>input_sequence_78538
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-------ATGGCCATGGCGAACAACCCCACGGTGCGTGCACATTATACTGT--ATCTCAGGTTCGGGCGGTACATACAAT
TGATCTGTGGCTGATGTGGTTGGTT-CCCTGTCGTGTGTGTGGGCAAGAAATCCGGACACTACGCGCAGAACAAGGGCCG
GTCGCTGCCCAAGTTCGGGGAGTGGGACGTGAAGAACCCGGCGACGGCCGACGGCTTCACCGTCATATTCCAGAGAGCCC
GCGACGACAAGAAGACGACCGCCGGCCCCGGGAGGCCGGGCATCCCGCCGGCATTCAGGAACGCCGACGGCCGCTACGGC
ACCATCAAAACCGGCAACGGCTACCCGTACGCCAGGGTGGCGACACCCAAACGGTCCAAGGTACGT----GCGTGCGTTC
TCTGCGCGCGCAAGGGGCGTGCTTTGGTTTATCGCGTGCATTGACGCCACCAAC-TTTTGTCCGCAGAAGAAGAGTTGGT
TCTCCTGCACCAGCTGCCGATTCTGA------------------------------------------------------
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>chr2B_1_TraesCS2B01G485900
CTTTATTACATCTTCAGAGAGCAGCCGGCGTCTCACCTTCCTGAGCAGGACACAAACCCTAACAAAACATGAAAAAAGAC
TGAAAACGGTGTTCCTGGCCGCTTGAGCACTTGGTCTCCGGAAAATCATGGGTGGAGAAGGATAATACTACCAGAGCCGG
AGTCTACTTGTTGTATTGAGGACAACGACGCCCGACGCATCGCTCGCGTCTGCAACAACATCAACGGCTATGGCATGCTG
TGACTATGGCACCCGGCGACGATCCAGCAGCAACACAACTCAAGAGAGGGCCGTAGCCATCACTGCACATCACGGAGAGA
GTGAGCACAACATGACAGGTCGGGCGTCCAACAAGCGAGGGCA-GAGGAGCAGGACAGCGAGCCGCCGGGGTTGGGGATG
AACGGAGAAGTACAAGGAACGGACAAAGCTAGTTCTTGTGAATCGAGAATCGATTCAGTTCAACCAATTTGGACAGCTTT
TATTCAATGGGTATTTTGGTAATCGGTTCAGCTGTATTA-----------------------------------------
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----------------------------------------------------------TATGAAAAATAGTGTAAACTGG
TTACCACGTGACACGTGTGGCAAGCAATCCAAATTATTTATGAAAAAAAATAGTGTAAACTGGTTAAAAGGGGCAAATCG
TCAATTTCCCCAATGAAAAGAGGCCTGCCTCGTCGCGTCCATTATTAGAGGT-GGAAAAAAAATC-TATCACATGCAGTT
TGCAGCGCATCGTCAATTTGCACGGCGCTCCTGGACGGCCGGTGAGGACA------GTCCCGAAGCCCGGTTCCGAGGGA
GACGCCGCCAGCCTATTT--TGCGCGGGAAAGGAACGGACGAGGTTCCCCTGCT------------GCAGTATAAAACGA
GGGGCCTCCCCTCCACC-TCGATCACCACCCTCCCGTCCATTTCCACCTCCGAGTCTCTCCTGGTGGTCGCGGCTTCCTC
CTCGCCTTCGATCTCCTTCGCCTCGTGCCCGGCGGCCAGTCGGGCGGTCGTCTGAATCCTTCCTACTCGCGCG----AGC
TAGCTCGATGGCCATGGCGAACAACCCCACGGTGCGTGCACATTATACTGT--ATCTCAGGTTCGGGCGGTACATACAAT
TGATCTGTGGCTGATGTGGTTGGTT-CCCTGTCGTGTGTGTGGGCAAGAAATCCGGACACTACGCGCAGAACAAGGGCCG
GTCGCTGCCCAAGTTCGGGGAGTGGGACGTGAAGAACCCGGCGACGGCCGACGGCTTCACCGTCATATTCCAGAGAGCCC
GCGACGACAAGAAGACGACCGCCGGCCCCGGGAGGCCGGGCATCCCGCCGGCATTCAGGAACGCCGACGGCCGCTACGGC
ACCATCAAAACCGGCAACGGCTACCCGTACGCCAGGGTGGCGACACCCAAACGGTCCAAGGTACGT----GCGTGCGTTC
TCTGCGCGCGCAAGGGGCGTGCTTTGGTTTATCGCGTGCATTGACGCCACCAAC-TTTTGTCCGCAGAAGAAGAGTTGGT
TCTCCTGCACCAGCTGCCGATTCTGATGCCGTAGCTGCTTGCCGTCGTTGGTGAGT--GATCCGATACTTCGCCGCGCCA
CGACCAGAAGCACGTGCTCGACGGGATGCGACGGTGGAAATCTTGGCGATCGGTGCTGTTTTGTCCCTGCTCGGTCGCCG
CATTTGACTTGCAGGACATCATCAATGAGTGATGTCTCCCGTTGATCTGTATGAATAATTTGTGTCGGATAAAAGGGGGG
----GAGTGACTAGCGAAGTAAGACGACCTGTGACTTGTTACCCTATTGTTTTGCAAATGTTCATGCTAATCATGCCATA
AACACGAACTGTTCGCTTCATCACCACAATCACAAGTTGGATTCATATGGCCTGGCAGACATTTGATTTGAAAACAATTA
TT-AAAAAAATCAATAGCTTGAACGGACACAGCGAGTAAAAAAGCACTTGGAAAAACAAAAATGGTATCCATAGTATTAC
ATATTGTGCATACGAGAATAATAATCTGCTGTCTGAATTCCAGTCAAAATTTTAGTACTACTAA--TAATAGCACCACCT
AGAGGAATAATGAACAAGTATCAGAACCGGATATCACCAATAATCAGTTATTTACCGGACGCGACACAGTACAACCCGGC
ACCGTGATTGCAGAAAGAAAGAGATGTCTACTTTATCAACATGCTGCACCATATGCCGCCAACAGACCGAGTACAGTGAC
ACCATAACAACAGACCTCCAAAA-AATTCTGAGGCAAGACAAGCTCGAGCAGCTCAACTAGACCGTGCTCAATTCAAGCG
ACCACTTTTGCATCTTGGGCGCAAGGCGGGGCAATCTAATGCAAATTGTACAGCAGAATATCAATACATCAGCCCCTGAG
CTATTTAGACAAGAATGGTCTCGCCAGTTCCCCAAGCACCTGCACTGCACCTCCATGAGATCACAAGCCATCCCGGCAAC
GAGCACCATGGTGAACAAAACTGTG-ATATACGGCTACCCCCGGATCCAC--TATTTCTCCTGACTTTCCTCCTTTTCC
>chr2A_89
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--------GTGTTCTTGGCCGCTTGAGCACTTGGTCACCGAAAAATCATGGATGGAGAAGGATAGTACTACCTGAGCCGG
AGTCAACTTGTTGTATCGAGGACAACGACGCCCGACGCCTCACTCGCGTTTGCAACAACATCAACGGCTATGGCATGATG
CGACTATGGCACCCGGCGACGATCCAGCAGCAACACAACTTAGGAGAGGGCCGTAGCCATCACTGCACATCACGGGGAGA
GTGAGCACAACATGACAGGTCGGGCGTCCAACAGGCGAGGGCAGGAGGAGCAGGACAGCGAGCCGCCGGGGTTGGGGACA
AACGGAGAAGTGCAAGGAACGGACAAAGCTAGTTCTTGTGAATCGAAAATCGATTCAGTTCAACCAATTTGGACAGCTTT
TATTCAATGGGTATTTGGGTAATCAGTTCAGCTGTATTTATGAAAAAGAGAAAAGTATACTTTTCGTCTCTCAACTCTTG
GTGAAGTCTAGATTTGGTCCCTCAACTTTAAAACCGGACAACTTGCACCCTCAACTACCGAAACCGGATAAGGTTCATCC
CTGGACTCGGTTTTGACCGGTTTTTGGTGTTGACTCACCCCGGTTTTGACCGGTGCTCATTCATATTCCTGTAATTTTTT
TATATCCGTGAACTTTTTGAAATTCACATACACTTTTCAACTCCGCGTAGTTTTTTCAAGGTCGCGTATTTTTTTAAAAA
TAAACATACCTTTTTTCAAATCAGCGAACTATTCTGAAATTCGCGTACTTTTTTCAAATCCATGATTTTTTAACATTTAC
GTACTTTTTCCAAATCCCCGTATTTTCCCAAGTTTGTGTAACTTTATCAAATCCAAGTATTTTTCAAAGCCATGAATTGT
TTCTGAAATTTGCATACTTATTTCAAATCCACATGCTTTCCAAAGTCTGCATTTTTTTCAAATCCGTGTTGCTTTTATAA
TCCATGAACTTTGTATGAAATTCACGTACTTCTTTCAAGTTGAAATAATTTTTGAAATCCACATATTTTTGCGCAAAAGA
AGTCCATATCCACGTACTTTTTTCAAATTCGCATAAAATTTTCAAATTCATGAACTCTTTCAGAAAAAATGTACTCGAAT
ATGAAAGGTGCATCAATTTTAAAAAATTAAATGAACTTAAAAAATAAATGAACTTTAAAAAATATGCATATTTGAAAAAG
TACATGAACTTGGAAAAAAGTACGCCGATTTAAAAAAAGTACACACATTTTAAAATGGTTCACGTATTTAAAAAAAGTAA
CCGAATTTGAAAACAGTACGTAGACTTGGAAAAGGTAGGCAAATTTGAGTCGGAACGGTCAAAACAGGGGTGGGACAGCA
CCAAAACCGGTCAAAACCGTGACCAGGGATGAATCTTGTCTGGTTTGAGAAGTTAAGGGTGCAAGTTGTCCAGTTTGAAG
TTGAGGGACCAAATCTAAACTCCGCCAAGAATTGAGGGATGAAAAGTATACTTTTCTCTATGAAAAATAGTGTAAATTGG
TTACCACATGACACATGTGGTAAGCAATCCAAATTATTTATGAAAAAAAATAGTGTAA-CTGGTTAAAAGGGGCAAATCG
TCAATTTCCCCAATGAAAAGAGGCCTGCCTCGTCGCGTCCATTATTAGAGGT-GGGAAAAACAACGTGTCACATGCAGTT
TGCAGCGCATCGTCCATTTGCACGGCGCTCCTGGACGGCCGGTGAGGAAGGC------CCCGAAGCCCGGTTCCGAGGGA
GACACCGCCAGCCTATTTTTTGCGTGGGAAAGGAACGGACGAGGTTCCCCCGCTCCAAGCACGGCCGCAGTATAAAACGA
GGGGCCTCCCCTCCACCTTCGATCACCACCCTCCCGTCCATTTCCACCTCCAATTCTCTCCTGGTGGTCGCGGCTTCCTC
CTCGCCTTCGATCTCCTTCGCCTCGTGCCCGGCGGCCGGTCGGGCGGTCGTCTGAATCCTTCCTACTCGCGCGGT----C
TAGCTCGATGGCCATGGCGAACAACCCCACGGTGCGTGCACGTTATACTGT--ATCGCTGGTTCGGGCGGTACATACAAT
TGACCTGTGGTTGACGTGGTTGGTTCCCCTGTCGTGTGTGTGGGCAAGAAATCCGGACACTACGCGCAGAACAAGGGCCG
GTCGCTGCCCAAGTTCGGGGAGTGGGACGTGAAGAACCCGGCCACGGCCGACGGCTTCACCGTCATATTCCAGCGAGCCC
GCGACGACAAGAAGACGACCGCTGGCCCCGGGAGGCCGGGCATCCCGCCGGCCTTCAGGAACGCCGACGGCGGCAACGGC
ACCATCAAAACCGGCAACGGCTACCCGTACGCCAGGGTGGCTACACCCAAACGGTCCAAGGTACGT----GCGTGCGTTC
TCTGCGCGCGCAACGGGCGTGCCTTGGTTTATCGCGTGCATTGACGCCACCAACTTTTTGTCCGCAGAAGAAGAGCTGGT
TCTCCTGCACCAGTTGCCGATTCTGATGCCGTAGCTGCTTGCCGTCGTTGGTGAGAGAGATCCGATACTTCGCCGCGCCA
CGACCAGAAGCACGTACTCGGCGGGAGGCGACGGTGGAACTTTTGGCGATCGTGGTGCTTCTGACCCTGCTCGGTCGCCG
CATCTCACGTGCAGAACATCATCCATGAGTGATGTCTCCCGTTGATCTGTATGAATAATTTGTGTCCAATAAAAGGGGGG
----AAGTGGCTAGTTATGTAAAACGACCTGTGACTTGTTACCCTATTGTTTTGCAAATGTTCATGCTAATCATGCCATA
AACACGAACTGTTCGCTTCATCACCACAATCACAAGTTCGATTCATGTGGCCTGGCAGACATTTGATTTGAAAGCAATTA
TAAAAAAAAATCAATAGCTTGAACAGACACAGCGAGTAAAAA-GCACTTAGAAAAACAAAAACGGTATCCAAAGTATTAC
ATATTGTGCATACGAGAATAATAATCTGATGTCTGAATTCCAGTCAAAATTTTAGTACTACTAAAATAATAGCACCACCT
AGAGGAATAATGAACAAGTATCAGAACCGGATATCACCAATAATCAGTTATTTACCGGACACGACACAGTACAACCCAGC
ACCGTGATTGCAGAAAGATAGATATGTCTACTTTATCAACATGCTGCGCCATATGCCCCCAACAGACCGAGTACGGTGAC
ACCATAACAACAGACCTCCAAAAAAATTCTGAGGTAAGACAAGCTCGAGCAGCTCGACTAGACCATGTTCAATTCAAGCG
ACCACTTTTGCATCTTGGGCGCAAGGCAGGGCAATCTAATGCATATTGTACAGCAGAATATCAATACATCAGCCCCTGAG
CTATTTAGACAAGAATGGTCTCGCCGGTTCCCCAAGCACCTGCACTGCACCTCCATGAAATCACAAGCCATCCCGGCATC
GAGCACCATGGTGAACAGAACTGTGAATATACAGCTACCCCCGGATCCACTTTATTTCTCCTGACTTTCCTCCTTTTCC
>chr2D_632
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-----------AATGAAAAGAGGCCTGCCTCGTCGCGTCCATTATTAGAGGTGGGAAAAAACAACGTATCACATGCAGTT
TGCAGCGCATCGTCCATTTGCACGGCGCTCCTGGACGGCCGGTGAGGGTGAGGAAGGTCCCGAAGCCCGGTTCCGACGGA
GACGCCGCCAGACTATTTG--GCGCGGGAAAGGAACGGACGAGGTTCCCCTGCT------------GCAGTATAAAACGA
GGGGCCTCCCCTCCACCT-CGATCACCACCCTCCCGTTCATTTCCACCTCCAATTCTCTCCTGGTGGTCGCGGCTTCCTC
CTCGCCTTCGATCTCCTTCGCCTCGTGCCCGGCGGCCAGTCGGGCGGTCGTCTGAACCCTTTCTACTCGCGCGGGCTAGC
TAGCTCGATGGCCATGGCGAACAACCCCACGGTGCGTGCACGTTATACTGTAAATCTCTGGTTCGGGCGGTACATACAAT
TGATCTGTGGTTGACGTGGTTGGTT-CCGTGTCGTGTGTGTGGGCAAGAAATCCGGACACTACGCGCAGAACAAGGGCCG
GTCGCTGCCCAAGTTCGGGGAGTGGGACGTGAAGAACCCGGCCACGGCCGACGGCTTCACCGTCATATTCCAGAGAGCCC
GCGACGACAAGAAGACGACCACTGGCCCCGGGAGGCCGGGCATCCCGCCGGCCTTGAGGAACGCCGACGGCCGCTACGGC
ACCATCAAAACCGGCAACGGCTACCAGTACGCCAGGGTGGCGACACCCAAACGGTCCAAGGTACGTACGTGCTTGCGTTC
TCTCCGCGCGCAACGGGCGTGCTTTGGTTTATCGCGTGCACTGACGCCACGAAC-TTTTGTCCGCAGAAGAAGAGCTGGT
TCTCCTGCACCAGCTGCCGATTCTGATGCCGTAGCTGCTTGCCGTCGTTGGTGAGAGAGATCCGTTACTTCGCCGCGCCA
CGGCCAGAAGCACGTACTCGACGGGAGGCGACGGTGGGATTTTTGGCGATCGTGGTGGCTTTGTCCCTGCTCGGTCGCCG
CATTTGACGTCCAGTACATCATCGACGAGTGATGTCACC-GTTGATCTGTATGAATAATTTGTGTCGAATAAAAGGGGGG
AAGTGAGTGACTAGTGAAGTAAAACGACCTGTAACTTGTTACCCTATTCTTTTGCAAATGTTCATGCTAATCATGTCATA
AACACGAACTGTTCGCTGCATCGCCACAATCACAGGTTCGATTCATGTGGCCTGGCAGACATTTGATTTGAAAACAATTA
TGAG-AAAAATCAATAGGTTGGACGGACACAGCGAGTAAAAA-GAACTTAGAAAAACAAAAATGGTATCCATAGTATTAC
ATATTGTGCATACGAGAATAATAATCTGCTGTCTGAATTCCAGTCAAAATTTTAGTACTACTAA--TAATAGCACCACCT
AGAGGAATAATGAACAAGTATCAGAACCGGATATCACCAATAATCAGTTATTTACCGGACGCGACACAGTACAACCCGGC
ACCGTGATTGCAGAAAGAAAGAGATGTCTACTTTATCAACATGCTGCGCCATATGCCGCCAACAGACCGAGTACAGTGAC
ACCATAACAACAGACCTCC-AAAAAATTCTGAGGTAAGACAAGCTCGAGCAGCTCGACTAGACCATGTTCAATTCAAGCG
ACCACTTTTGCATCTTGGGCACAAGGCAGGGCAATCTAATGCAAATTGTACAGCAGAATATCAATACATCAGCCCCTGAG
CTATTTAGACAGGAATGGCCTCGCCGGTTCCCCAAGCACCTGCACTGCACCTCCATGAGATCACAAGCCATCCCGGCATC
GAGCACCATGGTGAACAAAACTGTG-ATATAAGGCTACCCCCGGATCCACTTTATTTCTCCTGACTTTCCTCCTTTTCC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS------S---------------------S---S----------S------------S-------S-------
----S-----------S---------------------S--S-------S---------------------------S--
S---------------------------------------S-S--------------------------------S----
---------------------------------S--------------------------------------------SS
-----------S----------------------------------S---------------------------------
----------------S-------S-------------S-----------------------------------------
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----------------------------------------------------------------------------S---
-------S------S-----S-------------------------------------S---------------------
-------------------------------------------------------------S-S----------------
--------------S---------------------------------SS------------------------------
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---------------------------------------------------S-S--------------------------
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-----------------------------------------S----------------S---------------------
----------S---S-----------------------------------------------------------------
------------------------------------------S-------------------------------------
----------------------S-----------------------------S---------------------------
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-------------S-------------------------------------------------------------S----
-------------------------------------------------------S------------------------
---------------S----------S------------S-S----------SS-SS-----------------------
--------S-----S--------S-------------------------------------------S------------
--------------S-------S---------------------------------------------------------
--------------------------------------S-------S---------------------------------
-S----------------------------------------S------S------------------------------
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-----------------------------------------------S--------------------------------
----------------------------------S--------------------S--------S--S------------
---------------------------S----------------------------------------------------
-------------------------S----------------------------------------------------S-
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>forward_238
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----------------------------------------------------------CATCAACGGCTATGGCATGC--
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>reverse_2927
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----------------------------------------------ATGGCCTGGCAGACATTTGA--------------
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