Multiple sequence alignment - TraesCS2B01G471800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G471800 chr2B 100.000 2789 0 0 1 2789 668172867 668170079 0.000000e+00 5151.0
1 TraesCS2B01G471800 chr2B 89.885 1048 78 12 986 2025 668052553 668051526 0.000000e+00 1323.0
2 TraesCS2B01G471800 chr2B 85.586 111 8 8 2427 2530 668170410 668170301 2.940000e-20 110.0
3 TraesCS2B01G471800 chr2B 85.586 111 8 8 2458 2567 668170441 668170338 2.940000e-20 110.0
4 TraesCS2B01G471800 chr2D 86.886 1548 101 44 471 1998 558978354 558976889 0.000000e+00 1640.0
5 TraesCS2B01G471800 chr2D 87.336 1295 106 24 770 2044 559002459 559001203 0.000000e+00 1430.0
6 TraesCS2B01G471800 chr2D 93.846 455 25 3 2 454 559208493 559208040 0.000000e+00 682.0
7 TraesCS2B01G471800 chr2D 82.152 409 43 14 562 964 559207853 559207469 9.640000e-85 324.0
8 TraesCS2B01G471800 chr2D 86.441 59 5 3 2045 2100 615172932 615172990 8.340000e-06 62.1
9 TraesCS2B01G471800 chr5A 98.269 751 7 1 2045 2789 546168755 546168005 0.000000e+00 1310.0
10 TraesCS2B01G471800 chr5A 85.586 111 8 8 2427 2530 546168336 546168227 2.940000e-20 110.0
11 TraesCS2B01G471800 chr5A 85.586 111 8 8 2458 2567 546168367 546168264 2.940000e-20 110.0
12 TraesCS2B01G471800 chr2A 86.891 1190 83 27 836 1998 699642199 699641056 0.000000e+00 1266.0
13 TraesCS2B01G471800 chr2A 89.536 755 56 12 1248 1998 699605833 699605098 0.000000e+00 935.0
14 TraesCS2B01G471800 chr2A 83.717 608 53 26 619 1209 699606408 699605830 1.470000e-147 532.0
15 TraesCS2B01G471800 chr2A 93.182 264 14 3 1 263 699795751 699795491 4.360000e-103 385.0
16 TraesCS2B01G471800 chr2A 93.689 206 11 2 59 263 699774469 699774265 9.700000e-80 307.0
17 TraesCS2B01G471800 chr2A 96.377 138 4 1 294 430 699773005 699772868 2.800000e-55 226.0
18 TraesCS2B01G471800 chr1B 86.441 59 5 3 2045 2100 684686483 684686425 8.340000e-06 62.1
19 TraesCS2B01G471800 chr1A 87.037 54 6 1 2028 2081 32540278 32540330 3.000000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G471800 chr2B 668170079 668172867 2788 True 1790.333333 5151 90.390667 1 2789 3 chr2B.!!$R2 2788
1 TraesCS2B01G471800 chr2B 668051526 668052553 1027 True 1323.000000 1323 89.885000 986 2025 1 chr2B.!!$R1 1039
2 TraesCS2B01G471800 chr2D 558976889 558978354 1465 True 1640.000000 1640 86.886000 471 1998 1 chr2D.!!$R1 1527
3 TraesCS2B01G471800 chr2D 559001203 559002459 1256 True 1430.000000 1430 87.336000 770 2044 1 chr2D.!!$R2 1274
4 TraesCS2B01G471800 chr2D 559207469 559208493 1024 True 503.000000 682 87.999000 2 964 2 chr2D.!!$R3 962
5 TraesCS2B01G471800 chr5A 546168005 546168755 750 True 510.000000 1310 89.813667 2045 2789 3 chr5A.!!$R1 744
6 TraesCS2B01G471800 chr2A 699641056 699642199 1143 True 1266.000000 1266 86.891000 836 1998 1 chr2A.!!$R1 1162
7 TraesCS2B01G471800 chr2A 699605098 699606408 1310 True 733.500000 935 86.626500 619 1998 2 chr2A.!!$R3 1379
8 TraesCS2B01G471800 chr2A 699772868 699774469 1601 True 266.500000 307 95.033000 59 430 2 chr2A.!!$R4 371

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 1640 0.110486 AAGGATGGCGTGTCTGGTTT 59.89 50.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 3251 1.27055 CTCGTACAACCCAACTACGGT 59.729 52.381 0.0 0.0 35.14 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 6.563196 GCGTGTTTAAAAATGTAAAGGCCAAG 60.563 38.462 5.01 0.00 0.00 3.61
159 161 3.868835 ACGTCGTCTTTCCAATTTTTCG 58.131 40.909 0.00 0.00 0.00 3.46
161 163 2.977829 GTCGTCTTTCCAATTTTTCGGC 59.022 45.455 0.00 0.00 0.00 5.54
163 165 2.324860 GTCTTTCCAATTTTTCGGCCG 58.675 47.619 22.12 22.12 0.00 6.13
203 205 0.881118 TGGCCATTTTTCGACTCAGC 59.119 50.000 0.00 0.00 0.00 4.26
214 216 6.467723 TTTTCGACTCAGCTTGTAAGATTC 57.532 37.500 0.00 0.00 0.00 2.52
339 1570 5.105752 GCGACTACTGAAACATCTCAGATT 58.894 41.667 7.57 0.00 44.82 2.40
408 1640 0.110486 AAGGATGGCGTGTCTGGTTT 59.890 50.000 0.00 0.00 0.00 3.27
430 1662 2.653726 TGGAATGCACATGTACCATCC 58.346 47.619 0.00 4.17 0.00 3.51
431 1663 1.956477 GGAATGCACATGTACCATCCC 59.044 52.381 0.00 0.00 0.00 3.85
433 1665 0.546122 ATGCACATGTACCATCCCGT 59.454 50.000 0.00 0.00 0.00 5.28
434 1666 0.392327 TGCACATGTACCATCCCGTG 60.392 55.000 0.00 0.00 0.00 4.94
448 1680 6.532826 ACCATCCCGTGTTTTACTTTTACTA 58.467 36.000 0.00 0.00 0.00 1.82
454 1686 6.652062 CCCGTGTTTTACTTTTACTACCTGAT 59.348 38.462 0.00 0.00 0.00 2.90
456 1688 7.385752 CCGTGTTTTACTTTTACTACCTGATGA 59.614 37.037 0.00 0.00 0.00 2.92
457 1689 8.767085 CGTGTTTTACTTTTACTACCTGATGAA 58.233 33.333 0.00 0.00 0.00 2.57
528 1861 6.879400 AGAGAACTTTGAATAGTATCCGCTT 58.121 36.000 0.00 0.00 0.00 4.68
535 1868 3.243636 TGAATAGTATCCGCTTCGTTCCC 60.244 47.826 0.00 0.00 0.00 3.97
541 1874 1.729284 TCCGCTTCGTTCCCAAATAC 58.271 50.000 0.00 0.00 0.00 1.89
542 1875 1.276989 TCCGCTTCGTTCCCAAATACT 59.723 47.619 0.00 0.00 0.00 2.12
543 1876 2.081462 CCGCTTCGTTCCCAAATACTT 58.919 47.619 0.00 0.00 0.00 2.24
544 1877 2.486592 CCGCTTCGTTCCCAAATACTTT 59.513 45.455 0.00 0.00 0.00 2.66
545 1878 3.488489 CGCTTCGTTCCCAAATACTTTG 58.512 45.455 0.00 0.00 40.32 2.77
561 1894 9.260002 CAAATACTTTGGCAAAACTGAAATACT 57.740 29.630 14.43 0.00 37.01 2.12
577 1910 7.331193 ACTGAAATACTATTTGTCCGAGTCAAC 59.669 37.037 0.00 0.00 0.00 3.18
642 1975 0.250640 CTGTGCACTTCCCTGCTCTT 60.251 55.000 19.41 0.00 38.07 2.85
643 1976 0.535780 TGTGCACTTCCCTGCTCTTG 60.536 55.000 19.41 0.00 38.07 3.02
668 2001 4.737054 GCTAACTTAAGCGTACAGGTACA 58.263 43.478 1.29 0.00 35.87 2.90
669 2002 4.797349 GCTAACTTAAGCGTACAGGTACAG 59.203 45.833 1.29 4.29 35.87 2.74
670 2003 3.227810 ACTTAAGCGTACAGGTACAGC 57.772 47.619 1.29 12.43 35.87 4.40
671 2004 2.094338 ACTTAAGCGTACAGGTACAGCC 60.094 50.000 16.77 4.26 36.77 4.85
696 2029 1.067354 GCACCTTGCAGGAATCAAAGG 60.067 52.381 8.91 2.45 44.26 3.11
723 2056 1.493311 GTCGTCCTTTTGCGAGCTG 59.507 57.895 0.00 0.00 37.82 4.24
738 2071 1.463444 GAGCTGTAAACCGTCGCATTT 59.537 47.619 0.00 0.00 0.00 2.32
742 2075 3.181514 GCTGTAAACCGTCGCATTTATGT 60.182 43.478 4.00 0.00 0.00 2.29
774 2112 2.699954 ACGGGCAATGTCTAACTGAAG 58.300 47.619 0.00 0.00 0.00 3.02
820 2164 1.598701 AATGCAGAAAGGAAGCGGCC 61.599 55.000 0.00 0.00 0.00 6.13
822 2166 2.982744 GCAGAAAGGAAGCGGCCAC 61.983 63.158 2.24 0.00 0.00 5.01
823 2167 2.034221 AGAAAGGAAGCGGCCACC 59.966 61.111 2.24 0.00 0.00 4.61
838 2182 2.359478 ACCGTTGATTGACCCGCC 60.359 61.111 0.00 0.00 0.00 6.13
867 2218 2.011548 GCATCAGCCGTGACAATACCA 61.012 52.381 0.00 0.00 34.75 3.25
868 2219 2.564771 CATCAGCCGTGACAATACCAT 58.435 47.619 0.00 0.00 34.75 3.55
869 2220 3.727726 CATCAGCCGTGACAATACCATA 58.272 45.455 0.00 0.00 34.75 2.74
870 2221 3.173668 TCAGCCGTGACAATACCATAC 57.826 47.619 0.00 0.00 0.00 2.39
871 2222 2.159014 TCAGCCGTGACAATACCATACC 60.159 50.000 0.00 0.00 0.00 2.73
884 2235 1.893808 CATACCGCATCTGCCCACC 60.894 63.158 0.00 0.00 37.91 4.61
893 2244 1.815003 CATCTGCCCACCTTTCTTGAC 59.185 52.381 0.00 0.00 0.00 3.18
899 2250 2.143925 CCCACCTTTCTTGACGAAGAC 58.856 52.381 0.00 0.00 37.97 3.01
922 2273 0.581529 CGCATGGCCACGTACATAAG 59.418 55.000 8.16 0.00 0.00 1.73
923 2274 0.307760 GCATGGCCACGTACATAAGC 59.692 55.000 8.16 0.00 0.00 3.09
927 2278 1.807742 TGGCCACGTACATAAGCAAAC 59.192 47.619 0.00 0.00 0.00 2.93
968 2339 0.178981 AGCAGCCAAGAAAGGAAGCA 60.179 50.000 0.00 0.00 33.90 3.91
970 2341 0.243095 CAGCCAAGAAAGGAAGCAGC 59.757 55.000 0.00 0.00 0.00 5.25
971 2342 0.112025 AGCCAAGAAAGGAAGCAGCT 59.888 50.000 0.00 0.00 0.00 4.24
972 2343 1.352352 AGCCAAGAAAGGAAGCAGCTA 59.648 47.619 0.00 0.00 0.00 3.32
973 2344 1.470494 GCCAAGAAAGGAAGCAGCTAC 59.530 52.381 0.00 0.00 0.00 3.58
974 2345 2.877708 GCCAAGAAAGGAAGCAGCTACT 60.878 50.000 0.00 0.00 0.00 2.57
975 2346 3.619979 GCCAAGAAAGGAAGCAGCTACTA 60.620 47.826 0.00 0.00 0.00 1.82
976 2347 4.187694 CCAAGAAAGGAAGCAGCTACTAG 58.812 47.826 0.00 0.00 0.00 2.57
977 2348 3.535280 AGAAAGGAAGCAGCTACTAGC 57.465 47.619 0.00 0.00 42.84 3.42
978 2349 2.169561 AGAAAGGAAGCAGCTACTAGCC 59.830 50.000 4.32 0.00 43.77 3.93
979 2350 1.872773 AAGGAAGCAGCTACTAGCCT 58.127 50.000 4.32 3.07 43.77 4.58
980 2351 2.757894 AGGAAGCAGCTACTAGCCTA 57.242 50.000 6.52 0.00 43.77 3.93
1006 2415 2.796425 CTCAGCGCACGCATGTCTC 61.796 63.158 18.24 0.00 44.88 3.36
1554 2963 1.023502 GGGTGAGCTCCTACTACGTC 58.976 60.000 12.15 0.00 0.00 4.34
1803 3212 3.244078 ACACTTAATCGAGTTGTGGAGCA 60.244 43.478 18.07 0.00 33.44 4.26
1815 3224 5.057149 AGTTGTGGAGCATATTTACCGATC 58.943 41.667 0.00 0.00 0.00 3.69
1817 3226 5.290493 TGTGGAGCATATTTACCGATCTT 57.710 39.130 0.00 0.00 0.00 2.40
1845 3262 9.906660 TTAATACGTATATTTACCGTAGTTGGG 57.093 33.333 8.83 0.00 32.98 4.12
1850 3267 7.147983 ACGTATATTTACCGTAGTTGGGTTGTA 60.148 37.037 0.00 0.00 38.99 2.41
1851 3268 7.167468 CGTATATTTACCGTAGTTGGGTTGTAC 59.833 40.741 0.00 0.00 38.99 2.90
1852 3269 3.296322 TTACCGTAGTTGGGTTGTACG 57.704 47.619 0.00 0.00 38.99 3.67
1853 3270 1.327303 ACCGTAGTTGGGTTGTACGA 58.673 50.000 2.83 0.00 41.64 3.43
1854 3271 1.270550 ACCGTAGTTGGGTTGTACGAG 59.729 52.381 2.83 0.00 41.64 4.18
1855 3272 1.270550 CCGTAGTTGGGTTGTACGAGT 59.729 52.381 2.83 0.00 41.64 4.18
1860 3277 4.248691 AGTTGGGTTGTACGAGTACTTC 57.751 45.455 13.67 7.21 37.00 3.01
1867 3284 5.476614 GGTTGTACGAGTACTTCCAAGAAT 58.523 41.667 13.67 0.00 37.00 2.40
1874 3291 6.628185 ACGAGTACTTCCAAGAATAAACGAT 58.372 36.000 0.00 0.00 0.00 3.73
1881 3298 7.762382 ACTTCCAAGAATAAACGATGAAATCC 58.238 34.615 0.00 0.00 41.39 3.01
1908 3325 0.535780 TGTGAGTCCAGACGTACCGT 60.536 55.000 0.00 0.00 45.10 4.83
1938 3356 5.186603 AGGGCTCTTTCCTTCAAATGAATTC 59.813 40.000 0.00 0.00 33.01 2.17
1939 3357 5.186603 GGGCTCTTTCCTTCAAATGAATTCT 59.813 40.000 7.05 0.00 33.01 2.40
1940 3358 6.378280 GGGCTCTTTCCTTCAAATGAATTCTA 59.622 38.462 7.05 0.00 33.01 2.10
1941 3359 7.254137 GGCTCTTTCCTTCAAATGAATTCTAC 58.746 38.462 7.05 0.00 33.01 2.59
1942 3360 7.121907 GGCTCTTTCCTTCAAATGAATTCTACT 59.878 37.037 7.05 0.00 33.01 2.57
1943 3361 7.967303 GCTCTTTCCTTCAAATGAATTCTACTG 59.033 37.037 7.05 1.33 33.01 2.74
1944 3362 8.924511 TCTTTCCTTCAAATGAATTCTACTGT 57.075 30.769 7.05 0.00 33.01 3.55
2059 3483 8.516234 AGCTTATCTATACTAGTACACATGCAC 58.484 37.037 4.31 0.00 0.00 4.57
2162 3592 9.373603 TGCTACGAACAACAAACTTATACATAT 57.626 29.630 0.00 0.00 0.00 1.78
2369 3799 4.331717 TCCACTTCGACTTCAAAAGTGTTC 59.668 41.667 15.25 0.00 45.32 3.18
2580 4010 6.251376 GCTTGACTATTACAAAATTGCTTCCG 59.749 38.462 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.173131 CGTGAATCGTGATATTCATCGACAA 59.827 40.000 2.89 0.00 45.13 3.18
36 37 5.546526 CCTGCTTGGCCTTTACATTTTTAA 58.453 37.500 3.32 0.00 0.00 1.52
189 191 7.361286 GGAATCTTACAAGCTGAGTCGAAAAAT 60.361 37.037 0.00 0.00 0.00 1.82
203 205 6.590068 AGACATGAGATGGGAATCTTACAAG 58.410 40.000 0.00 0.00 33.60 3.16
339 1570 7.701539 ACTAATATCTCAAACAAATGTGCCA 57.298 32.000 0.00 0.00 0.00 4.92
430 1662 7.385752 TCATCAGGTAGTAAAAGTAAAACACGG 59.614 37.037 0.00 0.00 0.00 4.94
431 1663 8.301730 TCATCAGGTAGTAAAAGTAAAACACG 57.698 34.615 0.00 0.00 0.00 4.49
433 1665 9.280174 CCTTCATCAGGTAGTAAAAGTAAAACA 57.720 33.333 0.00 0.00 37.99 2.83
434 1666 8.235226 GCCTTCATCAGGTAGTAAAAGTAAAAC 58.765 37.037 0.00 0.00 46.07 2.43
448 1680 5.579753 ATTCATCATAGCCTTCATCAGGT 57.420 39.130 0.00 0.00 46.07 4.00
454 1686 7.609097 ACTTCTCTATTCATCATAGCCTTCA 57.391 36.000 0.00 0.00 35.61 3.02
456 1688 7.071698 TGGAACTTCTCTATTCATCATAGCCTT 59.928 37.037 0.00 0.00 35.61 4.35
457 1689 6.556495 TGGAACTTCTCTATTCATCATAGCCT 59.444 38.462 0.00 0.00 35.61 4.58
458 1690 6.763355 TGGAACTTCTCTATTCATCATAGCC 58.237 40.000 0.00 0.00 35.61 3.93
459 1691 8.845413 AATGGAACTTCTCTATTCATCATAGC 57.155 34.615 0.00 0.00 35.61 2.97
460 1692 9.434420 GGAATGGAACTTCTCTATTCATCATAG 57.566 37.037 11.43 0.00 39.71 2.23
461 1693 9.163894 AGGAATGGAACTTCTCTATTCATCATA 57.836 33.333 11.43 0.00 39.71 2.15
463 1695 7.443302 AGGAATGGAACTTCTCTATTCATCA 57.557 36.000 11.43 0.00 39.71 3.07
464 1696 7.772757 ACAAGGAATGGAACTTCTCTATTCATC 59.227 37.037 11.43 0.00 39.71 2.92
465 1697 7.555554 CACAAGGAATGGAACTTCTCTATTCAT 59.444 37.037 11.43 3.43 39.71 2.57
466 1698 6.881065 CACAAGGAATGGAACTTCTCTATTCA 59.119 38.462 11.43 0.00 39.71 2.57
469 1701 6.627087 TCACAAGGAATGGAACTTCTCTAT 57.373 37.500 0.00 0.00 0.00 1.98
507 1840 5.519206 ACGAAGCGGATACTATTCAAAGTTC 59.481 40.000 0.00 0.00 0.00 3.01
523 1856 1.734163 AGTATTTGGGAACGAAGCGG 58.266 50.000 0.00 0.00 37.08 5.52
541 1874 9.260002 ACAAATAGTATTTCAGTTTTGCCAAAG 57.740 29.630 5.10 0.00 0.00 2.77
542 1875 9.255304 GACAAATAGTATTTCAGTTTTGCCAAA 57.745 29.630 5.10 0.00 0.00 3.28
543 1876 7.870445 GGACAAATAGTATTTCAGTTTTGCCAA 59.130 33.333 5.10 0.00 0.00 4.52
544 1877 7.375053 GGACAAATAGTATTTCAGTTTTGCCA 58.625 34.615 5.10 0.00 0.00 4.92
545 1878 6.526674 CGGACAAATAGTATTTCAGTTTTGCC 59.473 38.462 5.10 0.00 0.00 4.52
546 1879 7.302524 TCGGACAAATAGTATTTCAGTTTTGC 58.697 34.615 5.10 0.00 0.00 3.68
547 1880 8.504005 ACTCGGACAAATAGTATTTCAGTTTTG 58.496 33.333 5.10 0.00 0.00 2.44
548 1881 8.617290 ACTCGGACAAATAGTATTTCAGTTTT 57.383 30.769 5.10 0.00 0.00 2.43
549 1882 7.876068 TGACTCGGACAAATAGTATTTCAGTTT 59.124 33.333 5.10 0.00 0.00 2.66
550 1883 7.383687 TGACTCGGACAAATAGTATTTCAGTT 58.616 34.615 5.10 0.00 0.00 3.16
551 1884 6.931838 TGACTCGGACAAATAGTATTTCAGT 58.068 36.000 5.10 2.08 0.00 3.41
552 1885 7.330946 TGTTGACTCGGACAAATAGTATTTCAG 59.669 37.037 5.10 0.00 0.00 3.02
553 1886 7.156000 TGTTGACTCGGACAAATAGTATTTCA 58.844 34.615 5.10 0.00 0.00 2.69
554 1887 7.591006 TGTTGACTCGGACAAATAGTATTTC 57.409 36.000 5.10 0.00 0.00 2.17
555 1888 8.561738 AATGTTGACTCGGACAAATAGTATTT 57.438 30.769 2.10 2.10 0.00 1.40
556 1889 8.561738 AAATGTTGACTCGGACAAATAGTATT 57.438 30.769 0.00 0.00 0.00 1.89
557 1890 8.450964 CAAAATGTTGACTCGGACAAATAGTAT 58.549 33.333 0.00 0.00 36.83 2.12
558 1891 7.442969 ACAAAATGTTGACTCGGACAAATAGTA 59.557 33.333 1.62 0.00 38.20 1.82
559 1892 6.262273 ACAAAATGTTGACTCGGACAAATAGT 59.738 34.615 1.62 0.00 38.20 2.12
560 1893 6.668323 ACAAAATGTTGACTCGGACAAATAG 58.332 36.000 1.62 0.00 38.20 1.73
561 1894 6.627395 ACAAAATGTTGACTCGGACAAATA 57.373 33.333 1.62 0.00 38.20 1.40
562 1895 5.514274 ACAAAATGTTGACTCGGACAAAT 57.486 34.783 1.62 0.00 38.20 2.32
577 1910 9.726232 CACAGATATGATCAAACCTACAAAATG 57.274 33.333 0.00 0.00 0.00 2.32
696 2029 0.938168 AAAAGGACGACGACTCGCAC 60.938 55.000 0.00 0.00 44.33 5.34
723 2056 3.304026 TCGACATAAATGCGACGGTTTAC 59.696 43.478 0.00 0.00 33.70 2.01
738 2071 1.540146 CCCGTTGCCATCATCGACATA 60.540 52.381 0.00 0.00 37.54 2.29
742 2075 2.513666 GCCCGTTGCCATCATCGA 60.514 61.111 0.00 0.00 37.54 3.59
774 2112 1.886777 GGCTGCGGAGAAGATGCTC 60.887 63.158 8.65 0.00 0.00 4.26
820 2164 2.686816 GGCGGGTCAATCAACGGTG 61.687 63.158 0.00 0.00 0.00 4.94
822 2166 3.131478 GGGCGGGTCAATCAACGG 61.131 66.667 0.00 0.00 0.00 4.44
823 2167 3.131478 GGGGCGGGTCAATCAACG 61.131 66.667 0.00 0.00 0.00 4.10
824 2168 2.034999 TGGGGCGGGTCAATCAAC 59.965 61.111 0.00 0.00 0.00 3.18
838 2182 3.818787 GGCTGATGCAACGCTGGG 61.819 66.667 9.72 0.00 41.91 4.45
867 2218 1.635817 AAGGTGGGCAGATGCGGTAT 61.636 55.000 0.00 0.00 43.26 2.73
868 2219 1.847798 AAAGGTGGGCAGATGCGGTA 61.848 55.000 0.00 0.00 43.26 4.02
869 2220 3.210012 AAAGGTGGGCAGATGCGGT 62.210 57.895 0.00 0.00 43.26 5.68
870 2221 2.361610 AAAGGTGGGCAGATGCGG 60.362 61.111 0.00 0.00 43.26 5.69
871 2222 0.962356 AAGAAAGGTGGGCAGATGCG 60.962 55.000 0.00 0.00 43.26 4.73
884 2235 0.790814 GGGCGTCTTCGTCAAGAAAG 59.209 55.000 0.00 0.00 44.04 2.62
914 2265 3.307242 CGCCTCTCAGTTTGCTTATGTAC 59.693 47.826 0.00 0.00 0.00 2.90
922 2273 1.508632 TGTTACGCCTCTCAGTTTGC 58.491 50.000 0.00 0.00 0.00 3.68
923 2274 3.325870 TGATGTTACGCCTCTCAGTTTG 58.674 45.455 0.00 0.00 0.00 2.93
927 2278 3.785486 TGATTGATGTTACGCCTCTCAG 58.215 45.455 0.00 0.00 0.00 3.35
968 2339 2.444010 AGCACCTAGTAGGCTAGTAGCT 59.556 50.000 24.89 18.85 42.95 3.32
970 2341 4.069304 CTGAGCACCTAGTAGGCTAGTAG 58.931 52.174 23.80 23.80 42.35 2.57
971 2342 3.748027 GCTGAGCACCTAGTAGGCTAGTA 60.748 52.174 16.61 8.72 42.35 1.82
972 2343 2.938838 CTGAGCACCTAGTAGGCTAGT 58.061 52.381 16.61 7.12 42.35 2.57
973 2344 1.611491 GCTGAGCACCTAGTAGGCTAG 59.389 57.143 16.61 7.74 39.63 3.42
974 2345 1.693627 GCTGAGCACCTAGTAGGCTA 58.306 55.000 16.61 0.00 39.63 3.93
975 2346 1.388065 CGCTGAGCACCTAGTAGGCT 61.388 60.000 16.61 8.36 39.63 4.58
976 2347 1.066587 CGCTGAGCACCTAGTAGGC 59.933 63.158 16.61 3.14 39.63 3.93
998 2401 2.011046 GCACAGAGGAAGGAGACATGC 61.011 57.143 0.00 0.00 0.00 4.06
1080 2489 0.670546 CGACCTTGTACCAGCACCAG 60.671 60.000 0.00 0.00 0.00 4.00
1689 3098 1.760086 AGCCATCTCCCTGACCTCG 60.760 63.158 0.00 0.00 0.00 4.63
1824 3239 5.852282 ACCCAACTACGGTAAATATACGT 57.148 39.130 0.00 0.00 43.88 3.57
1828 3245 6.042143 CGTACAACCCAACTACGGTAAATAT 58.958 40.000 0.00 0.00 31.69 1.28
1834 3251 1.270550 CTCGTACAACCCAACTACGGT 59.729 52.381 0.00 0.00 35.14 4.83
1845 3262 8.430828 GTTTATTCTTGGAAGTACTCGTACAAC 58.569 37.037 9.62 3.36 38.48 3.32
1850 3267 6.017400 TCGTTTATTCTTGGAAGTACTCGT 57.983 37.500 0.00 0.00 0.00 4.18
1851 3268 6.750501 TCATCGTTTATTCTTGGAAGTACTCG 59.249 38.462 0.00 0.00 0.00 4.18
1852 3269 8.475331 TTCATCGTTTATTCTTGGAAGTACTC 57.525 34.615 0.00 0.00 0.00 2.59
1853 3270 8.842358 TTTCATCGTTTATTCTTGGAAGTACT 57.158 30.769 0.00 0.00 0.00 2.73
1854 3271 9.704098 GATTTCATCGTTTATTCTTGGAAGTAC 57.296 33.333 0.00 0.00 0.00 2.73
1855 3272 8.889717 GGATTTCATCGTTTATTCTTGGAAGTA 58.110 33.333 0.00 0.00 0.00 2.24
1860 3277 6.968904 CAGTGGATTTCATCGTTTATTCTTGG 59.031 38.462 0.00 0.00 0.00 3.61
1867 3284 7.174080 TCACATTTCAGTGGATTTCATCGTTTA 59.826 33.333 0.00 0.00 39.93 2.01
1874 3291 4.761739 GGACTCACATTTCAGTGGATTTCA 59.238 41.667 0.00 0.00 39.93 2.69
1881 3298 2.733552 CGTCTGGACTCACATTTCAGTG 59.266 50.000 0.00 0.00 40.85 3.66
1908 3325 3.181329 TGAAGGAAAGAGCCCTCATGTA 58.819 45.455 0.00 0.00 32.57 2.29
2369 3799 7.172703 ACTTTGTCGAAGTATAACTTTTCTGGG 59.827 37.037 3.44 0.00 46.61 4.45
2405 3835 8.268850 TGTAAGAGATAATTGGTTCTGCTTTC 57.731 34.615 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.