Multiple sequence alignment - TraesCS2B01G485900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G485900 chr2B 100.000 2491 0 0 1 2491 683031830 683029340 0.000000e+00 4601
1 TraesCS2B01G485900 chr2A 94.153 2001 86 17 519 2491 709838718 709836721 0.000000e+00 3018
2 TraesCS2B01G485900 chr2A 94.131 443 24 2 89 530 709840208 709839767 0.000000e+00 673
3 TraesCS2B01G485900 chr2D 94.489 1887 74 15 632 2491 571082514 571080631 0.000000e+00 2881
4 TraesCS2B01G485900 chr4A 90.526 95 7 2 1 93 641453634 641453728 9.350000e-25 124
5 TraesCS2B01G485900 chr4A 91.954 87 7 0 1 87 578768235 578768321 3.360000e-24 122
6 TraesCS2B01G485900 chr7D 91.111 90 7 1 1 89 134197168 134197079 1.210000e-23 121
7 TraesCS2B01G485900 chr7D 91.111 90 7 1 1 89 593250610 593250521 1.210000e-23 121
8 TraesCS2B01G485900 chr6D 91.111 90 7 1 1 89 14615746 14615657 1.210000e-23 121
9 TraesCS2B01G485900 chr6D 91.111 90 7 1 1 89 56018767 56018856 1.210000e-23 121
10 TraesCS2B01G485900 chr6D 91.011 89 8 0 1 89 471483720 471483632 1.210000e-23 121
11 TraesCS2B01G485900 chr5D 91.011 89 8 0 1 89 129239087 129238999 1.210000e-23 121
12 TraesCS2B01G485900 chr1D 91.111 90 6 2 1 89 369939506 369939418 1.210000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G485900 chr2B 683029340 683031830 2490 True 4601.0 4601 100.000 1 2491 1 chr2B.!!$R1 2490
1 TraesCS2B01G485900 chr2A 709836721 709840208 3487 True 1845.5 3018 94.142 89 2491 2 chr2A.!!$R1 2402
2 TraesCS2B01G485900 chr2D 571080631 571082514 1883 True 2881.0 2881 94.489 632 2491 1 chr2D.!!$R1 1859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.039798 CATCAACGGCTATGGCATGC 60.04 55.0 9.9 9.9 40.87 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1825 2927 0.040058 TCAAATGTCTGCCAGGCCAT 59.96 50.0 9.64 1.93 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.176285 CTTTATTACATCTTCAGAGAGCAGC 57.824 40.000 0.00 0.00 34.85 5.25
25 26 3.533606 TTACATCTTCAGAGAGCAGCC 57.466 47.619 0.00 0.00 34.85 4.85
26 27 0.175302 ACATCTTCAGAGAGCAGCCG 59.825 55.000 0.00 0.00 34.85 5.52
27 28 0.530211 CATCTTCAGAGAGCAGCCGG 60.530 60.000 0.00 0.00 34.85 6.13
28 29 2.308968 ATCTTCAGAGAGCAGCCGGC 62.309 60.000 21.89 21.89 45.30 6.13
38 39 4.379243 CAGCCGGCGTCTCACCTT 62.379 66.667 23.20 0.00 0.00 3.50
39 40 4.070552 AGCCGGCGTCTCACCTTC 62.071 66.667 23.20 0.00 0.00 3.46
41 42 3.382832 CCGGCGTCTCACCTTCCT 61.383 66.667 6.01 0.00 0.00 3.36
42 43 2.125912 CGGCGTCTCACCTTCCTG 60.126 66.667 0.00 0.00 0.00 3.86
43 44 2.636412 CGGCGTCTCACCTTCCTGA 61.636 63.158 0.00 0.00 0.00 3.86
44 45 1.216710 GGCGTCTCACCTTCCTGAG 59.783 63.158 0.00 0.00 39.35 3.35
45 46 1.446966 GCGTCTCACCTTCCTGAGC 60.447 63.158 0.00 0.00 38.07 4.26
46 47 1.967535 CGTCTCACCTTCCTGAGCA 59.032 57.895 0.00 0.00 38.07 4.26
47 48 0.108898 CGTCTCACCTTCCTGAGCAG 60.109 60.000 0.00 0.00 38.07 4.24
58 59 2.633860 CTGAGCAGGACACAAACCC 58.366 57.895 0.00 0.00 0.00 4.11
59 60 0.109342 CTGAGCAGGACACAAACCCT 59.891 55.000 0.00 0.00 0.00 4.34
60 61 1.347707 CTGAGCAGGACACAAACCCTA 59.652 52.381 0.00 0.00 0.00 3.53
61 62 1.771854 TGAGCAGGACACAAACCCTAA 59.228 47.619 0.00 0.00 0.00 2.69
62 63 2.152016 GAGCAGGACACAAACCCTAAC 58.848 52.381 0.00 0.00 0.00 2.34
63 64 1.493022 AGCAGGACACAAACCCTAACA 59.507 47.619 0.00 0.00 0.00 2.41
64 65 2.092103 AGCAGGACACAAACCCTAACAA 60.092 45.455 0.00 0.00 0.00 2.83
65 66 2.691011 GCAGGACACAAACCCTAACAAA 59.309 45.455 0.00 0.00 0.00 2.83
66 67 3.131400 GCAGGACACAAACCCTAACAAAA 59.869 43.478 0.00 0.00 0.00 2.44
67 68 4.678622 CAGGACACAAACCCTAACAAAAC 58.321 43.478 0.00 0.00 0.00 2.43
68 69 4.158764 CAGGACACAAACCCTAACAAAACA 59.841 41.667 0.00 0.00 0.00 2.83
69 70 4.959839 AGGACACAAACCCTAACAAAACAT 59.040 37.500 0.00 0.00 0.00 2.71
70 71 5.047188 GGACACAAACCCTAACAAAACATG 58.953 41.667 0.00 0.00 0.00 3.21
71 72 5.163499 GGACACAAACCCTAACAAAACATGA 60.163 40.000 0.00 0.00 0.00 3.07
72 73 6.287589 ACACAAACCCTAACAAAACATGAA 57.712 33.333 0.00 0.00 0.00 2.57
73 74 6.702329 ACACAAACCCTAACAAAACATGAAA 58.298 32.000 0.00 0.00 0.00 2.69
74 75 7.162082 ACACAAACCCTAACAAAACATGAAAA 58.838 30.769 0.00 0.00 0.00 2.29
75 76 7.661847 ACACAAACCCTAACAAAACATGAAAAA 59.338 29.630 0.00 0.00 0.00 1.94
94 95 4.365899 AAAAGACTGAAAACGGTGTTCC 57.634 40.909 8.53 0.00 0.00 3.62
116 117 1.302033 CCGCTTGAGCACTTGGTCT 60.302 57.895 9.68 0.00 42.60 3.85
120 121 0.671781 CTTGAGCACTTGGTCTCCGG 60.672 60.000 9.68 0.00 42.60 5.14
131 132 1.064758 TGGTCTCCGGAAAATCATGGG 60.065 52.381 5.23 0.00 0.00 4.00
144 145 5.732331 AAATCATGGGTGGAGAAGGATAA 57.268 39.130 0.00 0.00 0.00 1.75
152 153 5.152934 GGGTGGAGAAGGATAATACTACCA 58.847 45.833 0.00 0.00 32.08 3.25
164 165 0.917533 TACTACCAGAGCCGGAGTCT 59.082 55.000 5.05 2.52 0.00 3.24
176 177 3.514309 AGCCGGAGTCTACTTGTTGTATT 59.486 43.478 5.05 0.00 0.00 1.89
237 238 0.039798 CATCAACGGCTATGGCATGC 60.040 55.000 9.90 9.90 40.87 4.06
240 241 2.591753 ACGGCTATGGCATGCTGT 59.408 55.556 22.37 22.37 43.13 4.40
280 281 1.198637 GATCCAGCAGCAACACAACTC 59.801 52.381 0.00 0.00 0.00 3.01
282 283 0.740149 CCAGCAGCAACACAACTCAA 59.260 50.000 0.00 0.00 0.00 3.02
315 316 0.391528 CCATCACTGCACATCACGGA 60.392 55.000 0.00 0.00 0.00 4.69
353 354 3.552384 AGGTCGGGCGTCCAACAA 61.552 61.111 6.96 0.00 0.00 2.83
410 412 2.235402 GTTGGGGATGAACGGAGAAGTA 59.765 50.000 0.00 0.00 0.00 2.24
445 447 5.406780 ACAAAGCTAGTTCTTGTGAATCGAG 59.593 40.000 0.00 0.00 34.40 4.04
495 497 8.040727 GGACAGCTTTTATTCAATGGGTATTTT 58.959 33.333 0.00 0.00 0.00 1.82
517 519 5.601583 TGGTAATCGGTTCAGCTGTATTA 57.398 39.130 14.67 8.47 0.00 0.98
547 1608 6.790285 AAATAGTGTAAACTGGTTACCACG 57.210 37.500 12.73 0.00 41.35 4.94
554 1615 6.060935 GTAAACTGGTTACCACGTGACACG 62.061 50.000 25.72 25.72 40.83 4.49
712 1775 1.960763 AGTTTGCAGCGCATCGTCA 60.961 52.632 11.47 0.00 38.76 4.35
888 1972 1.449601 CCGTCCATTTCCACCTCCG 60.450 63.158 0.00 0.00 0.00 4.63
890 1974 0.460284 CGTCCATTTCCACCTCCGAG 60.460 60.000 0.00 0.00 0.00 4.63
1049 2139 4.982295 GCGTGCACATTATACTGTATCTCA 59.018 41.667 18.64 0.00 0.00 3.27
1081 2171 4.024893 CGGTACATACAATTGATCTGTGGC 60.025 45.833 13.59 9.18 0.00 5.01
1085 2175 5.443283 ACATACAATTGATCTGTGGCTGAT 58.557 37.500 13.59 0.00 0.00 2.90
1192 2283 3.110178 GACGTGAAGAACCCGGCG 61.110 66.667 0.00 0.00 0.00 6.46
1252 2343 2.087009 CGACAAGAAGACGACCGCC 61.087 63.158 0.00 0.00 37.60 6.13
1460 2556 2.910688 TTTGTCCGCAGAAGAAGAGT 57.089 45.000 0.00 0.00 0.00 3.24
1520 2616 1.594293 CTTGCCGTCGTTGGTGAGT 60.594 57.895 0.00 0.00 0.00 3.41
1558 2656 3.234390 CACGACCAGAAGCACGTG 58.766 61.111 12.28 12.28 46.78 4.49
1582 2680 2.046700 GGGATGCGACGGTGGAAA 60.047 61.111 0.00 0.00 0.00 3.13
1584 2682 1.436983 GGGATGCGACGGTGGAAATC 61.437 60.000 0.00 0.00 0.00 2.17
1595 2693 0.657840 GTGGAAATCTTGGCGATCGG 59.342 55.000 18.30 0.00 0.00 4.18
1596 2694 0.251916 TGGAAATCTTGGCGATCGGT 59.748 50.000 18.30 0.00 0.00 4.69
1598 2696 0.028110 GAAATCTTGGCGATCGGTGC 59.972 55.000 18.30 0.00 0.00 5.01
1599 2697 0.392998 AAATCTTGGCGATCGGTGCT 60.393 50.000 18.30 0.00 0.00 4.40
1631 2729 3.118454 CGGTCGCCGCATTTGACT 61.118 61.111 5.38 0.00 41.17 3.41
1637 2735 1.444895 GCCGCATTTGACTTGCAGG 60.445 57.895 0.00 0.00 40.14 4.85
1646 2744 3.421919 TTGACTTGCAGGACATCATCA 57.578 42.857 1.40 0.00 0.00 3.07
1690 2788 8.141835 TGATCTGTATGAATAATTTGTGTCGG 57.858 34.615 0.00 0.00 0.00 4.79
1721 2823 2.099427 GGGGAGTGACTAGCGAAGTAAG 59.901 54.545 0.00 0.00 39.07 2.34
1817 2919 4.834357 TCATCACCACAATCACAAGTTG 57.166 40.909 0.00 0.00 0.00 3.16
1825 2927 6.009589 ACCACAATCACAAGTTGGATTCATA 58.990 36.000 7.96 0.00 31.63 2.15
2143 3248 5.244755 TGTCTACTTTATCAACATGCTGCA 58.755 37.500 4.13 4.13 0.00 4.41
2239 3345 0.524392 CGAGCAGCTCAACTAGACCG 60.524 60.000 22.49 1.47 0.00 4.79
2242 3348 1.355066 GCAGCTCAACTAGACCGTGC 61.355 60.000 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.202570 GGCTGCTCTCTGAAGATGTAATAAAG 59.797 42.308 0.00 0.00 0.00 1.85
1 2 6.051717 GGCTGCTCTCTGAAGATGTAATAAA 58.948 40.000 0.00 0.00 0.00 1.40
2 3 5.605534 GGCTGCTCTCTGAAGATGTAATAA 58.394 41.667 0.00 0.00 0.00 1.40
3 4 4.261783 CGGCTGCTCTCTGAAGATGTAATA 60.262 45.833 0.00 0.00 0.00 0.98
4 5 3.492309 CGGCTGCTCTCTGAAGATGTAAT 60.492 47.826 0.00 0.00 0.00 1.89
5 6 2.159184 CGGCTGCTCTCTGAAGATGTAA 60.159 50.000 0.00 0.00 0.00 2.41
6 7 1.406898 CGGCTGCTCTCTGAAGATGTA 59.593 52.381 0.00 0.00 0.00 2.29
7 8 0.175302 CGGCTGCTCTCTGAAGATGT 59.825 55.000 0.00 0.00 0.00 3.06
8 9 0.530211 CCGGCTGCTCTCTGAAGATG 60.530 60.000 0.00 0.00 0.00 2.90
9 10 1.821936 CCGGCTGCTCTCTGAAGAT 59.178 57.895 0.00 0.00 0.00 2.40
10 11 3.011635 GCCGGCTGCTCTCTGAAGA 62.012 63.158 22.15 0.00 36.87 2.87
11 12 2.511145 GCCGGCTGCTCTCTGAAG 60.511 66.667 22.15 0.00 36.87 3.02
12 13 4.441695 CGCCGGCTGCTCTCTGAA 62.442 66.667 26.68 0.00 38.05 3.02
16 17 4.863925 GAGACGCCGGCTGCTCTC 62.864 72.222 28.01 25.25 37.21 3.20
21 22 4.379243 AAGGTGAGACGCCGGCTG 62.379 66.667 26.68 20.24 39.30 4.85
22 23 4.070552 GAAGGTGAGACGCCGGCT 62.071 66.667 26.68 11.91 39.30 5.52
24 25 3.382832 AGGAAGGTGAGACGCCGG 61.383 66.667 0.00 0.00 39.30 6.13
25 26 2.125912 CAGGAAGGTGAGACGCCG 60.126 66.667 0.00 0.00 39.30 6.46
26 27 1.216710 CTCAGGAAGGTGAGACGCC 59.783 63.158 0.00 0.00 46.02 5.68
27 28 1.446966 GCTCAGGAAGGTGAGACGC 60.447 63.158 5.05 0.00 46.02 5.19
28 29 0.108898 CTGCTCAGGAAGGTGAGACG 60.109 60.000 5.05 0.00 46.02 4.18
29 30 3.830679 CTGCTCAGGAAGGTGAGAC 57.169 57.895 5.05 0.00 46.02 3.36
40 41 0.109342 AGGGTTTGTGTCCTGCTCAG 59.891 55.000 0.00 0.00 31.11 3.35
41 42 1.429930 TAGGGTTTGTGTCCTGCTCA 58.570 50.000 0.00 0.00 34.75 4.26
42 43 2.152016 GTTAGGGTTTGTGTCCTGCTC 58.848 52.381 0.00 0.00 34.75 4.26
43 44 1.493022 TGTTAGGGTTTGTGTCCTGCT 59.507 47.619 0.00 0.00 34.75 4.24
44 45 1.975660 TGTTAGGGTTTGTGTCCTGC 58.024 50.000 0.00 0.00 34.75 4.85
45 46 4.158764 TGTTTTGTTAGGGTTTGTGTCCTG 59.841 41.667 0.00 0.00 34.75 3.86
46 47 4.345854 TGTTTTGTTAGGGTTTGTGTCCT 58.654 39.130 0.00 0.00 37.18 3.85
47 48 4.722361 TGTTTTGTTAGGGTTTGTGTCC 57.278 40.909 0.00 0.00 0.00 4.02
48 49 5.897050 TCATGTTTTGTTAGGGTTTGTGTC 58.103 37.500 0.00 0.00 0.00 3.67
49 50 5.923733 TCATGTTTTGTTAGGGTTTGTGT 57.076 34.783 0.00 0.00 0.00 3.72
50 51 7.602517 TTTTCATGTTTTGTTAGGGTTTGTG 57.397 32.000 0.00 0.00 0.00 3.33
72 73 4.461431 AGGAACACCGTTTTCAGTCTTTTT 59.539 37.500 0.10 0.00 0.00 1.94
73 74 4.014406 AGGAACACCGTTTTCAGTCTTTT 58.986 39.130 0.10 0.00 0.00 2.27
74 75 3.377172 CAGGAACACCGTTTTCAGTCTTT 59.623 43.478 0.10 0.00 0.00 2.52
75 76 2.943033 CAGGAACACCGTTTTCAGTCTT 59.057 45.455 0.10 0.00 0.00 3.01
76 77 2.561569 CAGGAACACCGTTTTCAGTCT 58.438 47.619 0.10 0.00 0.00 3.24
77 78 1.602377 CCAGGAACACCGTTTTCAGTC 59.398 52.381 0.10 0.00 0.00 3.51
78 79 1.675552 CCAGGAACACCGTTTTCAGT 58.324 50.000 0.10 0.00 0.00 3.41
79 80 0.310854 GCCAGGAACACCGTTTTCAG 59.689 55.000 0.00 0.00 0.00 3.02
80 81 1.104577 GGCCAGGAACACCGTTTTCA 61.105 55.000 0.00 0.00 0.00 2.69
81 82 1.658114 GGCCAGGAACACCGTTTTC 59.342 57.895 0.00 0.00 0.00 2.29
82 83 2.190841 CGGCCAGGAACACCGTTTT 61.191 57.895 2.24 0.00 42.01 2.43
83 84 2.593436 CGGCCAGGAACACCGTTT 60.593 61.111 2.24 0.00 42.01 3.60
87 88 3.365265 CAAGCGGCCAGGAACACC 61.365 66.667 2.24 0.00 0.00 4.16
94 95 2.670934 AAGTGCTCAAGCGGCCAG 60.671 61.111 2.24 0.00 45.83 4.85
116 117 0.995803 TCCACCCATGATTTTCCGGA 59.004 50.000 0.00 0.00 0.00 5.14
120 121 3.968265 TCCTTCTCCACCCATGATTTTC 58.032 45.455 0.00 0.00 0.00 2.29
131 132 6.294843 GCTCTGGTAGTATTATCCTTCTCCAC 60.295 46.154 0.00 0.00 0.00 4.02
144 145 1.495574 AGACTCCGGCTCTGGTAGTAT 59.504 52.381 0.00 0.00 0.00 2.12
152 153 1.546476 CAACAAGTAGACTCCGGCTCT 59.454 52.381 0.00 0.98 0.00 4.09
176 177 4.351938 CGGGCGTCGTTGTCCTCA 62.352 66.667 0.00 0.00 0.00 3.86
198 199 3.181967 GTTGCAGACGCGAGCGAT 61.182 61.111 24.72 9.21 42.97 4.58
201 202 2.127609 GTTGTTGCAGACGCGAGC 60.128 61.111 15.93 14.77 42.97 5.03
209 210 0.311790 AGCCGTTGATGTTGTTGCAG 59.688 50.000 0.00 0.00 0.00 4.41
237 238 1.153369 CCGGGTGCCATAGTCACAG 60.153 63.158 0.00 0.00 36.22 3.66
240 241 4.155733 CGCCGGGTGCCATAGTCA 62.156 66.667 2.18 0.00 36.24 3.41
315 316 2.366590 TGTCATGTTGTGCTCACTCTCT 59.633 45.455 1.47 0.00 0.00 3.10
397 399 3.551454 CGTTCCTTGTACTTCTCCGTTCA 60.551 47.826 0.00 0.00 0.00 3.18
398 400 2.985139 CGTTCCTTGTACTTCTCCGTTC 59.015 50.000 0.00 0.00 0.00 3.95
410 412 2.104281 ACTAGCTTTGTCCGTTCCTTGT 59.896 45.455 0.00 0.00 0.00 3.16
445 447 6.308766 CCAAATTGGTTGAACTGAATCGATTC 59.691 38.462 27.59 27.59 39.87 2.52
495 497 4.481368 AATACAGCTGAACCGATTACCA 57.519 40.909 23.35 0.00 0.00 3.25
536 1597 2.513159 CGTGTCACGTGGTAACCAG 58.487 57.895 17.00 0.00 36.74 4.00
547 1608 1.987704 TTGCTTGCCACACGTGTCAC 61.988 55.000 20.49 14.32 0.00 3.67
554 1615 2.460757 ATTTGGATTGCTTGCCACAC 57.539 45.000 0.00 0.00 33.01 3.82
598 1659 2.560981 CGATTTGCCCCTTTTAACCAGT 59.439 45.455 0.00 0.00 0.00 4.00
888 1972 1.939769 GCGACCACCAGGAGAGACTC 61.940 65.000 0.00 0.00 38.69 3.36
890 1974 2.574399 GCGACCACCAGGAGAGAC 59.426 66.667 0.00 0.00 38.69 3.36
1034 2122 5.047235 GCCCGAACCTGAGATACAGTATAAT 60.047 44.000 0.00 0.00 44.40 1.28
1049 2139 0.971959 TGTATGTACCGCCCGAACCT 60.972 55.000 0.00 0.00 0.00 3.50
1282 2373 2.125673 CCGTCGGCGTTCCTGAAT 60.126 61.111 9.28 0.00 36.15 2.57
1399 2494 0.172578 GATAAACCAAAGCACGCCCC 59.827 55.000 0.00 0.00 0.00 5.80
1569 2667 0.953471 CCAAGATTTCCACCGTCGCA 60.953 55.000 0.00 0.00 0.00 5.10
1582 2680 1.522355 CAGCACCGATCGCCAAGAT 60.522 57.895 10.32 0.00 43.51 2.40
1584 2682 1.577328 AAACAGCACCGATCGCCAAG 61.577 55.000 10.32 0.00 0.00 3.61
1595 2693 0.312102 GAGCAGGGACAAAACAGCAC 59.688 55.000 0.00 0.00 0.00 4.40
1596 2694 1.165907 CGAGCAGGGACAAAACAGCA 61.166 55.000 0.00 0.00 0.00 4.41
1598 2696 0.535102 ACCGAGCAGGGACAAAACAG 60.535 55.000 0.00 0.00 46.96 3.16
1599 2697 0.534203 GACCGAGCAGGGACAAAACA 60.534 55.000 0.00 0.00 46.96 2.83
1631 2729 3.692593 CACTCATTGATGATGTCCTGCAA 59.307 43.478 0.00 0.00 36.02 4.08
1646 2744 2.567169 TCAACGGGAGACATCACTCATT 59.433 45.455 0.00 0.00 38.51 2.57
1713 2815 2.225963 AGTCACAGGTCGTCTTACTTCG 59.774 50.000 0.00 0.00 0.00 3.79
1721 2823 2.401351 GGTAACAAGTCACAGGTCGTC 58.599 52.381 0.00 0.00 0.00 4.20
1817 2919 1.074405 TCTGCCAGGCCATATGAATCC 59.926 52.381 9.64 2.49 0.00 3.01
1825 2927 0.040058 TCAAATGTCTGCCAGGCCAT 59.960 50.000 9.64 1.93 0.00 4.40
1900 3003 5.252547 ACCATTTTTGTTTTTCCAAGTGCT 58.747 33.333 0.00 0.00 0.00 4.40
2143 3248 0.748005 GTCTGTTGGCGGCATATGGT 60.748 55.000 14.32 0.00 0.00 3.55
2209 3315 1.786582 GCTGCTCGAGCTTGTCTTG 59.213 57.895 35.27 17.62 45.21 3.02
2230 3336 3.678056 TGAATTGAGCACGGTCTAGTT 57.322 42.857 0.00 0.00 0.00 2.24
2239 3345 0.874390 TGGTCGCTTGAATTGAGCAC 59.126 50.000 10.14 7.43 40.13 4.40
2242 3348 3.904136 AAAGTGGTCGCTTGAATTGAG 57.096 42.857 0.00 0.00 0.00 3.02
2282 3388 4.141233 ACAATTTGCATTAGATTGCCCC 57.859 40.909 10.62 0.00 42.06 5.80
2360 3466 2.116125 GCAGGTGCTTGGGGAACT 59.884 61.111 0.00 0.00 38.21 3.01
2413 3519 0.179032 TTGTTCACCATGGTGCTCGT 60.179 50.000 35.73 1.67 45.04 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.