Multiple sequence alignment - TraesCS2B01G474200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G474200 chr2B 100.000 2638 0 0 1 2638 671211776 671209139 0.000000e+00 4872.0
1 TraesCS2B01G474200 chr2B 93.897 213 8 4 1 211 671238724 671238515 1.520000e-82 316.0
2 TraesCS2B01G474200 chr2D 92.205 1719 62 22 519 2219 561932088 561930424 0.000000e+00 2366.0
3 TraesCS2B01G474200 chr2D 88.722 532 32 11 2 526 561933391 561932881 2.230000e-175 625.0
4 TraesCS2B01G474200 chr2D 85.246 61 2 1 2318 2378 561930204 561930257 3.670000e-04 56.5
5 TraesCS2B01G474200 chr2A 90.217 1247 47 29 395 1630 702191215 702190033 0.000000e+00 1557.0
6 TraesCS2B01G474200 chr2A 83.784 666 34 16 1648 2309 702189757 702189162 4.930000e-157 564.0
7 TraesCS2B01G474200 chr2A 89.776 401 24 9 1 396 702191764 702191376 5.070000e-137 497.0
8 TraesCS2B01G474200 chr1A 95.122 41 2 0 2306 2346 21875624 21875664 6.090000e-07 65.8
9 TraesCS2B01G474200 chr4A 100.000 33 0 0 2352 2384 538887964 538887996 7.880000e-06 62.1
10 TraesCS2B01G474200 chr6B 92.500 40 2 1 2339 2378 519399605 519399643 3.670000e-04 56.5
11 TraesCS2B01G474200 chrUn 94.286 35 2 0 2356 2390 70759313 70759279 1.000000e-03 54.7
12 TraesCS2B01G474200 chrUn 94.286 35 2 0 2356 2390 70781495 70781461 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G474200 chr2B 671209139 671211776 2637 True 4872.000000 4872 100.000000 1 2638 1 chr2B.!!$R1 2637
1 TraesCS2B01G474200 chr2D 561930424 561933391 2967 True 1495.500000 2366 90.463500 2 2219 2 chr2D.!!$R1 2217
2 TraesCS2B01G474200 chr2A 702189162 702191764 2602 True 872.666667 1557 87.925667 1 2309 3 chr2A.!!$R1 2308

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 189 0.037877 ATGAGGCAAGTCAAGCTGCT 59.962 50.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 2951 0.103572 GCATTCGCTTTGATGGCCAT 59.896 50.0 20.96 20.96 34.3 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.822164 TTTCCTTCTCCGATCGGTCC 59.178 55.000 32.15 0.00 36.47 4.46
76 77 3.665675 GACGAGCGGCCAAGTCCAT 62.666 63.158 2.24 0.00 0.00 3.41
184 189 0.037877 ATGAGGCAAGTCAAGCTGCT 59.962 50.000 0.00 0.00 0.00 4.24
237 242 0.999406 CGCCATCTCGTCACGAATTT 59.001 50.000 0.00 0.00 34.74 1.82
297 304 3.655615 ACACCCTAACAGAACACCAAA 57.344 42.857 0.00 0.00 0.00 3.28
362 374 7.734924 TGGATGATTATGAAAGTGCATCTAC 57.265 36.000 0.00 0.00 34.22 2.59
375 387 9.548208 GAAAGTGCATCTACTAATTTTGTTCTC 57.452 33.333 0.00 0.00 0.00 2.87
376 388 7.295952 AGTGCATCTACTAATTTTGTTCTCG 57.704 36.000 0.00 0.00 0.00 4.04
377 389 6.874134 AGTGCATCTACTAATTTTGTTCTCGT 59.126 34.615 0.00 0.00 0.00 4.18
378 390 8.033038 AGTGCATCTACTAATTTTGTTCTCGTA 58.967 33.333 0.00 0.00 0.00 3.43
379 391 8.108782 GTGCATCTACTAATTTTGTTCTCGTAC 58.891 37.037 0.00 0.00 0.00 3.67
447 621 1.609580 GCATACTTCCAACCCACGTCA 60.610 52.381 0.00 0.00 0.00 4.35
454 628 1.300971 CCAACCCACGTCATCTGCAG 61.301 60.000 7.63 7.63 0.00 4.41
510 684 5.391736 CGAAATCAGAAGCTGCAAAAGAGAT 60.392 40.000 1.02 0.00 0.00 2.75
544 1520 9.807921 ATAGGTTTTAACTCAATTTCAGAAGGA 57.192 29.630 0.00 0.00 0.00 3.36
545 1521 8.533569 AGGTTTTAACTCAATTTCAGAAGGAA 57.466 30.769 0.00 0.00 0.00 3.36
654 1631 8.296713 TGCAGTTAAGATTTTGAAGACATTACC 58.703 33.333 0.00 0.00 0.00 2.85
679 1656 4.252971 TCAAGCAACAGGTACAGTACTC 57.747 45.455 10.62 1.34 0.00 2.59
689 1666 2.694109 GGTACAGTACTCAGTCCATCCC 59.306 54.545 10.62 0.00 0.00 3.85
748 1725 8.078596 ACTCTTAGCACTTAAATTTGAGCTTTG 58.921 33.333 9.73 2.85 32.77 2.77
749 1726 7.940850 TCTTAGCACTTAAATTTGAGCTTTGT 58.059 30.769 9.73 0.00 32.77 2.83
750 1727 8.076178 TCTTAGCACTTAAATTTGAGCTTTGTC 58.924 33.333 9.73 0.00 32.77 3.18
788 1765 3.117474 TCGTCCTCCTCCATCTAATCAGT 60.117 47.826 0.00 0.00 0.00 3.41
789 1766 3.639094 CGTCCTCCTCCATCTAATCAGTT 59.361 47.826 0.00 0.00 0.00 3.16
790 1767 4.827835 CGTCCTCCTCCATCTAATCAGTTA 59.172 45.833 0.00 0.00 0.00 2.24
791 1768 5.478679 CGTCCTCCTCCATCTAATCAGTTAT 59.521 44.000 0.00 0.00 0.00 1.89
792 1769 6.015010 CGTCCTCCTCCATCTAATCAGTTATT 60.015 42.308 0.00 0.00 0.00 1.40
793 1770 7.382898 GTCCTCCTCCATCTAATCAGTTATTC 58.617 42.308 0.00 0.00 0.00 1.75
794 1771 7.015682 GTCCTCCTCCATCTAATCAGTTATTCA 59.984 40.741 0.00 0.00 0.00 2.57
795 1772 7.234371 TCCTCCTCCATCTAATCAGTTATTCAG 59.766 40.741 0.00 0.00 0.00 3.02
812 1789 4.691860 TTCAGTTACCTACACGACTAGC 57.308 45.455 0.00 0.00 0.00 3.42
913 1890 3.502123 TCATACCCGAATTTCCCATCC 57.498 47.619 0.00 0.00 0.00 3.51
938 1915 3.057315 CAGACGCCACCTGAATTTCATTT 60.057 43.478 0.00 0.00 33.65 2.32
966 1944 2.551504 GGATCCTCCCTACGTCTCTCTC 60.552 59.091 3.84 0.00 0.00 3.20
968 1946 1.764134 TCCTCCCTACGTCTCTCTCTC 59.236 57.143 0.00 0.00 0.00 3.20
972 1950 4.773674 CCTCCCTACGTCTCTCTCTCTATA 59.226 50.000 0.00 0.00 0.00 1.31
973 1951 5.424252 CCTCCCTACGTCTCTCTCTCTATAT 59.576 48.000 0.00 0.00 0.00 0.86
974 1952 6.608405 CCTCCCTACGTCTCTCTCTCTATATA 59.392 46.154 0.00 0.00 0.00 0.86
975 1953 7.289317 CCTCCCTACGTCTCTCTCTCTATATAT 59.711 44.444 0.00 0.00 0.00 0.86
976 1954 9.358406 CTCCCTACGTCTCTCTCTCTATATATA 57.642 40.741 0.00 0.00 0.00 0.86
977 1955 9.886337 TCCCTACGTCTCTCTCTCTATATATAT 57.114 37.037 0.00 0.00 0.00 0.86
1003 1981 1.313091 TGATGTCGTCTCCCTCCACG 61.313 60.000 0.00 0.00 37.36 4.94
1005 1983 0.898789 ATGTCGTCTCCCTCCACGTT 60.899 55.000 0.00 0.00 37.30 3.99
1066 2044 1.065102 CGCAAAGATGATGAGGCCTTG 59.935 52.381 6.77 0.00 0.00 3.61
1079 2057 1.748500 GCCTTGGCAAGCTCTCTCC 60.749 63.158 21.77 0.03 0.00 3.71
1136 2117 3.753434 AGCGCCGTCTCCACTCTG 61.753 66.667 2.29 0.00 0.00 3.35
1166 2147 3.671411 AAGTCGGTCAGCGCGAGT 61.671 61.111 12.10 0.00 0.00 4.18
1176 2157 1.443872 AGCGCGAGTAACAAGGACG 60.444 57.895 12.10 0.00 0.00 4.79
1323 2304 1.521457 GCGACCATCAAGGCATCGA 60.521 57.895 0.00 0.00 43.14 3.59
1336 2317 0.672401 GCATCGAAAGGGGACGACAA 60.672 55.000 0.00 0.00 41.17 3.18
1349 2330 0.978146 ACGACAAGAGGATCCAGGGG 60.978 60.000 15.82 3.15 33.66 4.79
1433 2414 1.084370 GCATCTCGTCGGGGAAGTTG 61.084 60.000 0.00 0.00 0.00 3.16
1656 2912 1.893137 TCGTGGTGAACTGACATAGCT 59.107 47.619 0.00 0.00 0.00 3.32
1692 2948 1.129624 GCACACAATTTGCGGACGATA 59.870 47.619 0.00 0.00 0.00 2.92
1693 2949 2.223249 GCACACAATTTGCGGACGATAT 60.223 45.455 0.00 0.00 0.00 1.63
1694 2950 3.607439 CACACAATTTGCGGACGATATC 58.393 45.455 0.00 0.00 0.00 1.63
1695 2951 3.063316 CACACAATTTGCGGACGATATCA 59.937 43.478 3.12 0.00 0.00 2.15
1718 2974 1.205657 CCATCAAAGCGAATGCATGC 58.794 50.000 11.82 11.82 46.23 4.06
1719 2975 1.470112 CCATCAAAGCGAATGCATGCA 60.470 47.619 25.04 25.04 46.23 3.96
1720 2976 2.469826 CATCAAAGCGAATGCATGCAT 58.530 42.857 27.46 27.46 46.23 3.96
1721 2977 1.915952 TCAAAGCGAATGCATGCATG 58.084 45.000 32.79 22.70 46.23 4.06
1726 2982 1.202817 AGCGAATGCATGCATGAACAA 59.797 42.857 32.79 12.14 46.23 2.83
1754 3010 4.088923 CGTGCATCAATGTTTGTCAATGTC 59.911 41.667 0.00 0.00 0.00 3.06
1822 3078 3.806316 ACGAATTTTGTACGCAAGAGG 57.194 42.857 0.00 0.00 43.62 3.69
1834 3090 3.261250 CAAGAGGTGCTTGCCAGAT 57.739 52.632 0.00 0.00 46.67 2.90
1883 3139 6.339730 CCATTTGTTGATTAGCAAGGCAATA 58.660 36.000 0.00 0.00 37.12 1.90
1930 3186 4.319766 GCCACATACATCAAAATAGCGGAG 60.320 45.833 0.00 0.00 0.00 4.63
1932 3188 4.816385 CACATACATCAAAATAGCGGAGGT 59.184 41.667 0.00 0.00 44.89 3.85
1991 3247 5.177881 TGTTTTATGTACAGCGAAACGTCAT 59.822 36.000 18.57 0.00 33.98 3.06
1992 3248 4.833469 TTATGTACAGCGAAACGTCATG 57.167 40.909 0.33 0.00 0.00 3.07
1997 3257 1.337728 ACAGCGAAACGTCATGATGGA 60.338 47.619 18.97 0.00 0.00 3.41
2064 3324 3.490759 GTCATGCTGTGTCCGGCG 61.491 66.667 0.00 0.00 46.53 6.46
2065 3325 4.758251 TCATGCTGTGTCCGGCGG 62.758 66.667 22.51 22.51 46.53 6.13
2157 3417 2.251371 CAGTCAGCGTCGTCGTGA 59.749 61.111 3.66 3.89 39.49 4.35
2164 3424 2.202440 CGTCGTCGTGAGCGGATT 60.202 61.111 0.00 0.00 38.89 3.01
2171 3431 2.125512 GTGAGCGGATTGAGGCGT 60.126 61.111 0.00 0.00 0.00 5.68
2181 3441 0.537143 ATTGAGGCGTCAAACCAGCA 60.537 50.000 24.17 1.51 45.88 4.41
2183 3443 1.236616 TGAGGCGTCAAACCAGCATG 61.237 55.000 6.64 0.00 0.00 4.06
2184 3444 2.126346 GGCGTCAAACCAGCATGC 60.126 61.111 10.51 10.51 31.97 4.06
2185 3445 2.502510 GCGTCAAACCAGCATGCG 60.503 61.111 13.01 7.31 31.97 4.73
2186 3446 2.502510 CGTCAAACCAGCATGCGC 60.503 61.111 13.01 0.00 38.99 6.09
2220 3480 2.210116 GAGTCGAAGGTGCAAACTTCA 58.790 47.619 24.02 13.28 43.43 3.02
2221 3481 1.940613 AGTCGAAGGTGCAAACTTCAC 59.059 47.619 24.02 20.38 43.43 3.18
2222 3482 1.668751 GTCGAAGGTGCAAACTTCACA 59.331 47.619 24.02 12.41 43.43 3.58
2232 3492 4.094739 GTGCAAACTTCACAAAAATTGGCT 59.905 37.500 0.00 0.00 34.73 4.75
2233 3493 5.293079 GTGCAAACTTCACAAAAATTGGCTA 59.707 36.000 0.00 0.00 34.73 3.93
2234 3494 6.018016 GTGCAAACTTCACAAAAATTGGCTAT 60.018 34.615 0.00 0.00 34.73 2.97
2235 3495 7.170658 GTGCAAACTTCACAAAAATTGGCTATA 59.829 33.333 0.00 0.00 34.73 1.31
2236 3496 7.712639 TGCAAACTTCACAAAAATTGGCTATAA 59.287 29.630 0.00 0.00 34.12 0.98
2237 3497 8.720562 GCAAACTTCACAAAAATTGGCTATAAT 58.279 29.630 0.00 0.00 34.12 1.28
2276 3536 5.043737 TCCTAAATTATACTGTGTGGGCC 57.956 43.478 0.00 0.00 0.00 5.80
2286 3546 2.173519 CTGTGTGGGCCTCATGATTTT 58.826 47.619 12.01 0.00 0.00 1.82
2287 3547 2.564062 CTGTGTGGGCCTCATGATTTTT 59.436 45.455 12.01 0.00 0.00 1.94
2302 3562 8.749841 TCATGATTTTTAACCAAATGTTACCG 57.250 30.769 0.00 0.00 39.13 4.02
2305 3565 7.490000 TGATTTTTAACCAAATGTTACCGTGT 58.510 30.769 0.00 0.00 39.13 4.49
2309 3569 6.783892 TTAACCAAATGTTACCGTGTACTC 57.216 37.500 0.00 0.00 39.13 2.59
2310 3570 3.319755 ACCAAATGTTACCGTGTACTCG 58.680 45.455 10.28 10.28 0.00 4.18
2311 3571 2.093152 CCAAATGTTACCGTGTACTCGC 59.907 50.000 11.71 0.00 0.00 5.03
2312 3572 2.991190 CAAATGTTACCGTGTACTCGCT 59.009 45.455 11.71 1.13 0.00 4.93
2313 3573 3.308438 AATGTTACCGTGTACTCGCTT 57.692 42.857 11.71 3.72 0.00 4.68
2314 3574 2.798976 TGTTACCGTGTACTCGCTTT 57.201 45.000 11.71 1.39 0.00 3.51
2315 3575 2.396601 TGTTACCGTGTACTCGCTTTG 58.603 47.619 11.71 1.25 0.00 2.77
2316 3576 2.223782 TGTTACCGTGTACTCGCTTTGT 60.224 45.455 11.71 6.95 0.00 2.83
2317 3577 3.004210 TGTTACCGTGTACTCGCTTTGTA 59.996 43.478 11.71 6.04 0.00 2.41
2318 3578 2.798976 ACCGTGTACTCGCTTTGTAA 57.201 45.000 11.71 0.00 0.00 2.41
2319 3579 3.096489 ACCGTGTACTCGCTTTGTAAA 57.904 42.857 11.71 0.00 0.00 2.01
2320 3580 3.054878 ACCGTGTACTCGCTTTGTAAAG 58.945 45.455 11.71 0.05 39.03 1.85
2321 3581 3.243501 ACCGTGTACTCGCTTTGTAAAGA 60.244 43.478 11.71 0.00 38.28 2.52
2322 3582 3.737266 CCGTGTACTCGCTTTGTAAAGAA 59.263 43.478 11.71 0.00 38.28 2.52
2323 3583 4.209703 CCGTGTACTCGCTTTGTAAAGAAA 59.790 41.667 11.71 0.00 38.28 2.52
2324 3584 5.107220 CCGTGTACTCGCTTTGTAAAGAAAT 60.107 40.000 11.71 0.00 38.28 2.17
2325 3585 6.089820 CCGTGTACTCGCTTTGTAAAGAAATA 59.910 38.462 11.71 0.00 38.28 1.40
2326 3586 7.201496 CCGTGTACTCGCTTTGTAAAGAAATAT 60.201 37.037 11.71 0.00 38.28 1.28
2327 3587 8.800972 CGTGTACTCGCTTTGTAAAGAAATATA 58.199 33.333 8.47 0.00 38.28 0.86
2332 3592 8.592998 ACTCGCTTTGTAAAGAAATATAAGACG 58.407 33.333 8.47 0.00 38.28 4.18
2333 3593 8.470040 TCGCTTTGTAAAGAAATATAAGACGT 57.530 30.769 8.47 0.00 38.28 4.34
2334 3594 8.928733 TCGCTTTGTAAAGAAATATAAGACGTT 58.071 29.630 8.47 0.00 38.28 3.99
2335 3595 9.537848 CGCTTTGTAAAGAAATATAAGACGTTT 57.462 29.630 8.47 0.00 38.28 3.60
2409 3669 8.642935 TGGAGGTCATATATTTCTCTACAGAG 57.357 38.462 0.00 0.00 43.36 3.35
2410 3670 7.177568 TGGAGGTCATATATTTCTCTACAGAGC 59.822 40.741 1.12 0.00 41.80 4.09
2411 3671 7.177568 GGAGGTCATATATTTCTCTACAGAGCA 59.822 40.741 1.12 0.00 41.80 4.26
2412 3672 8.484214 AGGTCATATATTTCTCTACAGAGCAA 57.516 34.615 1.12 0.00 41.80 3.91
2413 3673 8.584157 AGGTCATATATTTCTCTACAGAGCAAG 58.416 37.037 1.12 0.00 41.80 4.01
2414 3674 8.364142 GGTCATATATTTCTCTACAGAGCAAGT 58.636 37.037 1.12 0.00 41.80 3.16
2415 3675 9.757227 GTCATATATTTCTCTACAGAGCAAGTT 57.243 33.333 1.12 0.00 41.80 2.66
2420 3680 9.944376 ATATTTCTCTACAGAGCAAGTTTGTAA 57.056 29.630 1.12 0.00 41.80 2.41
2421 3681 7.715265 TTTCTCTACAGAGCAAGTTTGTAAG 57.285 36.000 1.12 0.00 41.80 2.34
2422 3682 6.406692 TCTCTACAGAGCAAGTTTGTAAGT 57.593 37.500 1.12 0.00 41.80 2.24
2423 3683 6.817184 TCTCTACAGAGCAAGTTTGTAAGTT 58.183 36.000 1.12 0.00 41.80 2.66
2424 3684 7.272978 TCTCTACAGAGCAAGTTTGTAAGTTT 58.727 34.615 1.12 0.00 41.80 2.66
2425 3685 8.418662 TCTCTACAGAGCAAGTTTGTAAGTTTA 58.581 33.333 1.12 0.00 41.80 2.01
2426 3686 8.951787 TCTACAGAGCAAGTTTGTAAGTTTAA 57.048 30.769 0.00 0.00 0.00 1.52
2427 3687 9.386010 TCTACAGAGCAAGTTTGTAAGTTTAAA 57.614 29.630 0.00 0.00 0.00 1.52
2430 3690 8.903820 ACAGAGCAAGTTTGTAAGTTTAAATCT 58.096 29.630 0.00 0.00 0.00 2.40
2435 3695 9.274065 GCAAGTTTGTAAGTTTAAATCTATCCG 57.726 33.333 0.00 0.00 0.00 4.18
2446 3706 9.826574 AGTTTAAATCTATCCGTAATTGTAGCA 57.173 29.630 0.00 0.00 0.00 3.49
2449 3709 9.990360 TTAAATCTATCCGTAATTGTAGCATGA 57.010 29.630 0.00 0.00 0.00 3.07
2450 3710 8.539770 AAATCTATCCGTAATTGTAGCATGAG 57.460 34.615 0.00 0.00 0.00 2.90
2451 3711 5.470368 TCTATCCGTAATTGTAGCATGAGC 58.530 41.667 0.00 0.00 42.56 4.26
2452 3712 3.535280 TCCGTAATTGTAGCATGAGCA 57.465 42.857 0.00 0.00 45.49 4.26
2453 3713 3.867857 TCCGTAATTGTAGCATGAGCAA 58.132 40.909 0.00 0.00 45.49 3.91
2454 3714 3.871006 TCCGTAATTGTAGCATGAGCAAG 59.129 43.478 0.00 0.00 45.49 4.01
2455 3715 3.002656 CCGTAATTGTAGCATGAGCAAGG 59.997 47.826 0.00 0.00 45.49 3.61
2456 3716 3.546815 CGTAATTGTAGCATGAGCAAGGC 60.547 47.826 0.00 0.00 45.49 4.35
2457 3717 2.431954 ATTGTAGCATGAGCAAGGCT 57.568 45.000 0.00 4.01 45.49 4.58
2458 3718 3.565764 ATTGTAGCATGAGCAAGGCTA 57.434 42.857 0.00 2.11 45.49 3.93
2459 3719 3.565764 TTGTAGCATGAGCAAGGCTAT 57.434 42.857 8.70 0.00 45.49 2.97
2460 3720 3.565764 TGTAGCATGAGCAAGGCTATT 57.434 42.857 8.70 0.00 45.49 1.73
2461 3721 3.889815 TGTAGCATGAGCAAGGCTATTT 58.110 40.909 8.70 0.00 45.49 1.40
2462 3722 5.034852 TGTAGCATGAGCAAGGCTATTTA 57.965 39.130 8.70 0.00 45.49 1.40
2463 3723 5.624159 TGTAGCATGAGCAAGGCTATTTAT 58.376 37.500 8.70 0.00 45.49 1.40
2464 3724 6.768483 TGTAGCATGAGCAAGGCTATTTATA 58.232 36.000 8.70 0.00 45.49 0.98
2465 3725 7.397221 TGTAGCATGAGCAAGGCTATTTATAT 58.603 34.615 8.70 0.00 45.49 0.86
2466 3726 6.754702 AGCATGAGCAAGGCTATTTATATG 57.245 37.500 0.00 0.00 45.49 1.78
2467 3727 6.243900 AGCATGAGCAAGGCTATTTATATGT 58.756 36.000 0.00 0.00 45.49 2.29
2468 3728 7.397221 AGCATGAGCAAGGCTATTTATATGTA 58.603 34.615 0.00 0.00 45.49 2.29
2469 3729 7.335422 AGCATGAGCAAGGCTATTTATATGTAC 59.665 37.037 0.00 0.00 45.49 2.90
2470 3730 7.119699 GCATGAGCAAGGCTATTTATATGTACA 59.880 37.037 0.00 0.00 39.88 2.90
2471 3731 8.663025 CATGAGCAAGGCTATTTATATGTACAG 58.337 37.037 0.33 0.00 39.88 2.74
2472 3732 7.161404 TGAGCAAGGCTATTTATATGTACAGG 58.839 38.462 0.33 0.00 39.88 4.00
2473 3733 7.079451 AGCAAGGCTATTTATATGTACAGGT 57.921 36.000 0.33 0.00 36.99 4.00
2474 3734 7.518188 AGCAAGGCTATTTATATGTACAGGTT 58.482 34.615 0.33 0.00 36.99 3.50
2475 3735 7.661847 AGCAAGGCTATTTATATGTACAGGTTC 59.338 37.037 0.33 0.00 36.99 3.62
2476 3736 7.661847 GCAAGGCTATTTATATGTACAGGTTCT 59.338 37.037 0.33 0.00 0.00 3.01
2479 3739 9.375974 AGGCTATTTATATGTACAGGTTCTACA 57.624 33.333 0.33 0.00 0.00 2.74
2480 3740 9.991906 GGCTATTTATATGTACAGGTTCTACAA 57.008 33.333 0.33 0.00 0.00 2.41
2490 3750 8.652810 TGTACAGGTTCTACAAAAACTTCTAC 57.347 34.615 0.00 0.00 0.00 2.59
2491 3751 6.839820 ACAGGTTCTACAAAAACTTCTACG 57.160 37.500 0.00 0.00 0.00 3.51
2492 3752 5.235831 ACAGGTTCTACAAAAACTTCTACGC 59.764 40.000 0.00 0.00 0.00 4.42
2493 3753 5.235616 CAGGTTCTACAAAAACTTCTACGCA 59.764 40.000 0.00 0.00 0.00 5.24
2494 3754 5.235831 AGGTTCTACAAAAACTTCTACGCAC 59.764 40.000 0.00 0.00 0.00 5.34
2495 3755 5.235831 GGTTCTACAAAAACTTCTACGCACT 59.764 40.000 0.00 0.00 0.00 4.40
2496 3756 6.421801 GGTTCTACAAAAACTTCTACGCACTA 59.578 38.462 0.00 0.00 0.00 2.74
2497 3757 7.359014 GGTTCTACAAAAACTTCTACGCACTAG 60.359 40.741 0.00 0.00 0.00 2.57
2498 3758 6.742109 TCTACAAAAACTTCTACGCACTAGT 58.258 36.000 0.00 0.00 0.00 2.57
2499 3759 7.205297 TCTACAAAAACTTCTACGCACTAGTT 58.795 34.615 0.00 0.00 32.52 2.24
2500 3760 6.283161 ACAAAAACTTCTACGCACTAGTTC 57.717 37.500 0.00 0.00 30.92 3.01
2501 3761 5.813672 ACAAAAACTTCTACGCACTAGTTCA 59.186 36.000 0.00 0.00 30.92 3.18
2502 3762 6.482308 ACAAAAACTTCTACGCACTAGTTCAT 59.518 34.615 0.00 0.00 30.92 2.57
2503 3763 7.012044 ACAAAAACTTCTACGCACTAGTTCATT 59.988 33.333 0.00 0.00 30.92 2.57
2504 3764 6.467723 AAACTTCTACGCACTAGTTCATTG 57.532 37.500 0.00 0.00 30.92 2.82
2505 3765 4.495422 ACTTCTACGCACTAGTTCATTGG 58.505 43.478 0.00 0.00 0.00 3.16
2506 3766 4.021368 ACTTCTACGCACTAGTTCATTGGT 60.021 41.667 0.00 0.00 0.00 3.67
2507 3767 4.530710 TCTACGCACTAGTTCATTGGTT 57.469 40.909 0.00 0.00 0.00 3.67
2508 3768 4.242475 TCTACGCACTAGTTCATTGGTTG 58.758 43.478 0.00 0.00 0.00 3.77
2509 3769 2.151202 ACGCACTAGTTCATTGGTTGG 58.849 47.619 0.00 0.00 0.00 3.77
2510 3770 1.135689 CGCACTAGTTCATTGGTTGGC 60.136 52.381 0.00 0.00 0.00 4.52
2511 3771 2.162681 GCACTAGTTCATTGGTTGGCT 58.837 47.619 0.00 0.00 0.00 4.75
2512 3772 3.343617 GCACTAGTTCATTGGTTGGCTA 58.656 45.455 0.00 0.00 0.00 3.93
2513 3773 3.756434 GCACTAGTTCATTGGTTGGCTAA 59.244 43.478 0.00 0.00 0.00 3.09
2514 3774 4.217550 GCACTAGTTCATTGGTTGGCTAAA 59.782 41.667 0.00 0.00 0.00 1.85
2515 3775 5.278758 GCACTAGTTCATTGGTTGGCTAAAA 60.279 40.000 0.00 0.00 0.00 1.52
2516 3776 6.737346 GCACTAGTTCATTGGTTGGCTAAAAA 60.737 38.462 0.00 0.00 0.00 1.94
2517 3777 6.640907 CACTAGTTCATTGGTTGGCTAAAAAC 59.359 38.462 0.00 0.00 0.00 2.43
2518 3778 5.606348 AGTTCATTGGTTGGCTAAAAACA 57.394 34.783 0.00 0.00 0.00 2.83
2519 3779 6.173427 AGTTCATTGGTTGGCTAAAAACAT 57.827 33.333 0.00 0.00 0.00 2.71
2520 3780 5.990996 AGTTCATTGGTTGGCTAAAAACATG 59.009 36.000 0.00 0.00 0.00 3.21
2521 3781 4.892433 TCATTGGTTGGCTAAAAACATGG 58.108 39.130 0.00 0.00 0.00 3.66
2522 3782 3.760580 TTGGTTGGCTAAAAACATGGG 57.239 42.857 0.00 0.00 0.00 4.00
2523 3783 2.964209 TGGTTGGCTAAAAACATGGGA 58.036 42.857 0.00 0.00 0.00 4.37
2524 3784 2.896685 TGGTTGGCTAAAAACATGGGAG 59.103 45.455 0.00 0.00 0.00 4.30
2525 3785 2.353704 GGTTGGCTAAAAACATGGGAGC 60.354 50.000 0.00 0.00 0.00 4.70
2526 3786 2.298729 GTTGGCTAAAAACATGGGAGCA 59.701 45.455 0.00 0.00 34.76 4.26
2527 3787 2.170166 TGGCTAAAAACATGGGAGCAG 58.830 47.619 0.00 0.00 34.76 4.24
2528 3788 2.171003 GGCTAAAAACATGGGAGCAGT 58.829 47.619 0.00 0.00 34.76 4.40
2529 3789 2.562738 GGCTAAAAACATGGGAGCAGTT 59.437 45.455 0.00 0.00 34.76 3.16
2530 3790 3.761752 GGCTAAAAACATGGGAGCAGTTA 59.238 43.478 0.00 0.00 34.76 2.24
2531 3791 4.219725 GGCTAAAAACATGGGAGCAGTTAA 59.780 41.667 0.00 0.00 34.76 2.01
2532 3792 5.279256 GGCTAAAAACATGGGAGCAGTTAAA 60.279 40.000 0.00 0.00 34.76 1.52
2533 3793 6.398095 GCTAAAAACATGGGAGCAGTTAAAT 58.602 36.000 0.00 0.00 33.26 1.40
2534 3794 6.311200 GCTAAAAACATGGGAGCAGTTAAATG 59.689 38.462 0.00 0.00 33.26 2.32
2535 3795 6.418057 AAAAACATGGGAGCAGTTAAATGA 57.582 33.333 7.18 0.00 0.00 2.57
2536 3796 5.649782 AAACATGGGAGCAGTTAAATGAG 57.350 39.130 7.18 0.00 0.00 2.90
2537 3797 4.574674 ACATGGGAGCAGTTAAATGAGA 57.425 40.909 7.18 0.00 0.00 3.27
2538 3798 4.521146 ACATGGGAGCAGTTAAATGAGAG 58.479 43.478 7.18 0.00 0.00 3.20
2539 3799 4.018960 ACATGGGAGCAGTTAAATGAGAGT 60.019 41.667 7.18 0.00 0.00 3.24
2540 3800 5.189736 ACATGGGAGCAGTTAAATGAGAGTA 59.810 40.000 7.18 0.00 0.00 2.59
2541 3801 5.344743 TGGGAGCAGTTAAATGAGAGTAG 57.655 43.478 7.18 0.00 0.00 2.57
2542 3802 4.777896 TGGGAGCAGTTAAATGAGAGTAGT 59.222 41.667 7.18 0.00 0.00 2.73
2543 3803 5.955959 TGGGAGCAGTTAAATGAGAGTAGTA 59.044 40.000 7.18 0.00 0.00 1.82
2544 3804 6.127423 TGGGAGCAGTTAAATGAGAGTAGTAC 60.127 42.308 7.18 0.00 0.00 2.73
2545 3805 5.972382 GGAGCAGTTAAATGAGAGTAGTACG 59.028 44.000 7.18 0.00 0.00 3.67
2546 3806 5.341617 AGCAGTTAAATGAGAGTAGTACGC 58.658 41.667 7.18 0.00 0.00 4.42
2547 3807 5.100259 GCAGTTAAATGAGAGTAGTACGCA 58.900 41.667 7.18 1.85 0.00 5.24
2548 3808 5.004535 GCAGTTAAATGAGAGTAGTACGCAC 59.995 44.000 7.18 0.67 0.00 5.34
2549 3809 5.227391 CAGTTAAATGAGAGTAGTACGCACG 59.773 44.000 6.81 0.00 0.00 5.34
2550 3810 2.846039 AATGAGAGTAGTACGCACGG 57.154 50.000 6.81 0.00 0.00 4.94
2551 3811 2.034104 ATGAGAGTAGTACGCACGGA 57.966 50.000 6.81 0.00 0.00 4.69
2552 3812 2.034104 TGAGAGTAGTACGCACGGAT 57.966 50.000 6.81 0.00 0.00 4.18
2553 3813 2.362736 TGAGAGTAGTACGCACGGATT 58.637 47.619 6.81 0.00 0.00 3.01
2554 3814 2.751259 TGAGAGTAGTACGCACGGATTT 59.249 45.455 6.81 0.00 0.00 2.17
2555 3815 3.192001 TGAGAGTAGTACGCACGGATTTT 59.808 43.478 6.81 0.00 0.00 1.82
2556 3816 3.508762 AGAGTAGTACGCACGGATTTTG 58.491 45.455 6.81 0.00 0.00 2.44
2557 3817 3.057033 AGAGTAGTACGCACGGATTTTGT 60.057 43.478 6.81 0.00 0.00 2.83
2558 3818 4.156556 AGAGTAGTACGCACGGATTTTGTA 59.843 41.667 6.81 0.00 0.00 2.41
2559 3819 4.808558 AGTAGTACGCACGGATTTTGTAA 58.191 39.130 0.00 0.00 0.00 2.41
2560 3820 5.229423 AGTAGTACGCACGGATTTTGTAAA 58.771 37.500 0.00 0.00 0.00 2.01
2561 3821 5.695816 AGTAGTACGCACGGATTTTGTAAAA 59.304 36.000 0.00 0.00 0.00 1.52
2562 3822 4.775664 AGTACGCACGGATTTTGTAAAAC 58.224 39.130 0.00 0.00 0.00 2.43
2563 3823 3.002708 ACGCACGGATTTTGTAAAACC 57.997 42.857 0.00 0.00 0.00 3.27
2564 3824 2.358267 ACGCACGGATTTTGTAAAACCA 59.642 40.909 0.00 0.00 0.00 3.67
2565 3825 3.004944 ACGCACGGATTTTGTAAAACCAT 59.995 39.130 0.00 0.00 0.00 3.55
2566 3826 3.984633 CGCACGGATTTTGTAAAACCATT 59.015 39.130 0.00 0.00 0.00 3.16
2567 3827 5.154932 CGCACGGATTTTGTAAAACCATTA 58.845 37.500 0.00 0.00 0.00 1.90
2568 3828 5.059955 CGCACGGATTTTGTAAAACCATTAC 59.940 40.000 0.00 0.00 0.00 1.89
2569 3829 5.921408 GCACGGATTTTGTAAAACCATTACA 59.079 36.000 0.00 0.00 33.51 2.41
2570 3830 6.588373 GCACGGATTTTGTAAAACCATTACAT 59.412 34.615 2.23 0.00 35.15 2.29
2571 3831 7.755822 GCACGGATTTTGTAAAACCATTACATA 59.244 33.333 2.23 0.00 35.15 2.29
2572 3832 9.627395 CACGGATTTTGTAAAACCATTACATAA 57.373 29.630 2.23 4.73 35.15 1.90
2573 3833 9.849166 ACGGATTTTGTAAAACCATTACATAAG 57.151 29.630 2.23 0.00 35.15 1.73
2593 3853 8.650490 ACATAAGAATTGAATTTTCCTTGTGGT 58.350 29.630 14.43 3.91 34.23 4.16
2597 3857 9.492973 AAGAATTGAATTTTCCTTGTGGTATTG 57.507 29.630 0.00 0.00 34.23 1.90
2598 3858 7.603784 AGAATTGAATTTTCCTTGTGGTATTGC 59.396 33.333 0.00 0.00 34.23 3.56
2599 3859 5.146010 TGAATTTTCCTTGTGGTATTGCC 57.854 39.130 0.00 0.00 37.90 4.52
2600 3860 4.020662 TGAATTTTCCTTGTGGTATTGCCC 60.021 41.667 0.00 0.00 36.04 5.36
2601 3861 2.685106 TTTCCTTGTGGTATTGCCCA 57.315 45.000 0.00 0.00 36.04 5.36
2602 3862 2.685106 TTCCTTGTGGTATTGCCCAA 57.315 45.000 0.00 0.00 35.92 4.12
2603 3863 2.917713 TCCTTGTGGTATTGCCCAAT 57.082 45.000 0.00 0.00 35.92 3.16
2604 3864 3.182887 TCCTTGTGGTATTGCCCAATT 57.817 42.857 0.00 0.00 35.92 2.32
2605 3865 3.096092 TCCTTGTGGTATTGCCCAATTC 58.904 45.455 0.00 0.00 35.92 2.17
2606 3866 2.168313 CCTTGTGGTATTGCCCAATTCC 59.832 50.000 9.05 9.05 38.33 3.01
2607 3867 2.917713 TGTGGTATTGCCCAATTCCT 57.082 45.000 14.92 0.00 38.56 3.36
2608 3868 3.182887 TGTGGTATTGCCCAATTCCTT 57.817 42.857 14.92 0.00 38.56 3.36
2609 3869 2.830923 TGTGGTATTGCCCAATTCCTTG 59.169 45.455 14.92 0.00 38.56 3.61
2610 3870 3.096092 GTGGTATTGCCCAATTCCTTGA 58.904 45.455 14.92 0.00 38.56 3.02
2611 3871 3.096092 TGGTATTGCCCAATTCCTTGAC 58.904 45.455 14.92 1.05 38.56 3.18
2612 3872 2.430694 GGTATTGCCCAATTCCTTGACC 59.569 50.000 8.80 2.17 35.94 4.02
2613 3873 2.629017 ATTGCCCAATTCCTTGACCT 57.371 45.000 0.00 0.00 34.04 3.85
2614 3874 1.631405 TTGCCCAATTCCTTGACCTG 58.369 50.000 0.00 0.00 34.04 4.00
2615 3875 0.251742 TGCCCAATTCCTTGACCTGG 60.252 55.000 0.00 0.00 34.04 4.45
2616 3876 1.607801 GCCCAATTCCTTGACCTGGC 61.608 60.000 0.00 0.00 34.04 4.85
2617 3877 0.040204 CCCAATTCCTTGACCTGGCT 59.960 55.000 0.00 0.00 34.04 4.75
2618 3878 1.180029 CCAATTCCTTGACCTGGCTG 58.820 55.000 0.00 0.00 34.04 4.85
2619 3879 1.180029 CAATTCCTTGACCTGGCTGG 58.820 55.000 9.11 9.11 42.93 4.85
2630 3890 2.292828 CCTGGCTGGTTATAATGGGG 57.707 55.000 1.62 0.00 0.00 4.96
2631 3891 1.780309 CCTGGCTGGTTATAATGGGGA 59.220 52.381 1.62 0.00 0.00 4.81
2632 3892 2.224867 CCTGGCTGGTTATAATGGGGAG 60.225 54.545 1.62 0.00 0.00 4.30
2633 3893 2.443255 CTGGCTGGTTATAATGGGGAGT 59.557 50.000 0.00 0.00 0.00 3.85
2634 3894 3.650942 CTGGCTGGTTATAATGGGGAGTA 59.349 47.826 0.00 0.00 0.00 2.59
2635 3895 4.247814 TGGCTGGTTATAATGGGGAGTAT 58.752 43.478 0.00 0.00 0.00 2.12
2636 3896 4.288626 TGGCTGGTTATAATGGGGAGTATC 59.711 45.833 0.00 0.00 0.00 2.24
2637 3897 4.288626 GGCTGGTTATAATGGGGAGTATCA 59.711 45.833 0.00 0.00 36.25 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.413077 GGACCGATCGGAGAAGGAAAT 59.587 52.381 39.55 14.76 43.58 2.17
24 25 0.454957 CGGAAGCAATCAAACCAGCG 60.455 55.000 0.00 0.00 0.00 5.18
125 130 2.456119 GCCGTGCAAGTCGATCCTG 61.456 63.158 0.00 0.00 0.00 3.86
178 183 2.202716 CGATCGCACTCAGCAGCT 60.203 61.111 0.26 0.00 46.13 4.24
184 189 1.143838 CCAATCCCGATCGCACTCA 59.856 57.895 10.32 0.00 0.00 3.41
263 270 6.675565 TGTTAGGGTGTATACCTGATAGTGA 58.324 40.000 8.71 0.00 46.66 3.41
267 274 7.069085 GTGTTCTGTTAGGGTGTATACCTGATA 59.931 40.741 8.71 0.00 46.66 2.15
272 279 4.223477 TGGTGTTCTGTTAGGGTGTATACC 59.777 45.833 0.00 0.00 46.76 2.73
297 304 9.547279 AGAGAAAATGGACTAAATTAAATGGGT 57.453 29.630 0.00 0.00 0.00 4.51
335 342 8.246430 AGATGCACTTTCATAATCATCCAAAT 57.754 30.769 0.00 0.00 32.92 2.32
339 351 7.976135 AGTAGATGCACTTTCATAATCATCC 57.024 36.000 0.00 0.00 32.92 3.51
362 374 7.507672 AGATGACGTACGAGAACAAAATTAG 57.492 36.000 24.41 0.00 0.00 1.73
375 387 5.741982 TGATGTACATGAAAGATGACGTACG 59.258 40.000 14.43 15.01 33.56 3.67
376 388 6.752351 ACTGATGTACATGAAAGATGACGTAC 59.248 38.462 14.43 0.00 0.00 3.67
377 389 6.863275 ACTGATGTACATGAAAGATGACGTA 58.137 36.000 14.43 0.00 0.00 3.57
378 390 5.724328 ACTGATGTACATGAAAGATGACGT 58.276 37.500 14.43 0.00 0.00 4.34
379 391 7.154668 GTACTGATGTACATGAAAGATGACG 57.845 40.000 14.43 0.00 46.06 4.35
472 646 7.359933 GCTTCTGATTTCGATGATCAGGATTAC 60.360 40.741 26.29 14.35 46.66 1.89
588 1564 8.988934 GTGCAATATCTGATTATTAGACGGAAA 58.011 33.333 0.00 0.00 0.00 3.13
654 1631 1.531149 CTGTACCTGTTGCTTGAACGG 59.469 52.381 0.00 0.00 40.27 4.44
679 1656 7.509546 ACTGTAATTATAACAGGGATGGACTG 58.490 38.462 10.76 0.00 46.97 3.51
748 1725 1.656095 CGAAGCAAATCTCTGGACGAC 59.344 52.381 0.00 0.00 0.00 4.34
749 1726 1.272490 ACGAAGCAAATCTCTGGACGA 59.728 47.619 0.00 0.00 0.00 4.20
750 1727 1.656095 GACGAAGCAAATCTCTGGACG 59.344 52.381 0.00 0.00 0.00 4.79
795 1772 2.094675 TGGGCTAGTCGTGTAGGTAAC 58.905 52.381 0.00 0.00 0.00 2.50
850 1827 1.064946 GACCTCATCGTGGAGCTCG 59.935 63.158 7.83 0.00 33.47 5.03
913 1890 0.957395 AATTCAGGTGGCGTCTGCTG 60.957 55.000 0.00 0.00 42.25 4.41
972 1950 8.158132 AGGGAGACGACATCACGATATATATAT 58.842 37.037 4.86 4.86 37.03 0.86
973 1951 7.506971 AGGGAGACGACATCACGATATATATA 58.493 38.462 0.00 0.00 37.03 0.86
974 1952 6.358178 AGGGAGACGACATCACGATATATAT 58.642 40.000 0.00 0.00 37.03 0.86
975 1953 5.742063 AGGGAGACGACATCACGATATATA 58.258 41.667 0.00 0.00 37.03 0.86
976 1954 4.590918 AGGGAGACGACATCACGATATAT 58.409 43.478 0.00 0.00 37.03 0.86
977 1955 4.001652 GAGGGAGACGACATCACGATATA 58.998 47.826 0.00 0.00 37.03 0.86
978 1956 2.814919 GAGGGAGACGACATCACGATAT 59.185 50.000 0.00 0.00 37.03 1.63
979 1957 2.219458 GAGGGAGACGACATCACGATA 58.781 52.381 0.00 0.00 37.03 2.92
980 1958 1.025812 GAGGGAGACGACATCACGAT 58.974 55.000 0.00 0.00 37.03 3.73
981 1959 1.030488 GGAGGGAGACGACATCACGA 61.030 60.000 0.00 0.00 37.03 4.35
982 1960 1.313091 TGGAGGGAGACGACATCACG 61.313 60.000 0.00 0.00 39.31 4.35
983 1961 0.173708 GTGGAGGGAGACGACATCAC 59.826 60.000 0.00 0.00 0.00 3.06
984 1962 1.313091 CGTGGAGGGAGACGACATCA 61.313 60.000 0.00 0.00 37.81 3.07
985 1963 1.313812 ACGTGGAGGGAGACGACATC 61.314 60.000 0.00 0.00 38.94 3.06
988 1966 1.212229 GAACGTGGAGGGAGACGAC 59.788 63.158 0.00 0.00 38.94 4.34
1066 2044 2.124778 GCTGGGAGAGAGCTTGCC 60.125 66.667 0.00 0.00 33.37 4.52
1136 2117 3.952811 GACTTGCAGGTGTCGTCC 58.047 61.111 6.05 0.00 0.00 4.79
1154 2135 1.352156 CCTTGTTACTCGCGCTGACC 61.352 60.000 5.56 0.00 0.00 4.02
1166 2147 0.168788 CGTAGCCGACGTCCTTGTTA 59.831 55.000 10.58 0.00 46.86 2.41
1307 2288 1.672881 CCTTTCGATGCCTTGATGGTC 59.327 52.381 0.00 0.00 38.35 4.02
1323 2304 1.555533 GATCCTCTTGTCGTCCCCTTT 59.444 52.381 0.00 0.00 0.00 3.11
1656 2912 3.628032 TGTGTGCCGTTTTCTTAATGACA 59.372 39.130 0.00 0.00 0.00 3.58
1692 2948 1.766494 TTCGCTTTGATGGCCATGAT 58.234 45.000 26.56 0.00 0.00 2.45
1693 2949 1.406180 CATTCGCTTTGATGGCCATGA 59.594 47.619 26.56 13.45 0.00 3.07
1694 2950 1.847818 CATTCGCTTTGATGGCCATG 58.152 50.000 26.56 10.02 0.00 3.66
1695 2951 0.103572 GCATTCGCTTTGATGGCCAT 59.896 50.000 20.96 20.96 34.30 4.40
1718 2974 2.162008 TGATGCACGATGGTTGTTCATG 59.838 45.455 0.00 0.00 0.00 3.07
1719 2975 2.435422 TGATGCACGATGGTTGTTCAT 58.565 42.857 0.00 0.00 0.00 2.57
1720 2976 1.889545 TGATGCACGATGGTTGTTCA 58.110 45.000 0.00 0.00 0.00 3.18
1721 2977 2.987413 TTGATGCACGATGGTTGTTC 57.013 45.000 0.00 0.00 0.00 3.18
1726 2982 2.557924 ACAAACATTGATGCACGATGGT 59.442 40.909 16.18 9.99 41.64 3.55
1754 3010 0.249784 CATGCCGTCAGATCTCCTGG 60.250 60.000 0.00 0.00 43.12 4.45
1822 3078 1.167851 TGCACTTATCTGGCAAGCAC 58.832 50.000 0.00 0.00 34.05 4.40
1930 3186 5.240121 TGACTAAACAAAAGGATACCGACC 58.760 41.667 0.00 0.00 37.17 4.79
1932 3188 8.479689 TGATATGACTAAACAAAAGGATACCGA 58.520 33.333 0.00 0.00 37.17 4.69
1974 3230 2.425578 TCATGACGTTTCGCTGTACA 57.574 45.000 0.00 0.00 0.00 2.90
1991 3247 4.976224 CAGATTTGTTCTGCATCCATCA 57.024 40.909 0.00 0.00 45.16 3.07
2016 3276 2.882927 TCATGTGCTACCGGTATCAC 57.117 50.000 32.11 32.11 33.98 3.06
2155 3415 2.166130 TTGACGCCTCAATCCGCTCA 62.166 55.000 0.00 0.00 31.00 4.26
2157 3417 1.003839 TTTGACGCCTCAATCCGCT 60.004 52.632 0.00 0.00 36.26 5.52
2164 3424 1.073025 ATGCTGGTTTGACGCCTCA 59.927 52.632 0.00 0.00 0.00 3.86
2171 3431 4.403137 GCGCGCATGCTGGTTTGA 62.403 61.111 29.10 0.00 39.65 2.69
2263 3523 1.583556 TCATGAGGCCCACACAGTAT 58.416 50.000 0.00 0.00 0.00 2.12
2276 3536 8.859156 CGGTAACATTTGGTTAAAAATCATGAG 58.141 33.333 0.09 0.00 43.30 2.90
2286 3546 5.404968 CGAGTACACGGTAACATTTGGTTAA 59.595 40.000 4.65 0.00 43.30 2.01
2287 3547 4.922692 CGAGTACACGGTAACATTTGGTTA 59.077 41.667 4.65 0.00 40.96 2.85
2309 3569 9.537848 AAACGTCTTATATTTCTTTACAAAGCG 57.462 29.630 0.00 0.00 35.99 4.68
2383 3643 9.253832 CTCTGTAGAGAAATATATGACCTCCAT 57.746 37.037 2.72 0.00 44.74 3.41
2384 3644 7.177568 GCTCTGTAGAGAAATATATGACCTCCA 59.822 40.741 12.89 0.00 44.74 3.86
2385 3645 7.177568 TGCTCTGTAGAGAAATATATGACCTCC 59.822 40.741 12.89 0.00 44.74 4.30
2386 3646 8.116651 TGCTCTGTAGAGAAATATATGACCTC 57.883 38.462 12.89 0.00 44.74 3.85
2387 3647 8.484214 TTGCTCTGTAGAGAAATATATGACCT 57.516 34.615 12.89 0.00 44.74 3.85
2388 3648 8.364142 ACTTGCTCTGTAGAGAAATATATGACC 58.636 37.037 12.89 0.00 44.74 4.02
2389 3649 9.757227 AACTTGCTCTGTAGAGAAATATATGAC 57.243 33.333 12.89 0.00 44.74 3.06
2394 3654 9.944376 TTACAAACTTGCTCTGTAGAGAAATAT 57.056 29.630 12.89 0.00 44.74 1.28
2395 3655 9.424319 CTTACAAACTTGCTCTGTAGAGAAATA 57.576 33.333 12.89 0.00 44.74 1.40
2396 3656 7.934120 ACTTACAAACTTGCTCTGTAGAGAAAT 59.066 33.333 12.89 0.00 44.74 2.17
2397 3657 7.272978 ACTTACAAACTTGCTCTGTAGAGAAA 58.727 34.615 12.89 7.56 44.74 2.52
2398 3658 6.817184 ACTTACAAACTTGCTCTGTAGAGAA 58.183 36.000 12.89 0.00 44.74 2.87
2399 3659 6.406692 ACTTACAAACTTGCTCTGTAGAGA 57.593 37.500 12.89 0.00 44.74 3.10
2400 3660 7.484035 AAACTTACAAACTTGCTCTGTAGAG 57.516 36.000 4.53 4.53 44.75 2.43
2401 3661 8.951787 TTAAACTTACAAACTTGCTCTGTAGA 57.048 30.769 0.00 0.00 0.00 2.59
2404 3664 8.903820 AGATTTAAACTTACAAACTTGCTCTGT 58.096 29.630 0.00 0.00 0.00 3.41
2409 3669 9.274065 CGGATAGATTTAAACTTACAAACTTGC 57.726 33.333 0.00 0.00 0.00 4.01
2420 3680 9.826574 TGCTACAATTACGGATAGATTTAAACT 57.173 29.630 0.00 0.00 0.00 2.66
2423 3683 9.990360 TCATGCTACAATTACGGATAGATTTAA 57.010 29.630 0.00 0.00 0.00 1.52
2424 3684 9.639601 CTCATGCTACAATTACGGATAGATTTA 57.360 33.333 0.00 0.00 0.00 1.40
2425 3685 7.118390 GCTCATGCTACAATTACGGATAGATTT 59.882 37.037 0.00 0.00 36.03 2.17
2426 3686 6.591834 GCTCATGCTACAATTACGGATAGATT 59.408 38.462 0.00 0.00 36.03 2.40
2427 3687 6.102663 GCTCATGCTACAATTACGGATAGAT 58.897 40.000 0.00 0.00 36.03 1.98
2428 3688 5.010617 TGCTCATGCTACAATTACGGATAGA 59.989 40.000 0.00 0.00 40.48 1.98
2429 3689 5.230182 TGCTCATGCTACAATTACGGATAG 58.770 41.667 0.00 0.00 40.48 2.08
2430 3690 5.208463 TGCTCATGCTACAATTACGGATA 57.792 39.130 0.00 0.00 40.48 2.59
2431 3691 4.071961 TGCTCATGCTACAATTACGGAT 57.928 40.909 0.00 0.00 40.48 4.18
2432 3692 3.535280 TGCTCATGCTACAATTACGGA 57.465 42.857 0.00 0.00 40.48 4.69
2433 3693 3.002656 CCTTGCTCATGCTACAATTACGG 59.997 47.826 0.00 0.00 40.48 4.02
2434 3694 3.546815 GCCTTGCTCATGCTACAATTACG 60.547 47.826 0.00 0.00 40.48 3.18
2435 3695 3.629398 AGCCTTGCTCATGCTACAATTAC 59.371 43.478 0.00 0.00 40.48 1.89
2436 3696 3.889815 AGCCTTGCTCATGCTACAATTA 58.110 40.909 0.00 0.00 40.48 1.40
2437 3697 2.731572 AGCCTTGCTCATGCTACAATT 58.268 42.857 0.00 0.00 40.48 2.32
2438 3698 2.431954 AGCCTTGCTCATGCTACAAT 57.568 45.000 0.00 0.00 40.48 2.71
2439 3699 3.565764 ATAGCCTTGCTCATGCTACAA 57.434 42.857 0.00 0.00 40.14 2.41
2440 3700 3.565764 AATAGCCTTGCTCATGCTACA 57.434 42.857 0.00 0.00 40.14 2.74
2441 3701 7.335422 ACATATAAATAGCCTTGCTCATGCTAC 59.665 37.037 0.00 0.00 40.14 3.58
2442 3702 7.397221 ACATATAAATAGCCTTGCTCATGCTA 58.603 34.615 0.00 0.00 40.44 3.49
2443 3703 6.243900 ACATATAAATAGCCTTGCTCATGCT 58.756 36.000 0.00 0.00 40.44 3.79
2444 3704 6.506500 ACATATAAATAGCCTTGCTCATGC 57.493 37.500 0.00 0.00 40.44 4.06
2445 3705 8.552083 TGTACATATAAATAGCCTTGCTCATG 57.448 34.615 0.00 0.00 40.44 3.07
2446 3706 7.826252 CCTGTACATATAAATAGCCTTGCTCAT 59.174 37.037 0.00 0.00 40.44 2.90
2447 3707 7.161404 CCTGTACATATAAATAGCCTTGCTCA 58.839 38.462 0.00 0.00 40.44 4.26
2448 3708 7.162082 ACCTGTACATATAAATAGCCTTGCTC 58.838 38.462 0.00 0.00 40.44 4.26
2449 3709 7.079451 ACCTGTACATATAAATAGCCTTGCT 57.921 36.000 0.00 0.00 43.41 3.91
2450 3710 7.661847 AGAACCTGTACATATAAATAGCCTTGC 59.338 37.037 0.00 0.00 0.00 4.01
2453 3713 9.375974 TGTAGAACCTGTACATATAAATAGCCT 57.624 33.333 0.00 0.00 0.00 4.58
2454 3714 9.991906 TTGTAGAACCTGTACATATAAATAGCC 57.008 33.333 0.00 0.00 30.54 3.93
2464 3724 9.269453 GTAGAAGTTTTTGTAGAACCTGTACAT 57.731 33.333 0.00 0.00 30.54 2.29
2465 3725 7.436080 CGTAGAAGTTTTTGTAGAACCTGTACA 59.564 37.037 0.00 0.00 0.00 2.90
2466 3726 7.568315 GCGTAGAAGTTTTTGTAGAACCTGTAC 60.568 40.741 0.00 0.00 0.00 2.90
2467 3727 6.421801 GCGTAGAAGTTTTTGTAGAACCTGTA 59.578 38.462 0.00 0.00 0.00 2.74
2468 3728 5.235831 GCGTAGAAGTTTTTGTAGAACCTGT 59.764 40.000 0.00 0.00 0.00 4.00
2469 3729 5.235616 TGCGTAGAAGTTTTTGTAGAACCTG 59.764 40.000 0.00 0.00 0.00 4.00
2470 3730 5.235831 GTGCGTAGAAGTTTTTGTAGAACCT 59.764 40.000 0.00 0.00 0.00 3.50
2471 3731 5.235831 AGTGCGTAGAAGTTTTTGTAGAACC 59.764 40.000 0.00 0.00 0.00 3.62
2472 3732 6.283161 AGTGCGTAGAAGTTTTTGTAGAAC 57.717 37.500 0.00 0.00 0.00 3.01
2473 3733 7.205297 ACTAGTGCGTAGAAGTTTTTGTAGAA 58.795 34.615 0.00 0.00 32.41 2.10
2474 3734 6.742109 ACTAGTGCGTAGAAGTTTTTGTAGA 58.258 36.000 0.00 0.00 32.41 2.59
2475 3735 7.168637 TGAACTAGTGCGTAGAAGTTTTTGTAG 59.831 37.037 0.00 0.00 32.51 2.74
2476 3736 6.979817 TGAACTAGTGCGTAGAAGTTTTTGTA 59.020 34.615 0.00 0.00 32.51 2.41
2477 3737 5.813672 TGAACTAGTGCGTAGAAGTTTTTGT 59.186 36.000 0.00 0.00 32.51 2.83
2478 3738 6.281848 TGAACTAGTGCGTAGAAGTTTTTG 57.718 37.500 0.00 0.00 32.51 2.44
2479 3739 7.352739 CAATGAACTAGTGCGTAGAAGTTTTT 58.647 34.615 0.00 0.00 32.51 1.94
2480 3740 6.073222 CCAATGAACTAGTGCGTAGAAGTTTT 60.073 38.462 0.00 0.00 32.51 2.43
2481 3741 5.408604 CCAATGAACTAGTGCGTAGAAGTTT 59.591 40.000 0.00 0.00 32.51 2.66
2482 3742 4.929808 CCAATGAACTAGTGCGTAGAAGTT 59.070 41.667 0.00 0.83 34.96 2.66
2483 3743 4.021368 ACCAATGAACTAGTGCGTAGAAGT 60.021 41.667 0.00 0.00 32.41 3.01
2484 3744 4.495422 ACCAATGAACTAGTGCGTAGAAG 58.505 43.478 0.00 0.00 32.41 2.85
2485 3745 4.530710 ACCAATGAACTAGTGCGTAGAA 57.469 40.909 0.00 0.00 32.41 2.10
2486 3746 4.242475 CAACCAATGAACTAGTGCGTAGA 58.758 43.478 0.00 0.00 32.41 2.59
2487 3747 3.370978 CCAACCAATGAACTAGTGCGTAG 59.629 47.826 0.00 0.00 34.52 3.51
2488 3748 3.331150 CCAACCAATGAACTAGTGCGTA 58.669 45.455 0.00 0.00 0.00 4.42
2489 3749 2.151202 CCAACCAATGAACTAGTGCGT 58.849 47.619 0.00 0.00 0.00 5.24
2490 3750 1.135689 GCCAACCAATGAACTAGTGCG 60.136 52.381 0.00 0.00 0.00 5.34
2491 3751 2.162681 AGCCAACCAATGAACTAGTGC 58.837 47.619 0.00 0.00 0.00 4.40
2492 3752 5.957842 TTTAGCCAACCAATGAACTAGTG 57.042 39.130 0.00 0.00 0.00 2.74
2493 3753 6.322712 TGTTTTTAGCCAACCAATGAACTAGT 59.677 34.615 0.00 0.00 0.00 2.57
2494 3754 6.744112 TGTTTTTAGCCAACCAATGAACTAG 58.256 36.000 0.00 0.00 0.00 2.57
2495 3755 6.716934 TGTTTTTAGCCAACCAATGAACTA 57.283 33.333 0.00 0.00 0.00 2.24
2496 3756 5.606348 TGTTTTTAGCCAACCAATGAACT 57.394 34.783 0.00 0.00 0.00 3.01
2497 3757 5.179182 CCATGTTTTTAGCCAACCAATGAAC 59.821 40.000 0.00 0.00 0.00 3.18
2498 3758 5.303971 CCATGTTTTTAGCCAACCAATGAA 58.696 37.500 0.00 0.00 0.00 2.57
2499 3759 4.262808 CCCATGTTTTTAGCCAACCAATGA 60.263 41.667 0.00 0.00 0.00 2.57
2500 3760 4.002316 CCCATGTTTTTAGCCAACCAATG 58.998 43.478 0.00 0.00 0.00 2.82
2501 3761 3.906846 TCCCATGTTTTTAGCCAACCAAT 59.093 39.130 0.00 0.00 0.00 3.16
2502 3762 3.309296 TCCCATGTTTTTAGCCAACCAA 58.691 40.909 0.00 0.00 0.00 3.67
2503 3763 2.896685 CTCCCATGTTTTTAGCCAACCA 59.103 45.455 0.00 0.00 0.00 3.67
2504 3764 2.353704 GCTCCCATGTTTTTAGCCAACC 60.354 50.000 0.00 0.00 0.00 3.77
2505 3765 2.298729 TGCTCCCATGTTTTTAGCCAAC 59.701 45.455 0.00 0.00 32.14 3.77
2506 3766 2.562298 CTGCTCCCATGTTTTTAGCCAA 59.438 45.455 0.00 0.00 32.14 4.52
2507 3767 2.170166 CTGCTCCCATGTTTTTAGCCA 58.830 47.619 0.00 0.00 32.14 4.75
2508 3768 2.171003 ACTGCTCCCATGTTTTTAGCC 58.829 47.619 0.00 0.00 32.14 3.93
2509 3769 3.942130 AACTGCTCCCATGTTTTTAGC 57.058 42.857 0.00 0.00 0.00 3.09
2510 3770 7.601856 TCATTTAACTGCTCCCATGTTTTTAG 58.398 34.615 0.00 0.00 0.00 1.85
2511 3771 7.450014 TCTCATTTAACTGCTCCCATGTTTTTA 59.550 33.333 0.00 0.00 0.00 1.52
2512 3772 6.267471 TCTCATTTAACTGCTCCCATGTTTTT 59.733 34.615 0.00 0.00 0.00 1.94
2513 3773 5.774690 TCTCATTTAACTGCTCCCATGTTTT 59.225 36.000 0.00 0.00 0.00 2.43
2514 3774 5.324409 TCTCATTTAACTGCTCCCATGTTT 58.676 37.500 0.00 0.00 0.00 2.83
2515 3775 4.922206 TCTCATTTAACTGCTCCCATGTT 58.078 39.130 0.00 0.00 0.00 2.71
2516 3776 4.018960 ACTCTCATTTAACTGCTCCCATGT 60.019 41.667 0.00 0.00 0.00 3.21
2517 3777 4.521146 ACTCTCATTTAACTGCTCCCATG 58.479 43.478 0.00 0.00 0.00 3.66
2518 3778 4.851639 ACTCTCATTTAACTGCTCCCAT 57.148 40.909 0.00 0.00 0.00 4.00
2519 3779 4.777896 ACTACTCTCATTTAACTGCTCCCA 59.222 41.667 0.00 0.00 0.00 4.37
2520 3780 5.346181 ACTACTCTCATTTAACTGCTCCC 57.654 43.478 0.00 0.00 0.00 4.30
2521 3781 5.972382 CGTACTACTCTCATTTAACTGCTCC 59.028 44.000 0.00 0.00 0.00 4.70
2522 3782 5.456173 GCGTACTACTCTCATTTAACTGCTC 59.544 44.000 0.00 0.00 0.00 4.26
2523 3783 5.105877 TGCGTACTACTCTCATTTAACTGCT 60.106 40.000 0.00 0.00 0.00 4.24
2524 3784 5.004535 GTGCGTACTACTCTCATTTAACTGC 59.995 44.000 0.00 0.00 0.00 4.40
2525 3785 5.227391 CGTGCGTACTACTCTCATTTAACTG 59.773 44.000 1.24 0.00 0.00 3.16
2526 3786 5.330295 CGTGCGTACTACTCTCATTTAACT 58.670 41.667 1.24 0.00 0.00 2.24
2527 3787 4.498323 CCGTGCGTACTACTCTCATTTAAC 59.502 45.833 1.24 0.00 0.00 2.01
2528 3788 4.395854 TCCGTGCGTACTACTCTCATTTAA 59.604 41.667 1.24 0.00 0.00 1.52
2529 3789 3.940852 TCCGTGCGTACTACTCTCATTTA 59.059 43.478 1.24 0.00 0.00 1.40
2530 3790 2.751259 TCCGTGCGTACTACTCTCATTT 59.249 45.455 1.24 0.00 0.00 2.32
2531 3791 2.362736 TCCGTGCGTACTACTCTCATT 58.637 47.619 1.24 0.00 0.00 2.57
2532 3792 2.034104 TCCGTGCGTACTACTCTCAT 57.966 50.000 1.24 0.00 0.00 2.90
2533 3793 2.034104 ATCCGTGCGTACTACTCTCA 57.966 50.000 1.24 0.00 0.00 3.27
2534 3794 3.417690 AAATCCGTGCGTACTACTCTC 57.582 47.619 1.24 0.00 0.00 3.20
2535 3795 3.057033 ACAAAATCCGTGCGTACTACTCT 60.057 43.478 1.24 0.00 0.00 3.24
2536 3796 3.248266 ACAAAATCCGTGCGTACTACTC 58.752 45.455 1.24 0.00 0.00 2.59
2537 3797 3.308438 ACAAAATCCGTGCGTACTACT 57.692 42.857 1.24 0.00 0.00 2.57
2538 3798 5.514059 TTTACAAAATCCGTGCGTACTAC 57.486 39.130 1.24 0.00 0.00 2.73
2539 3799 5.107143 GGTTTTACAAAATCCGTGCGTACTA 60.107 40.000 1.24 0.00 0.00 1.82
2540 3800 4.319694 GGTTTTACAAAATCCGTGCGTACT 60.320 41.667 1.24 0.00 0.00 2.73
2541 3801 3.907788 GGTTTTACAAAATCCGTGCGTAC 59.092 43.478 0.00 0.00 0.00 3.67
2542 3802 3.562973 TGGTTTTACAAAATCCGTGCGTA 59.437 39.130 0.00 0.00 0.00 4.42
2543 3803 2.358267 TGGTTTTACAAAATCCGTGCGT 59.642 40.909 0.00 0.00 0.00 5.24
2544 3804 3.001395 TGGTTTTACAAAATCCGTGCG 57.999 42.857 0.00 0.00 0.00 5.34
2545 3805 5.921408 TGTAATGGTTTTACAAAATCCGTGC 59.079 36.000 0.00 0.00 32.53 5.34
2546 3806 9.627395 TTATGTAATGGTTTTACAAAATCCGTG 57.373 29.630 2.64 0.00 38.26 4.94
2547 3807 9.849166 CTTATGTAATGGTTTTACAAAATCCGT 57.151 29.630 2.64 0.00 38.26 4.69
2567 3827 8.650490 ACCACAAGGAAAATTCAATTCTTATGT 58.350 29.630 0.00 0.00 38.69 2.29
2571 3831 9.492973 CAATACCACAAGGAAAATTCAATTCTT 57.507 29.630 0.00 0.00 38.69 2.52
2572 3832 7.603784 GCAATACCACAAGGAAAATTCAATTCT 59.396 33.333 0.00 0.00 38.69 2.40
2573 3833 7.148423 GGCAATACCACAAGGAAAATTCAATTC 60.148 37.037 0.00 0.00 38.86 2.17
2574 3834 6.654582 GGCAATACCACAAGGAAAATTCAATT 59.345 34.615 0.00 0.00 38.86 2.32
2575 3835 6.172630 GGCAATACCACAAGGAAAATTCAAT 58.827 36.000 0.00 0.00 38.86 2.57
2576 3836 5.512232 GGGCAATACCACAAGGAAAATTCAA 60.512 40.000 0.00 0.00 42.05 2.69
2577 3837 4.020662 GGGCAATACCACAAGGAAAATTCA 60.021 41.667 0.00 0.00 42.05 2.57
2578 3838 4.020662 TGGGCAATACCACAAGGAAAATTC 60.021 41.667 0.00 0.00 42.05 2.17
2579 3839 3.906846 TGGGCAATACCACAAGGAAAATT 59.093 39.130 0.00 0.00 42.05 1.82
2580 3840 3.515562 TGGGCAATACCACAAGGAAAAT 58.484 40.909 0.00 0.00 42.05 1.82
2581 3841 2.964209 TGGGCAATACCACAAGGAAAA 58.036 42.857 0.00 0.00 42.05 2.29
2582 3842 2.685106 TGGGCAATACCACAAGGAAA 57.315 45.000 0.00 0.00 42.05 3.13
2583 3843 2.685106 TTGGGCAATACCACAAGGAA 57.315 45.000 0.00 0.00 41.03 3.36
2584 3844 2.917713 ATTGGGCAATACCACAAGGA 57.082 45.000 0.00 0.00 41.03 3.36
2585 3845 2.168313 GGAATTGGGCAATACCACAAGG 59.832 50.000 0.00 0.00 41.03 3.61
2586 3846 3.099141 AGGAATTGGGCAATACCACAAG 58.901 45.455 0.00 0.00 41.03 3.16
2587 3847 3.182887 AGGAATTGGGCAATACCACAA 57.817 42.857 0.00 0.00 41.03 3.33
2588 3848 2.830923 CAAGGAATTGGGCAATACCACA 59.169 45.455 0.00 0.00 41.03 4.17
2589 3849 3.096092 TCAAGGAATTGGGCAATACCAC 58.904 45.455 0.00 0.00 41.03 4.16
2590 3850 3.096092 GTCAAGGAATTGGGCAATACCA 58.904 45.455 0.00 0.00 42.05 3.25
2591 3851 2.430694 GGTCAAGGAATTGGGCAATACC 59.569 50.000 0.00 0.00 37.93 2.73
2592 3852 3.131046 CAGGTCAAGGAATTGGGCAATAC 59.869 47.826 0.00 0.00 0.00 1.89
2593 3853 3.364549 CAGGTCAAGGAATTGGGCAATA 58.635 45.455 0.00 0.00 0.00 1.90
2594 3854 2.181975 CAGGTCAAGGAATTGGGCAAT 58.818 47.619 0.00 0.00 0.00 3.56
2595 3855 1.631405 CAGGTCAAGGAATTGGGCAA 58.369 50.000 0.00 0.00 0.00 4.52
2596 3856 0.251742 CCAGGTCAAGGAATTGGGCA 60.252 55.000 0.00 0.00 0.00 5.36
2597 3857 1.607801 GCCAGGTCAAGGAATTGGGC 61.608 60.000 0.00 0.00 0.00 5.36
2598 3858 0.040204 AGCCAGGTCAAGGAATTGGG 59.960 55.000 0.00 0.00 0.00 4.12
2599 3859 1.180029 CAGCCAGGTCAAGGAATTGG 58.820 55.000 0.00 0.00 0.00 3.16
2600 3860 1.180029 CCAGCCAGGTCAAGGAATTG 58.820 55.000 0.00 0.00 0.00 2.32
2601 3861 3.677963 CCAGCCAGGTCAAGGAATT 57.322 52.632 0.00 0.00 0.00 2.17
2611 3871 1.780309 TCCCCATTATAACCAGCCAGG 59.220 52.381 0.00 0.00 45.67 4.45
2612 3872 2.443255 ACTCCCCATTATAACCAGCCAG 59.557 50.000 0.00 0.00 0.00 4.85
2613 3873 2.498441 ACTCCCCATTATAACCAGCCA 58.502 47.619 0.00 0.00 0.00 4.75
2614 3874 4.288626 TGATACTCCCCATTATAACCAGCC 59.711 45.833 0.00 0.00 0.00 4.85
2615 3875 5.499004 TGATACTCCCCATTATAACCAGC 57.501 43.478 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.