>input_sequence_68829
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--ATGTCT------CCTTCCTCTGTGCCAGCGGCCGCCGTGGCGACGTCGACCCGCCTCATCCTGGTGCACGGCACGGGC
CACGGCGGCTGGTGCTGGTACAAGGTCGCCACCCTCCTCCGCGCCGCGGGACACCGCGTGGACGCGCCGGACCTCGCGGC
CTGCGGCGCCGACGCGCGCCGGCTGAGCGACGCGCCCACCTTCGAGGACTACACGCGCCCCCTGCTCGACGCGCTTCGGG
ACCTCCCGGACGGCGAGCGGGCGGTGCTGGTGGGCCACAGCTTCGGCGGGATGAGCATCGCGCTCGCGGCCGAGGAGTTC
CCGGACAAGGTTGCGGCGGCAGTGTTCCTCACCGCCTTCATGCCCGACTGCGACGCCCCGCGCACCCGCGTCATCGAGGA
GGTTCCCGTGTCCGACTGGATGGACAGCGTGGTCGACGAGGAGCACGCCCCGCCGTCGGTGTTCCTCGGCCCCGAGTTCG
TGCGCCGGAAGCTCTACCAGCTGACCTCCGAAGAGGACTACACGCTGTGCCAGAGCCTGGCGCGGGTGAGCTCCTACTAC
GTCGCCGACCAGCAGCAGCGGCCGCCGTTCAGCGCTGCCCGATACGGCGCGGTGACCAAGGTCTACGTGATCGCCAAGCA
GGACCAGGCCATGGTCGAGGAGTACCAGAGGCAGATGATCGCAGGCATCCCCGTGGCCGAGGTCAGGGAGATGGCTGACG
CCGACCACATGGCCATGCTCTCCGCGCCGGAGGGACTGGCGGGCCACCTCGCCGACATCGCCAACAACTACACTTAA---
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----------------------------------------------------------
>chr2B_1_TraesCS2B01G471800
TTGTCGATGAATATCACGATTCACGACACGGCGTGTTTAAAAATGTAAAGGCCAAGCAGGCAATGCAGGATTTAGGTTAT
TTGTGTACAAAAACACCAGGTATGTGCTGCAAAGGATATGTCACTGTTAATGTTAAATACGTC-GTCTTTCCAATTTTTC
GGCCGCCAGCCAAGGATGCCCAGGCTGGCCATTTTTCGACTCAGCTTGTAAGATTCCCATCTCATGTCTCTTTATAAGAG
AAAAAAGGATCAGGGAAGGAAATTCAGT----------------------------------------------------
--------------GTTCATGGTCCTTGAATCTCACTGCT----------------------------------------
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---CCATGGTCGTGAATGCTCTAATGGCGACTACTGAAACATCTCAGATTGGCACATTTGTTTGAGATATTAGTAAAGTC
TTCCATGAGTTGTCTCT-GAAAGGATGGCGTGTCTGGTTTATGGAATGCACATGTACCATCCCGTGTTTTACTTTTACTA
CCTGATGAAGGCTATGATGAA-----------------------------------------------------------
------------------------------------------TAGAGAAGTTCCATTCCTTGTGATTTTTCATAAAAGAG
AACTTTGAATAGTATCCGCTTCGTTCCCAAATACTTTGGCAAAACTGAAATACTATTTGTCCGAGTCAACATTTTGTAGG
TTTGATCATATCTGTGGAAACATTACCTGCATCTACTGTGCACTTCCCTGCTCTTGACGCTAACTTAAGCGTACAGGTAC
AGCCTCTGGCACCTTGCAGGAATCAAAGGTGCGAGTCGTCGTCCTTTTGCGAGCTGTAAACCGTCGCATTTATGTCGATG
ATGGCAACGGGCA-----ATGTCTAACTGAAGAG-CATCTTCTCCGCAGCCAGGCTGC-----CAATGCAGAAAGGAAGC
GGCCACCGTTGATTGACCCGCCCCAGCGTTG-------CATCAGCCGTGACAATACCATACCGCATCTGCCCACCTTTCT
TGACGAAGACGCCCGCATGGCCACGTACATAAGCAAACTGA---GAGGCGTAACATCAATCAAGCA--------------
---GCCAAGAAAGGAAGCAGCTACTAGCCTACTAGGTGCTCA--------------------------------GCGCAC
GCATGTCT------CCTTCCTCTGTGCCAGCGGCCGCCGTGGCGACGTCGACCCGCCTCATCCTGGTGCACGGCACGGGC
CACGGCGGCTGGTGCTGGTACAAGGTCGCCACCCTCCTCCGCGCCGCGGGACACCGCGTGGACGCGCCGGACCTCGCGGC
CTGCGGCGCCGACGCGCGCCGGCTGAGCGACGCGCCCACCTTCGAGGACTACACGCGCCCCCTGCTCGACGCGCTTCGGG
ACCTCCCGGACGGCGAGCGGGCGGTGCTGGTGGGCCACAGCTTCGGCGGGATGAGCATCGCGCTCGCGGCCGAGGAGTTC
CCGGACAAGGTTGCGGCGGCAGTGTTCCTCACCGCCTTCATGCCCGACTGCGACGCCCCGCGCACCCGCGTCATCGAGGA
GGTTCCCGTGTCCGACTGGATGGACAGCGTGGTCGACGAGGAGCACGCCCCGCCGTCGGTGTTCCTCGGCCCCGAGTTCG
TGCGCCGGAAGCTCTACCAGCTGACCTCCGAAGAGGACTACACGCTGTGCCAGAGCCTGGCGCGGGTGAGCTCCTACTAC
GTCGCCGACCAGCAGCAGCGGCCGCCGTTCAGCGCTGCCCGATACGGCGCGGTGACCAAGGTCTACGTGATCGCCAAGCA
GGACCAGGCCATGGTCGAGGAGTACCAGAGGCAGATGATCGCAGGCATCCCCGTGGCCGAGGTCAGGGAGATGGCTGACG
CCGACCACATGGCCATGCTCTCCGCGCCGGAGGGACTGGCGGGCCACCTCGCCGACATCGCCAACAACTACACTTAATCG
AGTTGTGGAGCATATTTACCGATCTTATT------AATA--CGTATATTTACCGTAGTTGGGTTGTACGAGTACTTCCAA
GAATAAACGATGAAATCCACTGAAATGTGAGTCCAGACGTACCGTACATGAGGGCTC-TTTCCTTCAAATGAATTCTACT
GTATTTTTATATAAATT--ATGTAGTATGCAAATCTGTAGATATTTTCCAATAGAATATTTTTTT----CAATGGAATAA
ACATTTCACTTTTCCAAGCTTATCTATACTAGTACACATGCACGTGCAACGCACGTGTAATAATGTAAAAAACTCATCAT
T------TGGAAGAAAATATATCATGTAATTGAATGCTCGTGCATTGCTACGAACAACAAACTTATACATATGTATTGAT
CAAAACAACATTATAACTCATAAGAGTAGCATGCAATTATGATTTTACGTAGACAAATATCTCCTTATATTTCTTAACAT
ATAGAGGAATCACCTTAAATCATACAAGGTTTCTTTTCTTGCCTCGCATGAAAAAAAATGTGTATACAGTATAATATATT
CCAAAACAATAAGATTCCACTTCGACTTCAAAAGTGTTCCCAGAAAAGTTATACTTCGACAAAGTATACAAATCGAAAGC
AGAACCAATTATCTCTTACAAAATTGCTTCACAATCTGCTTGACTATTACAAGATTGCTTGACAATCTGCTTGACTAATT
ATCTCTTACTAAGCTATAGACAATCTGCTTGACTAATTATCTCTTAGTAAGGTATAGACAATCTGCTTGACTATTACAAA
ATTGCTTCCGTTTTGTTGTTGAACAATTTTCAGATACAAGTATCATAAGAACATCAATGCACTTTACCTTTCCCCTGTCT
GAACTCAAGGGAGACCAAGGTGCTTCTAGATACTTCTTCTCATCTCAGTTTCTCGGTTCTCTATATGTTTTAGATTTGTC
TCACTTGTCAACCCATTGCTTCCAGGTTTTGTCTGGCAGAGAAAAAGAAAGATCATAG
>chr2D_2
-TGTCGATGAATATCACGATTCACGACACGGCGTGTATAAAAAGGTAAAGGCCAAACAGGCAATGCAGGATTTAGGTTAT
TTGTGTACAAAAACACCAGGTATGTGCTACAAAGGATATGTCACTGTTCATGTTAAATACGTCTGTCTTTCCAATTTTTC
TGACCCCAGCCAAGGATGCCCAGGCTGGCCGTTTTTCGACTCAGTTTGTAAGATTACCATCTCGTGTCTCTTTATATAAG
AGAAAAGGATCAGGGA-GGAAATTCAGT----------------------------------------------------
--------------GTTCATGGTCCTTGAATCTCACTGCT----------------------------------------
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---CCATGGTCGTGAATGCTCTAATGGCGACTACTAAAACATCTCAGATGGGCACATTTGTTTGAGATATTAGTAAAGCC
TTCCATGAGTTGTCTCTAGAAAGGATGGCATGTCTGGTTCATGGAATGCACATGTACCATCTTGCATTTTACTTTTACTG
CCTGAAGGCCTACACTTCGATGGCAAGTTTGAAAGTTCGCGGACAGACCGAACAGACGTGGGCAAATGGGGGCCTCCGTT
GGGGAGGTGTTTTTGTGTCCGAACAGTGTCCAAAGTGCTCTTTAGAGAAGTTCCATTCCTTGTGATTTTTCATGAAAGAA
AACTTTGAATAATATTTGCTCTGTTCCAAAATA----------------------TTTGTCCGAGTCAAAATTTTGTAGG
TTTGATCATATATGTGG-AACATTATCTGCATCTACTGTGTACTTCCCTGCTCCCAACGCTAACTTAAGCGTACAGCCG-
-----CTGGCTCCTTGCAGGAAACAAAGTTGCGAGCCGTCGTCCTTTTACGAGCACTAAGCCGTCACATTCATGGCGATG
ATGGCAACGGGCACAAACATGTCTAACTGAACAG-CATCTTCTCCGCCAGACTGC-------CAATTGCAGAAAGAAAGA
TGCGAG--GT--TTGACCCGCGCCAGCGTTG-------CATCAGCCGTGTCAATACG-----GCATCTGCCCTCTTTTCT
TGAAGAAGATGCCCGCATAGCCGAATACATAAATAAATCGA---GAGACGTAACAT-----AAGGA--------------
---GCCAAGAAAGG------------------------------------------------------------------
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>chr2A_59
----------------------------------------------------------GGCAATGCAGGATTTAGGTTAT
TTCTGTACAAAAACACCAGGTATGTGCTGCAAAGGATATGTCACTGTTAATGTTAAATACGTCTGTCTTTCCAAATTTTC
TGACCCCAGCCAAGGATGCCTAGGCTGGCCGTATTTCGACTCAGTTTGTAAGATGACCATCTCATGTCTCTTTATAAGAG
AAAAA-GGATCAGGGAAGGAAATTACTCTCTCCGTCCGGAAATACTTGTCATCAAAATGAATAAAAGGGGATGTATCTAT
ATGTTAGTAAAGTCGTTCATGGTCCTTGCATCTCACTGCTCCATGTGTCGGAGTAAATGACCACGGGTAGCCTAGCCGGC
TCCCCTGGCTCTTCTGAAAAATTACAAGCTGATCCGGCCCTCGAGAATCCAAGACGTGGGGCCGCCTTTCCCTTGCCGGC
TGTCTCCCAGGCCGGCTATCGGAAGGCGATCCGACTTTAGCCCTCATGAAGAAAGCTGCGGGAGGGCCGGCTCCGAGAAG
CCGGCCGCGAGAAGGCCGACTCCAAGAAGTCGGCTCCCACAAAGCGGTCAAGATCGTACCCTCGAAGTCTGCATCCACAT
AACGGTGATGTGACGGGGCGTGGCTACAGTAAAGCCTGCCACCCACGAATCCCGGAGTACACCTGGCATAGTGCGTCGTA
CGGGTGGCCATGGCCCGTCCGGCACGGCACTGTTGCCACGTTGACCCTGATGTCATCCACGACGGGCTGCCAGTGCGGCC
CACGGGCGGTGGGCCCCTTCGGGCAGAGAGACACCCGAAGGCGGCCAGGCCTCCCCTAGTCGGCCCAAGACAGAGCCGGC
TCTCCACAGCCGGCTTGCCACCTCCCTCGAAGGAGACGCCCCATTAAGGAGACAAGACGCGGTGAGGCTACAGCGATCAC
CCGCCGGACGGCGGCACTGTAGCCACGCCCACCTCGACGAAGCCCTCGTCACCAGGATTGAGCAATAGTAACCAGCCACC
GACAAGGCCCTGAACAGTGGGGCCTGCCTGTCGACCAAGGAGCCGGCAGCCGGCGGGACCCACCAGCTGGCGCAGAAGCC
GGCGAGTGTAGTCACAGACGGCTGGGCCCCATGCCCAGCCGGATTACCATTGTACCCCCGGGGGGTAGGCCTATATAAAC
CCCCCGGGACACCCATGCAAAGGGTTGATCCAAGCTAGTTCTAGACACCACATAGAGAGGGGAGGAGGGCTAGCCGTGCT
CTATTTCTTCTCCTCACAAAACAGCTCAAGGAGCATCGTGTAGCTACTTGTTCATCTAGTGATCATGCGGAGATCCCGCA
GAGCAGCAGTAGGGGTGTTATCTCCACGGAGAGCCCCGAAGCTGGGTAAGATTCGCCGGCATGCATGTCTTCGCCTCATC
TCGCTTCCAGGCACCGACGACGTCTTACTGGTTCCCATAATGATAAGCCACCCGTTGGCATATGTCGCACCTACCACCCG
ACACCATGGTCGTGAATGCTCTAATGGCGACTACTGAAATATCTCAGATGGGCACATTTGTTTGACATATTAGTAAAGTC
TTCCATGAGTTGTCTCTAGAAAGGATGGCGTGTCTGGTTCATGGAATGCACATGTACCATC-------------------
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>chr2D_471
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------------------------------------------TAGAGAAGTTCTATTCCTTGCGATTTTTCATAAAAGAA
AACTTTGAATAGTATTCGCTCCGTTCCAAAATA----------------------TCTGTCGGAGTCAAAATTCTGTAGA
TTCGATCATATCTGTGGATACATTACCTGCATCTACTGTGCACTTCCCTGCTGTCAACGCTAACTTAAGCGTACAGCCG-
-----CTGGCTCCTTGCGGAAATCAAAGCTGCGAGTCGTCGTCCCTTTGCGAGCTCTAAATCGTCGCATTCATGGCGATG
ATGGCAACGGGCACGAACACGTCC-ACGGAACAT-CATCTTCTCCGCAGCCAGGCTGCCATGACAATGCAGAAAGGAAGC
GGCGTG--TTGAC---CCCCTGCCAGCGTTG-------CATCAGCCATGACAATACC-----CCATCTGCACACTTTTCC
TCAAGAAGGTGCCCGCATG--------CATAAATAAAGCCAGACGAGGCGTACCAT----CAAGCA--------------
---GCCAAGAAACGAAGCTG-----------CTAGGTGCTCG--------------------------------GCGCAC
ACATGTCG---TCATCCTCCTCTGCCCCAGCGGCCGCCGTGCCGACGTCGACCCGCCTCATCCTGGTGCACGGCACGGGC
CACGGCGGGTGGTGCTGGTACAAGGTGGCCACCCTCCTCCGCGCCGCGGGGCACCGCGTCGACGCGCCGGACCTCGCGGC
ATGCGGCTCCGACGCGCGCCGGCTGAGCGACGCGCCCACCTTCGAGGACTACACGCGCCCCCTGCTCGACGCGCTCCGGG
ACCTCCCGGACGGCGAGCGGGCGGTGCTCGTGGGCCACAGCTTCGGCGGCATGAGCATCGCGCTCGCCGCCGAGGAGTTC
CCCGACAAGGTCGCGGCCGCCGTGTTCCTCACCGCCTTCATGCCCGACTGCGACGGCCCGCGCACCCGCGTCATCGAGGA
GGTTCCCGTGTCCGACTGGATGGACAGCGTGGTCGACGAGGAGCACGCCCCGCCGTCGGTGTTCCTCGGCCCCGAGTTCG
TGCGCCGGAAGCTCTACCAGCTGACTTCCGAGGAGGACTACACGCTGTGCCAGAGCCTGGCGCGGGTGAGCTCCTACTAC
GTGGCCGACCAGCAGCAACGGCCGCCGTTCAGCGCCGCCCGGTATGGCGCGGTGACCAAGGTCTACGTGATCGCCAAGCA
GGACCTGGCCATGGTCGAGGAGTACCAGAGGCAGATGATCGCAGGCATCCCCGTGGCTGAGGTGAGGGAGATGGCTGATG
CCGACCACATGGCCATGCTCTCCGCGCCGGAGGAACTGGCGGGCCACCTCGCCGACATCGCCAACAACTACACTTAATCG
AGTTGCGGAGCCTACTTATACTGTTCCTAATATAAAACG--CATGTC--TTCCCTAGTTGGATTGT------ACTTACAA
TTAC-----AAGAAATCTACTGAAATGTGAGTCCAGATGTACCGCAGACGAGGGCTCTT-TCTTTCAAATGAATT-----
------TTATATAAATTACATGTGGTATGCAAATCTGTAGATATTTTCCAATAGAAT-----------------------
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>chr2A_619
ATCTAA--------------------------------------------------------------------------
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-----------------------------------CAGTGCACTTCCCTGCTCTCAACGCTAACTTAAGCGTACAGCCG-
-----CTGGCTCCTTGCAGAAATCAAAGCTGCGAGTCGTCGTCCCTTTGCGAGCTCTAAACCGTCGCATTCATGGCGATG
ATGGCAACTGGCACGAACTTCGG---CTGAACCT-TATCTTCTCCGCAGCCAGGCTGCCATGACAATGCAGAAAGGAAGC
GGCGTG--TTGAC---CC-ACGCCAGCATACGTTGCATCATCAGCCATGACAATACC-----CCATCTGCCCACTTTTCC
TGAAGAAGATGCCCGCATGGCCGCATGCATAAATAAAGCCA---GAGGCGTACCAT----CAAGCA--------------
---GCCAAGAAACGAAGCTG-----------CTAGCTGCTCG--------------------------------GCGCAC
ACATGTCGGCATCCTCCTCCTCTGCGCCAGCGGCCGCCGTGGCGACGTCGACCCGCCTCATCCTGGTGCACGGCACGGGC
CACGGCGGGTGGTGCTGGTACAAGGTCGCCACCCTCCTCCGCGCCGCGGGGCACCGCGTCGACGCGCCGGACCTCGCGGC
CTGCGGCGCCGACGCGCGCCGGCTGAGCGACCCGCCAACCTTCGAGGACTAC----------------------------
---------------AGCGAGCGGTGCTCGTGGGCCACAGCTTCGGCGGCATGAGCGTCGCGCTCGCCGCCGAGGAGTTC
CCCGACAAGGTCGCCGCCGCCGTGTTCCTCACCGCCTTCATGCCGGACTGCGCCGGCCCGCGCACCCGCGTCATCGAGCA
GGTCCCCGTGTCCGACTGGATGGACAGCGTGGTCGACGAGGAGCACGTCCCGCCGTCGGTGTTCCTCGGGCCCGACTTCG
TGCGCCGGAAGCTCTACCAGCTGACCTCCGAAGAGGACTACACGCTGTGCCAGAGCCTCGCGCGGGTGAGCTCCTACTAC
GTGGCCGACCAGCAGCAACGGCCGCCGTTCAGCGCTGCCCGATACGGCGCGGTGACCAAGGTCTATGTGATTGCCAAGCA
GGACCAGGCCATGGTCGAGGAGTACCAGAGGCAGATGATCGCAGGCATCCCCGTGGCTGAGGTGAGGGAGATGGCTGACG
CCGACCACATGGCCATGCTCTCCGCGCCGGAGGAACTTGCGGGCCACCTCGCCGACATCGCCAACAACTACACTTGATCG
ATTTGCGGAGCCTACTTGTACTGTTCCTAAGATAAAACG--CATGTC--TTCCGTAGTTGGATTGT------ACTTACAA
TTAGAG--GAAGAAATCTACTGAAATGTGAGTCCAGATGTACCGCAGACGAGGGCTC-TT--TTTCAAATGAATT-----
------TTATATAAATTACATGTGGTATGCAAATCTGTAGATATTTTCCAATAGAAT-----------------------
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>chr2D_770
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--------------------------CTGAACAGCCATCTTCTCCGCAGCC---------TGCCAATGCATAAAGTACGC
CGCGAGGTTTGAT---CC-GCGTCAGCATTG-------CATCAGCC--GACAATACG-----GCATCTGCCCTTTTTACT
TGAAGAAGATGCCCGCATAGCCACATACATAAATAAAGTGA---GACGTGTAACATCAATCAAGCA--------------
---GCTA------------G-----------CTAGGTGCCTACTTGCCTCGGCGTGTACTGTCCAGTGCTCGGCGCGCAC
ACATGTCT------TCTTCCTCTGTGCCAGCGGCTGCCGTGGCGACGTCGACCCGCCTCATCCTGGTGCACGGCACGGGC
CACGGCGGGTGGTGCTGGTACAAGGTCGCCACCCTGCTCCGTGCCGCGGGGCACCGCGTGGACGCGCCGGACCTCGTGGC
GTGCGGCGCCGACGCGCGCCGGCTGCGCGACGCGCCCACCTTCGAGGACTACACGCGCCCCCTGCTCGACGCGCTCCGGG
ACCTCCCGGACGGCGAGCGGGCGGTGCTCGTGGGCCACAGCTTCGGCGGCATGAGCGTCGCGCTCGCCGCCGAGGAGTTC
CCCGACAAGGTCGCGGCTGCCGTGTTCCTCACCGCCTTCATGCCGGACTGCGACGGCCCGCGCACCCGTGTCATCGAGAA
GGTTCTCGCGTCCGACTGGATGGACAGTGTTATCGACGAGGAGCACGCCCCACCGTCGGTGTTTCTCGGGCCCGAGCTCG
TGCGCCAGAAGCTCTACCAGCTGAGCCCGGAGGAGGACTACACGCTGTGCCAGAGCCTGGCGCGGGTGAGCTCCTACTAC
GTGGCCGACCAGCAGCAGAGGCCGCCGTTCAGCGCTGCCCGGTACGGCGCGGTGACCAAGGTCTACGTGGTCGCCAAGCA
GGACCTGGCCATGGTCGAGGAGTACCAAAGGCAGATGATCGCAGGCATCCCCGTGGCTGAGGTGAGGGAGATGGCTGACG
CCGACCACATGGTCATGTTCTCTGCGCCGGAGGAACTGGCGGGCCACCTCGCCGACATCGCAAACACCTACACTTAACCG
AT--GCGGAGCCGATTTACCGATATAAAT------ATTGGGCGTCTATTTTCCGTAGTTGGATTGT------ACTTACAA
GAACAAACGAAGAAATCTACTGAAATGTGAGTCCATACGTACCGCACATGAGGGCTCTT-TCCTTCAAATGAATT-----
------TTATATAAATTA--TGTAGTATGCAAATCTGTAGAAATTTTCCAATAGAATCTATTTTTGATTCAATGGAATGA
ACGTTTCGTTTTTCCAAGCTTATCTAT-----------------------------------------------------
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>chr2A_836
CGCCGC--------------------------------------------------------------------------
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-----------------------CAGCATTG-------CATCAGCC--GACAATACG-----GCATCTGCCCTTTTTTCT
TGAAGAAGATGCCCGCATAGCCGCATACATAAATAAAGTGA---GACGTGTAACATGAATCAAGCAGCCAAGAAAAGGAA
GCAGCTA------------G-----------CTAGGTGCCTACTTGCCTCGGCGTGTACTGTCCAGTGCTCGGCGCGCAC
ACATGTCT------TCTTCCTCTGTGCCAGCGGCTGCCGTGGCGACGTCGACCCGCCTCATCCTGGTGCACGGCACGGGC
CACGGCGGGTGGTGCTGGTACAAGGTCGCCACCCTGCTCCGTGCCGCGGGGCACCGCGTGGACGCGCCGGACCTCGTGGC
GTGCGGCGCCGACGCGCGCCGGCTGCGCGACGCGCCCACCTTTGAGGACTACACGCGCCCCCTGCTCGACGCGCTCCGGG
ACCTCCCGGACGGCGAGCGGGCGGTGCTCGTGGGCCACAGCTTCGGCGGGATGAGCGTCGCGCTCGCGGCCGAGGAATTC
CCCGACAAGGTCGCCGCCGCCGTGTTCCTCACCGCCTTCATGCCCGACTGCGACGGCCCGCGCACCCGCGTCATCGAGAA
GGTTCTCGCGTCCGACTGGATGGACAGTGTTATCGACGAGGAGCACGCCCCACCGTCGGTGTTCCTCGGCCCCGAGCTCG
TGCGCCAGAAGCTCTACCAACTGAGCCCGGAGGAGGACTACACGTTGTGCCAGAGCCTGGCGCGGGTGAGCTCCTACTAC
GTGGCCGACCAGCAGCAACGGCCGCCGTTCAGCGCTGCCCGGTACGGCGCGGTGACCAAGGTCTACGTGGTCGCCAAGCA
GGACATGGCCATGGTTGAGGAGTACCAGAGGCACATGATTGCAGGCATCCCCGTGGTTGAGGTGAGGGAGATGGCTAACG
CCGACCACATGGTCATGTTCTCTGCGCCGGATGAACTGGCGGGCCACCTCGCCGACATCGCAAACACCTACACTTAACCG
AT--GCGGAGCCGTTTT----------------------------TCTTTTCCGTAGTTGGATTGT------ACTTACAA
GAACAAACGAAGAAATCTACTGAAATGTGAGTGCAGACGTACCGCACATGAGGGCTCTT-TCCTTCAAATGAATT-----
------TTATATAAATTA--TGTAGTATGCAAATCTGTAGAAATTTTCCAATAGAAT-----------------------
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>chr2B_986
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-----------------------------------GTGCTCG--------------------------------GCGCAC
ACATGTCT------TCTTCCTCTGCGCCAGCGGCCGCTGTGGCGACGTCGACCCGCCTCATCCTGGTGCACGGCACGGGC
CACGGCGGGTGGTGCTGGTACAAGGTGGCCACGCTGCTCCGCGCCGCGGGGCACCGCGTGGACGCGCCGGACCTCGCGGC
CTGCGGCGCGGACGCGCGCCCGCTGCGCGACGCGCCCACCTTCGAGGACTACACGCGCCCCCTGCTCGACGCGCTCCGGG
CCCTCCCGGACGGCGAGCGGGCGGTGCTCGTGGGCCACAGCTTCGGCGGGATGAGCGTCGCGCTCGCGGCCGAAGAGTTC
CCCGACAAGGTTGCGGCGGCCGTGTTCCTCGCCGCTTTCATGCCGGACTGCGCCAGCCCGCGCACCCGCGTCATCGAGAA
GGTTCTCGTGTCCGACTGGATGGACAGTGTTATCGACGAGGAGCACGCCCCGCCGTCGGTGTTCCTCGGGCCCGAGCTCG
TGCGGCGGAAGCTCTACCAGCTGAGCCCGGAGGAGGACTACACGCTGTGCCAGAGCCTGGCGCGGGTGAGCTCCTACTAC
GTGGCTGACCAGCAGCAACGGCCACCGTTCAGCGCTGCCCGATACGGCGCGGTGACCAAGGTCTACGTGGTCGCCAAGCA
GGATCTGGCCATGGTCGAGGAGTACCAGAGGCAGATGATCGCAGGCATCCCCGTGGCTGAGGTCAGGGAGATGGCTGACG
CCGACCACATGGTCATGCTCTCCGCGCCGGAGGAACTGGCGGGCCACCTCGCCGACATCGCCAACAACTACACTTAATCG
ATTTGTGGAGCCTATTTACACTGTTCCTAATATAAAACG--CATGTCTTTTCCCTAGTTGGATTGT------ACTTACAA
TTACAA--GAAGAAATCTACTGAAATGTGAGTCTAGATGTACCGCACACGAGGGCTC-T-TCCTTCAAATGATTT-----
------TTATATAAATTA--TCTAGTATGCAAATCTGTAGAAAGTTCGCAATATAATCTAT--TTGGTTCAAAGGAATAA
ACGTTTCA------------------------------------------------------------------------
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>chr5A_2045
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---------------------------ACTAGTACGCATGCATGTGCAACGCACGTGTAATAATGTAAAAAACTCATCAT
TCGTCTTTGGAAGAAAATATATCATGTAATTGAATGCTCGTGCATTGCTACGAACAACAAACTTATACATAGGTATTGAT
CAAAACAACATTATAACTCATAAGAGTAGCATGCAATTATGATTTTACGTAGACAAATATCTCCTTATATTTCTTAACCT
ATAGAGGAATCACCTTAAATCATACAAGGTTTCTTTTCTTGCCTCGCATGAAAAAAAATGTGTATACAGTATAATATATT
CCAAAACAATAAGATTCCACTTCGACTTCAAAAGTGTTTCCAGAAAAGTTATACTTCGACAAAGTATACAAATCAAAAGC
AGAACCAATTATCTCTTACAAAATTGCTTCACAATCTGCTTGACTATTACAAGATTGCTTGACAATCTGCTTGACTAATT
ATCTCTTACTAAGCTATAGACAATCTGCTTGACTAATTATCTCTTAGTAAGGTATAGACAATCTGCTTGACTATTACAAA
ATTGCTTCCCTTTTGTTGTTGAACAATTTTCAGATACAAGTATCATAAGAACATCAATGCACTTTACCTTTCCCCTGTCT
GAACTCAAGGGAGACCAAGGTGCTTCTAGATACTTCTTCTCATCTCAGTTTCTCGGTTCTCTATATGTTTTAGATTTGTC
TCACTTGTCAACCCATTGCTTCCAGGTTTTGTCTGGCAGAGAAAAAGAAAGATCATAG
>SNPs
S-----------------------------------S------S-----------S------------------------
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S-S-S-------------------------S-------------S----------S------------------------
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-------------------------------------------------S------------------------------
---------------------------------------S---------------------SS-SS-------------S
-----S-SSSSSS-SSSS--S-----------------------------------------------------------
-------------------------------------------------------------------------------S
---------------S----S------S-----SSSSSSSSSSSSSSSSSSSSSS--------------S----------
------------------------------------------------------SS--------------------SSSS
SSSSS-----S-----------------S--------------------------S--------------S---S-----
-------------------------------S------------------------------------------------
---S-SSS-------------S-----------------------------------SSSSS------------S-----
---S-----S--------------S-------SS---S------------------------------------------
------------------S-SSSSSSSSSSS-------------------------------------------------
S-------------S-----------------------------------------------------------------
--------S-----------------------------------------S-----------------------------
---------------------------------------------------------------------------S----
----------------------------S---------------------------------------------------
--S-----------------S----------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
---------------------------------------------------------S----------------------
---------------------------------S----------------------------------------------
-----------S-----------S-S------------S-----S-----S----------S----SSSSSS----S---
---S------S------S--------------------------S------------------------------SSSSS
SSSSSS---------------------------------------------------S-S--------------------
--S-----S--------------------------S------S-------------------------------------
-----------------------------------------------------------------------S--------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------S-----
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---------S----------------------------------------------------------------------
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>forward_1640
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--------------------AAGGATGGCGTGTCTGGTTT----------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>reverse_3251
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------ACCGTAGTTGGGTTGTACGAG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
