>input_sequence_82502
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-----------------------------------------------------ATGGATTCCCTCGCCTCCTTGATCAAC
CTCGCCGCCTTGATCTCTGGCGCCTGCCGCGACGCGGAGATGCTGCCGGGTGCGCTCATCTCCTGTGGCGTCCTTGAAGC
AGCCGCAGCGCTCTGCCTCGTCATCTCCAGAGCGCCAGGAGGTATATTTCTCCACCATGGCAGAGCACCCTTCTTCCTGT
ACTACGGCATCCTCGTCGCAGTGGTGATCTTCGGGCTCCTCGAGGCGTCCGCCGGCTTCTGGGTGTCAGCCGATGTGGTC
GGACGACGTGCCGTCGGGAAGACGATCCTGTGGCTGGGCCTCCTGCCCATTGTCTTCGTGGCTGCGCTTGGAGGCTTTGT
GATTCTGAAAACGAAGTAG-------------------------------------------------------------
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>chr2B_1_TraesCS2B01G488500
GTGGTGCTCTATTGAGTACCGGGTCGTGTTTTCCAGGGTGAAAATCTAAGGTCTGGCCTTTTTTGGTTGTGCCTAGCAAT
GGCCTTGTTGAAGGCATTGTTTTGGGAACACGGTCTTTCTCCAGGGTGAAAACCTACGATCTTTGATCGGGCAACGACAA
TGTTTGTGCATTGTTTCCTTCTTGAAGGCGTTGTTTTTGGAGAAACTTCTTTCTAGTCCGGGTGTTGTCTTTGGCAGTAG
TTAGAGGGCTACTACTGCTGGTGATTAACCACCGTGGCAGGGTCATTTTTTTCTCTTTTTTCCACTATGTGTTTTTTTGG
ATGTGTGCATCATAGATGTTCTTCGGCATCTTGTTGATGCAGAGGCTGGGTGTAATTGATATCTATTTGATATTAATATA
TTCTCCTTTTCAAAAAAAATAGGGGGCTTAAGATTTTTTTATGCTTGTAGCATGTGGTTTGTTTAGCTTAATAAATCAAT
AAGTTAGGCCAGTTTCTAATATTGCACTCGTAGGTCTACAATTTAGTTGCAGTAGTTTTTTTGATAATGGGAGAGCAATT
TAAGTGTAATATTTTAGTTCATATATATTATTTATGGAGAGCAGTGCCTCGCAAAGGACTACAGGGCACACGAAAAAATA
ATCTAAGAAGGAATTCGCCAAAAACAATCTAAGAAGGAATGTGACAGGGCGATCACGAAAGTTTCTCAGTCGTTTTGGTT
GCATAAGTACGCGGATGATCACGACAGGGGGAGCACAGCGAAGAGTACCCAGCCAGTA------CCCTGTGTCACTCTGG
GAAGGGAAA-----------------------------------------------------------------------
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-------------CCAAATGGCTTGGTTCGGTTCTTTCGGTTTCGGTTCTGGCTTGTGGCAAGGACTGCAAAAGTCACAT
AATACTAGTGGGTTTGAATTCTCTCCACTTTGTCGCGC---TTCCTCCTCCTTATATAATCCCAACCATTTCCTAGCTCC
AAACCTCAAGCCAAGCTCGCTCATAGCTCCACAGCACACACACGAGACGTGCGATGGATTCCCTCGCCTCCTTGATCAAC
CTCGCCGCCTTGATCTCTGGCGCCTGCCGCGACGCGGAGATGCTGCCGGGTGCGCTCATCTCCTGTGGCGTCCTTGAAGC
AGCCGCAGCGCTCTGCCTCGTCATCTCCAGAGCGCCAGGAGGTATATTTCTCCACCATGGCAGAGCACCCTTCTTCCTGT
ACTACGGCATCCTCGTCGCAGTGGTGATCTTCGGGCTCCTCGAGGCGTCCGCCGGCTTCTGGGTGTCAGCCGATGTGGTC
GGACGACGTGCCGTCGGGAAGACGATCCTGTGGCTGGGCCTCCTGCCCATTGTCTTCGTGGCTGCGCTTGGAGGCTTTGT
GATTCTGAAAACGAAGTAGTTTTTGGCGGGCAACGAAAATGAAGTGGTTGATCCTTCCTTTTGACGTTCGCTATCATGTA
CCGATGTTGTTGTAATATTTACGTCTGTGTCAGTTGTAATCTGTTTGTTTGTCTATCAATTGTGTCATTTGTCAGCTTTG
AGAGGTTTAATTTCCTTCCAACTGTAGTATGTTTGTGGTGATGATATTTGGGT-------CTGTAATTAATAATAATGAA
ATAAGGGAGCCTGTGTGTATGCCGTTGTGCGTTCAACCAATATGAAATTGTTGGTTTGGGGGATCTGATCTATATGAAGT
TGCT----------------------------------------------------------------------------
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-----------------------------------------------------------TTTTTTTAGGCAAATATGAAG
TTG-----------------------------------------------------------------------------
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--------------------------CTGTTGTAGAAGAAGCAGAGGGGAACGA-----TTCGTCCGGTACCCTCCA---
---------GTGTTGTAATGTGCTCGGCCTGGTCCATTCCATTAAATTTCTGGGCCAAACTTGCGGTATCCTTAAAAG-A
ACAGGTTTGCTATTTCACATCTAGATGTGAAATAACTATCTCACATCTAACTTTCTAGCCAT---CTAGATGTGAAATAA
CTATCTCACATCTAAGATTCGTGATTTTTGCCTTCTCTTCTTCGTGTCTTGT---TTTTCTAGGAGCTTCGTGTCTTTTT
GTTTGTCAAGACGCGTGCGTAATAA-TTTTTTGTTGCCTGGGCCGCTTCGCGTTATAGCTGCCAGCTTTGCTTTGCCTGG
GCCGCTCCTATTGTGGAATTTT--TTCCATCGATTTTTTGTGTGTGCCGGTCTCCTGTAGTCTTTAGAGCTGGTTGTCTT
TTCTTT--TG-AGCCATTCGCGTGCTTGTGCTGTGGAAACAAGG------------------------------------
----------------------------------------CGTCATGTTTATCCACATATTCTTGCCTCATCGTTTTACC
TTT----------TTTTTTGTTTCATTATTTGTTTTAAATTATGAAGTATTTTAATAACTCATGATCTTTTGTCTTTTAT
TTATATT-------------------TATTTTTTGTTTTATTTTTTCTTTTTTTAATTTATGAATTTTCACTCAGCCATC
TTTTTGCTTTAAATGTCATGCAAATCTTGATCAAGAGTT
>chr2B_660
AAAGAAT-------------------------------------------------------------------------
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-------------------------AATCTAAGAAGGAATATGACAGGGCGATTACGAAAGTTTCTCAATCGTTTTGGTT
GCTTACGTAGGCGGATGATCACGACAGGGGGAGCACAGCGAAGAGTACCCGGGCAGCACCCTGTCCCTGCGTCACTCTGG
GAACGGAAAACCACAGTTCCGAGAATAATCTAAGAAGGAAAAAAAATCTAAGAAGGAATGTGACAGGGCGATCACGAAAA
TTTCTCAGTCCTTTTGGTTGCTTACGTACGCGGATGATCACGACAGGGGGAGCATAGAGTACCCAGCACCCGTGTCACTC
TGGGAACGGAAAACCAAATGGCTCAGTTCGGTTCTTTCGGTTTCGGTTCTGGCTTCGCG---------------------
-------GTGGGTTTGAAATCTCTCCACTTTGTCGCGCGTCTTCCTCCTCCTTATATAATCCCCATCTTTTCCTAGCTCT
AAACCTCAAGCCAAGCTCGCTCATAGCTCCACAGCACACA--CGAGACGTGCAATGTATTCCCTCGCCTCCTTGATCAAC
CTCGCCGCCTTGATCTCCGAAGCCTGCCGCGACGCGGAGATGCTGCCGGGTGCGCTCATCTCCTGCGGCGTCCTCGAAGC
AGCCGCAGCCCTCTGCCTCGTCATCTCCAGAGCGCCGGGAGGTATATTTCTCCACCATGGCAGAGCACCCTTCTTCCTGT
ACTACGGCATCCTCGTCGCAGTGGTGATCTTCGGGCTCCTCGAGGCGTCGGCCGGCTTCTGGGTGTCAGGCGATGTGGTC
GGACGGCGTGCCGTCGGGAAGACGGTCCTCTGGCTGGGCCTCCTGCCCATCGTCTTCGTGGCTGCGCTTGGAGGCTCTGT
CATTCTCAACAAGAAATAGTT-----------------------------------------------------------
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>chr2A_791
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----------------------------------------------------------------------------CTGG
GAAGGGAAA-----------------------------------------------------------------------
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-------------CCAAATGGCTTGGTTCGGTTCTTTCGGTTTCGGTTCTGGCTTGTGGCAAGGACTGCAAAAGTCACAT
AATACTAGTGGGTTTGAATTCTCTCCACTTTGTCGCGCGTCTTCCTCCTCCTTATATAATCCCCACCTTTTCCTAGCTCC
AAACCTCAAGCCAAGCTCGCTCATAGCTCCACAGCCCACACACGAGACGTGCAATGGATTCCCTCGCGTCCTTGATCAAC
CTCGCCGCCTTGATCCCCGGCGCCTGCCGCGACGCGGAGATGCTGCCGGGTGCGCTCATCTCCTGTGGCGTCCTCGAGGC
AGCCGCAGCGCTCTGCCTCGCCATCTCCAGAGCGCCCGGAGGTATATTTCTCCACCATGGCAGAGCACCCTTCTTCCTGT
ACTACGGCATCCTCGTCGCCGTGGTGATCTTCGGGCTCCTCGAGGCGTCGGCCGGCTTCTGGGTGTCAGGCGATGTGGTC
GGACGGGGTGCCGTCGAGAAGACGATGCTGTGGCTGGGCCTCCTGCCCATCGTCTTCGTGGCTGCGCTTGGAGGCTTTGT
GATTCTGAAAATGAAGTAGTTTTTGACGGGTAACGAAAATGATGTGGTTGATCCTTGCTTTCGACGTTCGCTATCATGTA
CCGATGTTGTTGTAATCTGTTAGTCTGTGTCAGTTGTAATCTGTTTGTTTGTGTATCAGCGGTGTCATTTATCAGCTTTG
AGGTTTAT--TTTCCTTCCAACTGTAGTATGTTTGTGGAGATGATATTTGGGTTATTGCGCTGTAACTAATAATAATGAA
ATAACGGAGCTTGTGTGTATGTCGTTGTGCGTTCGACCAATATGAAATTGTTGTTTTGGGGGATCTGATCTCAGAGACGG
AGCCAGGATTCAAACATAGGGGGGCGGACAAAGTTTTGCCTCTAATGTAGAGACTCGTAAAGAAACATACAAAGACAATC
TACATTTTTTTTGTGAGGGAGACAGCCTAAATCTTCATCAAAACATGTGTCTTCTGTGATCAATTTCAATTTTTTTCTCG
AAATTTATCATAAAGAAAATGCAAAATCAACTCATGTGTTAATTAATCTAAATCTTTCAGTACATGATGTGATAAACAAT
GCAAAACCTTGTCCTATGGGTAAACCGGTAAAGGGATATATTCCCTAATTAATCTTTCATTCTTATATAGTAACCACAGT
TCGAATTGTGAGGTTCTAAAGGCATGAATTAATAGAATAACTAACGAGACTAACCTTAACCCCCTTTTCCTTGCTCGCCG
CTTCTCAATATGGTCGCGGCCGGCCGGCCGGCCGCGCGTCCTTGCAAGGATGGCCCTCGGCCCTCATCAGCACATACACG
CCCTCTTGCGCGCAAGGATCGTCGGCTCAGGCTCATTGAAACGCCGCTGGTCAAGAACATTTTTTTAGGGTTGGCGCTCG
TCAAGAACTGCCCTAGACGGCTATCATCGATAGGCATCGCACGCAAGAAAAACAAACGATCTTGATCTGATCTTGTCCCT
TTTGTTGGGCTACTGCTGCAGGTGTGCTAAAGATGGGCTTGGTGATTTTGTTGGGCTTCACGTGGTGAGGGGGGGCGCTA
TTAGCAAAATAGTCACTTTTTCCTGCCGGGCTGCTAATCGCCAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNATATGAATTGCTGCCTGCTGTAGAAGAAGCAGAGGGGAACGAATTAGTTCGTCCGGTACTCCCTCTCC
CTCCCCAGTGTGCTGTAATGTGCTCGGCCTGGTCCATTCCATTAAATTTCTGGGCCAAACTTGCGGTAGCCTTAAAAA-A
AC------------------------------------------------------------------------------
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>chr3A_1796
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----------------------------------------------------------------------CTTAAAAAAA
ACAGGTTTGCTATTTCACATCTAGATGTGAAATAACTATCTCACATCTAACTTCCTAGCCAT---ATATAGCATAT----
------------TAAGATTCGTGAATTTTGCCTTCGCTTCTTCGTGTCTTGTTTATTT--TAGGAGCTTCGTGTCTTTCT
GTTTGTCAAGACGCGTGCGTAACAAC-TTTTTGTTGCCTAGGCCGCTTCGCGTTATAACTGCCAGCTTTGCTTTGCCTGG
GCTGCTCCTATTGTGGAATTTT--TTCCATCGATTTTTTGTGTGTGCCGGTCTCCTGTAGTCTTTAGAGCTGGTTGTCTT
TT-TTT--TT-AGCCATTCGCGTGCTTGTGCTGTGGAAACAAGG------------------------------------
----------------------------------------CATCATGTCTTTCCATTTATTTTTGCCTCGTCGTTTTACT
TTTTTATTTTCA-TTTTTTGTTTCTTTATTTGTTTTAAATTATGAAGTATTTTAT--ACTCATGATCTTTTGTCTTTTAT
TTATATT-------------------TATTTTTTCT----TTTTTTCTTTTTTTAATTTATGAATTTTCACTCAGCCATC
TTTTCTCTTTAAATGTCATGCAAATCTTGATCAAGAGTT
>chr6B_1804
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-------------------------------------------------------------------------------A
ACAGGTTTGCTATTTCACATCTAGATGTGAAATAACTATCTCACATCTAACTTTCTAGCCATT---TAGATGTGAAATAA
CTATCTCACATCTAAGATTCGTGATTTTTGCCTTCTCTTCTTCGTGTCTTTT---TTT--TAGGAGCTTCGCGTCTTTCT
GTTTGTCAAGACGCGTGCGTACCAAC-TTTTTGTTGCCTGGGCCGCTTCGCGTTATAGCTGACAGCTTTGCTCTGCCTGG
GCCGCTCCTATTGTGGAATTTTTTTTCCATCGATTTTTTGTGTGTGTCGGTCTCCTGTAGTCTTTAGAGCTGGTCGTCTT
TT-CTT--TTGAGCCATTCGCGTGCTTGTGCTGTGGAAACAAGG------------------------------------
----------------------------------------GGTCATGTCTATCCATTTATTCTTGCCTCGTCGTTTTACT
TTTTTGTTTTTATTTTTTTGTTTCATTATTTGTTTTAAATTATGAAGTATTTTAT--ACTCATGATCTTTTGTCTTTTAT
TTATATT-------------------TATTTTTTGTTTTCTTTTTTATTTTTTAAATTTATGAATTTTGACTCAGCCATC
TTTTTGCTTTAAATGTCATGCAAATCTTGATCAAGAGTT
>chr3D_1804
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-------------------------------------------------------------------------------A
ACAGGTTTGCTATTTCACATCTAGATGTGAAATAATTATCTCACATCTAACTTCCTAGCCATTAGATATAGCATAT----
------------TAAGATTCGTGATTTTTGCCTTCGCTTCTTCGTGTCTTGTTTTTTT--TAGGAGCTTCGTGTCTTTTT
GTTTGTCAAGACGCGTGCGTAACAACTTTTTTGTTGCCTGGGCCGCTTCGCGTTATAGCTGCCAGCTTTGCTTTGCCTGG
GCCGCTCCTATTGTGGAATTTT--TTCCATCGATTTATTGTGTGTGCCGGTCTCCTGTAGTCTTTAGAGCTGGTTGTCTT
TT-TTTTTTTGAGCCATTCGCGTGCTTGTGCTCTGGAAATAAGG------------------------------------
----------------------------------------CGCCATGTCTTTCCATTTATTTTTGCCTCGTCGTTTTACC
TTTTTATTTTTATTTTTTTGTTTCATTATTTGTTTTAAATTATGAAGTATTTTAT--ACTCATGATCTTTTGTCTTTTAT
TTATATT-------------------T-------------------CTTTTTTTAATTTATGAATTTTCACTCAGCCATC
TTTTCGCTTTAAATGTCATGCAAATCTTGATCGAGAGTT
>chr1B_1806
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-CAGATTTGCTATTTCACATCTAGATATGAAATAACTATCTCACATCTAACTTCCTAGCCATTAGATATAGCATAT----
------------TAAGATTCGTGATTTTTGCCTTCGCTTCTTCGTATCTG--TTTTTT--AAGGAGC-TCGTGTCTTTTT
GTTTGTCAAGACGCGTGCGTAACAACTT-TTTGTTGCCTGGGCCGCTTCGCGTTATAGCTGCCAGCTTTGCTTTCCCTGG
GCTGCTCCTATTGTGGAATTTT--TTCCATCAATTTTTTGTGTGTGCCGGTCTCCTGTAGTCTTTAGAGCTGGTTGTCTT
TT-C--TTTTGAGCCATTTGCGTGCTTGTGCTGTGGAAACAAGG------------------------------------
----------------------------------------CGTCATGTCTATCCATTTATTCTTCCCTCGTCGTTTTAC-
-------------TTTTTTGTTTCATTATTTGTTTTAAATCATGAAGTATTTTAT--ACTCATGATCTTTTGTCTTTTAT
TTATATTTATTTTTTGTTTTCTTTTTT-------------------CTTTTTTTAATTTATGAATTTTCACTCAGCCATC
TTTTCACTTTAAATGTCATGCAAATCTTGATCAAGAGTT
>chr5B_1834
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-----------------------------AAATAACTATCTCACATCTAACTTCCTAGCCATTAGATATAGCATAT----
------------TAAGATTCATAACTTTTGCTTTCGCTTCTTCGTGTCTTGTTTTTTG--TAGGAGCTTCGTGTCTTTTT
GTTTGTCAAAATGCGTGCATAATAACTT-TTTGTTGCCTGGGCCGCTTCGCGTTATAGCTGCCAGCTTTGCTTTGCCTGG
GCCGCTCCTACTGTGGAATTTT--TTCCATCGACTTTTTGTGTGTACCGGTCTCCTGTAGTCTTTAGAGCTGGTTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCATGTCTATCCATTTATTCTTGCCTCGTTGTTTTACT
TTTTTGTTTTTA-TTTTTTGTTTCATTATTTGTTTTAAATTATGAAGTATTTTAT--ACTCATGATCTTTTGTCTTTTAT
TTATATT-ATTTTTTGTTTTCTTTTTT-------------------CTTTTTTTAATTTATGAATTTTCACTCAGCCATC
TTTTCGCTTTAAATGTCATGCAAATCTTGATCAAGAGTT
>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---------------S------------S--------------S-----------
--S--S---S----------------------------------------S-S---S------------S----------
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---------------------------------------------------------------S---S------------
----------------------------------------------------S---------------------------
-----------------S--------------------------------------------------------S-----
------------------------------------S-------------------------------------------
-------------------------------------------------S-------------------S----------
-----S--------------------------------------------S-----------------------------
-----------S-------------S----S-----------S-------------S----S------------------
----------------S-S-SS------------------------------S-----SSS---------S---------
--SSS-S-SS----------------------------S---------------------------S-------------
----S-----S----------S------------S------------------S-----------------SSSS--S-S
S--S----------------------------------------------------------------------------
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---------------------------------------------------------------------SSSSSSSSSS-
-SS-----------------------------------------------------------------------------
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-----------------------------S-----------------------------------------S-S-SS---
------------S-------------------------------------------------------S--------S--
-----------------------------------------------------------------S--------------
----------------------------------------------------------SS--------------------
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--S------S----------------------------------------------------------------------
------------------------------------------------S------SS------------S----------
------------------------------------------------------SSS-----------------------
---------------------------------------S----------------------------------------
---------------------------------------
>forward_36
----------------TACCGGGTCGTGTTTTCCAG--------------------------------------------
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>reverse_1546
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-------------------------GCGGGCAACGAAAATGAAGT-----------------------------------
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