTGTAGACCTACGAGTGCAATAT 57.153 39.130 0.00 0.00 38.85 1.28
499 500 5.847111 ATTGTAGACCTACGAGTGCAATA 57.153 39.130 0.00 0.00 38.85 1.90
500 501 4.737855 ATTGTAGACCTACGAGTGCAAT 57.262 40.909 0.00 0.00 38.85 3.56
501 502 4.530710 AATTGTAGACCTACGAGTGCAA 57.469 40.909 0.00 0.00 38.85 4.08
502 503 4.530710 AAATTGTAGACCTACGAGTGCA 57.469 40.909 0.00 0.00 38.85 4.57
503 504 5.648572 ACTAAATTGTAGACCTACGAGTGC 58.351 41.667 0.00 0.00 38.85 4.40
504 505 6.034683 GCAACTAAATTGTAGACCTACGAGTG 59.965 42.308 0.00 0.00 40.77 3.51
505 506 6.098017 GCAACTAAATTGTAGACCTACGAGT 58.902 40.000 0.00 0.00 40.77 4.18
506 507 6.097356 TGCAACTAAATTGTAGACCTACGAG 58.903 40.000 0.00 0.00 40.77 4.18
507 508 6.028146 TGCAACTAAATTGTAGACCTACGA 57.972 37.500 0.00 0.03 40.77 3.43
537 538 9.874205 CTTAAATTGCTCTCCCATTATCAAAAA 57.126 29.630 0.00 0.00 0.00 1.94
538 539 9.034800 ACTTAAATTGCTCTCCCATTATCAAAA 57.965 29.630 0.00 0.00 0.00 2.44
539 540 8.469200 CACTTAAATTGCTCTCCCATTATCAAA 58.531 33.333 0.00 0.00 0.00 2.69
540 541 7.615365 ACACTTAAATTGCTCTCCCATTATCAA 59.385 33.333 0.00 0.00 0.00 2.57
541 542 7.118723 ACACTTAAATTGCTCTCCCATTATCA 58.881 34.615 0.00 0.00 0.00 2.15
542 543 7.573968 ACACTTAAATTGCTCTCCCATTATC 57.426 36.000 0.00 0.00 0.00 1.75
543 544 9.646522 ATTACACTTAAATTGCTCTCCCATTAT 57.353 29.630 0.00 0.00 0.00 1.28
545 546 7.961326 ATTACACTTAAATTGCTCTCCCATT 57.039 32.000 0.00 0.00 0.00 3.16
546 547 9.646522 AATATTACACTTAAATTGCTCTCCCAT 57.353 29.630 0.00 0.00 0.00 4.00
547 548 9.474313 AAATATTACACTTAAATTGCTCTCCCA 57.526 29.630 0.00 0.00 0.00 4.37
582 583 8.776119 AGGCACTGCTCTCCATAAATAATATAT 58.224 33.333 0.00 0.00 37.18 0.86
583 584 8.150827 AGGCACTGCTCTCCATAAATAATATA 57.849 34.615 0.00 0.00 37.18 0.86
584 585 7.025520 AGGCACTGCTCTCCATAAATAATAT 57.974 36.000 0.00 0.00 37.18 1.28
585 586 6.439636 AGGCACTGCTCTCCATAAATAATA 57.560 37.500 0.00 0.00 37.18 0.98
586 587 5.312079 GAGGCACTGCTCTCCATAAATAAT 58.688 41.667 0.00 0.00 41.55 1.28
587 588 4.708177 GAGGCACTGCTCTCCATAAATAA 58.292 43.478 0.00 0.00 41.55 1.40
588 589 3.243873 CGAGGCACTGCTCTCCATAAATA 60.244 47.826 0.00 0.00 41.55 1.40
589 590 2.484417 CGAGGCACTGCTCTCCATAAAT 60.484 50.000 0.00 0.00 41.55 1.40
590 591 1.134699 CGAGGCACTGCTCTCCATAAA 60.135 52.381 0.00 0.00 41.55 1.40
591 592 0.461548 CGAGGCACTGCTCTCCATAA 59.538 55.000 0.00 0.00 41.55 1.90
592 593 2.021068 GCGAGGCACTGCTCTCCATA 62.021 60.000 0.00 0.00 41.55 2.74
593 594 2.898738 CGAGGCACTGCTCTCCAT 59.101 61.111 0.00 0.00 41.55 3.41
594 595 4.074526 GCGAGGCACTGCTCTCCA 62.075 66.667 0.00 0.00 41.55 3.86
595 596 3.596066 TTGCGAGGCACTGCTCTCC 62.596 63.158 0.00 2.20 41.55 3.71
596 597 1.633852 CTTTGCGAGGCACTGCTCTC 61.634 60.000 0.00 5.36 41.55 3.20
597 598 1.670406 CTTTGCGAGGCACTGCTCT 60.670 57.895 0.00 0.00 41.55 4.09
598 599 2.684843 CCTTTGCGAGGCACTGCTC 61.685 63.158 0.00 0.00 41.55 4.26
599 600 2.670934 CCTTTGCGAGGCACTGCT 60.671 61.111 0.00 0.00 41.55 4.24
600 601 2.669569 TCCTTTGCGAGGCACTGC 60.670 61.111 1.16 0.00 45.87 4.40
601 602 0.037326 TAGTCCTTTGCGAGGCACTG 60.037 55.000 15.12 0.00 45.87 3.66
602 603 0.037232 GTAGTCCTTTGCGAGGCACT 60.037 55.000 1.16 8.13 45.87 4.40
603 604 0.320421 TGTAGTCCTTTGCGAGGCAC 60.320 55.000 1.16 1.92 45.87 5.01
604 605 0.037326 CTGTAGTCCTTTGCGAGGCA 60.037 55.000 1.16 0.00 45.87 4.75
605 606 0.741221 CCTGTAGTCCTTTGCGAGGC 60.741 60.000 1.16 0.00 45.87 4.70
607 608 0.741221 GCCCTGTAGTCCTTTGCGAG 60.741 60.000 0.00 0.00 0.00 5.03
608 609 1.295423 GCCCTGTAGTCCTTTGCGA 59.705 57.895 0.00 0.00 0.00 5.10
609 610 1.003839 TGCCCTGTAGTCCTTTGCG 60.004 57.895 0.00 0.00 0.00 4.85
610 611 0.250727 TGTGCCCTGTAGTCCTTTGC 60.251 55.000 0.00 0.00 0.00 3.68
611 612 1.523758 GTGTGCCCTGTAGTCCTTTG 58.476 55.000 0.00 0.00 0.00 2.77
612 613 0.034896 CGTGTGCCCTGTAGTCCTTT 59.965 55.000 0.00 0.00 0.00 3.11
613 614 0.830444 TCGTGTGCCCTGTAGTCCTT 60.830 55.000 0.00 0.00 0.00 3.36
614 615 0.830444 TTCGTGTGCCCTGTAGTCCT 60.830 55.000 0.00 0.00 0.00 3.85
615 616 0.034337 TTTCGTGTGCCCTGTAGTCC 59.966 55.000 0.00 0.00 0.00 3.85
616 617 1.873698 TTTTCGTGTGCCCTGTAGTC 58.126 50.000 0.00 0.00 0.00 2.59
617 618 2.335316 TTTTTCGTGTGCCCTGTAGT 57.665 45.000 0.00 0.00 0.00 2.73
633 634 8.966868 TGGCGAATTCCTTCTTAGATTATTTTT 58.033 29.630 0.00 0.00 0.00 1.94
634 635 8.519799 TGGCGAATTCCTTCTTAGATTATTTT 57.480 30.769 0.00 0.00 0.00 1.82
635 636 8.519799 TTGGCGAATTCCTTCTTAGATTATTT 57.480 30.769 0.00 0.00 0.00 1.40
636 637 8.519799 TTTGGCGAATTCCTTCTTAGATTATT 57.480 30.769 0.00 0.00 0.00 1.40
637 638 8.519799 TTTTGGCGAATTCCTTCTTAGATTAT 57.480 30.769 0.00 0.00 0.00 1.28
638 639 7.931578 TTTTGGCGAATTCCTTCTTAGATTA 57.068 32.000 0.00 0.00 0.00 1.75
639 640 6.834168 TTTTGGCGAATTCCTTCTTAGATT 57.166 33.333 0.00 0.00 0.00 2.40
640 641 6.208599 TGTTTTTGGCGAATTCCTTCTTAGAT 59.791 34.615 0.00 0.00 0.00 1.98
641 642 5.533154 TGTTTTTGGCGAATTCCTTCTTAGA 59.467 36.000 0.00 0.00 0.00 2.10
642 643 5.768317 TGTTTTTGGCGAATTCCTTCTTAG 58.232 37.500 0.00 0.00 0.00 2.18
643 644 5.776173 TGTTTTTGGCGAATTCCTTCTTA 57.224 34.783 0.00 0.00 0.00 2.10
644 645 4.664150 TGTTTTTGGCGAATTCCTTCTT 57.336 36.364 0.00 0.00 0.00 2.52
645 646 4.664150 TTGTTTTTGGCGAATTCCTTCT 57.336 36.364 0.00 0.00 0.00 2.85
646 647 5.230182 AGATTGTTTTTGGCGAATTCCTTC 58.770 37.500 0.00 0.00 0.00 3.46
647 648 5.213891 AGATTGTTTTTGGCGAATTCCTT 57.786 34.783 0.00 0.00 0.00 3.36
648 649 4.871933 AGATTGTTTTTGGCGAATTCCT 57.128 36.364 0.00 0.00 0.00 3.36
649 650 6.386654 TCTTAGATTGTTTTTGGCGAATTCC 58.613 36.000 0.00 0.00 0.00 3.01
650 651 7.062255 CCTTCTTAGATTGTTTTTGGCGAATTC 59.938 37.037 0.00 0.00 0.00 2.17
651 652 6.868339 CCTTCTTAGATTGTTTTTGGCGAATT 59.132 34.615 0.00 0.00 0.00 2.17
652 653 6.208599 TCCTTCTTAGATTGTTTTTGGCGAAT 59.791 34.615 0.00 0.00 0.00 3.34
653 654 5.533154 TCCTTCTTAGATTGTTTTTGGCGAA 59.467 36.000 0.00 0.00 0.00 4.70
654 655 5.067273 TCCTTCTTAGATTGTTTTTGGCGA 58.933 37.500 0.00 0.00 0.00 5.54
655 656 5.371115 TCCTTCTTAGATTGTTTTTGGCG 57.629 39.130 0.00 0.00 0.00 5.69
656 657 7.116805 CACATTCCTTCTTAGATTGTTTTTGGC 59.883 37.037 0.00 0.00 0.00 4.52
657 658 8.359642 TCACATTCCTTCTTAGATTGTTTTTGG 58.640 33.333 0.00 0.00 0.00 3.28
658 659 9.185192 GTCACATTCCTTCTTAGATTGTTTTTG 57.815 33.333 0.00 0.00 0.00 2.44
659 660 8.912988 TGTCACATTCCTTCTTAGATTGTTTTT 58.087 29.630 0.00 0.00 0.00 1.94
660 661 8.463930 TGTCACATTCCTTCTTAGATTGTTTT 57.536 30.769 0.00 0.00 0.00 2.43
661 662 7.175641 CCTGTCACATTCCTTCTTAGATTGTTT 59.824 37.037 0.00 0.00 0.00 2.83
662 663 6.656693 CCTGTCACATTCCTTCTTAGATTGTT 59.343 38.462 0.00 0.00 0.00 2.83
663 664 6.176183 CCTGTCACATTCCTTCTTAGATTGT 58.824 40.000 0.00 0.00 0.00 2.71
664 665 5.587844 CCCTGTCACATTCCTTCTTAGATTG 59.412 44.000 0.00 0.00 0.00 2.67
680 681 0.669318 TTTCGTGATCGCCCTGTCAC 60.669 55.000 0.00 0.00 40.94 3.67
693 694 4.516092 AAACGACTGAGAAACTTTCGTG 57.484 40.909 0.00 0.00 41.85 4.35
708 709 4.145997 CGTACTTATGCAACCAAAACGAC 58.854 43.478 0.00 0.00 0.00 4.34
722 723 2.551032 TCGTGATCATCCGCGTACTTAT 59.449 45.455 4.92 0.00 40.53 1.73
725 726 0.029035 GTCGTGATCATCCGCGTACT 59.971 55.000 4.92 0.00 40.53 2.73
729 730 1.946156 CCTGTCGTGATCATCCGCG 60.946 63.158 0.00 0.00 40.97 6.46
776 777 0.485543 TCCCAGAGTGACACAGGGTA 59.514 55.000 22.54 11.92 40.48 3.69
783 790 1.420138 GTTTCCCTTCCCAGAGTGACA 59.580 52.381 0.00 0.00 0.00 3.58
930 1104 3.076032 AGGTTTGGAGCTAGGAAATGGTT 59.924 43.478 0.00 0.00 0.00 3.67
934 1108 4.593956 CTTGAGGTTTGGAGCTAGGAAAT 58.406 43.478 0.00 0.00 32.79 2.17
999 1173 1.124477 AGGAGGCGAGGGAATCCATC 61.124 60.000 3.48 3.48 34.08 3.51
1143 1317 4.599241 CCATGGTGGAGAAATATACCTCCT 59.401 45.833 18.63 2.50 46.94 3.69
1358 1532 0.109919 GCCCGCCAAAAACTACTTCG 60.110 55.000 0.00 0.00 0.00 3.79
1372 1546 0.039527 ACTTCATTTTCGTTGCCCGC 60.040 50.000 0.00 0.00 36.19 6.13
1377 1551 4.917415 GGATCAACCACTTCATTTTCGTTG 59.083 41.667 0.00 0.00 38.79 4.10
1389 1563 4.145052 GTCAAAAGGAAGGATCAACCACT 58.855 43.478 0.00 0.00 42.04 4.00
1403 1577 3.370978 ACATGATAGCGAACGTCAAAAGG 59.629 43.478 0.00 0.00 0.00 3.11
1408 1582 2.540157 CGGTACATGATAGCGAACGTCA 60.540 50.000 16.62 0.00 40.41 4.35
1443 1617 7.116376 CAGATTACAACTGACACAGACGTAAAT 59.884 37.037 15.34 9.08 36.31 1.40
1445 1619 5.918576 CAGATTACAACTGACACAGACGTAA 59.081 40.000 5.76 11.29 36.72 3.18
1447 1621 4.202121 ACAGATTACAACTGACACAGACGT 60.202 41.667 5.76 0.00 38.55 4.34
1448 1622 4.299155 ACAGATTACAACTGACACAGACG 58.701 43.478 5.76 0.00 38.55 4.18
1479 1653 6.849502 AGCTGACAAATGACACAATTGATAG 58.150 36.000 13.59 4.15 29.90 2.08
1485 1659 5.300034 TCTCAAAGCTGACAAATGACACAAT 59.700 36.000 0.00 0.00 0.00 2.71
1486 1660 4.639755 TCTCAAAGCTGACAAATGACACAA 59.360 37.500 0.00 0.00 0.00 3.33
1487 1661 4.198530 TCTCAAAGCTGACAAATGACACA 58.801 39.130 0.00 0.00 0.00 3.72
1497 1671 6.207614 AGGAAATTAAACCTCTCAAAGCTGAC 59.792 38.462 0.00 0.00 0.00 3.51
1509 1683 7.295340 ACTACAGTTGGAAGGAAATTAAACCT 58.705 34.615 0.00 0.00 38.23 3.50
1510 1684 7.520451 ACTACAGTTGGAAGGAAATTAAACC 57.480 36.000 0.00 0.00 0.00 3.27
1513 1687 9.802039 AACATACTACAGTTGGAAGGAAATTAA 57.198 29.630 0.00 0.00 0.00 1.40
1515 1689 8.576442 CAAACATACTACAGTTGGAAGGAAATT 58.424 33.333 0.00 0.00 0.00 1.82
1516 1690 7.724061 ACAAACATACTACAGTTGGAAGGAAAT 59.276 33.333 0.00 0.00 0.00 2.17
1584 1765 1.452108 GGCATACACACAGGCTCCC 60.452 63.158 0.00 0.00 0.00 4.30
1590 1771 0.110238 GCACAACGGCATACACACAG 60.110 55.000 0.00 0.00 0.00 3.66
1633 1814 6.627087 TCATATAGATCAGATCCCCCAAAC 57.373 41.667 6.80 0.00 0.00 2.93
1674 2390 8.506437 TCTTCTACAACAGCAACTTCATATTTG 58.494 33.333 0.00 0.00 0.00 2.32
1675 2391 8.621532 TCTTCTACAACAGCAACTTCATATTT 57.378 30.769 0.00 0.00 0.00 1.40
1676 2392 8.621532 TTCTTCTACAACAGCAACTTCATATT 57.378 30.769 0.00 0.00 0.00 1.28
1677 2393 7.148340 GCTTCTTCTACAACAGCAACTTCATAT 60.148 37.037 0.00 0.00 0.00 1.78
1678 2394 6.147821 GCTTCTTCTACAACAGCAACTTCATA 59.852 38.462 0.00 0.00 0.00 2.15
1679 2395 5.049129 GCTTCTTCTACAACAGCAACTTCAT 60.049 40.000 0.00 0.00 0.00 2.57
1680 2396 4.273480 GCTTCTTCTACAACAGCAACTTCA 59.727 41.667 0.00 0.00 0.00 3.02
1681 2397 4.273480 TGCTTCTTCTACAACAGCAACTTC 59.727 41.667 0.00 0.00 37.54 3.01
1682 2398 4.199310 TGCTTCTTCTACAACAGCAACTT 58.801 39.130 0.00 0.00 37.54 2.66
1683 2399 3.808728 TGCTTCTTCTACAACAGCAACT 58.191 40.909 0.00 0.00 37.54 3.16
1686 2402 3.555795 CCTCTGCTTCTTCTACAACAGCA 60.556 47.826 0.00 0.00 38.16 4.41
1687 2403 2.999355 CCTCTGCTTCTTCTACAACAGC 59.001 50.000 0.00 0.00 0.00 4.40
1691 2990 2.902608 TCCCCTCTGCTTCTTCTACAA 58.097 47.619 0.00 0.00 0.00 2.41
1728 3032 2.744202 GAGCACATTACAACACTGGAGG 59.256 50.000 0.00 0.00 0.00 4.30
1730 3034 2.412870 CGAGCACATTACAACACTGGA 58.587 47.619 0.00 0.00 0.00 3.86
1732 3036 1.135972 GCCGAGCACATTACAACACTG 60.136 52.381 0.00 0.00 0.00 3.66
1733 3037 1.156736 GCCGAGCACATTACAACACT 58.843 50.000 0.00 0.00 0.00 3.55
1737 3053 0.676466 CCAGGCCGAGCACATTACAA 60.676 55.000 0.00 0.00 0.00 2.41
1793 3109 7.833285 AATAGCAAACCTGTTCTTTTAAGGA 57.167 32.000 0.00 0.00 34.97 3.36
1802 3118 6.259550 AGATGTGAAATAGCAAACCTGTTC 57.740 37.500 0.00 0.00 0.00 3.18
1936 3259 4.202223 ACAAAAAGACACGAAGCTCCTAGA 60.202 41.667 0.00 0.00 0.00 2.43
1937 3260 4.058817 ACAAAAAGACACGAAGCTCCTAG 58.941 43.478 0.00 0.00 0.00 3.02
2117 3443 1.067199 GCACGCGAATGGCTCAAAAG 61.067 55.000 15.93 0.00 40.44 2.27
2122 3450 2.099062 CAAGCACGCGAATGGCTC 59.901 61.111 15.93 0.00 40.44 4.70
2164 3569 5.934043 CGATGAGGCAAGAATATGTGGATAA 59.066 40.000 0.00 0.00 0.00 1.75
2171 3576 6.260936 AGGTAAAACGATGAGGCAAGAATATG 59.739 38.462 0.00 0.00 0.00 1.78
2172 3577 6.357367 AGGTAAAACGATGAGGCAAGAATAT 58.643 36.000 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.