>input_sequence_73270
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---------------------------------------------------------CACGTTCAAAAGACAAAACGTCT
GACACAACCACCACTAAAACCAGCGCAAAGATGATGAGGCCTTGGCAAGCTCTCTCCCAGCTCGCCG---TCCTCCTCCT
CTTCCTCCTCGTCTCGTCCAGCGCCGTCTCCACTCTGGACGACACCTGCAAGTCGGTCAGCGCGAGTAACAAGGACGTCG
GCTACGACTACTGCGTCAAGTTCTTCCAGGCGTGCAAGGGCAGCGCCACCGCGGACAAGCGCGGCCTGGCCGTCATCGCC
ACGAAGATCATCCGAGCGGCGGCCGTGAGCACCGGCAGGCGCATCGCGACCATCAAGGCATCGAAAGGGGACGACAAGAG
GATCCAGGGGCCGCTCGCCGACTGCGACGAGCTGTACTCGAGCGCCGTGGACCAGCTCGACGCGGCGGCGAGGGGCATCT
CGTCGGGGAAGTTGCAGGACGCCCTGACGAACCTCAGCGCCGCTGCGGACGCGCCACAGACCTGCGAGGAAGGGTTTCGC
GAGCTGGGCGTGAGTTCGCCGCTGGCCGACGAGGACTCCAAGTTCAGTAAGGAGTGCTCCATCGCTCTCGCTGTAACGAA
CACGTTGTAAGCGACAA-AGTCTATAA-TCATTTGGATCA------------AAT---ATAATCCTGTATGGATC-----
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>chr2B_1_TraesCS2B01G474200
GGTCATTTCCTTCTCCGATCGGTCCGCTGGTTTGATTGCTTCCGATCGATCGCTATCTGACGAGCGGCCAAGTCCATCAG
CCAGGAGGCGGCCGCACGGCACCTAGCGGCGCAACGCCAAGCAGT----CAGGATCGACTTGCACGGCAGCGGCGCCAAC
GCTCAGGCAATGAGGCAAGTCAAGCTGCTGAGTGCGATCGGGATTGGGGCATGACCGTGACACGCCATCTCGTCACGAAT
TTACCATCAGGTTTTTCCTC--AAAAAATTCACTATCAGGTATACACCCTAACAGAACACCAAACCCATTTAATTTAGTC
CATTTTCTCTATCAAATACGTATT-----TGGATGATTATGAAAGTGCATCTACTAATTTTGTTCTCGTACGTCATCTTT
CATGT---------------------------------------------------------------------------
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-------ACATCAGTACATGTGCATTATAGTTCAACTTTTGCATACTTCCAACCCACGTCATCTGCAGACCGGCCGGGTT
AGACGGTAATCCTGATCATCGAAATCAGAAGCTGCAAAAGAGATAAAGATA-----------------------------
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-----------------------------------------------------ATAGGTTTTAACTCAATTTCAGAAGGA
AAAAAAAAGCTAGGTAGTGGTTTATATTATAAAACAACCATAATTTCCGTCTAATAATCAGATATTGCACTTGATGTTAA
TGTTGCAGTTAAGATTTTGAAGACATT-ACCCGTTCAAGCAACAGGTACAGTACTCAGTCCATCCCTGTTATAATTACAG
TACAGTTACATTGTTATTACTCTTAGCACTTAAATTTGAGCTTTGTCGTCCAGAGATTTGCTTCGTCCTCCTCCATCTAA
TCAGTTATTCAGTTACCTACACGACTAGCCCAGCCGGCGTAGCAGCAGCGCCGGAGTCGCAGTCACCGAGCTCCACGATG
AGGTCCACGCCCCCGGCGTCTACAGTTAATCATACCCGAATTTCCCATCCAGCAGACGCCACCTGAATTTCATTTCCTAG
-AGGATCCTCCCTACGTCTCTCTCTCTATATATATATATCGTGATGTCGTCTCCCTCCACGTTCAAAAGACAAAACGTCT
GACACAACCACCACTAAAACCAGCGCAAAGATGATGAGGCCTTGGCAAGCTCTCTCCCAGCTCGCCG---TCCTCCTCCT
CTTCCTCCTCGTCTCGTCCAGCGCCGTCTCCACTCTGGACGACACCTGCAAGTCGGTCAGCGCGAGTAACAAGGACGTCG
GCTACGACTACTGCGTCAAGTTCTTCCAGGCGTGCAAGGGCAGCGCCACCGCGGACAAGCGCGGCCTGGCCGTCATCGCC
ACGAAGATCATCCGAGCGGCGGCCGTGAGCACCGGCAGGCGCATCGCGACCATCAAGGCATCGAAAGGGGACGACAAGAG
GATCCAGGGGCCGCTCGCCGACTGCGACGAGCTGTACTCGAGCGCCGTGGACCAGCTCGACGCGGCGGCGAGGGGCATCT
CGTCGGGGAAGTTGCAGGACGCCCTGACGAACCTCAGCGCCGCTGCGGACGCGCCACAGACCTGCGAGGAAGGGTTTCGC
GAGCTGGGCGTGAGTTCGCCGCTGGCCGACGAGGACTCCAAGTTCAGTAAGGAGTGCTCCATCGCTCTCGCTGTAACGAA
CACGTTGTAAGCGACAA-AGTCTATAA-TCATTTGGATCA------------AAT---ATAATCCTGTATGGATCGTGGT
GAAC----------------------------------------------------------------------------
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----------------------TGACATAGCTGTCATTAAGAAAACGGCACACAATTTGCGGACGATATCATGGCCATCA
AAGCGAATGCATGCATGAACAACCATCGTGCATCAATGTTTGTCAATGTCCAGGAGATCTGACGGCATGGGATGAGATGC
CCATGCGCGGCACGCTAACGAATTTTGTACGCAAGAGGTGCTTGCCAGATAAGTGCAAGATTATATTATTGTTGCCATTT
GTTGATTAGCAAGGCAATAAAATACGCCCACACGTATTAGTTGCCACATACATCAAAATAGCGGAGGTCGGTATCCTTTT
GTTTAGTCATATCATTTTCAAGTGTTTTATGTACAGCGAAACGTCATG----ATGGATGCAGAACAAATCTGATAGTGAT
ACCGGTAGCACATGATGGATGCATGGGTCATGCTGTGTCCGGCGGCGGCGCCGAAGCCTGCAGGTGGCGCCAGCCTCACC
GCGGGTAAGGTCCAGCCACGAAGGTCATGTCCAGTCAGGCAGTCAGCGTCGTCGTGAGCGGATTGAGGCGTCAAACCAGC
ATGCGCGCGCGAACGTTTCGAGTCGAAGGTGCAAACTTCACAAAAATTGGCTATAATTTTAAGCTTACGATAATCCTAAA
TTATACTGTGTGGGCCTCATGATTTTTAACCAAATGTTACCGTGTACTCGCTTTGTAAAGAAATATAAGACGTTTTAAAT
CACTACTACTTTTTAGTGATCTAAAATGTCTTATATTTATTTATGGAGGTCATATATTTCTCTACAGAGCAAGTTTGTAA
GTTTAAATCTATCCGTAATTGTAGCATGAGCAAGGCTATTTATATGTACAGGTTCTACAAAAACTTCTACGCACTAGTTC
ATTGGTTGGCTAAAAACATGGGAGCAGTTAAATGAGAGTAGTACGCACGGATTTTGTAAAACCATTACATAAGAATTGAA
TTTTCCTTGTGGTATTGCCCAATTCCTTGACCTGGCTGGTTATAATGGGGAGTATCA
>chr2A_1
GGTCGTTTCCTTCTCCGATCGGTCGGCTGGTTTGATTGCTTCCGATCGATCGCTATCTGACGAGCAGCCAAGTCCAGCAG
CCAGGAGACGGCCGCACGGCAGCTAACGGCGCAACGC------GT----AAGGATCGACCTGCACGGCAGCGGCGCCAAC
GCTCAGGCAATGAGGCAAGTCAGTCTGC-GAGTGCGATCGGGATTGGGGCATGACCGTGACACGCCATCTCGTCACGAAT
TCACCATCAGGTTTTCCCTC--AAAAAAT-CACCATCACGTATACACCCTAACAGAACACCAAGCCCATTTAATTTACTC
CATTTTCCTTTAACGGATACATACGCATGTCGATGATTATGAACGTGCATCTATTAATTTTGTTCTT----GTCATCTTT
CATGTACTCCCTCCGTTCCTAAATATTTGTTTTTATAGAGGTTTTAAATGGTGACTACATATGGAGTAAAATGAGTGAAT
CTACACTCTAAAATATGTCTATATACATCCGTATGTAGTGACCATTTGAAATCTCTAGAAAGACAAATATTTAGGAACGG
AGGGAGCACATCAATACGTGTGCATTATCGTTCAACTTTTGCATACTTCCAACCCACGTCTTCTGCATACCGGCCGGGTT
AGACGATAATCCTGATCATCGAAATCAGAAGTTGCAAAAGAGACAAAGATAA----------------------------
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----------------------------------------------------TATAGGTTTTAACTCAATTTCAGAA---
-----CAAGCTAGGTAGTGGTTTATATTATAAAACAACCGTAAGTTCCGTCTAATAACCAGATATTGCACGTGATGTTAA
TGTTGCAGTTAAGATTTTGAAGACATTTACACGTTCAAGCAACAGGTACAGTACTTGGTCCATCC-TGTTATAATTACAG
TACAGTTACATTGTTATTACTCTTAGCGCTTAAATTTGAGCTTT---GTCCAGAGATTTGCTTCGTCCTCCTCCATCTAA
TCAG--------ATACCTACACGACTGGTCCA-----------------GCCGGAGTCGCAGTCACTGAGCTCCACGATG
AGGTCCACGCCCCCGGCGTCTACAGTTAATCATACCCGAATTTCCCATCGAGCGGACGCCACCTGAATTTC-----CTAG
CAGGATCTTCCGTCCC--------TATAT--------------ATATCGGCTCCCTCCACATCCAAAAGACAAAACGTCT
GACACAACCACCACTAAAACCAGCGCAAAGATGATGAGGCATTCCCAAGCTCTCTCGCAGCTCGCCGTCCTCCTCCTCCT
CTTCCTCCTCGTCTCATCCAGCGCCGCTTCCACTCTAGACGACACCTGCAAGTCCGTCAGCGCGAGCAACAGGGACCTCG
GCTACGACTACTGCGTCAAGTTCTTCAAGGCGTGCAAGGACAGCGCCACCGCGGACAAGCGCGGCCTGGCCGTCATCGCC
ACGAAGATCATCCGAGCGGCAGCCGTGAACACCGGCAGGCGCATCGCCACCATCAAGGCCTCGCACGGGGACGACAGGAG
GATCCAGGGCCCGCTCGCCGACTGCGACGAGCTGTACTCGAGCGCCGTGGACCAGCTCGACGCGGCGGCGAGGGGCATCT
CGTCGGGGAAGTTCCAGGACGCCCTGACGAACCTCAGCGCCGCTGCGGACGCGCCACAGACCTGCGAGGAAGGGTTTCGC
GAGCTGGGCGTGAGTTCGCCGCTGGCCGACGAGGACTCCAAGTTCAGTAAGGAGTGCTCCATCGCTCTCGCTGTAACGAA
CACGTTGTAAGCGACAA-AGTCTATTAGTCATTTGGATCA------------ATATAAATAATCCTGGAATACAATTTTA
GACCAGATAAACTCCGCAATCACGTTTGGCCGCACTTTCCTTTGTTGTTCTATAAATTATACTCCCTCTGTAAACAACTT
CAGTGGATTTTTATTGTTCTTAAGTAGTGATCTAAACGCTCTTATATTAATTTATGAAAAGTGTGAAAGTAAGTAACAAG
GTCAGTGGATTTTTGGCCTCATGGCTCGCGGATGCTGTCCGATGCCTAGATCTCCGCATATGTGATGATGGTGAAGTTTC
TCAAAAAAAAATATGATCATGGTGAAATAGCAGTCACTAAGAAAACGGCACACAATTTGCGGACGATCG--TGGCCATCA
AAGCGAATGCATG----AACATCCATCGAGCATCAATGTTTGTCAATGTTCAGGAGATCTGGCGGCATGGGATGAGATGC
CCACGCGCGGCACGCTACCGAATTTTGTACGCAAGAGATGCTTGCCAGACAAGTGCAAGATTATATTATTGTTGGCAATC
-------------------AAATACGCCCACACGTATTAGTTGCCACATACATCAAAATAGCGGATGCCGGTATCCTTTT
GTTTAGTCATATCATTTTAAGTGTTT-----TACAGCGAAACGTCACAACGAATGGTTGCAGAACGAATCTGATACTGAT
ACCGGTAGCACATGATGGATGCATGGGTCATGCTGTGTCCGGC----------------------GGCGCCGGCCTCACC
GCGGGTAAGGTCCAGCCACGAAGGTCATGTCCAGTCAGGCAGTCAGCGTCGTCGCGCGCGGATGGAGGCGGCAAACCAGC
GT----GCGCGAACGTTTCGAGCCGAAGGTGCAAACTTCGGGAAAATTGGCC--------------ACGATAATCCTAAA
TTTTACTGTGTGGGCATCATGATTTCCAACCAAATGTTACCATGCACT--------------------------------
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>chr2D_2
-GTCGTTTCCTTCTCCGATCGATCGGCTGGTTTGATTGCTTCCGATCGATCGCTATCTGATGAGCGGCCAAATCCAGCAG
CCAAGAGGCGGTCGCACCGCACCTAGCGACGCAACGCCAAGCAGTCAGGAAGGATCGACTTGCACGGCAGCGGCGCCAAC
GCTCAAGCAATGACGCATGTCAGGC--C-GAGTGCGATCGGGATTGGGGCATGACCTTGACACGCCATCTCGTCACGAAT
TCACCATCAGGTTTTTCCCTCAAAAATTT-TACCATCACGTAT-------------ACACCAAGCCCATTTAATTTAGTC
CATTTTCTCTATCGGATACGTGTT-----TCGATGATTATGAAAGTGCATCTATTAATTTTGTTCTT----GTCATC-TT
CATGT---------------------------------------------------------------------------
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-------ACATCAGTACATGTGCATTATAGTTCAACTTTTGCATACTCCCAACCCACGTCTTCTGCATACCGGCCGGGTT
AGACGATAATCCTGATCATCGAAATCAGAAGTTGCAAAAGAGACAAATATAATATAGGTTTGAGGTGTCTAGGCACCCCC
TTATCAAAACCATACGTTCAGAATTCACCGCATAGAGATTTGTGCCATGTACTGTACCGTAATTTGATTAGCAAACGGAG
TGGCTGTTAAGCGCGGGAGGTTGCTGTCCGTGACATGCGGCCAGAGTACATCAACAGTGGCCCTCGCAATGTTCATCTGA
CATAGATTCCATTTCTCTACCAGCTGAGAGAAACAACATGACAATTCTCTCCGTTTTTTTAGTGTAGTACACTGTTGAGT
GAGAGAACGCTGCTGCATCAGACTTTTTGGAGAAGTGACAGAAATAATGGAGAGAGAGAGAGAGCGCGCCTATGAGAGAG
AACTTCACTTTCTTCTGAAGAAGTGACACAGAAAAAATGGAGAGAGGGAGAGAAAGCTTGTGACAGATAAACGTTGGAGT
TTACATGACAGAGAACAAAGAAATAAAAAAAAGTAGTATGACGCGCCAGAAGGAGGAAAAAGGAAGAAGTAAGTGAAGGA
AAGTAGTATGAGGCTGATGTGATGTTCCTGGGGTCCATGCACAAACGCCGCATGCACCGCAGACGCCACATGCAAAAGCC
CATGACCTGTCCTTTCAACTCCGGCCAGGCCTACCACCGTGCACGGTTTTACCTCTGCAAAAGCCTACTCTGCCTCACAC
AACCTACCTGCTTAATTAAACCTGCCACCGCTAATAACCTGCTGCGGCCTGCAACACTGCACGAATCTTAAAAAGGCTGG
ACGCGCCAGATAAGAGGGTGCCGGGGAACCCGGGTGCCATCACACCTTTTCGTATAGGTTTTAACTCAATTTCAGAA---
-----AAAGCTAGGTAGTAGTTTATATTATAAAACAACCATAAGTTCCGTCTAATAATCAGATATTGCACTTGATGTTAA
TGTTGCAGTTAAGATTTTGGAGACATTTACACGTTCAAGCAACAGGTACAGTACTTAGTCCATCC-TGTTATAATTACAG
TACAGTTACATTGTTATTACTCTTAGCACTTAAATTTGAGCTTT---GTCCAGAGATTTGCTTCGTCCTCCTCCATCTAA
CCAG--------TTACCTACACGACTAGTCCAGCCGGCGTAGCAGCAGCGCCGGAGTCGCAGTCACTGAACTCCACAACG
AGGTCCACGCCCCCGGCGTCTACAGTTAATCATACCCGAATTTCCCATCGAGCAGACGCCACCTGAATTTCATTGCCTAG
CAGGATCCCCCCTACGTCTCTCTATATAT--------------ATATCGTCTCCCTCCACATCCAAAAGACAAAACGTCT
GACACAACCACCACTAAAACCAGCGCAAAGATGACGAGGCCTTCGCAAGTTCTCCCGCAGCTCGCCG---TCCTCCTCCT
CTTCCTCCTCGTCTCGTCCAGCGCCGCTTCCACTCTAGACGACACCTGCAAGTCCGTCAGCGCGAGCAACAAGGACCTCG
CCTACGACTACTGCGTCAAGTTCTTCCAGGCGTGCAAGGGCAGCGCCACCGCGGACAAGCGCGGCCTCGCCGTCATCGCC
ACGAAGATCATCCGAGCGGCGGCCGTGAGCACCGGCAGGCGCATCGCCACCATCAAGGCATCGCAAGGGGACGACAGGAG
GATCCAGGGCCCGCTCGCCGACTGCGACGAGCTGTACTCGAGCGCCGTGGACCAGCTCGACGCGGCGGCGAGGGGCATCT
CGTCGGGGAAGTTCCAGGACGCCCTGACGAACCTCAGCGCCGCTGCGGACGCGCCGCAGACCTGCGAGGAAGGGTTCCGC
GAGCTGGGCGTGAGTTCGCCGCTGGCCGACGAGGACTCCAAGTTCAGTAAGGAGTGTTCCATCGCTCTCGCTGTAACGAA
CACGTTGTAAGCGACAAAAGTCTATAA-TCATTTGGATCAATATAATCCTGGAAT---ATAATCCTGTATGGATCGTGGT
GAAC----------------------------------------------------------------------------
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----------------------TGACATAGCAGTCATTAAGAACACGGCACACAATTTG-GGACGATCG--TGGCCATCA
AAGCGAATGCATG----AGCATCCATCGTGCATCAATGTTTGCCAATGTTCAGGAGATCTGACGGCATGGGATGAGATGC
CCATGCGCGGCACGCTAACGAATTTTGTACGCAAGAGATGCTTGCCAGGCAAGTGCAAGATTATATTATTGTTGCCATTT
GTTGATTAGCAAGGCAATCGAATACGCCCACACGTATTAGTTGCCACATACATCAAAATAGCGGATGCCGGTATCCTTTT
GTTTAGTCATATCATTTTCAAGTGTTTTACGTACAGCGAAACGTCACAACGA-TGGTTGCAGAACAAATCTGATA-----
-CCGGTAGCACATGATGGATGCATGGGTCATGCTGTGTCCGA---CGGCGCCGCAGCCTGCAGGTGGCGCCAGCCTCACC
GCGGGTAAGGTCCAGCCACGAAGGCCATGTCCGGTCAGGCAGTCAGCGTCGTCGCGCGCGGATGGAGGCGGCAAACCAGC
GT----GCGCGAACGTTTCGAGTCGAAGATGCAAACTT------------------------------------------
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>SNPs
----S-------------------S---------------------------------------------------S---
-------------------------------------------------S------------------------------
----------------------S-----S---------------------------------------------------
-S---------------------------S---S----S------------------------S----------------
-------------SS------S--------S----------------------S------------SSSSS---------
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------------------------------------------------------------S------S------------
-----S-------------------------S-----------S------------------------------------
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-----------------------------------------------------------------------------SSS
SSSSS--------------------------------------S------------------------------------
------------------------------S------------------------S---------S--------------
--------------------------------------------SSS---------------------------------
----SSSSSSSS----------------S-------------------------------------S-------------
-------------------------------------------------S------------------------S-----
-----------------------S-S---SSSSSSSSSSSSSS--S--------------S-S-----------------
-------------------------------------------S------------S-----------------------
--------------------------SS--------S-----------------S-----------S---------S---
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-----------------------------------------------S---------------S------------S---
---------S----------------------------------------------------------------------
-------------S------------------------------------------------------------------
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-------------------------------S-----------------------------------SSSS---------
-------------SSSS----S---------------------------S------------------------------
-------------------------------------S-----------S------------------------------
------------------S----------------------------------------------S-S------------
-----------------------------S----------------SS--------S------------------S----
-------------------------------------------SS--------S--------------------------
------------------------------------------------------S-S------S------S---------
S-SSSS---------------------------------SSS---------SSSSSSSSSSSSSSS--------------
--S------------S---------SS--------------S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_189
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---------ATGAGGCAAGTCAAGCTGCT---------------------------------------------------
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>reverse_2951
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----------------------------------------------------------------------ATGGCCATCA
AAGCGAATGC----------------------------------------------------------------------
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