Multiple sequence alignment - TraesCS2B01G482100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G482100 chr2B 100.000 2312 0 0 1 2312 680047847 680045536 0.000000e+00 4270.0
1 TraesCS2B01G482100 chr2B 90.196 51 4 1 437 486 5653868 5653918 5.330000e-07 65.8
2 TraesCS2B01G482100 chr2D 86.048 1584 80 59 635 2139 567049346 567047825 0.000000e+00 1570.0
3 TraesCS2B01G482100 chr2D 97.388 268 7 0 3 270 439454340 439454073 7.530000e-125 457.0
4 TraesCS2B01G482100 chr2D 96.337 273 9 1 2 274 38508773 38508502 4.530000e-122 448.0
5 TraesCS2B01G482100 chr2D 92.771 83 3 1 480 559 567049422 567049340 1.450000e-22 117.0
6 TraesCS2B01G482100 chr2D 97.297 37 1 0 1171 1207 567594931 567594895 1.920000e-06 63.9
7 TraesCS2B01G482100 chr2D 100.000 31 0 0 452 482 595409387 595409417 8.920000e-05 58.4
8 TraesCS2B01G482100 chr2D 100.000 30 0 0 453 482 567934833 567934804 3.210000e-04 56.5
9 TraesCS2B01G482100 chr7B 96.739 276 7 2 3 278 69043764 69043491 2.090000e-125 459.0
10 TraesCS2B01G482100 chr7B 90.351 114 9 2 1896 2008 376360346 376360234 5.150000e-32 148.0
11 TraesCS2B01G482100 chr5A 97.736 265 6 0 3 267 685905173 685904909 7.530000e-125 457.0
12 TraesCS2B01G482100 chr5A 97.388 268 7 0 3 270 685912445 685912178 7.530000e-125 457.0
13 TraesCS2B01G482100 chr5A 91.892 296 20 3 3 297 331368245 331368537 5.950000e-111 411.0
14 TraesCS2B01G482100 chr5A 93.333 105 6 1 1892 1996 395077832 395077935 1.110000e-33 154.0
15 TraesCS2B01G482100 chr5A 89.130 46 5 0 437 482 349620458 349620413 8.920000e-05 58.4
16 TraesCS2B01G482100 chr3B 97.736 265 6 0 3 267 109936841 109937105 7.530000e-125 457.0
17 TraesCS2B01G482100 chr3B 89.437 284 26 4 9 291 372204367 372204087 2.830000e-94 355.0
18 TraesCS2B01G482100 chr1B 97.388 268 7 0 3 270 247588796 247588529 7.530000e-125 457.0
19 TraesCS2B01G482100 chr1B 97.727 264 6 0 3 266 88414997 88414734 2.710000e-124 455.0
20 TraesCS2B01G482100 chrUn 97.727 264 6 0 3 266 167984108 167983845 2.710000e-124 455.0
21 TraesCS2B01G482100 chrUn 90.598 117 9 2 1895 2010 32221472 32221357 1.110000e-33 154.0
22 TraesCS2B01G482100 chrUn 90.698 43 4 0 441 483 15929678 15929636 8.920000e-05 58.4
23 TraesCS2B01G482100 chr4D 94.077 287 15 2 3 288 228429679 228429964 3.530000e-118 435.0
24 TraesCS2B01G482100 chr2A 81.858 452 40 25 1378 1811 706894438 706894011 2.200000e-90 342.0
25 TraesCS2B01G482100 chr2A 81.959 388 44 13 998 1378 706894841 706894473 2.890000e-79 305.0
26 TraesCS2B01G482100 chr2A 85.202 223 12 10 1847 2051 706894010 706893791 2.330000e-50 209.0
27 TraesCS2B01G482100 chr2A 90.722 97 7 2 2216 2310 706893548 706893452 6.700000e-26 128.0
28 TraesCS2B01G482100 chr2A 93.617 47 3 0 1172 1218 706903741 706903695 1.150000e-08 71.3
29 TraesCS2B01G482100 chr2A 90.385 52 4 1 1171 1222 706919438 706919388 1.480000e-07 67.6
30 TraesCS2B01G482100 chr2A 83.562 73 6 3 1137 1203 706922657 706922585 1.920000e-06 63.9
31 TraesCS2B01G482100 chr2A 96.970 33 1 0 279 311 730641446 730641478 3.210000e-04 56.5
32 TraesCS2B01G482100 chr6D 94.175 103 4 2 1896 1998 407469170 407469070 3.080000e-34 156.0
33 TraesCS2B01G482100 chr5D 92.523 107 4 4 1896 2002 302870301 302870199 1.430000e-32 150.0
34 TraesCS2B01G482100 chr5D 82.243 107 14 4 265 366 233070283 233070389 1.140000e-13 87.9
35 TraesCS2B01G482100 chr7D 90.435 115 8 3 1896 2008 382122499 382122386 5.150000e-32 148.0
36 TraesCS2B01G482100 chr7D 83.621 116 15 3 272 383 634885998 634885883 3.140000e-19 106.0
37 TraesCS2B01G482100 chr4A 89.167 120 11 2 1889 2006 679256507 679256626 5.150000e-32 148.0
38 TraesCS2B01G482100 chr4B 94.872 39 2 0 442 480 614045734 614045772 6.900000e-06 62.1
39 TraesCS2B01G482100 chr1A 88.235 51 6 0 433 483 372300261 372300211 6.900000e-06 62.1
40 TraesCS2B01G482100 chr1D 100.000 30 0 0 451 480 472536630 472536601 3.210000e-04 56.5
41 TraesCS2B01G482100 chr5B 100.000 28 0 0 453 480 233712895 233712922 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G482100 chr2B 680045536 680047847 2311 True 4270.0 4270 100.00000 1 2312 1 chr2B.!!$R1 2311
1 TraesCS2B01G482100 chr2D 567047825 567049422 1597 True 843.5 1570 89.40950 480 2139 2 chr2D.!!$R5 1659
2 TraesCS2B01G482100 chr2A 706893452 706894841 1389 True 246.0 342 84.93525 998 2310 4 chr2A.!!$R2 1312

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 615 0.108138 GGTGTACCTGCTCGCTTGAT 60.108 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2206 2355 0.034896 ACGAATGGTGGACGCTCTTT 59.965 50.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.682943 TTTTCGTTCTGTATCCCAGTTTG 57.317 39.130 0.00 0.00 42.19 2.93
24 25 4.345859 TTCGTTCTGTATCCCAGTTTGT 57.654 40.909 0.00 0.00 42.19 2.83
25 26 3.659786 TCGTTCTGTATCCCAGTTTGTG 58.340 45.455 0.00 0.00 42.19 3.33
26 27 2.159627 CGTTCTGTATCCCAGTTTGTGC 59.840 50.000 0.00 0.00 42.19 4.57
27 28 3.412386 GTTCTGTATCCCAGTTTGTGCT 58.588 45.455 0.00 0.00 42.19 4.40
28 29 4.575885 GTTCTGTATCCCAGTTTGTGCTA 58.424 43.478 0.00 0.00 42.19 3.49
29 30 4.471904 TCTGTATCCCAGTTTGTGCTAG 57.528 45.455 0.00 0.00 42.19 3.42
30 31 2.939103 CTGTATCCCAGTTTGTGCTAGC 59.061 50.000 8.10 8.10 36.37 3.42
31 32 2.289565 GTATCCCAGTTTGTGCTAGCC 58.710 52.381 13.29 4.15 0.00 3.93
32 33 0.698238 ATCCCAGTTTGTGCTAGCCA 59.302 50.000 13.29 7.05 0.00 4.75
33 34 0.698238 TCCCAGTTTGTGCTAGCCAT 59.302 50.000 13.29 0.00 0.00 4.40
34 35 1.098050 CCCAGTTTGTGCTAGCCATC 58.902 55.000 13.29 3.48 0.00 3.51
35 36 1.340405 CCCAGTTTGTGCTAGCCATCT 60.340 52.381 13.29 8.50 0.00 2.90
36 37 2.440409 CCAGTTTGTGCTAGCCATCTT 58.560 47.619 13.29 0.00 0.00 2.40
37 38 3.609853 CCAGTTTGTGCTAGCCATCTTA 58.390 45.455 13.29 0.00 0.00 2.10
38 39 4.202441 CCAGTTTGTGCTAGCCATCTTAT 58.798 43.478 13.29 0.00 0.00 1.73
39 40 4.036027 CCAGTTTGTGCTAGCCATCTTATG 59.964 45.833 13.29 3.21 0.00 1.90
52 53 5.913137 CCATCTTATGGCACCTTGTTTAA 57.087 39.130 0.00 0.00 44.70 1.52
53 54 5.650543 CCATCTTATGGCACCTTGTTTAAC 58.349 41.667 0.00 0.00 44.70 2.01
54 55 5.418840 CCATCTTATGGCACCTTGTTTAACT 59.581 40.000 0.00 0.00 44.70 2.24
55 56 6.071391 CCATCTTATGGCACCTTGTTTAACTT 60.071 38.462 0.00 0.00 44.70 2.66
56 57 7.122055 CCATCTTATGGCACCTTGTTTAACTTA 59.878 37.037 0.00 0.00 44.70 2.24
57 58 8.686334 CATCTTATGGCACCTTGTTTAACTTAT 58.314 33.333 0.00 0.00 0.00 1.73
58 59 8.050778 TCTTATGGCACCTTGTTTAACTTATG 57.949 34.615 0.00 0.00 0.00 1.90
59 60 7.668052 TCTTATGGCACCTTGTTTAACTTATGT 59.332 33.333 0.00 0.00 0.00 2.29
60 61 5.699097 TGGCACCTTGTTTAACTTATGTC 57.301 39.130 0.00 0.00 0.00 3.06
61 62 5.381757 TGGCACCTTGTTTAACTTATGTCT 58.618 37.500 0.00 0.00 0.00 3.41
62 63 5.240623 TGGCACCTTGTTTAACTTATGTCTG 59.759 40.000 0.00 0.00 0.00 3.51
63 64 5.240844 GGCACCTTGTTTAACTTATGTCTGT 59.759 40.000 0.00 0.00 0.00 3.41
64 65 6.428771 GGCACCTTGTTTAACTTATGTCTGTA 59.571 38.462 0.00 0.00 0.00 2.74
65 66 7.295930 GCACCTTGTTTAACTTATGTCTGTAC 58.704 38.462 0.00 0.00 0.00 2.90
66 67 7.172703 GCACCTTGTTTAACTTATGTCTGTACT 59.827 37.037 0.00 0.00 0.00 2.73
67 68 8.709646 CACCTTGTTTAACTTATGTCTGTACTC 58.290 37.037 0.00 0.00 0.00 2.59
68 69 8.426489 ACCTTGTTTAACTTATGTCTGTACTCA 58.574 33.333 0.00 0.00 0.00 3.41
69 70 8.926710 CCTTGTTTAACTTATGTCTGTACTCAG 58.073 37.037 0.00 0.00 42.54 3.35
70 71 9.692749 CTTGTTTAACTTATGTCTGTACTCAGA 57.307 33.333 0.00 0.00 46.85 3.27
83 84 6.341316 TCTGTACTCAGATATTGTTGCTTCC 58.659 40.000 0.00 0.00 44.58 3.46
84 85 5.109210 TGTACTCAGATATTGTTGCTTCCG 58.891 41.667 0.00 0.00 0.00 4.30
85 86 2.939103 ACTCAGATATTGTTGCTTCCGC 59.061 45.455 0.00 0.00 0.00 5.54
86 87 3.201290 CTCAGATATTGTTGCTTCCGCT 58.799 45.455 0.00 0.00 36.97 5.52
87 88 2.938451 TCAGATATTGTTGCTTCCGCTG 59.062 45.455 0.00 0.00 36.97 5.18
88 89 2.938451 CAGATATTGTTGCTTCCGCTGA 59.062 45.455 0.00 0.00 36.97 4.26
89 90 2.939103 AGATATTGTTGCTTCCGCTGAC 59.061 45.455 0.00 0.00 36.97 3.51
90 91 2.472695 TATTGTTGCTTCCGCTGACT 57.527 45.000 0.00 0.00 36.97 3.41
91 92 1.160137 ATTGTTGCTTCCGCTGACTC 58.840 50.000 0.00 0.00 36.97 3.36
92 93 1.221466 TTGTTGCTTCCGCTGACTCG 61.221 55.000 0.00 0.00 36.97 4.18
93 94 1.664965 GTTGCTTCCGCTGACTCGT 60.665 57.895 0.00 0.00 36.97 4.18
94 95 1.372997 TTGCTTCCGCTGACTCGTC 60.373 57.895 0.00 0.00 36.97 4.20
95 96 1.806461 TTGCTTCCGCTGACTCGTCT 61.806 55.000 0.00 0.00 36.97 4.18
96 97 0.958876 TGCTTCCGCTGACTCGTCTA 60.959 55.000 0.00 0.00 36.97 2.59
97 98 0.382515 GCTTCCGCTGACTCGTCTAT 59.617 55.000 0.00 0.00 0.00 1.98
98 99 1.862008 GCTTCCGCTGACTCGTCTATG 60.862 57.143 0.00 0.00 0.00 2.23
99 100 1.671328 CTTCCGCTGACTCGTCTATGA 59.329 52.381 0.00 0.00 0.00 2.15
100 101 1.968704 TCCGCTGACTCGTCTATGAT 58.031 50.000 0.00 0.00 0.00 2.45
101 102 1.874231 TCCGCTGACTCGTCTATGATC 59.126 52.381 0.00 0.00 0.00 2.92
102 103 1.399087 CCGCTGACTCGTCTATGATCG 60.399 57.143 0.00 0.00 0.00 3.69
103 104 1.527311 CGCTGACTCGTCTATGATCGA 59.473 52.381 0.00 0.00 34.88 3.59
109 110 3.617540 CTCGTCTATGATCGAGCACTT 57.382 47.619 5.03 0.00 44.82 3.16
110 111 3.295785 CTCGTCTATGATCGAGCACTTG 58.704 50.000 5.03 0.00 44.82 3.16
111 112 2.683362 TCGTCTATGATCGAGCACTTGT 59.317 45.455 5.03 0.00 0.00 3.16
112 113 3.875134 TCGTCTATGATCGAGCACTTGTA 59.125 43.478 5.03 0.00 0.00 2.41
113 114 3.969352 CGTCTATGATCGAGCACTTGTAC 59.031 47.826 5.03 0.00 0.00 2.90
114 115 4.260825 CGTCTATGATCGAGCACTTGTACT 60.261 45.833 5.03 0.00 0.00 2.73
115 116 5.209240 GTCTATGATCGAGCACTTGTACTC 58.791 45.833 5.03 0.00 0.00 2.59
120 121 3.037485 GAGCACTTGTACTCGAGCC 57.963 57.895 13.61 3.82 0.00 4.70
121 122 0.458716 GAGCACTTGTACTCGAGCCC 60.459 60.000 13.61 3.40 0.00 5.19
122 123 0.900647 AGCACTTGTACTCGAGCCCT 60.901 55.000 13.61 0.00 0.00 5.19
123 124 0.458716 GCACTTGTACTCGAGCCCTC 60.459 60.000 13.61 1.04 0.00 4.30
148 149 4.510038 GCCCTTGGCTTGTATTATGATG 57.490 45.455 0.00 0.00 46.69 3.07
149 150 3.305608 GCCCTTGGCTTGTATTATGATGC 60.306 47.826 0.00 0.00 46.69 3.91
150 151 4.147321 CCCTTGGCTTGTATTATGATGCT 58.853 43.478 0.00 0.00 0.00 3.79
151 152 4.586001 CCCTTGGCTTGTATTATGATGCTT 59.414 41.667 0.00 0.00 0.00 3.91
152 153 5.508489 CCCTTGGCTTGTATTATGATGCTTG 60.508 44.000 0.00 0.00 0.00 4.01
153 154 5.068198 CCTTGGCTTGTATTATGATGCTTGT 59.932 40.000 0.00 0.00 0.00 3.16
154 155 6.262944 CCTTGGCTTGTATTATGATGCTTGTA 59.737 38.462 0.00 0.00 0.00 2.41
155 156 7.040201 CCTTGGCTTGTATTATGATGCTTGTAT 60.040 37.037 0.00 0.00 0.00 2.29
156 157 7.205737 TGGCTTGTATTATGATGCTTGTATG 57.794 36.000 0.00 0.00 0.00 2.39
157 158 6.997476 TGGCTTGTATTATGATGCTTGTATGA 59.003 34.615 0.00 0.00 0.00 2.15
158 159 7.041167 TGGCTTGTATTATGATGCTTGTATGAC 60.041 37.037 0.00 0.00 0.00 3.06
159 160 7.173907 GGCTTGTATTATGATGCTTGTATGACT 59.826 37.037 0.00 0.00 0.00 3.41
160 161 8.562892 GCTTGTATTATGATGCTTGTATGACTT 58.437 33.333 0.00 0.00 0.00 3.01
192 193 8.902540 TTTGTAGAGTTGTGTTGTGATATCTT 57.097 30.769 3.98 0.00 0.00 2.40
193 194 8.534333 TTGTAGAGTTGTGTTGTGATATCTTC 57.466 34.615 3.98 0.00 0.00 2.87
194 195 7.896811 TGTAGAGTTGTGTTGTGATATCTTCT 58.103 34.615 3.98 0.00 0.00 2.85
195 196 8.029522 TGTAGAGTTGTGTTGTGATATCTTCTC 58.970 37.037 3.98 0.00 0.00 2.87
196 197 6.096036 AGAGTTGTGTTGTGATATCTTCTCG 58.904 40.000 3.98 0.00 0.00 4.04
197 198 5.784177 AGTTGTGTTGTGATATCTTCTCGT 58.216 37.500 3.98 0.00 0.00 4.18
198 199 5.635280 AGTTGTGTTGTGATATCTTCTCGTG 59.365 40.000 3.98 0.00 0.00 4.35
199 200 5.385509 TGTGTTGTGATATCTTCTCGTGA 57.614 39.130 3.98 0.00 0.00 4.35
200 201 5.402398 TGTGTTGTGATATCTTCTCGTGAG 58.598 41.667 3.98 0.00 0.00 3.51
201 202 5.048013 TGTGTTGTGATATCTTCTCGTGAGT 60.048 40.000 3.98 0.00 0.00 3.41
202 203 5.513495 GTGTTGTGATATCTTCTCGTGAGTC 59.487 44.000 3.98 0.00 0.00 3.36
203 204 4.902443 TGTGATATCTTCTCGTGAGTCC 57.098 45.455 3.98 0.00 0.00 3.85
204 205 3.632604 TGTGATATCTTCTCGTGAGTCCC 59.367 47.826 3.98 0.00 0.00 4.46
205 206 3.886505 GTGATATCTTCTCGTGAGTCCCT 59.113 47.826 3.98 0.00 0.00 4.20
206 207 3.885901 TGATATCTTCTCGTGAGTCCCTG 59.114 47.826 3.98 0.00 0.00 4.45
207 208 2.516227 ATCTTCTCGTGAGTCCCTGA 57.484 50.000 0.00 0.00 0.00 3.86
208 209 2.516227 TCTTCTCGTGAGTCCCTGAT 57.484 50.000 0.00 0.00 0.00 2.90
209 210 2.370349 TCTTCTCGTGAGTCCCTGATC 58.630 52.381 0.00 0.00 0.00 2.92
210 211 2.025793 TCTTCTCGTGAGTCCCTGATCT 60.026 50.000 0.00 0.00 0.00 2.75
211 212 2.516227 TCTCGTGAGTCCCTGATCTT 57.484 50.000 0.00 0.00 0.00 2.40
212 213 2.095461 TCTCGTGAGTCCCTGATCTTG 58.905 52.381 0.00 0.00 0.00 3.02
213 214 2.095461 CTCGTGAGTCCCTGATCTTGA 58.905 52.381 0.00 0.00 0.00 3.02
214 215 2.692557 CTCGTGAGTCCCTGATCTTGAT 59.307 50.000 0.00 0.00 0.00 2.57
215 216 2.690497 TCGTGAGTCCCTGATCTTGATC 59.310 50.000 3.82 3.82 0.00 2.92
216 217 2.542618 CGTGAGTCCCTGATCTTGATCG 60.543 54.545 6.19 2.03 0.00 3.69
217 218 2.428890 GTGAGTCCCTGATCTTGATCGT 59.571 50.000 6.19 0.00 0.00 3.73
218 219 3.632604 GTGAGTCCCTGATCTTGATCGTA 59.367 47.826 6.19 0.00 0.00 3.43
219 220 3.632604 TGAGTCCCTGATCTTGATCGTAC 59.367 47.826 6.19 2.53 0.00 3.67
220 221 3.632333 AGTCCCTGATCTTGATCGTACA 58.368 45.455 6.19 0.00 0.00 2.90
221 222 3.381908 AGTCCCTGATCTTGATCGTACAC 59.618 47.826 6.19 1.73 0.00 2.90
222 223 2.357952 TCCCTGATCTTGATCGTACACG 59.642 50.000 6.19 0.00 41.45 4.49
223 224 2.099263 CCCTGATCTTGATCGTACACGT 59.901 50.000 1.19 0.00 40.80 4.49
224 225 3.428999 CCCTGATCTTGATCGTACACGTT 60.429 47.826 1.19 0.00 40.80 3.99
225 226 4.174009 CCTGATCTTGATCGTACACGTTT 58.826 43.478 1.19 0.00 40.80 3.60
226 227 4.031765 CCTGATCTTGATCGTACACGTTTG 59.968 45.833 1.19 0.00 40.80 2.93
227 228 3.366724 TGATCTTGATCGTACACGTTTGC 59.633 43.478 1.19 0.00 40.80 3.68
228 229 1.717113 TCTTGATCGTACACGTTTGCG 59.283 47.619 5.81 5.81 44.93 4.85
242 243 4.577687 CGTTTGCGTGTATGATTAGTGT 57.422 40.909 0.00 0.00 0.00 3.55
243 244 5.689927 CGTTTGCGTGTATGATTAGTGTA 57.310 39.130 0.00 0.00 0.00 2.90
244 245 5.478001 CGTTTGCGTGTATGATTAGTGTAC 58.522 41.667 0.00 0.00 0.00 2.90
245 246 5.478001 GTTTGCGTGTATGATTAGTGTACG 58.522 41.667 0.00 0.00 0.00 3.67
246 247 4.619437 TGCGTGTATGATTAGTGTACGA 57.381 40.909 0.00 0.00 32.36 3.43
247 248 5.177725 TGCGTGTATGATTAGTGTACGAT 57.822 39.130 0.00 0.00 32.36 3.73
248 249 5.584442 TGCGTGTATGATTAGTGTACGATT 58.416 37.500 0.00 0.00 32.36 3.34
249 250 5.457473 TGCGTGTATGATTAGTGTACGATTG 59.543 40.000 0.00 0.00 32.36 2.67
250 251 5.684184 GCGTGTATGATTAGTGTACGATTGA 59.316 40.000 0.00 0.00 32.36 2.57
251 252 6.197655 GCGTGTATGATTAGTGTACGATTGAA 59.802 38.462 0.00 0.00 32.36 2.69
252 253 7.096189 GCGTGTATGATTAGTGTACGATTGAAT 60.096 37.037 0.00 0.00 32.36 2.57
253 254 8.417928 CGTGTATGATTAGTGTACGATTGAATC 58.582 37.037 0.00 0.00 32.36 2.52
262 263 4.235731 GATTGAATCGGGGGCGTT 57.764 55.556 0.00 0.00 0.00 4.84
263 264 3.390003 GATTGAATCGGGGGCGTTA 57.610 52.632 0.00 0.00 0.00 3.18
264 265 0.942252 GATTGAATCGGGGGCGTTAC 59.058 55.000 0.00 0.00 0.00 2.50
265 266 0.253610 ATTGAATCGGGGGCGTTACA 59.746 50.000 0.00 0.00 0.00 2.41
266 267 0.391927 TTGAATCGGGGGCGTTACAG 60.392 55.000 0.00 0.00 0.00 2.74
267 268 1.523032 GAATCGGGGGCGTTACAGG 60.523 63.158 0.00 0.00 0.00 4.00
268 269 2.248086 GAATCGGGGGCGTTACAGGT 62.248 60.000 0.00 0.00 0.00 4.00
269 270 1.844544 AATCGGGGGCGTTACAGGTT 61.845 55.000 0.00 0.00 0.00 3.50
270 271 1.844544 ATCGGGGGCGTTACAGGTTT 61.845 55.000 0.00 0.00 0.00 3.27
271 272 2.329614 CGGGGGCGTTACAGGTTTG 61.330 63.158 0.00 0.00 0.00 2.93
272 273 2.632544 GGGGGCGTTACAGGTTTGC 61.633 63.158 0.00 0.00 0.00 3.68
273 274 1.602605 GGGGCGTTACAGGTTTGCT 60.603 57.895 0.00 0.00 0.00 3.91
274 275 1.583495 GGGGCGTTACAGGTTTGCTC 61.583 60.000 0.00 0.00 0.00 4.26
275 276 1.495951 GGCGTTACAGGTTTGCTCG 59.504 57.895 0.00 0.00 0.00 5.03
276 277 1.495951 GCGTTACAGGTTTGCTCGG 59.504 57.895 0.00 0.00 0.00 4.63
277 278 1.908066 GCGTTACAGGTTTGCTCGGG 61.908 60.000 0.00 0.00 0.00 5.14
278 279 1.873863 GTTACAGGTTTGCTCGGGC 59.126 57.895 0.00 0.00 39.26 6.13
279 280 1.302993 TTACAGGTTTGCTCGGGCC 60.303 57.895 3.94 0.00 37.74 5.80
280 281 2.757980 TTACAGGTTTGCTCGGGCCC 62.758 60.000 13.57 13.57 37.74 5.80
283 284 4.759205 GGTTTGCTCGGGCCCCAT 62.759 66.667 18.66 0.00 37.74 4.00
284 285 2.274104 GTTTGCTCGGGCCCCATA 59.726 61.111 18.66 0.13 37.74 2.74
285 286 1.152756 GTTTGCTCGGGCCCCATAT 60.153 57.895 18.66 0.00 37.74 1.78
286 287 1.150536 TTTGCTCGGGCCCCATATC 59.849 57.895 18.66 1.33 37.74 1.63
287 288 2.351924 TTTGCTCGGGCCCCATATCC 62.352 60.000 18.66 0.00 37.74 2.59
288 289 4.394712 GCTCGGGCCCCATATCCG 62.395 72.222 18.66 1.85 44.59 4.18
289 290 2.923035 CTCGGGCCCCATATCCGT 60.923 66.667 18.66 0.00 43.75 4.69
290 291 2.920912 TCGGGCCCCATATCCGTC 60.921 66.667 18.66 0.00 43.75 4.79
291 292 2.923035 CGGGCCCCATATCCGTCT 60.923 66.667 18.66 0.00 39.04 4.18
292 293 2.943978 CGGGCCCCATATCCGTCTC 61.944 68.421 18.66 0.00 39.04 3.36
293 294 1.841556 GGGCCCCATATCCGTCTCA 60.842 63.158 12.23 0.00 0.00 3.27
294 295 1.201429 GGGCCCCATATCCGTCTCAT 61.201 60.000 12.23 0.00 0.00 2.90
295 296 1.568504 GGCCCCATATCCGTCTCATA 58.431 55.000 0.00 0.00 0.00 2.15
296 297 2.119495 GGCCCCATATCCGTCTCATAT 58.881 52.381 0.00 0.00 0.00 1.78
297 298 2.505819 GGCCCCATATCCGTCTCATATT 59.494 50.000 0.00 0.00 0.00 1.28
298 299 3.054361 GGCCCCATATCCGTCTCATATTT 60.054 47.826 0.00 0.00 0.00 1.40
299 300 3.941483 GCCCCATATCCGTCTCATATTTG 59.059 47.826 0.00 0.00 0.00 2.32
300 301 4.517285 CCCCATATCCGTCTCATATTTGG 58.483 47.826 0.00 0.00 0.00 3.28
301 302 4.517285 CCCATATCCGTCTCATATTTGGG 58.483 47.826 0.00 0.00 36.13 4.12
302 303 4.019321 CCCATATCCGTCTCATATTTGGGT 60.019 45.833 0.00 0.00 37.21 4.51
303 304 5.514834 CCCATATCCGTCTCATATTTGGGTT 60.515 44.000 0.00 0.00 37.21 4.11
304 305 5.412594 CCATATCCGTCTCATATTTGGGTTG 59.587 44.000 0.00 0.00 0.00 3.77
305 306 4.771114 ATCCGTCTCATATTTGGGTTGA 57.229 40.909 0.00 0.00 0.00 3.18
306 307 4.561500 TCCGTCTCATATTTGGGTTGAA 57.438 40.909 0.00 0.00 0.00 2.69
307 308 5.110814 TCCGTCTCATATTTGGGTTGAAT 57.889 39.130 0.00 0.00 0.00 2.57
308 309 6.241882 TCCGTCTCATATTTGGGTTGAATA 57.758 37.500 0.00 0.00 0.00 1.75
309 310 6.837312 TCCGTCTCATATTTGGGTTGAATAT 58.163 36.000 0.00 0.00 31.57 1.28
310 311 6.710295 TCCGTCTCATATTTGGGTTGAATATG 59.290 38.462 9.46 9.46 43.73 1.78
311 312 6.072508 CCGTCTCATATTTGGGTTGAATATGG 60.073 42.308 13.73 7.50 43.09 2.74
312 313 6.072508 CGTCTCATATTTGGGTTGAATATGGG 60.073 42.308 13.73 11.65 44.08 4.00
313 314 7.004086 GTCTCATATTTGGGTTGAATATGGGA 58.996 38.462 12.86 12.86 46.75 4.37
314 315 7.768643 TCTCATATTTGGGTTGAATATGGGAT 58.231 34.615 12.86 0.00 45.31 3.85
315 316 7.670979 TCTCATATTTGGGTTGAATATGGGATG 59.329 37.037 12.86 5.29 45.31 3.51
316 317 4.961438 ATTTGGGTTGAATATGGGATGC 57.039 40.909 0.00 0.00 0.00 3.91
317 318 2.380064 TGGGTTGAATATGGGATGCC 57.620 50.000 0.00 0.00 0.00 4.40
318 319 1.247567 GGGTTGAATATGGGATGCCG 58.752 55.000 0.00 0.00 0.00 5.69
319 320 1.247567 GGTTGAATATGGGATGCCGG 58.752 55.000 0.00 0.00 0.00 6.13
320 321 1.478654 GGTTGAATATGGGATGCCGGT 60.479 52.381 1.90 0.00 0.00 5.28
321 322 1.880027 GTTGAATATGGGATGCCGGTC 59.120 52.381 1.90 0.00 0.00 4.79
322 323 1.135960 TGAATATGGGATGCCGGTCA 58.864 50.000 1.90 1.38 0.00 4.02
323 324 1.072173 TGAATATGGGATGCCGGTCAG 59.928 52.381 1.90 0.00 0.00 3.51
324 325 0.250901 AATATGGGATGCCGGTCAGC 60.251 55.000 1.90 4.23 0.00 4.26
329 330 4.864334 GATGCCGGTCAGCCTGGG 62.864 72.222 1.90 0.00 0.00 4.45
345 346 3.357919 GGCGTTTTAGGCCCGTTT 58.642 55.556 0.00 0.00 42.98 3.60
346 347 1.081041 GGCGTTTTAGGCCCGTTTG 60.081 57.895 0.00 0.00 42.98 2.93
347 348 1.517210 GGCGTTTTAGGCCCGTTTGA 61.517 55.000 0.00 0.00 42.98 2.69
348 349 0.109919 GCGTTTTAGGCCCGTTTGAG 60.110 55.000 0.00 0.00 0.00 3.02
349 350 1.515081 CGTTTTAGGCCCGTTTGAGA 58.485 50.000 0.00 0.00 0.00 3.27
350 351 1.196127 CGTTTTAGGCCCGTTTGAGAC 59.804 52.381 0.00 0.00 0.00 3.36
360 361 2.645628 CGTTTGAGACGTCTGTTTGG 57.354 50.000 25.58 5.45 46.49 3.28
361 362 2.198406 CGTTTGAGACGTCTGTTTGGA 58.802 47.619 25.58 0.00 46.49 3.53
362 363 2.800544 CGTTTGAGACGTCTGTTTGGAT 59.199 45.455 25.58 0.00 46.49 3.41
363 364 3.120991 CGTTTGAGACGTCTGTTTGGATC 60.121 47.826 25.58 6.51 46.49 3.36
364 365 3.744238 TTGAGACGTCTGTTTGGATCA 57.256 42.857 25.58 9.39 0.00 2.92
365 366 3.744238 TGAGACGTCTGTTTGGATCAA 57.256 42.857 25.58 0.00 0.00 2.57
366 367 3.653344 TGAGACGTCTGTTTGGATCAAG 58.347 45.455 25.58 0.00 0.00 3.02
367 368 3.320826 TGAGACGTCTGTTTGGATCAAGA 59.679 43.478 25.58 0.00 0.00 3.02
368 369 4.202212 TGAGACGTCTGTTTGGATCAAGAA 60.202 41.667 25.58 0.00 0.00 2.52
369 370 4.703897 AGACGTCTGTTTGGATCAAGAAA 58.296 39.130 19.30 0.00 0.00 2.52
370 371 5.123227 AGACGTCTGTTTGGATCAAGAAAA 58.877 37.500 19.30 0.00 0.00 2.29
371 372 5.007724 AGACGTCTGTTTGGATCAAGAAAAC 59.992 40.000 19.30 0.69 34.97 2.43
372 373 4.211389 CGTCTGTTTGGATCAAGAAAACG 58.789 43.478 0.00 0.00 36.75 3.60
373 374 4.260620 CGTCTGTTTGGATCAAGAAAACGT 60.261 41.667 0.00 0.00 36.75 3.99
374 375 4.970003 GTCTGTTTGGATCAAGAAAACGTG 59.030 41.667 0.00 0.00 36.75 4.49
375 376 4.878971 TCTGTTTGGATCAAGAAAACGTGA 59.121 37.500 0.00 0.00 36.75 4.35
376 377 4.915704 TGTTTGGATCAAGAAAACGTGAC 58.084 39.130 0.00 0.00 36.75 3.67
377 378 4.201970 TGTTTGGATCAAGAAAACGTGACC 60.202 41.667 0.00 0.00 36.75 4.02
378 379 2.139917 TGGATCAAGAAAACGTGACCG 58.860 47.619 0.00 0.00 40.83 4.79
379 380 1.463444 GGATCAAGAAAACGTGACCGG 59.537 52.381 0.00 0.00 38.78 5.28
380 381 2.409975 GATCAAGAAAACGTGACCGGA 58.590 47.619 9.46 0.00 38.78 5.14
381 382 1.574134 TCAAGAAAACGTGACCGGAC 58.426 50.000 9.46 1.07 38.78 4.79
382 383 1.134759 TCAAGAAAACGTGACCGGACA 60.135 47.619 9.46 5.04 38.78 4.02
383 384 1.666700 CAAGAAAACGTGACCGGACAA 59.333 47.619 9.46 0.00 38.78 3.18
384 385 2.249844 AGAAAACGTGACCGGACAAT 57.750 45.000 9.46 0.00 38.78 2.71
385 386 2.140717 AGAAAACGTGACCGGACAATC 58.859 47.619 9.46 2.69 38.78 2.67
386 387 1.196127 GAAAACGTGACCGGACAATCC 59.804 52.381 9.46 0.00 38.78 3.01
410 411 0.437295 GGACACGTCCGTTTGAATCG 59.563 55.000 0.00 0.00 40.36 3.34
411 412 1.411394 GACACGTCCGTTTGAATCGA 58.589 50.000 0.00 0.00 0.00 3.59
412 413 1.385743 GACACGTCCGTTTGAATCGAG 59.614 52.381 0.00 0.00 0.00 4.04
413 414 1.001048 ACACGTCCGTTTGAATCGAGA 60.001 47.619 0.00 0.00 0.00 4.04
414 415 2.055838 CACGTCCGTTTGAATCGAGAA 58.944 47.619 0.00 0.00 0.00 2.87
415 416 2.473609 CACGTCCGTTTGAATCGAGAAA 59.526 45.455 0.00 0.00 0.00 2.52
416 417 3.060138 CACGTCCGTTTGAATCGAGAAAA 60.060 43.478 0.00 0.00 0.00 2.29
417 418 3.060070 ACGTCCGTTTGAATCGAGAAAAC 60.060 43.478 9.27 9.27 0.00 2.43
421 422 4.110186 CGTTTGAATCGAGAAAACGTGA 57.890 40.909 23.68 0.00 46.70 4.35
422 423 3.892552 CGTTTGAATCGAGAAAACGTGAC 59.107 43.478 23.68 2.73 46.70 3.67
423 424 4.209112 GTTTGAATCGAGAAAACGTGACC 58.791 43.478 0.00 0.00 34.70 4.02
424 425 2.055838 TGAATCGAGAAAACGTGACCG 58.944 47.619 0.00 0.00 40.83 4.79
425 426 1.389106 GAATCGAGAAAACGTGACCGG 59.611 52.381 0.00 0.00 38.78 5.28
426 427 0.599558 ATCGAGAAAACGTGACCGGA 59.400 50.000 9.46 0.00 38.78 5.14
427 428 0.318107 TCGAGAAAACGTGACCGGAC 60.318 55.000 9.46 1.07 38.78 4.79
428 429 0.595567 CGAGAAAACGTGACCGGACA 60.596 55.000 9.46 5.04 38.78 4.02
429 430 1.574134 GAGAAAACGTGACCGGACAA 58.426 50.000 9.46 0.00 38.78 3.18
430 431 2.140717 GAGAAAACGTGACCGGACAAT 58.859 47.619 9.46 0.00 38.78 2.71
431 432 2.140717 AGAAAACGTGACCGGACAATC 58.859 47.619 9.46 2.69 38.78 2.67
432 433 1.196127 GAAAACGTGACCGGACAATCC 59.804 52.381 9.46 0.00 38.78 3.01
450 451 3.324170 CGTTCGGACGTATGAAGCT 57.676 52.632 8.45 0.00 44.08 3.74
451 452 0.914551 CGTTCGGACGTATGAAGCTG 59.085 55.000 8.45 0.00 44.08 4.24
452 453 1.278238 GTTCGGACGTATGAAGCTGG 58.722 55.000 2.43 0.00 0.00 4.85
453 454 0.892755 TTCGGACGTATGAAGCTGGT 59.107 50.000 0.00 0.00 0.00 4.00
454 455 0.892755 TCGGACGTATGAAGCTGGTT 59.107 50.000 0.00 0.00 0.00 3.67
455 456 1.274167 TCGGACGTATGAAGCTGGTTT 59.726 47.619 0.00 0.00 0.00 3.27
456 457 1.393539 CGGACGTATGAAGCTGGTTTG 59.606 52.381 0.00 0.00 0.00 2.93
457 458 2.695359 GGACGTATGAAGCTGGTTTGA 58.305 47.619 0.00 0.00 0.00 2.69
458 459 2.673368 GGACGTATGAAGCTGGTTTGAG 59.327 50.000 0.00 0.00 0.00 3.02
459 460 3.585862 GACGTATGAAGCTGGTTTGAGA 58.414 45.455 0.00 0.00 0.00 3.27
460 461 3.589988 ACGTATGAAGCTGGTTTGAGAG 58.410 45.455 0.00 0.00 0.00 3.20
461 462 2.932614 CGTATGAAGCTGGTTTGAGAGG 59.067 50.000 0.00 0.00 0.00 3.69
462 463 3.617531 CGTATGAAGCTGGTTTGAGAGGT 60.618 47.826 0.00 0.00 0.00 3.85
463 464 2.550830 TGAAGCTGGTTTGAGAGGTC 57.449 50.000 0.00 0.00 0.00 3.85
464 465 2.050144 TGAAGCTGGTTTGAGAGGTCT 58.950 47.619 0.00 0.00 0.00 3.85
465 466 2.224378 TGAAGCTGGTTTGAGAGGTCTG 60.224 50.000 0.00 0.00 0.00 3.51
466 467 0.689623 AGCTGGTTTGAGAGGTCTGG 59.310 55.000 0.00 0.00 0.00 3.86
467 468 0.398318 GCTGGTTTGAGAGGTCTGGT 59.602 55.000 0.00 0.00 0.00 4.00
468 469 1.202818 GCTGGTTTGAGAGGTCTGGTT 60.203 52.381 0.00 0.00 0.00 3.67
469 470 2.498167 CTGGTTTGAGAGGTCTGGTTG 58.502 52.381 0.00 0.00 0.00 3.77
470 471 1.843851 TGGTTTGAGAGGTCTGGTTGT 59.156 47.619 0.00 0.00 0.00 3.32
471 472 3.042682 TGGTTTGAGAGGTCTGGTTGTA 58.957 45.455 0.00 0.00 0.00 2.41
472 473 3.071023 TGGTTTGAGAGGTCTGGTTGTAG 59.929 47.826 0.00 0.00 0.00 2.74
473 474 3.323979 GGTTTGAGAGGTCTGGTTGTAGA 59.676 47.826 0.00 0.00 0.00 2.59
474 475 4.020128 GGTTTGAGAGGTCTGGTTGTAGAT 60.020 45.833 0.00 0.00 0.00 1.98
475 476 4.808414 TTGAGAGGTCTGGTTGTAGATG 57.192 45.455 0.00 0.00 0.00 2.90
476 477 2.497675 TGAGAGGTCTGGTTGTAGATGC 59.502 50.000 0.00 0.00 0.00 3.91
477 478 2.763448 GAGAGGTCTGGTTGTAGATGCT 59.237 50.000 0.00 0.00 0.00 3.79
478 479 2.763448 AGAGGTCTGGTTGTAGATGCTC 59.237 50.000 0.00 0.00 0.00 4.26
495 496 1.202359 GCTCTAAGCTCGGAGTTCAGG 60.202 57.143 6.90 0.00 38.45 3.86
502 503 0.888619 CTCGGAGTTCAGGCTGTACA 59.111 55.000 23.56 4.70 0.00 2.90
530 534 8.507249 GCACACTCTGAATTACATAGAAACTTT 58.493 33.333 0.00 0.00 0.00 2.66
566 570 3.071495 CGTTGTTTCGGATGTGTGC 57.929 52.632 0.00 0.00 0.00 4.57
567 571 0.306228 CGTTGTTTCGGATGTGTGCA 59.694 50.000 0.00 0.00 0.00 4.57
568 572 1.753956 GTTGTTTCGGATGTGTGCAC 58.246 50.000 10.75 10.75 0.00 4.57
569 573 0.306228 TTGTTTCGGATGTGTGCACG 59.694 50.000 13.13 0.00 0.00 5.34
570 574 0.812014 TGTTTCGGATGTGTGCACGT 60.812 50.000 13.13 0.00 0.00 4.49
571 575 1.141645 GTTTCGGATGTGTGCACGTA 58.858 50.000 13.13 3.58 0.00 3.57
572 576 1.136446 GTTTCGGATGTGTGCACGTAC 60.136 52.381 13.13 6.35 0.00 3.67
573 577 3.069216 CGGATGTGTGCACGTACG 58.931 61.111 15.01 15.01 46.59 3.67
574 578 1.731613 CGGATGTGTGCACGTACGT 60.732 57.895 16.72 16.72 46.58 3.57
575 579 0.454789 CGGATGTGTGCACGTACGTA 60.455 55.000 22.34 3.16 46.58 3.57
576 580 0.986992 GGATGTGTGCACGTACGTAC 59.013 55.000 22.34 16.78 0.00 3.67
577 581 1.666599 GGATGTGTGCACGTACGTACA 60.667 52.381 22.34 21.21 0.00 2.90
578 582 1.384409 GATGTGTGCACGTACGTACAC 59.616 52.381 34.34 34.34 41.41 2.90
579 583 0.594540 TGTGTGCACGTACGTACACC 60.595 55.000 36.25 28.98 40.60 4.16
580 584 0.318107 GTGTGCACGTACGTACACCT 60.318 55.000 36.25 8.52 40.60 4.00
581 585 0.385029 TGTGCACGTACGTACACCTT 59.615 50.000 36.25 7.81 40.60 3.50
582 586 1.606189 TGTGCACGTACGTACACCTTA 59.394 47.619 36.25 22.41 40.60 2.69
583 587 1.978782 GTGCACGTACGTACACCTTAC 59.021 52.381 32.21 13.91 36.64 2.34
584 588 1.606189 TGCACGTACGTACACCTTACA 59.394 47.619 22.34 10.80 0.00 2.41
585 589 2.228582 TGCACGTACGTACACCTTACAT 59.771 45.455 22.34 0.00 0.00 2.29
586 590 2.595536 GCACGTACGTACACCTTACATG 59.404 50.000 22.34 5.14 0.00 3.21
587 591 3.825308 CACGTACGTACACCTTACATGT 58.175 45.455 22.34 2.69 0.00 3.21
588 592 3.605056 CACGTACGTACACCTTACATGTG 59.395 47.826 22.34 16.03 39.63 3.21
590 594 4.454161 ACGTACGTACACCTTACATGTGTA 59.546 41.667 21.41 0.00 44.73 2.90
599 603 3.514645 CCTTACATGTGTACGGTGTACC 58.485 50.000 9.11 0.00 35.79 3.34
600 604 3.194116 CCTTACATGTGTACGGTGTACCT 59.806 47.826 9.11 0.00 35.79 3.08
601 605 2.736144 ACATGTGTACGGTGTACCTG 57.264 50.000 0.00 3.20 0.00 4.00
602 606 1.337447 ACATGTGTACGGTGTACCTGC 60.337 52.381 0.00 0.00 0.00 4.85
603 607 1.067142 CATGTGTACGGTGTACCTGCT 60.067 52.381 4.78 0.00 0.00 4.24
604 608 0.599558 TGTGTACGGTGTACCTGCTC 59.400 55.000 4.78 0.00 0.00 4.26
605 609 0.455633 GTGTACGGTGTACCTGCTCG 60.456 60.000 4.78 0.00 0.00 5.03
606 610 1.515736 GTACGGTGTACCTGCTCGC 60.516 63.158 0.00 0.00 0.00 5.03
607 611 1.676635 TACGGTGTACCTGCTCGCT 60.677 57.895 0.00 0.00 0.00 4.93
608 612 1.246056 TACGGTGTACCTGCTCGCTT 61.246 55.000 0.00 0.00 0.00 4.68
609 613 2.094659 CGGTGTACCTGCTCGCTTG 61.095 63.158 0.00 0.00 0.00 4.01
610 614 1.292223 GGTGTACCTGCTCGCTTGA 59.708 57.895 0.00 0.00 0.00 3.02
611 615 0.108138 GGTGTACCTGCTCGCTTGAT 60.108 55.000 0.00 0.00 0.00 2.57
612 616 1.676014 GGTGTACCTGCTCGCTTGATT 60.676 52.381 0.00 0.00 0.00 2.57
613 617 1.661112 GTGTACCTGCTCGCTTGATTC 59.339 52.381 0.00 0.00 0.00 2.52
614 618 1.550524 TGTACCTGCTCGCTTGATTCT 59.449 47.619 0.00 0.00 0.00 2.40
615 619 1.929836 GTACCTGCTCGCTTGATTCTG 59.070 52.381 0.00 0.00 0.00 3.02
616 620 1.023513 ACCTGCTCGCTTGATTCTGC 61.024 55.000 0.00 0.00 0.00 4.26
625 629 3.968953 GCTTGATTCTGCGAGATATCG 57.031 47.619 5.13 5.13 0.00 2.92
626 630 3.312828 GCTTGATTCTGCGAGATATCGT 58.687 45.455 11.90 0.00 35.26 3.73
627 631 3.738282 GCTTGATTCTGCGAGATATCGTT 59.262 43.478 11.90 0.00 35.26 3.85
628 632 4.917998 GCTTGATTCTGCGAGATATCGTTA 59.082 41.667 11.90 0.26 35.26 3.18
629 633 5.574830 GCTTGATTCTGCGAGATATCGTTAT 59.425 40.000 11.90 0.15 35.26 1.89
630 634 6.237437 GCTTGATTCTGCGAGATATCGTTATC 60.237 42.308 11.90 9.39 35.41 1.75
631 635 6.502136 TGATTCTGCGAGATATCGTTATCT 57.498 37.500 14.46 14.46 45.84 1.98
632 636 6.914259 TGATTCTGCGAGATATCGTTATCTT 58.086 36.000 15.43 0.54 43.71 2.40
633 637 6.803807 TGATTCTGCGAGATATCGTTATCTTG 59.196 38.462 20.02 20.02 43.71 3.02
634 638 5.048153 TCTGCGAGATATCGTTATCTTGG 57.952 43.478 23.35 16.36 43.71 3.61
635 639 4.519350 TCTGCGAGATATCGTTATCTTGGT 59.481 41.667 23.35 3.64 43.71 3.67
636 640 5.009710 TCTGCGAGATATCGTTATCTTGGTT 59.990 40.000 23.35 3.34 43.71 3.67
637 641 5.597806 TGCGAGATATCGTTATCTTGGTTT 58.402 37.500 23.35 2.76 43.71 3.27
638 642 5.462068 TGCGAGATATCGTTATCTTGGTTTG 59.538 40.000 23.35 7.38 43.71 2.93
639 643 5.107453 GCGAGATATCGTTATCTTGGTTTGG 60.107 44.000 23.35 5.03 43.71 3.28
648 652 6.016943 TCGTTATCTTGGTTTGGTTTGGTTAG 60.017 38.462 0.00 0.00 0.00 2.34
676 680 1.640069 CGGCGCTTCATGATCTGTG 59.360 57.895 7.64 0.00 0.00 3.66
716 727 5.067273 TGAAGTACAAACGGATTCCACAAT 58.933 37.500 3.09 0.00 0.00 2.71
719 730 5.313712 AGTACAAACGGATTCCACAATTCT 58.686 37.500 3.09 0.00 0.00 2.40
766 777 5.412594 ACAAACTATGTGCTTCATCGTTGAT 59.587 36.000 10.91 3.52 40.12 2.57
817 828 4.588528 AGGCACATTGACAAGGTTTACATT 59.411 37.500 2.05 0.00 0.00 2.71
836 847 6.114187 ACATTGATGACAGAGTAGGAACAA 57.886 37.500 0.00 0.00 0.00 2.83
840 851 5.784177 TGATGACAGAGTAGGAACAAGAAC 58.216 41.667 0.00 0.00 0.00 3.01
841 852 4.602340 TGACAGAGTAGGAACAAGAACC 57.398 45.455 0.00 0.00 0.00 3.62
842 853 4.223953 TGACAGAGTAGGAACAAGAACCT 58.776 43.478 0.00 0.00 39.95 3.50
843 854 4.039245 TGACAGAGTAGGAACAAGAACCTG 59.961 45.833 0.00 0.00 37.68 4.00
844 855 4.223953 ACAGAGTAGGAACAAGAACCTGA 58.776 43.478 0.00 0.00 37.68 3.86
845 856 4.654262 ACAGAGTAGGAACAAGAACCTGAA 59.346 41.667 0.00 0.00 37.68 3.02
846 857 4.991687 CAGAGTAGGAACAAGAACCTGAAC 59.008 45.833 0.00 0.00 37.68 3.18
847 858 4.654262 AGAGTAGGAACAAGAACCTGAACA 59.346 41.667 0.00 0.00 37.68 3.18
848 859 5.308237 AGAGTAGGAACAAGAACCTGAACAT 59.692 40.000 0.00 0.00 37.68 2.71
849 860 5.308825 AGTAGGAACAAGAACCTGAACATG 58.691 41.667 0.00 0.00 37.68 3.21
850 861 4.437682 AGGAACAAGAACCTGAACATGA 57.562 40.909 0.00 0.00 34.99 3.07
851 862 4.792068 AGGAACAAGAACCTGAACATGAA 58.208 39.130 0.00 0.00 34.99 2.57
852 863 4.580580 AGGAACAAGAACCTGAACATGAAC 59.419 41.667 0.00 0.00 34.99 3.18
853 864 4.580580 GGAACAAGAACCTGAACATGAACT 59.419 41.667 0.00 0.00 0.00 3.01
854 865 5.505173 AACAAGAACCTGAACATGAACTG 57.495 39.130 0.00 0.00 0.00 3.16
855 866 4.780815 ACAAGAACCTGAACATGAACTGA 58.219 39.130 0.00 0.00 0.00 3.41
860 871 4.437682 ACCTGAACATGAACTGAAAGGA 57.562 40.909 0.00 0.00 39.30 3.36
878 889 4.431416 AGGAAACATGGCGGACATATAA 57.569 40.909 0.00 0.00 37.84 0.98
896 907 6.369890 ACATATAATTGCTACAGATCAAGGCG 59.630 38.462 0.00 0.00 0.00 5.52
932 947 2.125512 GCCGACCGATGTTCTGCT 60.126 61.111 0.00 0.00 0.00 4.24
963 988 4.356289 GTGCTAGCTTGCTAGAAGTCTAC 58.644 47.826 27.72 12.21 0.00 2.59
964 989 3.065510 TGCTAGCTTGCTAGAAGTCTACG 59.934 47.826 27.72 4.96 0.00 3.51
965 990 3.312973 GCTAGCTTGCTAGAAGTCTACGA 59.687 47.826 27.72 0.00 0.00 3.43
966 991 3.768468 AGCTTGCTAGAAGTCTACGAC 57.232 47.619 0.00 0.00 0.00 4.34
1010 1035 3.713248 AGGTGCATCATCATGGAGACTTA 59.287 43.478 0.00 0.00 29.57 2.24
1146 1174 2.267681 ATCCTTCACCTCGTCGACGC 62.268 60.000 32.19 0.00 39.60 5.19
1289 1322 5.305585 TCAAGAACCGGAGATATTATTGGC 58.694 41.667 9.46 0.00 0.00 4.52
1294 1333 3.397955 ACCGGAGATATTATTGGCCCTTT 59.602 43.478 9.46 0.00 0.00 3.11
1408 1483 2.576832 CGTGTCGGGGGTAACAGGT 61.577 63.158 0.00 0.00 39.74 4.00
1409 1484 1.250154 CGTGTCGGGGGTAACAGGTA 61.250 60.000 0.00 0.00 39.74 3.08
1427 1502 2.022195 GTATACGTGTCAGGAGAGGCA 58.978 52.381 0.00 0.00 0.00 4.75
1492 1586 2.583520 GCTCCAGCTCCACCTCAG 59.416 66.667 0.00 0.00 38.21 3.35
1602 1697 2.035237 TTTGTCTTCTCCGTGGCCGT 62.035 55.000 0.00 0.00 0.00 5.68
1603 1698 2.035237 TTGTCTTCTCCGTGGCCGTT 62.035 55.000 0.00 0.00 0.00 4.44
1605 1700 3.423154 CTTCTCCGTGGCCGTTGC 61.423 66.667 0.00 0.00 0.00 4.17
1627 1724 3.947841 GTGTTGCGCGACCTTGCA 61.948 61.111 24.73 2.80 39.81 4.08
1695 1804 2.203728 ACGAGGTGGGTGGCTACA 60.204 61.111 1.52 0.00 0.00 2.74
1765 1884 6.077777 AACAAATGAGTGTTGCGGTAGACG 62.078 45.833 0.00 0.00 40.22 4.18
1766 1885 0.108804 ATGAGTGTTGCGGTAGACGG 60.109 55.000 0.00 0.00 44.51 4.79
1767 1886 1.174078 TGAGTGTTGCGGTAGACGGA 61.174 55.000 0.00 0.00 44.51 4.69
1811 1930 9.158233 CATGGTAAAATCTTCATTGCAAAGAAT 57.842 29.630 16.71 5.30 36.41 2.40
1825 1944 3.747193 CAAAGAATGCGTGGTCACATAC 58.253 45.455 1.90 0.00 0.00 2.39
1826 1945 3.334583 AAGAATGCGTGGTCACATACT 57.665 42.857 1.90 0.00 0.00 2.12
1827 1946 2.621338 AGAATGCGTGGTCACATACTG 58.379 47.619 1.90 0.00 0.00 2.74
1836 1969 2.105649 TGGTCACATACTGCAACCAGAA 59.894 45.455 0.00 0.00 41.77 3.02
1837 1970 2.484264 GGTCACATACTGCAACCAGAAC 59.516 50.000 0.00 0.00 41.77 3.01
1839 1972 1.812571 CACATACTGCAACCAGAACCC 59.187 52.381 0.00 0.00 41.77 4.11
1844 1977 1.247567 CTGCAACCAGAACCCGAAAT 58.752 50.000 0.00 0.00 41.77 2.17
1845 1978 1.613437 CTGCAACCAGAACCCGAAATT 59.387 47.619 0.00 0.00 41.77 1.82
1940 2074 2.803030 AGAGCGGAGGACTGTAGTAA 57.197 50.000 0.00 0.00 0.00 2.24
1999 2133 3.120304 GCAGGTCGGACATCTTTTTGTAC 60.120 47.826 10.76 0.00 0.00 2.90
2005 2139 6.416750 GGTCGGACATCTTTTTGTACTTTTTG 59.583 38.462 10.76 0.00 0.00 2.44
2037 2185 7.253905 AGTAAAAATAGCCCACAGACTTCTA 57.746 36.000 0.00 0.00 0.00 2.10
2041 2189 8.422577 AAAAATAGCCCACAGACTTCTATTTT 57.577 30.769 10.65 10.65 44.81 1.82
2074 2222 8.500837 TTCGTTTTGAACATTTGCATAGTAAG 57.499 30.769 0.00 0.00 0.00 2.34
2075 2223 7.644490 TCGTTTTGAACATTTGCATAGTAAGT 58.356 30.769 0.00 0.00 0.00 2.24
2076 2224 8.775527 TCGTTTTGAACATTTGCATAGTAAGTA 58.224 29.630 0.00 0.00 0.00 2.24
2103 2252 8.911918 AATAACCCATAGATTACGTTTGCATA 57.088 30.769 0.00 0.00 0.00 3.14
2139 2288 5.726980 ATTTGAATAGACTTGCAAGCCAA 57.273 34.783 26.27 16.05 0.00 4.52
2146 2295 3.879912 CTTGCAAGCCAAGTTGAGG 57.120 52.632 14.65 0.00 44.74 3.86
2155 2304 2.781945 CCAAGTTGAGGCAAACTGTC 57.218 50.000 3.87 0.00 40.28 3.51
2156 2305 2.301346 CCAAGTTGAGGCAAACTGTCT 58.699 47.619 3.87 0.00 40.28 3.41
2167 2316 4.828939 AGGCAAACTGTCTCATTCATTTCA 59.171 37.500 0.00 0.00 0.00 2.69
2168 2317 5.479375 AGGCAAACTGTCTCATTCATTTCAT 59.521 36.000 0.00 0.00 0.00 2.57
2169 2318 6.014840 AGGCAAACTGTCTCATTCATTTCATT 60.015 34.615 0.00 0.00 0.00 2.57
2171 2320 7.814107 GGCAAACTGTCTCATTCATTTCATTAA 59.186 33.333 0.00 0.00 0.00 1.40
2172 2321 8.642020 GCAAACTGTCTCATTCATTTCATTAAC 58.358 33.333 0.00 0.00 0.00 2.01
2173 2322 9.681692 CAAACTGTCTCATTCATTTCATTAACA 57.318 29.630 0.00 0.00 0.00 2.41
2174 2323 9.683069 AAACTGTCTCATTCATTTCATTAACAC 57.317 29.630 0.00 0.00 0.00 3.32
2175 2324 7.521529 ACTGTCTCATTCATTTCATTAACACG 58.478 34.615 0.00 0.00 0.00 4.49
2178 2327 8.349245 TGTCTCATTCATTTCATTAACACGTTT 58.651 29.630 0.00 0.00 0.00 3.60
2179 2328 8.629986 GTCTCATTCATTTCATTAACACGTTTG 58.370 33.333 0.00 0.00 0.00 2.93
2180 2329 8.563732 TCTCATTCATTTCATTAACACGTTTGA 58.436 29.630 0.00 0.00 0.00 2.69
2181 2330 9.179552 CTCATTCATTTCATTAACACGTTTGAA 57.820 29.630 0.00 0.00 0.00 2.69
2183 2332 9.941991 CATTCATTTCATTAACACGTTTGAATC 57.058 29.630 0.00 0.00 31.02 2.52
2185 2334 7.881142 TCATTTCATTAACACGTTTGAATCCT 58.119 30.769 0.00 0.00 0.00 3.24
2186 2335 8.020819 TCATTTCATTAACACGTTTGAATCCTC 58.979 33.333 0.00 0.00 0.00 3.71
2187 2336 5.873179 TCATTAACACGTTTGAATCCTCC 57.127 39.130 0.00 0.00 0.00 4.30
2188 2337 4.698304 TCATTAACACGTTTGAATCCTCCC 59.302 41.667 0.00 0.00 0.00 4.30
2189 2338 2.951229 AACACGTTTGAATCCTCCCT 57.049 45.000 0.00 0.00 0.00 4.20
2191 2340 1.697432 ACACGTTTGAATCCTCCCTCA 59.303 47.619 0.00 0.00 0.00 3.86
2192 2341 2.289694 ACACGTTTGAATCCTCCCTCAG 60.290 50.000 0.00 0.00 0.00 3.35
2193 2342 1.978580 ACGTTTGAATCCTCCCTCAGT 59.021 47.619 0.00 0.00 0.00 3.41
2195 2344 3.581332 ACGTTTGAATCCTCCCTCAGTAA 59.419 43.478 0.00 0.00 0.00 2.24
2196 2345 4.041198 ACGTTTGAATCCTCCCTCAGTAAA 59.959 41.667 0.00 0.00 0.00 2.01
2197 2346 4.631813 CGTTTGAATCCTCCCTCAGTAAAG 59.368 45.833 0.00 0.00 0.00 1.85
2198 2347 5.568825 CGTTTGAATCCTCCCTCAGTAAAGA 60.569 44.000 0.00 0.00 0.00 2.52
2199 2348 6.238648 GTTTGAATCCTCCCTCAGTAAAGAA 58.761 40.000 0.00 0.00 0.00 2.52
2201 2350 6.642733 TGAATCCTCCCTCAGTAAAGAAAT 57.357 37.500 0.00 0.00 0.00 2.17
2202 2351 7.749377 TGAATCCTCCCTCAGTAAAGAAATA 57.251 36.000 0.00 0.00 0.00 1.40
2203 2352 8.158025 TGAATCCTCCCTCAGTAAAGAAATAA 57.842 34.615 0.00 0.00 0.00 1.40
2205 2354 9.462606 GAATCCTCCCTCAGTAAAGAAATAAAA 57.537 33.333 0.00 0.00 0.00 1.52
2206 2355 9.822727 AATCCTCCCTCAGTAAAGAAATAAAAA 57.177 29.630 0.00 0.00 0.00 1.94
2228 2460 1.135083 AGAGCGTCCACCATTCGTAAG 60.135 52.381 0.00 0.00 0.00 2.34
2236 2468 0.107654 ACCATTCGTAAGGGCAGAGC 60.108 55.000 0.00 0.00 35.24 4.09
2240 2472 2.094762 TTCGTAAGGGCAGAGCTTTC 57.905 50.000 0.00 0.00 38.47 2.62
2241 2473 0.973632 TCGTAAGGGCAGAGCTTTCA 59.026 50.000 0.00 0.00 38.47 2.69
2248 2481 1.712977 GGCAGAGCTTTCAGATGCGG 61.713 60.000 0.00 0.00 37.76 5.69
2283 2517 1.943340 GGAGAAGAAACCATGATCGCC 59.057 52.381 0.00 0.00 0.00 5.54
2290 2524 1.871080 AACCATGATCGCCGAGAATC 58.129 50.000 0.00 0.00 0.00 2.52
2300 2534 2.832672 GCCGAGAATCTGCGAAATTT 57.167 45.000 0.00 0.00 35.14 1.82
2310 2544 4.909696 TCTGCGAAATTTGGTCAAGAAA 57.090 36.364 0.00 0.00 0.00 2.52
2311 2545 4.606961 TCTGCGAAATTTGGTCAAGAAAC 58.393 39.130 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.355716 GGCTAGCACAAACTGGGATACA 60.356 50.000 18.24 0.00 39.74 2.29
11 12 2.289565 GGCTAGCACAAACTGGGATAC 58.710 52.381 18.24 0.00 0.00 2.24
12 13 1.912731 TGGCTAGCACAAACTGGGATA 59.087 47.619 18.24 0.00 0.00 2.59
13 14 0.698238 TGGCTAGCACAAACTGGGAT 59.302 50.000 18.24 0.00 0.00 3.85
14 15 0.698238 ATGGCTAGCACAAACTGGGA 59.302 50.000 18.24 0.00 0.00 4.37
15 16 1.098050 GATGGCTAGCACAAACTGGG 58.902 55.000 18.24 0.00 0.00 4.45
16 17 2.119801 AGATGGCTAGCACAAACTGG 57.880 50.000 18.24 0.00 0.00 4.00
17 18 4.036027 CCATAAGATGGCTAGCACAAACTG 59.964 45.833 18.24 5.30 44.70 3.16
18 19 4.202441 CCATAAGATGGCTAGCACAAACT 58.798 43.478 18.24 12.26 44.70 2.66
19 20 4.558538 CCATAAGATGGCTAGCACAAAC 57.441 45.455 18.24 10.42 44.70 2.93
31 32 6.515272 AGTTAAACAAGGTGCCATAAGATG 57.485 37.500 0.00 0.00 0.00 2.90
32 33 8.686334 CATAAGTTAAACAAGGTGCCATAAGAT 58.314 33.333 0.00 0.00 0.00 2.40
33 34 7.668052 ACATAAGTTAAACAAGGTGCCATAAGA 59.332 33.333 0.00 0.00 0.00 2.10
34 35 7.826690 ACATAAGTTAAACAAGGTGCCATAAG 58.173 34.615 0.00 0.00 0.00 1.73
35 36 7.668052 AGACATAAGTTAAACAAGGTGCCATAA 59.332 33.333 0.00 0.00 0.00 1.90
36 37 7.120579 CAGACATAAGTTAAACAAGGTGCCATA 59.879 37.037 0.00 0.00 0.00 2.74
37 38 6.010219 AGACATAAGTTAAACAAGGTGCCAT 58.990 36.000 0.00 0.00 0.00 4.40
38 39 5.240623 CAGACATAAGTTAAACAAGGTGCCA 59.759 40.000 0.00 0.00 0.00 4.92
39 40 5.240844 ACAGACATAAGTTAAACAAGGTGCC 59.759 40.000 0.00 0.00 0.00 5.01
40 41 6.313744 ACAGACATAAGTTAAACAAGGTGC 57.686 37.500 0.00 0.00 0.00 5.01
41 42 8.603242 AGTACAGACATAAGTTAAACAAGGTG 57.397 34.615 0.00 0.00 0.00 4.00
42 43 8.426489 TGAGTACAGACATAAGTTAAACAAGGT 58.574 33.333 0.00 0.00 0.00 3.50
43 44 8.827177 TGAGTACAGACATAAGTTAAACAAGG 57.173 34.615 0.00 0.00 0.00 3.61
44 45 9.692749 TCTGAGTACAGACATAAGTTAAACAAG 57.307 33.333 0.00 0.00 46.55 3.16
60 61 5.233050 CGGAAGCAACAATATCTGAGTACAG 59.767 44.000 0.00 0.00 44.66 2.74
61 62 5.109210 CGGAAGCAACAATATCTGAGTACA 58.891 41.667 0.00 0.00 0.00 2.90
62 63 5.643339 CGGAAGCAACAATATCTGAGTAC 57.357 43.478 0.00 0.00 0.00 2.73
79 80 1.671328 TCATAGACGAGTCAGCGGAAG 59.329 52.381 5.99 0.00 35.12 3.46
80 81 1.746470 TCATAGACGAGTCAGCGGAA 58.254 50.000 5.99 0.00 35.12 4.30
81 82 1.874231 GATCATAGACGAGTCAGCGGA 59.126 52.381 5.99 0.00 35.12 5.54
82 83 1.399087 CGATCATAGACGAGTCAGCGG 60.399 57.143 5.99 0.00 35.12 5.52
83 84 1.527311 TCGATCATAGACGAGTCAGCG 59.473 52.381 5.99 0.00 34.49 5.18
84 85 3.181826 CTCGATCATAGACGAGTCAGC 57.818 52.381 5.99 0.00 46.90 4.26
90 91 2.683362 ACAAGTGCTCGATCATAGACGA 59.317 45.455 0.00 0.00 37.03 4.20
91 92 3.071786 ACAAGTGCTCGATCATAGACG 57.928 47.619 0.00 0.00 0.00 4.18
92 93 5.176407 AGTACAAGTGCTCGATCATAGAC 57.824 43.478 0.00 0.00 0.00 2.59
93 94 5.425577 GAGTACAAGTGCTCGATCATAGA 57.574 43.478 2.62 0.00 32.94 1.98
102 103 0.458716 GGGCTCGAGTACAAGTGCTC 60.459 60.000 15.13 8.07 38.67 4.26
103 104 0.900647 AGGGCTCGAGTACAAGTGCT 60.901 55.000 15.13 0.00 0.00 4.40
104 105 0.458716 GAGGGCTCGAGTACAAGTGC 60.459 60.000 15.13 0.00 0.00 4.40
105 106 3.723554 GAGGGCTCGAGTACAAGTG 57.276 57.895 15.13 0.00 0.00 3.16
128 129 4.147321 AGCATCATAATACAAGCCAAGGG 58.853 43.478 0.00 0.00 0.00 3.95
129 130 5.068198 ACAAGCATCATAATACAAGCCAAGG 59.932 40.000 0.00 0.00 0.00 3.61
130 131 6.140303 ACAAGCATCATAATACAAGCCAAG 57.860 37.500 0.00 0.00 0.00 3.61
131 132 7.501892 TCATACAAGCATCATAATACAAGCCAA 59.498 33.333 0.00 0.00 0.00 4.52
132 133 6.997476 TCATACAAGCATCATAATACAAGCCA 59.003 34.615 0.00 0.00 0.00 4.75
133 134 7.173907 AGTCATACAAGCATCATAATACAAGCC 59.826 37.037 0.00 0.00 0.00 4.35
134 135 8.092521 AGTCATACAAGCATCATAATACAAGC 57.907 34.615 0.00 0.00 0.00 4.01
166 167 9.507329 AAGATATCACAACACAACTCTACAAAT 57.493 29.630 5.32 0.00 0.00 2.32
167 168 8.902540 AAGATATCACAACACAACTCTACAAA 57.097 30.769 5.32 0.00 0.00 2.83
168 169 8.367911 AGAAGATATCACAACACAACTCTACAA 58.632 33.333 5.32 0.00 0.00 2.41
169 170 7.896811 AGAAGATATCACAACACAACTCTACA 58.103 34.615 5.32 0.00 0.00 2.74
170 171 7.219154 CGAGAAGATATCACAACACAACTCTAC 59.781 40.741 5.32 0.00 0.00 2.59
171 172 7.094334 ACGAGAAGATATCACAACACAACTCTA 60.094 37.037 5.32 0.00 0.00 2.43
172 173 6.096036 CGAGAAGATATCACAACACAACTCT 58.904 40.000 5.32 0.00 0.00 3.24
173 174 5.864474 ACGAGAAGATATCACAACACAACTC 59.136 40.000 5.32 0.00 0.00 3.01
174 175 5.635280 CACGAGAAGATATCACAACACAACT 59.365 40.000 5.32 0.00 0.00 3.16
175 176 5.633601 TCACGAGAAGATATCACAACACAAC 59.366 40.000 5.32 0.00 0.00 3.32
176 177 5.778862 TCACGAGAAGATATCACAACACAA 58.221 37.500 5.32 0.00 0.00 3.33
177 178 5.048013 ACTCACGAGAAGATATCACAACACA 60.048 40.000 5.32 0.00 0.00 3.72
178 179 5.403246 ACTCACGAGAAGATATCACAACAC 58.597 41.667 5.32 0.00 0.00 3.32
179 180 5.393135 GGACTCACGAGAAGATATCACAACA 60.393 44.000 5.32 0.00 0.00 3.33
180 181 5.038033 GGACTCACGAGAAGATATCACAAC 58.962 45.833 5.32 0.00 0.00 3.32
181 182 4.098044 GGGACTCACGAGAAGATATCACAA 59.902 45.833 5.32 0.00 0.00 3.33
182 183 3.632604 GGGACTCACGAGAAGATATCACA 59.367 47.826 5.32 0.00 0.00 3.58
183 184 3.886505 AGGGACTCACGAGAAGATATCAC 59.113 47.826 5.32 0.00 0.00 3.06
184 185 3.885901 CAGGGACTCACGAGAAGATATCA 59.114 47.826 5.32 0.00 34.60 2.15
185 186 4.138290 TCAGGGACTCACGAGAAGATATC 58.862 47.826 0.00 0.00 34.60 1.63
186 187 4.171878 TCAGGGACTCACGAGAAGATAT 57.828 45.455 0.00 0.00 34.60 1.63
187 188 3.646736 TCAGGGACTCACGAGAAGATA 57.353 47.619 0.00 0.00 34.60 1.98
188 189 2.516227 TCAGGGACTCACGAGAAGAT 57.484 50.000 0.00 0.00 34.60 2.40
189 190 2.025793 AGATCAGGGACTCACGAGAAGA 60.026 50.000 0.00 0.00 34.60 2.87
190 191 2.374184 AGATCAGGGACTCACGAGAAG 58.626 52.381 0.00 0.00 34.60 2.85
191 192 2.493675 CAAGATCAGGGACTCACGAGAA 59.506 50.000 0.00 0.00 34.60 2.87
192 193 2.095461 CAAGATCAGGGACTCACGAGA 58.905 52.381 0.00 0.00 34.60 4.04
193 194 2.095461 TCAAGATCAGGGACTCACGAG 58.905 52.381 0.00 0.00 34.60 4.18
194 195 2.215942 TCAAGATCAGGGACTCACGA 57.784 50.000 0.00 0.00 34.60 4.35
195 196 2.542618 CGATCAAGATCAGGGACTCACG 60.543 54.545 10.39 0.00 34.60 4.35
196 197 2.428890 ACGATCAAGATCAGGGACTCAC 59.571 50.000 10.39 0.00 34.60 3.51
197 198 2.739943 ACGATCAAGATCAGGGACTCA 58.260 47.619 10.39 0.00 34.60 3.41
198 199 3.632604 TGTACGATCAAGATCAGGGACTC 59.367 47.826 10.39 0.00 34.60 3.36
199 200 3.381908 GTGTACGATCAAGATCAGGGACT 59.618 47.826 10.39 0.00 43.88 3.85
200 201 3.707793 GTGTACGATCAAGATCAGGGAC 58.292 50.000 10.39 2.84 37.69 4.46
201 202 2.357952 CGTGTACGATCAAGATCAGGGA 59.642 50.000 10.39 0.00 43.02 4.20
202 203 2.099263 ACGTGTACGATCAAGATCAGGG 59.901 50.000 11.79 0.00 43.02 4.45
203 204 3.422417 ACGTGTACGATCAAGATCAGG 57.578 47.619 11.79 0.51 43.02 3.86
204 205 4.490959 GCAAACGTGTACGATCAAGATCAG 60.491 45.833 11.79 5.82 43.02 2.90
205 206 3.366724 GCAAACGTGTACGATCAAGATCA 59.633 43.478 11.79 0.00 43.02 2.92
206 207 3.539592 CGCAAACGTGTACGATCAAGATC 60.540 47.826 11.79 0.00 43.02 2.75
207 208 2.344441 CGCAAACGTGTACGATCAAGAT 59.656 45.455 11.79 0.00 43.02 2.40
208 209 1.717113 CGCAAACGTGTACGATCAAGA 59.283 47.619 11.79 0.00 43.02 3.02
209 210 2.125168 CGCAAACGTGTACGATCAAG 57.875 50.000 11.79 0.00 43.02 3.02
222 223 5.286797 TCGTACACTAATCATACACGCAAAC 59.713 40.000 0.00 0.00 0.00 2.93
223 224 5.400703 TCGTACACTAATCATACACGCAAA 58.599 37.500 0.00 0.00 0.00 3.68
224 225 4.984205 TCGTACACTAATCATACACGCAA 58.016 39.130 0.00 0.00 0.00 4.85
225 226 4.619437 TCGTACACTAATCATACACGCA 57.381 40.909 0.00 0.00 0.00 5.24
226 227 5.684184 TCAATCGTACACTAATCATACACGC 59.316 40.000 0.00 0.00 0.00 5.34
227 228 7.673810 TTCAATCGTACACTAATCATACACG 57.326 36.000 0.00 0.00 0.00 4.49
245 246 0.942252 GTAACGCCCCCGATTCAATC 59.058 55.000 0.00 0.00 38.29 2.67
246 247 0.253610 TGTAACGCCCCCGATTCAAT 59.746 50.000 0.00 0.00 38.29 2.57
247 248 0.391927 CTGTAACGCCCCCGATTCAA 60.392 55.000 0.00 0.00 38.29 2.69
248 249 1.219664 CTGTAACGCCCCCGATTCA 59.780 57.895 0.00 0.00 38.29 2.57
249 250 1.523032 CCTGTAACGCCCCCGATTC 60.523 63.158 0.00 0.00 38.29 2.52
250 251 1.844544 AACCTGTAACGCCCCCGATT 61.845 55.000 0.00 0.00 38.29 3.34
251 252 1.844544 AAACCTGTAACGCCCCCGAT 61.845 55.000 0.00 0.00 38.29 4.18
252 253 2.518709 AAACCTGTAACGCCCCCGA 61.519 57.895 0.00 0.00 38.29 5.14
253 254 2.032987 AAACCTGTAACGCCCCCG 59.967 61.111 0.00 0.00 41.14 5.73
254 255 2.632544 GCAAACCTGTAACGCCCCC 61.633 63.158 0.00 0.00 0.00 5.40
255 256 1.583495 GAGCAAACCTGTAACGCCCC 61.583 60.000 0.00 0.00 0.00 5.80
256 257 1.873863 GAGCAAACCTGTAACGCCC 59.126 57.895 0.00 0.00 0.00 6.13
257 258 1.495951 CGAGCAAACCTGTAACGCC 59.504 57.895 0.00 0.00 0.00 5.68
258 259 1.495951 CCGAGCAAACCTGTAACGC 59.504 57.895 0.00 0.00 0.00 4.84
259 260 1.908066 GCCCGAGCAAACCTGTAACG 61.908 60.000 0.00 0.00 39.53 3.18
260 261 1.583495 GGCCCGAGCAAACCTGTAAC 61.583 60.000 0.00 0.00 42.56 2.50
261 262 1.302993 GGCCCGAGCAAACCTGTAA 60.303 57.895 0.00 0.00 42.56 2.41
262 263 2.349755 GGCCCGAGCAAACCTGTA 59.650 61.111 0.00 0.00 42.56 2.74
263 264 4.660938 GGGCCCGAGCAAACCTGT 62.661 66.667 5.69 0.00 42.56 4.00
266 267 2.640581 ATATGGGGCCCGAGCAAACC 62.641 60.000 19.83 0.00 42.56 3.27
267 268 1.152756 ATATGGGGCCCGAGCAAAC 60.153 57.895 19.83 0.00 42.56 2.93
268 269 1.150536 GATATGGGGCCCGAGCAAA 59.849 57.895 19.83 0.00 42.56 3.68
269 270 2.829384 GGATATGGGGCCCGAGCAA 61.829 63.158 19.83 0.00 42.56 3.91
270 271 3.249189 GGATATGGGGCCCGAGCA 61.249 66.667 19.83 9.00 42.56 4.26
271 272 4.394712 CGGATATGGGGCCCGAGC 62.395 72.222 19.83 11.34 45.58 5.03
272 273 2.923035 ACGGATATGGGGCCCGAG 60.923 66.667 19.83 1.36 45.58 4.63
273 274 2.920912 GACGGATATGGGGCCCGA 60.921 66.667 19.83 13.96 45.58 5.14
275 276 1.201429 ATGAGACGGATATGGGGCCC 61.201 60.000 18.17 18.17 0.00 5.80
276 277 1.568504 TATGAGACGGATATGGGGCC 58.431 55.000 0.00 0.00 0.00 5.80
277 278 3.914426 AATATGAGACGGATATGGGGC 57.086 47.619 0.00 0.00 0.00 5.80
278 279 4.517285 CCAAATATGAGACGGATATGGGG 58.483 47.826 0.00 0.00 0.00 4.96
279 280 4.019321 ACCCAAATATGAGACGGATATGGG 60.019 45.833 5.50 5.50 37.68 4.00
280 281 5.165961 ACCCAAATATGAGACGGATATGG 57.834 43.478 0.00 0.00 0.00 2.74
281 282 6.230472 TCAACCCAAATATGAGACGGATATG 58.770 40.000 0.00 0.00 0.00 1.78
282 283 6.433847 TCAACCCAAATATGAGACGGATAT 57.566 37.500 0.00 0.00 0.00 1.63
283 284 5.880164 TCAACCCAAATATGAGACGGATA 57.120 39.130 0.00 0.00 0.00 2.59
284 285 4.771114 TCAACCCAAATATGAGACGGAT 57.229 40.909 0.00 0.00 0.00 4.18
285 286 4.561500 TTCAACCCAAATATGAGACGGA 57.438 40.909 0.00 0.00 0.00 4.69
286 287 6.072508 CCATATTCAACCCAAATATGAGACGG 60.073 42.308 14.40 0.00 44.43 4.79
287 288 6.072508 CCCATATTCAACCCAAATATGAGACG 60.073 42.308 14.40 0.00 44.43 4.18
288 289 7.004086 TCCCATATTCAACCCAAATATGAGAC 58.996 38.462 14.40 0.00 44.43 3.36
289 290 7.160457 TCCCATATTCAACCCAAATATGAGA 57.840 36.000 14.40 6.67 44.43 3.27
290 291 7.578189 GCATCCCATATTCAACCCAAATATGAG 60.578 40.741 14.40 4.79 44.43 2.90
291 292 6.211184 GCATCCCATATTCAACCCAAATATGA 59.789 38.462 14.40 0.58 44.43 2.15
292 293 6.400568 GCATCCCATATTCAACCCAAATATG 58.599 40.000 8.28 8.28 42.67 1.78
293 294 5.484998 GGCATCCCATATTCAACCCAAATAT 59.515 40.000 0.00 0.00 31.08 1.28
294 295 4.837860 GGCATCCCATATTCAACCCAAATA 59.162 41.667 0.00 0.00 0.00 1.40
295 296 3.647590 GGCATCCCATATTCAACCCAAAT 59.352 43.478 0.00 0.00 0.00 2.32
296 297 3.037549 GGCATCCCATATTCAACCCAAA 58.962 45.455 0.00 0.00 0.00 3.28
297 298 2.676748 GGCATCCCATATTCAACCCAA 58.323 47.619 0.00 0.00 0.00 4.12
298 299 1.478471 CGGCATCCCATATTCAACCCA 60.478 52.381 0.00 0.00 0.00 4.51
299 300 1.247567 CGGCATCCCATATTCAACCC 58.752 55.000 0.00 0.00 0.00 4.11
300 301 1.247567 CCGGCATCCCATATTCAACC 58.752 55.000 0.00 0.00 0.00 3.77
301 302 1.880027 GACCGGCATCCCATATTCAAC 59.120 52.381 0.00 0.00 0.00 3.18
302 303 1.492599 TGACCGGCATCCCATATTCAA 59.507 47.619 0.00 0.00 0.00 2.69
303 304 1.072173 CTGACCGGCATCCCATATTCA 59.928 52.381 0.00 0.00 0.00 2.57
304 305 1.813513 CTGACCGGCATCCCATATTC 58.186 55.000 0.00 0.00 0.00 1.75
305 306 0.250901 GCTGACCGGCATCCCATATT 60.251 55.000 0.00 0.00 0.00 1.28
306 307 1.376466 GCTGACCGGCATCCCATAT 59.624 57.895 0.00 0.00 0.00 1.78
307 308 2.818169 GGCTGACCGGCATCCCATA 61.818 63.158 0.00 0.00 38.25 2.74
308 309 4.195334 GGCTGACCGGCATCCCAT 62.195 66.667 0.00 0.00 38.25 4.00
310 311 4.864334 CAGGCTGACCGGCATCCC 62.864 72.222 9.42 4.60 42.76 3.85
311 312 4.864334 CCAGGCTGACCGGCATCC 62.864 72.222 17.94 5.97 42.76 3.51
312 313 4.864334 CCCAGGCTGACCGGCATC 62.864 72.222 17.94 0.00 42.76 3.91
318 319 1.302993 TAAAACGCCCAGGCTGACC 60.303 57.895 17.94 5.14 39.32 4.02
319 320 1.305930 CCTAAAACGCCCAGGCTGAC 61.306 60.000 17.94 6.76 39.32 3.51
320 321 1.002624 CCTAAAACGCCCAGGCTGA 60.003 57.895 17.94 0.00 39.32 4.26
321 322 3.590824 CCTAAAACGCCCAGGCTG 58.409 61.111 7.75 7.75 39.32 4.85
328 329 1.081041 CAAACGGGCCTAAAACGCC 60.081 57.895 0.84 0.00 46.29 5.68
329 330 0.109919 CTCAAACGGGCCTAAAACGC 60.110 55.000 0.84 0.00 0.00 4.84
330 331 1.196127 GTCTCAAACGGGCCTAAAACG 59.804 52.381 0.84 0.00 0.00 3.60
331 332 2.983402 GTCTCAAACGGGCCTAAAAC 57.017 50.000 0.84 0.00 0.00 2.43
342 343 3.807622 TGATCCAAACAGACGTCTCAAAC 59.192 43.478 16.96 2.97 0.00 2.93
343 344 4.066646 TGATCCAAACAGACGTCTCAAA 57.933 40.909 16.96 0.00 0.00 2.69
344 345 3.744238 TGATCCAAACAGACGTCTCAA 57.256 42.857 16.96 0.00 0.00 3.02
345 346 3.320826 TCTTGATCCAAACAGACGTCTCA 59.679 43.478 16.96 5.37 0.00 3.27
346 347 3.914312 TCTTGATCCAAACAGACGTCTC 58.086 45.455 16.96 2.39 0.00 3.36
347 348 4.336889 TTCTTGATCCAAACAGACGTCT 57.663 40.909 13.58 13.58 0.00 4.18
348 349 5.205565 GTTTTCTTGATCCAAACAGACGTC 58.794 41.667 7.70 7.70 31.81 4.34
349 350 4.260620 CGTTTTCTTGATCCAAACAGACGT 60.261 41.667 0.00 0.00 31.81 4.34
350 351 4.211389 CGTTTTCTTGATCCAAACAGACG 58.789 43.478 0.00 0.00 31.81 4.18
351 352 4.970003 CACGTTTTCTTGATCCAAACAGAC 59.030 41.667 0.00 0.00 31.81 3.51
352 353 4.878971 TCACGTTTTCTTGATCCAAACAGA 59.121 37.500 0.00 0.00 31.81 3.41
353 354 4.970003 GTCACGTTTTCTTGATCCAAACAG 59.030 41.667 0.00 0.00 31.03 3.16
354 355 4.201970 GGTCACGTTTTCTTGATCCAAACA 60.202 41.667 0.00 0.00 31.03 2.83
355 356 4.287720 GGTCACGTTTTCTTGATCCAAAC 58.712 43.478 0.00 0.00 31.03 2.93
356 357 3.002862 CGGTCACGTTTTCTTGATCCAAA 59.997 43.478 0.00 0.00 31.03 3.28
357 358 2.546368 CGGTCACGTTTTCTTGATCCAA 59.454 45.455 0.00 0.00 31.03 3.53
358 359 2.139917 CGGTCACGTTTTCTTGATCCA 58.860 47.619 0.00 0.00 31.03 3.41
359 360 1.463444 CCGGTCACGTTTTCTTGATCC 59.537 52.381 0.00 0.00 38.78 3.36
360 361 2.157085 GTCCGGTCACGTTTTCTTGATC 59.843 50.000 0.00 0.00 38.78 2.92
361 362 2.140717 GTCCGGTCACGTTTTCTTGAT 58.859 47.619 0.00 0.00 38.78 2.57
362 363 1.134759 TGTCCGGTCACGTTTTCTTGA 60.135 47.619 0.00 0.00 38.78 3.02
363 364 1.292061 TGTCCGGTCACGTTTTCTTG 58.708 50.000 0.00 0.00 38.78 3.02
364 365 2.027003 TTGTCCGGTCACGTTTTCTT 57.973 45.000 0.00 0.00 38.78 2.52
365 366 2.140717 GATTGTCCGGTCACGTTTTCT 58.859 47.619 0.00 0.00 38.78 2.52
366 367 1.196127 GGATTGTCCGGTCACGTTTTC 59.804 52.381 0.00 0.00 38.78 2.29
367 368 1.232119 GGATTGTCCGGTCACGTTTT 58.768 50.000 0.00 0.00 38.78 2.43
368 369 2.922779 GGATTGTCCGGTCACGTTT 58.077 52.632 0.00 0.00 38.78 3.60
369 370 4.687464 GGATTGTCCGGTCACGTT 57.313 55.556 0.00 0.00 38.78 3.99
391 392 0.437295 CGATTCAAACGGACGTGTCC 59.563 55.000 9.04 9.04 46.18 4.02
392 393 1.385743 CTCGATTCAAACGGACGTGTC 59.614 52.381 0.00 0.00 0.00 3.67
393 394 1.001048 TCTCGATTCAAACGGACGTGT 60.001 47.619 0.00 0.00 0.00 4.49
394 395 1.693467 TCTCGATTCAAACGGACGTG 58.307 50.000 0.00 0.00 0.00 4.49
395 396 2.427232 TTCTCGATTCAAACGGACGT 57.573 45.000 0.00 0.00 0.00 4.34
396 397 3.466836 GTTTTCTCGATTCAAACGGACG 58.533 45.455 0.00 0.00 0.00 4.79
397 398 3.466836 CGTTTTCTCGATTCAAACGGAC 58.533 45.455 20.54 3.32 45.72 4.79
398 399 3.781341 CGTTTTCTCGATTCAAACGGA 57.219 42.857 20.54 0.00 45.72 4.69
401 402 4.209112 GGTCACGTTTTCTCGATTCAAAC 58.791 43.478 0.00 0.00 34.70 2.93
402 403 3.060138 CGGTCACGTTTTCTCGATTCAAA 60.060 43.478 0.00 0.00 34.81 2.69
403 404 2.473609 CGGTCACGTTTTCTCGATTCAA 59.526 45.455 0.00 0.00 34.81 2.69
404 405 2.055838 CGGTCACGTTTTCTCGATTCA 58.944 47.619 0.00 0.00 34.81 2.57
405 406 1.389106 CCGGTCACGTTTTCTCGATTC 59.611 52.381 0.00 0.00 38.78 2.52
406 407 1.000060 TCCGGTCACGTTTTCTCGATT 60.000 47.619 0.00 0.00 38.78 3.34
407 408 0.599558 TCCGGTCACGTTTTCTCGAT 59.400 50.000 0.00 0.00 38.78 3.59
408 409 0.318107 GTCCGGTCACGTTTTCTCGA 60.318 55.000 0.00 0.00 38.78 4.04
409 410 0.595567 TGTCCGGTCACGTTTTCTCG 60.596 55.000 0.00 0.00 38.78 4.04
410 411 1.574134 TTGTCCGGTCACGTTTTCTC 58.426 50.000 0.00 0.00 38.78 2.87
411 412 2.140717 GATTGTCCGGTCACGTTTTCT 58.859 47.619 0.00 0.00 38.78 2.52
412 413 1.196127 GGATTGTCCGGTCACGTTTTC 59.804 52.381 0.00 0.00 38.78 2.29
413 414 1.232119 GGATTGTCCGGTCACGTTTT 58.768 50.000 0.00 0.00 38.78 2.43
414 415 2.922779 GGATTGTCCGGTCACGTTT 58.077 52.632 0.00 0.00 38.78 3.60
415 416 4.687464 GGATTGTCCGGTCACGTT 57.313 55.556 0.00 0.00 38.78 3.99
433 434 1.278238 CCAGCTTCATACGTCCGAAC 58.722 55.000 0.00 0.00 0.00 3.95
434 435 0.892755 ACCAGCTTCATACGTCCGAA 59.107 50.000 0.00 0.00 0.00 4.30
435 436 0.892755 AACCAGCTTCATACGTCCGA 59.107 50.000 0.00 0.00 0.00 4.55
436 437 1.393539 CAAACCAGCTTCATACGTCCG 59.606 52.381 0.00 0.00 0.00 4.79
437 438 2.673368 CTCAAACCAGCTTCATACGTCC 59.327 50.000 0.00 0.00 0.00 4.79
438 439 3.585862 TCTCAAACCAGCTTCATACGTC 58.414 45.455 0.00 0.00 0.00 4.34
439 440 3.589988 CTCTCAAACCAGCTTCATACGT 58.410 45.455 0.00 0.00 0.00 3.57
440 441 2.932614 CCTCTCAAACCAGCTTCATACG 59.067 50.000 0.00 0.00 0.00 3.06
441 442 3.935828 GACCTCTCAAACCAGCTTCATAC 59.064 47.826 0.00 0.00 0.00 2.39
442 443 3.840666 AGACCTCTCAAACCAGCTTCATA 59.159 43.478 0.00 0.00 0.00 2.15
443 444 2.641815 AGACCTCTCAAACCAGCTTCAT 59.358 45.455 0.00 0.00 0.00 2.57
444 445 2.050144 AGACCTCTCAAACCAGCTTCA 58.950 47.619 0.00 0.00 0.00 3.02
445 446 2.421619 CAGACCTCTCAAACCAGCTTC 58.578 52.381 0.00 0.00 0.00 3.86
446 447 1.072965 CCAGACCTCTCAAACCAGCTT 59.927 52.381 0.00 0.00 0.00 3.74
447 448 0.689623 CCAGACCTCTCAAACCAGCT 59.310 55.000 0.00 0.00 0.00 4.24
448 449 0.398318 ACCAGACCTCTCAAACCAGC 59.602 55.000 0.00 0.00 0.00 4.85
449 450 2.158755 ACAACCAGACCTCTCAAACCAG 60.159 50.000 0.00 0.00 0.00 4.00
450 451 1.843851 ACAACCAGACCTCTCAAACCA 59.156 47.619 0.00 0.00 0.00 3.67
451 452 2.640316 ACAACCAGACCTCTCAAACC 57.360 50.000 0.00 0.00 0.00 3.27
452 453 4.602340 TCTACAACCAGACCTCTCAAAC 57.398 45.455 0.00 0.00 0.00 2.93
453 454 4.563580 GCATCTACAACCAGACCTCTCAAA 60.564 45.833 0.00 0.00 0.00 2.69
454 455 3.055819 GCATCTACAACCAGACCTCTCAA 60.056 47.826 0.00 0.00 0.00 3.02
455 456 2.497675 GCATCTACAACCAGACCTCTCA 59.502 50.000 0.00 0.00 0.00 3.27
456 457 2.763448 AGCATCTACAACCAGACCTCTC 59.237 50.000 0.00 0.00 0.00 3.20
457 458 2.763448 GAGCATCTACAACCAGACCTCT 59.237 50.000 0.00 0.00 0.00 3.69
458 459 3.172229 GAGCATCTACAACCAGACCTC 57.828 52.381 0.00 0.00 0.00 3.85
472 473 2.099921 TGAACTCCGAGCTTAGAGCATC 59.900 50.000 12.51 11.53 45.56 3.91
473 474 2.100584 CTGAACTCCGAGCTTAGAGCAT 59.899 50.000 12.51 3.88 45.56 3.79
474 475 1.474478 CTGAACTCCGAGCTTAGAGCA 59.526 52.381 12.51 4.61 45.56 4.26
475 476 1.202359 CCTGAACTCCGAGCTTAGAGC 60.202 57.143 12.51 0.00 42.84 4.09
476 477 1.202359 GCCTGAACTCCGAGCTTAGAG 60.202 57.143 11.33 11.33 36.16 2.43
477 478 0.818296 GCCTGAACTCCGAGCTTAGA 59.182 55.000 0.00 0.00 0.00 2.10
478 479 0.820871 AGCCTGAACTCCGAGCTTAG 59.179 55.000 0.00 0.00 0.00 2.18
502 503 7.880195 AGTTTCTATGTAATTCAGAGTGTGCTT 59.120 33.333 0.00 0.00 36.81 3.91
530 534 2.258591 GAGACGACGCCAGCTCAA 59.741 61.111 0.00 0.00 0.00 3.02
559 563 3.869747 TGTACGTACGTGCACACAT 57.130 47.368 31.14 5.55 35.90 3.21
564 568 1.606189 TGTAAGGTGTACGTACGTGCA 59.394 47.619 31.14 31.14 36.92 4.57
565 569 2.330231 TGTAAGGTGTACGTACGTGC 57.670 50.000 30.25 28.42 36.92 5.34
567 571 3.825308 CACATGTAAGGTGTACGTACGT 58.175 45.455 25.98 25.98 44.87 3.57
579 583 4.171005 CAGGTACACCGTACACATGTAAG 58.829 47.826 0.00 0.00 42.08 2.34
580 584 3.614630 GCAGGTACACCGTACACATGTAA 60.615 47.826 0.00 0.00 42.08 2.41
581 585 2.094597 GCAGGTACACCGTACACATGTA 60.095 50.000 0.00 0.00 42.08 2.29
582 586 1.337447 GCAGGTACACCGTACACATGT 60.337 52.381 6.62 0.00 42.08 3.21
583 587 1.067142 AGCAGGTACACCGTACACATG 60.067 52.381 6.62 0.00 42.08 3.21
584 588 1.203994 GAGCAGGTACACCGTACACAT 59.796 52.381 6.62 0.00 42.08 3.21
585 589 0.599558 GAGCAGGTACACCGTACACA 59.400 55.000 6.62 0.00 42.08 3.72
586 590 0.455633 CGAGCAGGTACACCGTACAC 60.456 60.000 6.62 0.00 42.08 2.90
587 591 1.878070 CGAGCAGGTACACCGTACA 59.122 57.895 6.62 0.00 42.08 2.90
588 592 1.515736 GCGAGCAGGTACACCGTAC 60.516 63.158 0.00 0.00 42.08 3.67
589 593 1.246056 AAGCGAGCAGGTACACCGTA 61.246 55.000 0.00 0.00 42.08 4.02
590 594 2.571216 AAGCGAGCAGGTACACCGT 61.571 57.895 0.00 0.00 42.08 4.83
591 595 2.094659 CAAGCGAGCAGGTACACCG 61.095 63.158 0.00 0.00 42.08 4.94
592 596 0.108138 ATCAAGCGAGCAGGTACACC 60.108 55.000 0.00 0.00 0.00 4.16
593 597 1.661112 GAATCAAGCGAGCAGGTACAC 59.339 52.381 0.00 0.00 0.00 2.90
594 598 1.550524 AGAATCAAGCGAGCAGGTACA 59.449 47.619 0.00 0.00 0.00 2.90
595 599 1.929836 CAGAATCAAGCGAGCAGGTAC 59.070 52.381 0.00 0.00 0.00 3.34
596 600 1.740380 GCAGAATCAAGCGAGCAGGTA 60.740 52.381 0.00 0.00 0.00 3.08
597 601 1.023513 GCAGAATCAAGCGAGCAGGT 61.024 55.000 0.00 0.00 0.00 4.00
598 602 1.720301 GCAGAATCAAGCGAGCAGG 59.280 57.895 0.00 0.00 0.00 4.85
605 609 3.968953 CGATATCTCGCAGAATCAAGC 57.031 47.619 0.34 0.00 38.20 4.01
606 610 7.540400 AAGATAACGATATCTCGCAGAATCAAG 59.460 37.037 14.76 0.00 46.01 3.02
607 611 7.327032 CAAGATAACGATATCTCGCAGAATCAA 59.673 37.037 14.76 0.00 46.01 2.57
608 612 6.803807 CAAGATAACGATATCTCGCAGAATCA 59.196 38.462 14.76 0.00 46.01 2.57
609 613 6.252441 CCAAGATAACGATATCTCGCAGAATC 59.748 42.308 14.76 0.00 46.01 2.52
610 614 6.096036 CCAAGATAACGATATCTCGCAGAAT 58.904 40.000 14.76 0.00 46.01 2.40
611 615 5.009710 ACCAAGATAACGATATCTCGCAGAA 59.990 40.000 14.76 0.00 46.01 3.02
612 616 4.519350 ACCAAGATAACGATATCTCGCAGA 59.481 41.667 14.76 0.00 46.01 4.26
613 617 4.799678 ACCAAGATAACGATATCTCGCAG 58.200 43.478 14.76 7.43 46.01 5.18
614 618 4.848562 ACCAAGATAACGATATCTCGCA 57.151 40.909 14.76 0.00 46.01 5.10
615 619 5.107453 CCAAACCAAGATAACGATATCTCGC 60.107 44.000 14.76 0.00 46.01 5.03
616 620 5.983720 ACCAAACCAAGATAACGATATCTCG 59.016 40.000 14.76 10.75 46.01 4.04
617 621 7.787725 AACCAAACCAAGATAACGATATCTC 57.212 36.000 14.76 0.00 46.01 2.75
619 623 7.148137 ACCAAACCAAACCAAGATAACGATATC 60.148 37.037 4.61 4.61 38.58 1.63
620 624 6.661805 ACCAAACCAAACCAAGATAACGATAT 59.338 34.615 0.00 0.00 0.00 1.63
621 625 6.005198 ACCAAACCAAACCAAGATAACGATA 58.995 36.000 0.00 0.00 0.00 2.92
622 626 4.830600 ACCAAACCAAACCAAGATAACGAT 59.169 37.500 0.00 0.00 0.00 3.73
623 627 4.208746 ACCAAACCAAACCAAGATAACGA 58.791 39.130 0.00 0.00 0.00 3.85
624 628 4.577834 ACCAAACCAAACCAAGATAACG 57.422 40.909 0.00 0.00 0.00 3.18
625 629 5.924254 GCTAACCAAACCAAACCAAGATAAC 59.076 40.000 0.00 0.00 0.00 1.89
626 630 5.836358 AGCTAACCAAACCAAACCAAGATAA 59.164 36.000 0.00 0.00 0.00 1.75
627 631 5.390387 AGCTAACCAAACCAAACCAAGATA 58.610 37.500 0.00 0.00 0.00 1.98
628 632 4.223144 AGCTAACCAAACCAAACCAAGAT 58.777 39.130 0.00 0.00 0.00 2.40
629 633 3.634910 GAGCTAACCAAACCAAACCAAGA 59.365 43.478 0.00 0.00 0.00 3.02
630 634 3.550030 CGAGCTAACCAAACCAAACCAAG 60.550 47.826 0.00 0.00 0.00 3.61
631 635 2.359531 CGAGCTAACCAAACCAAACCAA 59.640 45.455 0.00 0.00 0.00 3.67
632 636 1.950909 CGAGCTAACCAAACCAAACCA 59.049 47.619 0.00 0.00 0.00 3.67
633 637 1.335597 GCGAGCTAACCAAACCAAACC 60.336 52.381 0.00 0.00 0.00 3.27
634 638 1.335597 GGCGAGCTAACCAAACCAAAC 60.336 52.381 0.00 0.00 0.00 2.93
635 639 0.955905 GGCGAGCTAACCAAACCAAA 59.044 50.000 0.00 0.00 0.00 3.28
636 640 1.231958 CGGCGAGCTAACCAAACCAA 61.232 55.000 0.00 0.00 0.00 3.67
637 641 1.669760 CGGCGAGCTAACCAAACCA 60.670 57.895 0.00 0.00 0.00 3.67
638 642 2.396157 CCGGCGAGCTAACCAAACC 61.396 63.158 9.30 0.00 0.00 3.27
639 643 3.035576 GCCGGCGAGCTAACCAAAC 62.036 63.158 12.58 0.00 0.00 2.93
661 665 2.222678 GGTATGCACAGATCATGAAGCG 59.777 50.000 0.00 0.00 36.64 4.68
676 680 5.505173 ACTTCAACATTATGCTGGTATGC 57.495 39.130 0.00 0.00 0.00 3.14
725 736 5.252547 AGTTTGTTCTGCCAACCAATTTTT 58.747 33.333 0.00 0.00 0.00 1.94
726 737 4.842574 AGTTTGTTCTGCCAACCAATTTT 58.157 34.783 0.00 0.00 0.00 1.82
727 738 4.486125 AGTTTGTTCTGCCAACCAATTT 57.514 36.364 0.00 0.00 0.00 1.82
728 739 5.070313 ACATAGTTTGTTCTGCCAACCAATT 59.930 36.000 0.00 0.00 33.74 2.32
729 740 4.588528 ACATAGTTTGTTCTGCCAACCAAT 59.411 37.500 0.00 0.00 33.74 3.16
732 743 3.857010 GCACATAGTTTGTTCTGCCAACC 60.857 47.826 0.00 0.00 36.00 3.77
733 744 3.004734 AGCACATAGTTTGTTCTGCCAAC 59.995 43.478 0.00 0.00 36.00 3.77
783 794 8.034215 CCTTGTCAATGTGCCTTTATGAATAAA 58.966 33.333 0.00 0.00 0.00 1.40
817 828 5.279506 GGTTCTTGTTCCTACTCTGTCATCA 60.280 44.000 0.00 0.00 0.00 3.07
836 847 4.823989 CCTTTCAGTTCATGTTCAGGTTCT 59.176 41.667 0.00 0.00 0.00 3.01
840 851 5.067674 TGTTTCCTTTCAGTTCATGTTCAGG 59.932 40.000 0.00 0.00 0.00 3.86
841 852 6.135290 TGTTTCCTTTCAGTTCATGTTCAG 57.865 37.500 0.00 0.00 0.00 3.02
842 853 6.461370 CCATGTTTCCTTTCAGTTCATGTTCA 60.461 38.462 0.00 0.00 32.24 3.18
843 854 5.922544 CCATGTTTCCTTTCAGTTCATGTTC 59.077 40.000 0.00 0.00 32.24 3.18
844 855 5.739935 GCCATGTTTCCTTTCAGTTCATGTT 60.740 40.000 0.00 0.00 32.24 2.71
845 856 4.262164 GCCATGTTTCCTTTCAGTTCATGT 60.262 41.667 0.00 0.00 32.24 3.21
846 857 4.240096 GCCATGTTTCCTTTCAGTTCATG 58.760 43.478 0.00 0.00 0.00 3.07
847 858 3.057315 CGCCATGTTTCCTTTCAGTTCAT 60.057 43.478 0.00 0.00 0.00 2.57
848 859 2.293122 CGCCATGTTTCCTTTCAGTTCA 59.707 45.455 0.00 0.00 0.00 3.18
849 860 2.351738 CCGCCATGTTTCCTTTCAGTTC 60.352 50.000 0.00 0.00 0.00 3.01
850 861 1.613437 CCGCCATGTTTCCTTTCAGTT 59.387 47.619 0.00 0.00 0.00 3.16
851 862 1.202879 TCCGCCATGTTTCCTTTCAGT 60.203 47.619 0.00 0.00 0.00 3.41
852 863 1.200020 GTCCGCCATGTTTCCTTTCAG 59.800 52.381 0.00 0.00 0.00 3.02
853 864 1.243902 GTCCGCCATGTTTCCTTTCA 58.756 50.000 0.00 0.00 0.00 2.69
854 865 1.243902 TGTCCGCCATGTTTCCTTTC 58.756 50.000 0.00 0.00 0.00 2.62
855 866 1.923356 ATGTCCGCCATGTTTCCTTT 58.077 45.000 0.00 0.00 30.69 3.11
860 871 4.584325 AGCAATTATATGTCCGCCATGTTT 59.416 37.500 0.00 0.00 34.86 2.83
878 889 1.303309 GCGCCTTGATCTGTAGCAAT 58.697 50.000 0.00 0.00 29.04 3.56
917 932 1.413767 CGGAAGCAGAACATCGGTCG 61.414 60.000 0.00 0.00 0.00 4.79
924 939 4.697756 CCGGCCGGAAGCAGAACA 62.698 66.667 41.82 0.00 46.50 3.18
963 988 1.644295 CTGATCAACTTGTCGTCGTCG 59.356 52.381 0.00 0.00 38.55 5.12
964 989 1.387084 GCTGATCAACTTGTCGTCGTC 59.613 52.381 0.00 0.00 0.00 4.20
965 990 1.000163 AGCTGATCAACTTGTCGTCGT 60.000 47.619 0.00 0.00 0.00 4.34
966 991 1.388093 CAGCTGATCAACTTGTCGTCG 59.612 52.381 8.42 0.00 0.00 5.12
996 1021 4.210746 CGACAGCAATAAGTCTCCATGATG 59.789 45.833 0.00 0.00 33.87 3.07
1037 1062 2.844839 GTCCCTGGGATCCCTCCG 60.845 72.222 31.05 18.43 43.11 4.63
1117 1145 1.074775 GTGAAGGATGTGGTGCCCA 59.925 57.895 0.00 0.00 0.00 5.36
1126 1154 0.523546 CGTCGACGAGGTGAAGGATG 60.524 60.000 33.35 0.00 43.02 3.51
1204 1232 3.837570 CTGCTGCTGCTGGTGGTGA 62.838 63.158 17.00 0.00 40.48 4.02
1289 1322 1.238439 CCATAGCGCATACCAAAGGG 58.762 55.000 11.47 0.00 41.29 3.95
1294 1333 3.906660 GCTACCATAGCGCATACCA 57.093 52.632 11.47 0.00 42.62 3.25
1351 1391 2.719798 GCCTATAAAACGCAGCACATG 58.280 47.619 0.00 0.00 0.00 3.21
1408 1483 2.022195 GTGCCTCTCCTGACACGTATA 58.978 52.381 0.00 0.00 0.00 1.47
1409 1484 0.818296 GTGCCTCTCCTGACACGTAT 59.182 55.000 0.00 0.00 0.00 3.06
1427 1502 0.905809 TACCACACCGCCACCTATGT 60.906 55.000 0.00 0.00 0.00 2.29
1607 1702 3.335534 AAGGTCGCGCAACACGTC 61.336 61.111 8.75 0.00 46.11 4.34
1608 1703 3.636043 CAAGGTCGCGCAACACGT 61.636 61.111 8.75 0.00 46.11 4.49
1619 1716 2.820037 GGTAGCCGCTGCAAGGTC 60.820 66.667 10.83 2.87 41.13 3.85
1765 1884 6.265422 ACCATGATCCGATATTTTCCTTTTCC 59.735 38.462 0.00 0.00 0.00 3.13
1766 1885 7.277174 ACCATGATCCGATATTTTCCTTTTC 57.723 36.000 0.00 0.00 0.00 2.29
1767 1886 8.760980 TTACCATGATCCGATATTTTCCTTTT 57.239 30.769 0.00 0.00 0.00 2.27
1768 1887 8.760980 TTTACCATGATCCGATATTTTCCTTT 57.239 30.769 0.00 0.00 0.00 3.11
1769 1888 8.760980 TTTTACCATGATCCGATATTTTCCTT 57.239 30.769 0.00 0.00 0.00 3.36
1770 1889 8.940397 ATTTTACCATGATCCGATATTTTCCT 57.060 30.769 0.00 0.00 0.00 3.36
1811 1930 0.250081 TTGCAGTATGTGACCACGCA 60.250 50.000 0.00 0.00 39.31 5.24
1816 1935 2.472695 TCTGGTTGCAGTATGTGACC 57.527 50.000 0.00 0.00 41.50 4.02
1825 1944 1.247567 ATTTCGGGTTCTGGTTGCAG 58.752 50.000 0.00 0.00 0.00 4.41
1826 1945 1.698506 AATTTCGGGTTCTGGTTGCA 58.301 45.000 0.00 0.00 0.00 4.08
1827 1946 3.926821 TTAATTTCGGGTTCTGGTTGC 57.073 42.857 0.00 0.00 0.00 4.17
1885 2019 1.737236 GTCGGCTTGTGATTGCATACA 59.263 47.619 0.00 0.00 0.00 2.29
1888 2022 0.322816 AGGTCGGCTTGTGATTGCAT 60.323 50.000 0.00 0.00 0.00 3.96
1940 2074 4.810790 CGACCTAAGGATTTATCTGCGAT 58.189 43.478 0.00 0.00 0.00 4.58
1999 2133 8.211838 GGCTATTTTTACTACGCAAACAAAAAG 58.788 33.333 0.00 0.00 33.16 2.27
2005 2139 5.090757 GTGGGCTATTTTTACTACGCAAAC 58.909 41.667 0.00 0.00 0.00 2.93
2051 2199 7.851822 ACTTACTATGCAAATGTTCAAAACG 57.148 32.000 0.00 0.00 0.00 3.60
2074 2222 9.442033 GCAAACGTAATCTATGGGTTATTTTAC 57.558 33.333 0.00 0.00 0.00 2.01
2075 2223 9.175312 TGCAAACGTAATCTATGGGTTATTTTA 57.825 29.630 0.00 0.00 0.00 1.52
2076 2224 8.057536 TGCAAACGTAATCTATGGGTTATTTT 57.942 30.769 0.00 0.00 0.00 1.82
2078 2226 7.817418 ATGCAAACGTAATCTATGGGTTATT 57.183 32.000 0.00 0.00 0.00 1.40
2081 2229 8.911918 TTATATGCAAACGTAATCTATGGGTT 57.088 30.769 0.00 0.00 0.00 4.11
2088 2236 8.551205 CACATGACTTATATGCAAACGTAATCT 58.449 33.333 0.00 0.00 0.00 2.40
2094 2243 9.502145 AAATTACACATGACTTATATGCAAACG 57.498 29.630 0.00 0.00 0.00 3.60
2139 2288 3.498774 ATGAGACAGTTTGCCTCAACT 57.501 42.857 0.00 0.00 39.94 3.16
2140 2289 3.565482 TGAATGAGACAGTTTGCCTCAAC 59.435 43.478 0.00 0.00 39.94 3.18
2141 2290 3.819368 TGAATGAGACAGTTTGCCTCAA 58.181 40.909 0.00 0.00 39.94 3.02
2142 2291 3.490439 TGAATGAGACAGTTTGCCTCA 57.510 42.857 0.00 0.00 40.68 3.86
2143 2292 5.048504 TGAAATGAATGAGACAGTTTGCCTC 60.049 40.000 0.00 0.00 0.00 4.70
2144 2293 4.828939 TGAAATGAATGAGACAGTTTGCCT 59.171 37.500 0.00 0.00 0.00 4.75
2145 2294 5.125100 TGAAATGAATGAGACAGTTTGCC 57.875 39.130 0.00 0.00 0.00 4.52
2146 2295 8.642020 GTTAATGAAATGAATGAGACAGTTTGC 58.358 33.333 0.00 0.00 0.00 3.68
2147 2296 9.681692 TGTTAATGAAATGAATGAGACAGTTTG 57.318 29.630 0.00 0.00 0.00 2.93
2148 2297 9.683069 GTGTTAATGAAATGAATGAGACAGTTT 57.317 29.630 0.00 0.00 0.00 2.66
2150 2299 7.173218 ACGTGTTAATGAAATGAATGAGACAGT 59.827 33.333 0.00 0.00 0.00 3.55
2151 2300 7.521529 ACGTGTTAATGAAATGAATGAGACAG 58.478 34.615 0.00 0.00 0.00 3.51
2154 2303 8.563732 TCAAACGTGTTAATGAAATGAATGAGA 58.436 29.630 0.00 0.00 0.00 3.27
2155 2304 8.726650 TCAAACGTGTTAATGAAATGAATGAG 57.273 30.769 0.00 0.00 0.00 2.90
2156 2305 9.689976 ATTCAAACGTGTTAATGAAATGAATGA 57.310 25.926 4.50 0.00 35.62 2.57
2157 2306 9.941991 GATTCAAACGTGTTAATGAAATGAATG 57.058 29.630 9.87 0.00 35.72 2.67
2158 2307 9.139174 GGATTCAAACGTGTTAATGAAATGAAT 57.861 29.630 4.50 5.48 37.61 2.57
2161 2310 7.273381 GGAGGATTCAAACGTGTTAATGAAATG 59.727 37.037 4.50 0.00 35.62 2.32
2162 2311 7.312899 GGAGGATTCAAACGTGTTAATGAAAT 58.687 34.615 4.50 0.00 35.62 2.17
2164 2313 5.182380 GGGAGGATTCAAACGTGTTAATGAA 59.818 40.000 0.00 3.19 36.35 2.57
2167 2316 4.918588 AGGGAGGATTCAAACGTGTTAAT 58.081 39.130 0.00 0.00 0.00 1.40
2168 2317 4.202377 TGAGGGAGGATTCAAACGTGTTAA 60.202 41.667 0.00 0.00 0.00 2.01
2169 2318 3.325425 TGAGGGAGGATTCAAACGTGTTA 59.675 43.478 0.00 0.00 0.00 2.41
2171 2320 1.697432 TGAGGGAGGATTCAAACGTGT 59.303 47.619 0.00 0.00 0.00 4.49
2172 2321 2.289694 ACTGAGGGAGGATTCAAACGTG 60.290 50.000 0.00 0.00 0.00 4.49
2173 2322 1.978580 ACTGAGGGAGGATTCAAACGT 59.021 47.619 0.00 0.00 0.00 3.99
2174 2323 2.770164 ACTGAGGGAGGATTCAAACG 57.230 50.000 0.00 0.00 0.00 3.60
2175 2324 5.805728 TCTTTACTGAGGGAGGATTCAAAC 58.194 41.667 0.00 0.00 0.00 2.93
2178 2327 6.642733 ATTTCTTTACTGAGGGAGGATTCA 57.357 37.500 0.00 0.00 0.00 2.57
2179 2328 9.462606 TTTTATTTCTTTACTGAGGGAGGATTC 57.537 33.333 0.00 0.00 0.00 2.52
2180 2329 9.822727 TTTTTATTTCTTTACTGAGGGAGGATT 57.177 29.630 0.00 0.00 0.00 3.01
2205 2354 1.156736 CGAATGGTGGACGCTCTTTT 58.843 50.000 0.00 0.00 0.00 2.27
2206 2355 0.034896 ACGAATGGTGGACGCTCTTT 59.965 50.000 0.00 0.00 0.00 2.52
2207 2356 0.892755 TACGAATGGTGGACGCTCTT 59.107 50.000 0.00 0.00 0.00 2.85
2208 2357 0.892755 TTACGAATGGTGGACGCTCT 59.107 50.000 0.00 0.00 0.00 4.09
2209 2358 1.278238 CTTACGAATGGTGGACGCTC 58.722 55.000 0.00 0.00 0.00 5.03
2210 2359 0.108329 CCTTACGAATGGTGGACGCT 60.108 55.000 0.00 0.00 0.00 5.07
2211 2360 1.087771 CCCTTACGAATGGTGGACGC 61.088 60.000 0.00 0.00 0.00 5.19
2212 2361 1.087771 GCCCTTACGAATGGTGGACG 61.088 60.000 0.00 0.00 0.00 4.79
2213 2362 0.035820 TGCCCTTACGAATGGTGGAC 60.036 55.000 0.00 0.00 0.00 4.02
2214 2363 0.251916 CTGCCCTTACGAATGGTGGA 59.748 55.000 0.00 0.00 0.00 4.02
2228 2460 1.712977 CGCATCTGAAAGCTCTGCCC 61.713 60.000 0.00 0.00 32.37 5.36
2236 2468 2.208431 GGAGTCATCCGCATCTGAAAG 58.792 52.381 0.00 0.00 35.37 2.62
2248 2481 4.356979 TCCACGGGAGGAGTCATC 57.643 61.111 0.00 0.00 32.77 2.92
2283 2517 3.125146 TGACCAAATTTCGCAGATTCTCG 59.875 43.478 0.00 0.00 35.04 4.04
2290 2524 4.954238 GTTTCTTGACCAAATTTCGCAG 57.046 40.909 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.