Multiple sequence alignment - TraesCS2B01G467000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G467000 chr2B 100.000 2547 0 0 1 2547 662682743 662685289 0.000000e+00 4704
1 TraesCS2B01G467000 chr2A 89.991 1079 63 24 1175 2231 695312853 695313908 0.000000e+00 1352
2 TraesCS2B01G467000 chr2A 92.500 440 27 2 245 684 695305475 695305908 2.150000e-175 625
3 TraesCS2B01G467000 chr2A 97.152 316 8 1 2232 2547 695313982 695314296 1.340000e-147 532
4 TraesCS2B01G467000 chr2A 87.500 456 37 6 724 1168 695307457 695307903 2.260000e-140 508
5 TraesCS2B01G467000 chr2A 75.357 560 101 23 1891 2444 695347913 695348441 4.240000e-58 235
6 TraesCS2B01G467000 chr2D 96.796 749 21 3 1802 2547 555912674 555913422 0.000000e+00 1247
7 TraesCS2B01G467000 chr2D 87.500 1048 73 21 727 1750 555911665 555912678 0.000000e+00 1157
8 TraesCS2B01G467000 chr2D 94.153 496 27 2 189 684 555911098 555911591 0.000000e+00 754
9 TraesCS2B01G467000 chr5D 96.855 318 10 0 289 606 472384549 472384866 1.340000e-147 532
10 TraesCS2B01G467000 chr4B 82.449 245 15 14 1 241 525304793 525305013 3.350000e-44 189
11 TraesCS2B01G467000 chr4B 82.449 245 15 14 1 241 525389890 525389670 3.350000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G467000 chr2B 662682743 662685289 2546 False 4704.000000 4704 100.000000 1 2547 1 chr2B.!!$F1 2546
1 TraesCS2B01G467000 chr2A 695312853 695314296 1443 False 942.000000 1352 93.571500 1175 2547 2 chr2A.!!$F3 1372
2 TraesCS2B01G467000 chr2A 695305475 695307903 2428 False 566.500000 625 90.000000 245 1168 2 chr2A.!!$F2 923
3 TraesCS2B01G467000 chr2A 695347913 695348441 528 False 235.000000 235 75.357000 1891 2444 1 chr2A.!!$F1 553
4 TraesCS2B01G467000 chr2D 555911098 555913422 2324 False 1052.666667 1247 92.816333 189 2547 3 chr2D.!!$F1 2358

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 314 0.24912 CTATGCCCAGTCGGAACACA 59.751 55.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 3106 0.319383 AGCTGCTCACGTCTCTGTTG 60.319 55.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.223423 CACAGTAGTGCAGTACCTCAG 57.777 52.381 24.85 15.86 39.21 3.35
21 22 1.546476 ACAGTAGTGCAGTACCTCAGC 59.454 52.381 24.85 2.57 0.00 4.26
22 23 1.546029 CAGTAGTGCAGTACCTCAGCA 59.454 52.381 24.85 0.00 36.25 4.41
23 24 2.167281 CAGTAGTGCAGTACCTCAGCAT 59.833 50.000 24.85 4.97 40.45 3.79
24 25 2.167281 AGTAGTGCAGTACCTCAGCATG 59.833 50.000 24.85 0.00 40.45 4.06
25 26 0.392193 AGTGCAGTACCTCAGCATGC 60.392 55.000 10.51 10.51 40.45 4.06
26 27 0.674581 GTGCAGTACCTCAGCATGCA 60.675 55.000 21.98 0.00 44.10 3.96
27 28 0.253894 TGCAGTACCTCAGCATGCAT 59.746 50.000 21.98 1.69 41.65 3.96
28 29 0.661552 GCAGTACCTCAGCATGCATG 59.338 55.000 22.70 22.70 36.88 4.06
69 70 8.970691 TCTTTTTAGCATCAAGTAATTTCAGC 57.029 30.769 0.00 0.00 0.00 4.26
70 71 8.575589 TCTTTTTAGCATCAAGTAATTTCAGCA 58.424 29.630 0.00 0.00 0.00 4.41
71 72 9.362539 CTTTTTAGCATCAAGTAATTTCAGCAT 57.637 29.630 0.00 0.00 0.00 3.79
75 76 7.870509 AGCATCAAGTAATTTCAGCATAAGA 57.129 32.000 0.00 0.00 0.00 2.10
76 77 8.461249 AGCATCAAGTAATTTCAGCATAAGAT 57.539 30.769 0.00 0.00 0.00 2.40
77 78 8.910944 AGCATCAAGTAATTTCAGCATAAGATT 58.089 29.630 0.00 0.00 0.00 2.40
78 79 8.965172 GCATCAAGTAATTTCAGCATAAGATTG 58.035 33.333 0.00 0.00 0.00 2.67
106 107 8.804688 TGTTTAATTCAGATTGTTTAAACGGG 57.195 30.769 13.45 1.78 42.91 5.28
107 108 7.868415 TGTTTAATTCAGATTGTTTAAACGGGG 59.132 33.333 13.45 2.11 42.91 5.73
108 109 7.527568 TTAATTCAGATTGTTTAAACGGGGT 57.472 32.000 13.45 0.00 0.00 4.95
109 110 5.638596 ATTCAGATTGTTTAAACGGGGTC 57.361 39.130 13.45 8.46 0.00 4.46
110 111 3.068560 TCAGATTGTTTAAACGGGGTCG 58.931 45.455 13.45 1.25 43.02 4.79
111 112 2.160813 CAGATTGTTTAAACGGGGTCGG 59.839 50.000 13.45 6.01 41.39 4.79
112 113 0.883153 ATTGTTTAAACGGGGTCGGC 59.117 50.000 13.45 0.00 41.39 5.54
113 114 0.465097 TTGTTTAAACGGGGTCGGCA 60.465 50.000 13.45 0.00 41.39 5.69
114 115 0.885596 TGTTTAAACGGGGTCGGCAG 60.886 55.000 13.45 0.00 41.39 4.85
115 116 0.886043 GTTTAAACGGGGTCGGCAGT 60.886 55.000 1.89 0.00 41.39 4.40
116 117 0.683973 TTTAAACGGGGTCGGCAGTA 59.316 50.000 0.00 0.00 41.39 2.74
117 118 0.903942 TTAAACGGGGTCGGCAGTAT 59.096 50.000 0.00 0.00 41.39 2.12
118 119 0.903942 TAAACGGGGTCGGCAGTATT 59.096 50.000 0.00 0.00 41.39 1.89
119 120 0.675522 AAACGGGGTCGGCAGTATTG 60.676 55.000 0.00 0.00 41.39 1.90
120 121 1.833787 AACGGGGTCGGCAGTATTGT 61.834 55.000 0.00 0.00 41.39 2.71
121 122 1.078708 CGGGGTCGGCAGTATTGTT 60.079 57.895 0.00 0.00 0.00 2.83
122 123 1.087771 CGGGGTCGGCAGTATTGTTC 61.088 60.000 0.00 0.00 0.00 3.18
123 124 0.252197 GGGGTCGGCAGTATTGTTCT 59.748 55.000 0.00 0.00 0.00 3.01
124 125 1.369625 GGGTCGGCAGTATTGTTCTG 58.630 55.000 0.00 0.00 36.18 3.02
125 126 1.066430 GGGTCGGCAGTATTGTTCTGA 60.066 52.381 0.00 0.00 35.20 3.27
126 127 2.420129 GGGTCGGCAGTATTGTTCTGAT 60.420 50.000 0.00 0.00 35.20 2.90
127 128 2.609459 GGTCGGCAGTATTGTTCTGATG 59.391 50.000 0.00 0.00 35.20 3.07
128 129 2.030946 GTCGGCAGTATTGTTCTGATGC 59.969 50.000 0.00 0.00 35.20 3.91
129 130 2.009051 CGGCAGTATTGTTCTGATGCA 58.991 47.619 0.00 0.00 35.40 3.96
130 131 2.419673 CGGCAGTATTGTTCTGATGCAA 59.580 45.455 0.00 0.00 35.40 4.08
131 132 3.486375 CGGCAGTATTGTTCTGATGCAAG 60.486 47.826 0.00 0.00 35.40 4.01
132 133 3.691118 GGCAGTATTGTTCTGATGCAAGA 59.309 43.478 0.00 0.00 35.40 3.02
133 134 4.156556 GGCAGTATTGTTCTGATGCAAGAA 59.843 41.667 0.00 0.00 35.40 2.52
134 135 5.163581 GGCAGTATTGTTCTGATGCAAGAAT 60.164 40.000 4.22 0.00 38.41 2.40
135 136 6.038603 GGCAGTATTGTTCTGATGCAAGAATA 59.961 38.462 4.22 0.00 38.41 1.75
136 137 7.415541 GGCAGTATTGTTCTGATGCAAGAATAA 60.416 37.037 11.32 11.32 40.26 1.40
137 138 7.430502 GCAGTATTGTTCTGATGCAAGAATAAC 59.569 37.037 11.19 3.14 39.25 1.89
138 139 8.671921 CAGTATTGTTCTGATGCAAGAATAACT 58.328 33.333 11.19 4.99 39.25 2.24
139 140 9.236006 AGTATTGTTCTGATGCAAGAATAACTT 57.764 29.630 11.19 2.19 39.25 2.66
140 141 9.846248 GTATTGTTCTGATGCAAGAATAACTTT 57.154 29.630 11.19 1.63 39.25 2.66
141 142 8.752766 ATTGTTCTGATGCAAGAATAACTTTG 57.247 30.769 11.19 0.00 39.25 2.77
142 143 7.509141 TGTTCTGATGCAAGAATAACTTTGA 57.491 32.000 4.22 0.00 38.41 2.69
143 144 7.939782 TGTTCTGATGCAAGAATAACTTTGAA 58.060 30.769 4.22 0.00 38.41 2.69
144 145 7.862372 TGTTCTGATGCAAGAATAACTTTGAAC 59.138 33.333 4.22 0.00 38.41 3.18
145 146 6.913170 TCTGATGCAAGAATAACTTTGAACC 58.087 36.000 0.00 0.00 36.61 3.62
146 147 6.489700 TCTGATGCAAGAATAACTTTGAACCA 59.510 34.615 0.00 0.00 36.61 3.67
147 148 6.446318 TGATGCAAGAATAACTTTGAACCAC 58.554 36.000 0.00 0.00 36.61 4.16
148 149 5.843673 TGCAAGAATAACTTTGAACCACA 57.156 34.783 0.00 0.00 36.61 4.17
149 150 6.214191 TGCAAGAATAACTTTGAACCACAA 57.786 33.333 0.00 0.00 36.61 3.33
150 151 6.634805 TGCAAGAATAACTTTGAACCACAAA 58.365 32.000 0.00 0.00 44.79 2.83
160 161 5.590530 TTTGAACCACAAAGCTTACATGT 57.409 34.783 2.69 2.69 42.57 3.21
161 162 4.829064 TGAACCACAAAGCTTACATGTC 57.171 40.909 0.00 0.00 0.00 3.06
162 163 4.460263 TGAACCACAAAGCTTACATGTCT 58.540 39.130 0.00 0.00 0.00 3.41
163 164 4.515191 TGAACCACAAAGCTTACATGTCTC 59.485 41.667 0.00 0.00 0.00 3.36
164 165 3.412386 ACCACAAAGCTTACATGTCTCC 58.588 45.455 0.00 0.00 0.00 3.71
165 166 3.181445 ACCACAAAGCTTACATGTCTCCA 60.181 43.478 0.00 0.00 0.00 3.86
166 167 3.820467 CCACAAAGCTTACATGTCTCCAA 59.180 43.478 0.00 0.00 0.00 3.53
167 168 4.460382 CCACAAAGCTTACATGTCTCCAAT 59.540 41.667 0.00 0.00 0.00 3.16
168 169 5.396484 CACAAAGCTTACATGTCTCCAATG 58.604 41.667 0.00 0.00 0.00 2.82
169 170 5.048504 CACAAAGCTTACATGTCTCCAATGT 60.049 40.000 0.00 0.00 0.00 2.71
170 171 5.182001 ACAAAGCTTACATGTCTCCAATGTC 59.818 40.000 0.00 0.00 0.00 3.06
171 172 4.833478 AGCTTACATGTCTCCAATGTCT 57.167 40.909 0.00 0.00 0.00 3.41
172 173 4.511527 AGCTTACATGTCTCCAATGTCTG 58.488 43.478 0.00 0.00 0.00 3.51
173 174 4.223700 AGCTTACATGTCTCCAATGTCTGA 59.776 41.667 0.00 0.00 0.00 3.27
174 175 4.569966 GCTTACATGTCTCCAATGTCTGAG 59.430 45.833 0.00 0.00 0.00 3.35
175 176 2.983229 ACATGTCTCCAATGTCTGAGC 58.017 47.619 0.00 0.00 0.00 4.26
176 177 2.570752 ACATGTCTCCAATGTCTGAGCT 59.429 45.455 0.00 0.00 0.00 4.09
177 178 3.771479 ACATGTCTCCAATGTCTGAGCTA 59.229 43.478 0.00 0.00 0.00 3.32
178 179 4.141981 ACATGTCTCCAATGTCTGAGCTAG 60.142 45.833 0.00 0.00 0.00 3.42
179 180 3.435275 TGTCTCCAATGTCTGAGCTAGT 58.565 45.455 0.00 0.00 0.00 2.57
180 181 3.834813 TGTCTCCAATGTCTGAGCTAGTT 59.165 43.478 0.00 0.00 0.00 2.24
181 182 4.284490 TGTCTCCAATGTCTGAGCTAGTTT 59.716 41.667 0.00 0.00 0.00 2.66
182 183 4.629200 GTCTCCAATGTCTGAGCTAGTTTG 59.371 45.833 0.00 0.00 0.00 2.93
183 184 3.338249 TCCAATGTCTGAGCTAGTTTGC 58.662 45.455 0.00 0.00 0.00 3.68
185 186 4.222810 TCCAATGTCTGAGCTAGTTTGCTA 59.777 41.667 0.00 0.00 44.17 3.49
186 187 4.331168 CCAATGTCTGAGCTAGTTTGCTAC 59.669 45.833 0.00 0.00 44.17 3.58
187 188 5.174395 CAATGTCTGAGCTAGTTTGCTACT 58.826 41.667 0.00 0.00 44.17 2.57
192 193 6.657966 TGTCTGAGCTAGTTTGCTACTTACTA 59.342 38.462 0.00 0.00 44.17 1.82
204 205 8.674607 GTTTGCTACTTACTACATTAATTGCCT 58.325 33.333 0.00 0.00 0.00 4.75
241 242 6.261826 CCAGAGAGGTGCTTTTATGAAATAGG 59.738 42.308 0.00 0.00 0.00 2.57
243 244 6.069381 AGAGAGGTGCTTTTATGAAATAGGGT 60.069 38.462 0.00 0.00 0.00 4.34
279 280 2.408368 GCGCTGGTTTTGTTTAATGCTC 59.592 45.455 0.00 0.00 0.00 4.26
280 281 2.986479 CGCTGGTTTTGTTTAATGCTCC 59.014 45.455 0.00 0.00 0.00 4.70
313 314 0.249120 CTATGCCCAGTCGGAACACA 59.751 55.000 0.00 0.00 0.00 3.72
347 348 0.694444 GGATAGAGGAGTTGCCCCCA 60.694 60.000 0.00 0.00 37.37 4.96
389 390 3.846896 GTCTGAAGACGTTACTGATGACG 59.153 47.826 0.00 0.00 43.13 4.35
583 585 2.124695 GAGACGGGGGTTGGATGC 60.125 66.667 0.00 0.00 0.00 3.91
606 608 5.195940 CCATCCTCACCATCTTGTAACATT 58.804 41.667 0.00 0.00 0.00 2.71
621 623 8.208224 TCTTGTAACATTGACCTGACTTTTCTA 58.792 33.333 0.00 0.00 0.00 2.10
670 672 8.747666 TGTAAAATACGCAAATGTTTTCTGTTC 58.252 29.630 0.00 0.00 0.00 3.18
682 684 7.630242 ATGTTTTCTGTTCAGAAGTTCAGAA 57.370 32.000 13.69 6.61 42.57 3.02
683 685 7.076842 TGTTTTCTGTTCAGAAGTTCAGAAG 57.923 36.000 10.66 1.40 44.13 2.85
684 686 6.655003 TGTTTTCTGTTCAGAAGTTCAGAAGT 59.345 34.615 10.66 0.00 44.13 3.01
685 687 7.174946 TGTTTTCTGTTCAGAAGTTCAGAAGTT 59.825 33.333 10.66 2.61 44.13 2.66
686 688 6.910536 TTCTGTTCAGAAGTTCAGAAGTTC 57.089 37.500 19.50 19.50 40.46 3.01
687 689 5.977635 TCTGTTCAGAAGTTCAGAAGTTCA 58.022 37.500 26.07 9.38 42.10 3.18
688 690 6.045318 TCTGTTCAGAAGTTCAGAAGTTCAG 58.955 40.000 26.07 20.30 42.10 3.02
689 691 5.977635 TGTTCAGAAGTTCAGAAGTTCAGA 58.022 37.500 26.07 21.88 42.10 3.27
696 698 4.517285 AGTTCAGAAGTTCAGAAGCACAA 58.483 39.130 10.66 0.00 0.00 3.33
718 720 6.630071 CAAATAATTGTTACACCCCCTGAAG 58.370 40.000 0.00 0.00 0.00 3.02
719 721 2.215942 ATTGTTACACCCCCTGAAGC 57.784 50.000 0.00 0.00 0.00 3.86
720 722 1.145571 TTGTTACACCCCCTGAAGCT 58.854 50.000 0.00 0.00 0.00 3.74
722 724 1.906574 TGTTACACCCCCTGAAGCTAG 59.093 52.381 0.00 0.00 0.00 3.42
725 2245 1.133809 ACACCCCCTGAAGCTAGCAA 61.134 55.000 18.83 0.66 0.00 3.91
729 2249 0.393537 CCCCTGAAGCTAGCAACTGG 60.394 60.000 18.83 20.38 0.00 4.00
735 2255 4.367450 CTGAAGCTAGCAACTGGATCTAC 58.633 47.826 18.83 0.00 0.00 2.59
750 2270 3.130693 GGATCTACGTAACTGACTGCCTT 59.869 47.826 0.00 0.00 0.00 4.35
760 2280 5.740290 AACTGACTGCCTTTAAGCTACTA 57.260 39.130 0.00 0.00 0.00 1.82
761 2281 5.074584 ACTGACTGCCTTTAAGCTACTAC 57.925 43.478 0.00 0.00 0.00 2.73
762 2282 4.773149 ACTGACTGCCTTTAAGCTACTACT 59.227 41.667 0.00 0.00 0.00 2.57
763 2283 5.246429 ACTGACTGCCTTTAAGCTACTACTT 59.754 40.000 0.00 0.00 0.00 2.24
764 2284 5.479306 TGACTGCCTTTAAGCTACTACTTG 58.521 41.667 0.00 0.00 0.00 3.16
765 2285 5.011738 TGACTGCCTTTAAGCTACTACTTGT 59.988 40.000 0.00 0.00 0.00 3.16
766 2286 6.209986 TGACTGCCTTTAAGCTACTACTTGTA 59.790 38.462 0.00 0.00 0.00 2.41
767 2287 6.396450 ACTGCCTTTAAGCTACTACTTGTAC 58.604 40.000 0.00 0.00 0.00 2.90
768 2288 6.210984 ACTGCCTTTAAGCTACTACTTGTACT 59.789 38.462 0.00 0.00 0.00 2.73
769 2289 6.395629 TGCCTTTAAGCTACTACTTGTACTG 58.604 40.000 0.00 0.00 0.00 2.74
770 2290 5.291371 GCCTTTAAGCTACTACTTGTACTGC 59.709 44.000 0.00 0.00 0.00 4.40
804 2324 3.814842 CACTGGAGTTGTGCATGTCTTAA 59.185 43.478 0.00 0.00 0.00 1.85
833 2354 2.522836 TAACAGGCACCGAAAACGTA 57.477 45.000 0.00 0.00 0.00 3.57
834 2355 1.886886 AACAGGCACCGAAAACGTAT 58.113 45.000 0.00 0.00 0.00 3.06
866 2391 7.773489 TGACCATTGAACCATCTTAAAATGA 57.227 32.000 0.00 0.00 0.00 2.57
950 2475 2.450476 CCTTTTCCCCAAGATCACCAG 58.550 52.381 0.00 0.00 0.00 4.00
956 2481 1.376424 CCAAGATCACCAGCAGCGT 60.376 57.895 0.00 0.00 0.00 5.07
1025 2550 3.168528 ACCCACAAGCCAGTCGGT 61.169 61.111 0.00 0.00 33.28 4.69
1123 2654 3.748863 CAGGAGATCCACCTGTTCG 57.251 57.895 21.43 3.75 46.71 3.95
1134 2665 1.080705 CCTGTTCGAGGTGACCGTC 60.081 63.158 0.00 0.00 37.02 4.79
1174 2705 1.387539 GGAGGACGACTACTACCACC 58.612 60.000 0.00 0.00 0.00 4.61
1176 2707 1.742268 GAGGACGACTACTACCACCAC 59.258 57.143 0.00 0.00 0.00 4.16
1177 2708 0.813821 GGACGACTACTACCACCACC 59.186 60.000 0.00 0.00 0.00 4.61
1178 2709 1.538047 GACGACTACTACCACCACCA 58.462 55.000 0.00 0.00 0.00 4.17
1179 2710 1.200948 GACGACTACTACCACCACCAC 59.799 57.143 0.00 0.00 0.00 4.16
1180 2711 1.202976 ACGACTACTACCACCACCACT 60.203 52.381 0.00 0.00 0.00 4.00
1181 2712 2.040278 ACGACTACTACCACCACCACTA 59.960 50.000 0.00 0.00 0.00 2.74
1182 2713 2.421424 CGACTACTACCACCACCACTAC 59.579 54.545 0.00 0.00 0.00 2.73
1183 2714 2.757314 GACTACTACCACCACCACTACC 59.243 54.545 0.00 0.00 0.00 3.18
1184 2715 1.747355 CTACTACCACCACCACTACCG 59.253 57.143 0.00 0.00 0.00 4.02
1233 2764 4.035102 GCCTCGCCCCTGTTCCTT 62.035 66.667 0.00 0.00 0.00 3.36
1261 2805 4.036734 ACCGCTACATTTCTATGCCATTTG 59.963 41.667 0.00 0.00 35.03 2.32
1301 2847 4.096382 GTGTTTTCTCTCAAACCTCAAGCA 59.904 41.667 0.00 0.00 36.03 3.91
1302 2848 4.889409 TGTTTTCTCTCAAACCTCAAGCAT 59.111 37.500 0.00 0.00 36.03 3.79
1335 2881 3.554692 CGCCATGTTCGAGACCGC 61.555 66.667 0.00 0.00 35.37 5.68
1410 2956 3.327757 AGTGAGTGAACATTCCTGGCTTA 59.672 43.478 0.00 0.00 0.00 3.09
1418 2964 3.535561 ACATTCCTGGCTTACTTCATCG 58.464 45.455 0.00 0.00 0.00 3.84
1419 2965 3.197766 ACATTCCTGGCTTACTTCATCGA 59.802 43.478 0.00 0.00 0.00 3.59
1420 2966 4.141620 ACATTCCTGGCTTACTTCATCGAT 60.142 41.667 0.00 0.00 0.00 3.59
1421 2967 3.735237 TCCTGGCTTACTTCATCGATC 57.265 47.619 0.00 0.00 0.00 3.69
1431 2977 2.823154 ACTTCATCGATCCTAGCTAGGC 59.177 50.000 31.76 19.11 43.31 3.93
1437 2983 3.969553 TCGATCCTAGCTAGGCATACAT 58.030 45.455 31.76 20.62 43.31 2.29
1451 2997 9.388506 GCTAGGCATACATAGATATTTGATGTT 57.611 33.333 0.00 0.00 35.48 2.71
1485 3031 0.681733 TCTGGTTGAGCAGGAGTCAC 59.318 55.000 10.01 0.00 0.00 3.67
1495 3041 4.394712 GGAGTCACGGGGGTGCTG 62.395 72.222 0.00 0.00 0.00 4.41
1527 3073 4.699522 GGACGACCCTGTGCCCAC 62.700 72.222 0.00 0.00 0.00 4.61
1547 3093 4.338539 ACGACGACGGGCACTGAC 62.339 66.667 12.58 0.00 44.46 3.51
1579 3125 0.319383 CAACAGAGACGTGAGCAGCT 60.319 55.000 0.00 0.00 0.00 4.24
1615 3161 5.917462 AGCAACACATTAGCTTTCCTTTTT 58.083 33.333 0.00 0.00 34.37 1.94
1628 3174 8.237811 AGCTTTCCTTTTTCTCTTTCACAATA 57.762 30.769 0.00 0.00 0.00 1.90
1701 3259 2.536365 TGCTGTTATAAACCTCTCGCG 58.464 47.619 0.00 0.00 0.00 5.87
1758 3316 1.411246 TCTCCGGGGTTCATCAATACG 59.589 52.381 0.00 0.00 0.00 3.06
1759 3317 1.411246 CTCCGGGGTTCATCAATACGA 59.589 52.381 0.00 0.00 0.00 3.43
1762 3320 2.623535 CGGGGTTCATCAATACGACAA 58.376 47.619 0.00 0.00 0.00 3.18
1795 3353 4.182339 GTTCAGTTTTAACCCCGCAAAAA 58.818 39.130 0.00 0.00 0.00 1.94
1911 3470 2.597510 AAAACCAGTGCTCGCCCC 60.598 61.111 0.00 0.00 0.00 5.80
2193 3760 6.537453 AAGCACTAGAGCTATCTTCAGAAA 57.463 37.500 15.37 0.00 45.89 2.52
2406 4046 6.791887 TTTTGCATTGTTCACTGTCAAAAA 57.208 29.167 15.18 8.34 31.66 1.94
2421 4061 4.405358 TGTCAAAAAGGAGCATTGGTTTCT 59.595 37.500 0.00 0.00 0.00 2.52
2485 4125 3.394606 ACAGATCACACTTAACAAGGGGT 59.605 43.478 0.00 0.00 35.78 4.95
2501 4141 4.222124 AGGGGTCATCACAAGACAATAC 57.778 45.455 0.00 0.00 37.74 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.546476 GCTGAGGTACTGCACTACTGT 59.454 52.381 3.91 0.00 41.55 3.55
2 3 1.546029 TGCTGAGGTACTGCACTACTG 59.454 52.381 3.91 0.00 45.73 2.74
3 4 1.924731 TGCTGAGGTACTGCACTACT 58.075 50.000 3.91 0.00 45.73 2.57
9 10 0.661552 CATGCATGCTGAGGTACTGC 59.338 55.000 20.33 0.00 41.55 4.40
43 44 9.410556 GCTGAAATTACTTGATGCTAAAAAGAA 57.589 29.630 0.00 0.00 0.00 2.52
44 45 8.575589 TGCTGAAATTACTTGATGCTAAAAAGA 58.424 29.630 0.00 0.00 0.00 2.52
45 46 8.746922 TGCTGAAATTACTTGATGCTAAAAAG 57.253 30.769 0.00 0.00 0.00 2.27
49 50 9.394767 TCTTATGCTGAAATTACTTGATGCTAA 57.605 29.630 0.00 0.00 0.00 3.09
50 51 8.962884 TCTTATGCTGAAATTACTTGATGCTA 57.037 30.769 0.00 0.00 0.00 3.49
51 52 7.870509 TCTTATGCTGAAATTACTTGATGCT 57.129 32.000 0.00 0.00 0.00 3.79
52 53 8.965172 CAATCTTATGCTGAAATTACTTGATGC 58.035 33.333 0.00 0.00 0.00 3.91
80 81 9.250624 CCCGTTTAAACAATCTGAATTAAACAA 57.749 29.630 18.07 0.00 39.75 2.83
81 82 7.868415 CCCCGTTTAAACAATCTGAATTAAACA 59.132 33.333 18.07 0.00 39.75 2.83
82 83 7.868922 ACCCCGTTTAAACAATCTGAATTAAAC 59.131 33.333 18.07 14.65 38.37 2.01
83 84 7.953752 ACCCCGTTTAAACAATCTGAATTAAA 58.046 30.769 18.07 0.00 0.00 1.52
84 85 7.527568 ACCCCGTTTAAACAATCTGAATTAA 57.472 32.000 18.07 0.00 0.00 1.40
85 86 6.128227 CGACCCCGTTTAAACAATCTGAATTA 60.128 38.462 18.07 0.00 0.00 1.40
86 87 5.335348 CGACCCCGTTTAAACAATCTGAATT 60.335 40.000 18.07 0.00 0.00 2.17
87 88 4.155280 CGACCCCGTTTAAACAATCTGAAT 59.845 41.667 18.07 0.00 0.00 2.57
88 89 3.499157 CGACCCCGTTTAAACAATCTGAA 59.501 43.478 18.07 0.00 0.00 3.02
89 90 3.068560 CGACCCCGTTTAAACAATCTGA 58.931 45.455 18.07 0.00 0.00 3.27
90 91 2.160813 CCGACCCCGTTTAAACAATCTG 59.839 50.000 18.07 1.55 0.00 2.90
91 92 2.429478 CCGACCCCGTTTAAACAATCT 58.571 47.619 18.07 0.00 0.00 2.40
92 93 1.135603 GCCGACCCCGTTTAAACAATC 60.136 52.381 18.07 8.23 0.00 2.67
93 94 0.883153 GCCGACCCCGTTTAAACAAT 59.117 50.000 18.07 0.15 0.00 2.71
94 95 0.465097 TGCCGACCCCGTTTAAACAA 60.465 50.000 18.07 0.00 0.00 2.83
95 96 0.885596 CTGCCGACCCCGTTTAAACA 60.886 55.000 18.07 0.00 0.00 2.83
96 97 0.886043 ACTGCCGACCCCGTTTAAAC 60.886 55.000 8.35 8.35 0.00 2.01
97 98 0.683973 TACTGCCGACCCCGTTTAAA 59.316 50.000 0.00 0.00 0.00 1.52
98 99 0.903942 ATACTGCCGACCCCGTTTAA 59.096 50.000 0.00 0.00 0.00 1.52
99 100 0.903942 AATACTGCCGACCCCGTTTA 59.096 50.000 0.00 0.00 0.00 2.01
100 101 0.675522 CAATACTGCCGACCCCGTTT 60.676 55.000 0.00 0.00 0.00 3.60
101 102 1.078708 CAATACTGCCGACCCCGTT 60.079 57.895 0.00 0.00 0.00 4.44
102 103 1.833787 AACAATACTGCCGACCCCGT 61.834 55.000 0.00 0.00 0.00 5.28
103 104 1.078708 AACAATACTGCCGACCCCG 60.079 57.895 0.00 0.00 0.00 5.73
104 105 0.252197 AGAACAATACTGCCGACCCC 59.748 55.000 0.00 0.00 0.00 4.95
105 106 1.066430 TCAGAACAATACTGCCGACCC 60.066 52.381 0.00 0.00 35.61 4.46
106 107 2.380084 TCAGAACAATACTGCCGACC 57.620 50.000 0.00 0.00 35.61 4.79
107 108 2.030946 GCATCAGAACAATACTGCCGAC 59.969 50.000 0.00 0.00 35.61 4.79
108 109 2.279741 GCATCAGAACAATACTGCCGA 58.720 47.619 0.00 0.00 35.61 5.54
109 110 2.009051 TGCATCAGAACAATACTGCCG 58.991 47.619 0.00 0.00 35.61 5.69
110 111 3.691118 TCTTGCATCAGAACAATACTGCC 59.309 43.478 0.00 0.00 35.61 4.85
111 112 4.952262 TCTTGCATCAGAACAATACTGC 57.048 40.909 0.00 0.00 35.61 4.40
112 113 8.671921 AGTTATTCTTGCATCAGAACAATACTG 58.328 33.333 2.97 0.00 35.57 2.74
113 114 8.798859 AGTTATTCTTGCATCAGAACAATACT 57.201 30.769 2.97 2.83 35.57 2.12
114 115 9.846248 AAAGTTATTCTTGCATCAGAACAATAC 57.154 29.630 2.97 0.88 35.57 1.89
115 116 9.844790 CAAAGTTATTCTTGCATCAGAACAATA 57.155 29.630 2.97 0.00 35.57 1.90
116 117 8.579006 TCAAAGTTATTCTTGCATCAGAACAAT 58.421 29.630 2.97 0.00 35.57 2.71
117 118 7.939782 TCAAAGTTATTCTTGCATCAGAACAA 58.060 30.769 2.97 0.00 35.57 2.83
118 119 7.509141 TCAAAGTTATTCTTGCATCAGAACA 57.491 32.000 2.97 0.00 35.57 3.18
119 120 7.327032 GGTTCAAAGTTATTCTTGCATCAGAAC 59.673 37.037 2.97 0.00 35.57 3.01
120 121 7.014134 TGGTTCAAAGTTATTCTTGCATCAGAA 59.986 33.333 3.38 3.38 37.20 3.02
121 122 6.489700 TGGTTCAAAGTTATTCTTGCATCAGA 59.510 34.615 0.00 0.00 36.40 3.27
122 123 6.583806 GTGGTTCAAAGTTATTCTTGCATCAG 59.416 38.462 0.00 0.00 36.40 2.90
123 124 6.040278 TGTGGTTCAAAGTTATTCTTGCATCA 59.960 34.615 0.00 0.00 36.40 3.07
124 125 6.446318 TGTGGTTCAAAGTTATTCTTGCATC 58.554 36.000 0.00 0.00 36.40 3.91
125 126 6.403866 TGTGGTTCAAAGTTATTCTTGCAT 57.596 33.333 0.00 0.00 36.40 3.96
126 127 5.843673 TGTGGTTCAAAGTTATTCTTGCA 57.156 34.783 0.00 0.00 36.40 4.08
138 139 5.359576 AGACATGTAAGCTTTGTGGTTCAAA 59.640 36.000 3.20 0.00 42.79 2.69
139 140 4.887071 AGACATGTAAGCTTTGTGGTTCAA 59.113 37.500 3.20 0.00 37.56 2.69
140 141 4.460263 AGACATGTAAGCTTTGTGGTTCA 58.540 39.130 3.20 0.00 37.56 3.18
141 142 4.083271 GGAGACATGTAAGCTTTGTGGTTC 60.083 45.833 3.20 1.20 37.56 3.62
142 143 3.821033 GGAGACATGTAAGCTTTGTGGTT 59.179 43.478 3.20 0.00 39.89 3.67
143 144 3.181445 TGGAGACATGTAAGCTTTGTGGT 60.181 43.478 3.20 0.00 33.40 4.16
144 145 3.411446 TGGAGACATGTAAGCTTTGTGG 58.589 45.455 3.20 0.00 33.40 4.17
145 146 5.048504 ACATTGGAGACATGTAAGCTTTGTG 60.049 40.000 3.20 4.03 42.32 3.33
146 147 5.072741 ACATTGGAGACATGTAAGCTTTGT 58.927 37.500 3.20 2.43 42.32 2.83
147 148 5.413833 AGACATTGGAGACATGTAAGCTTTG 59.586 40.000 3.20 0.00 42.32 2.77
148 149 5.413833 CAGACATTGGAGACATGTAAGCTTT 59.586 40.000 3.20 0.00 42.32 3.51
149 150 4.940046 CAGACATTGGAGACATGTAAGCTT 59.060 41.667 3.48 3.48 42.32 3.74
150 151 4.223700 TCAGACATTGGAGACATGTAAGCT 59.776 41.667 0.00 0.00 42.32 3.74
151 152 4.507710 TCAGACATTGGAGACATGTAAGC 58.492 43.478 0.00 0.00 42.32 3.09
152 153 4.569966 GCTCAGACATTGGAGACATGTAAG 59.430 45.833 0.00 0.00 42.32 2.34
153 154 4.223700 AGCTCAGACATTGGAGACATGTAA 59.776 41.667 0.00 0.00 42.32 2.41
154 155 3.771479 AGCTCAGACATTGGAGACATGTA 59.229 43.478 0.00 0.00 42.32 2.29
155 156 2.570752 AGCTCAGACATTGGAGACATGT 59.429 45.455 0.00 0.00 42.32 3.21
156 157 3.263489 AGCTCAGACATTGGAGACATG 57.737 47.619 0.00 0.00 42.32 3.21
157 158 4.029520 ACTAGCTCAGACATTGGAGACAT 58.970 43.478 0.00 0.00 42.32 3.06
158 159 3.435275 ACTAGCTCAGACATTGGAGACA 58.565 45.455 0.00 0.00 39.83 3.41
159 160 4.464069 AACTAGCTCAGACATTGGAGAC 57.536 45.455 0.00 0.00 32.87 3.36
160 161 4.825422 CAAACTAGCTCAGACATTGGAGA 58.175 43.478 0.00 0.00 32.87 3.71
161 162 3.373439 GCAAACTAGCTCAGACATTGGAG 59.627 47.826 0.00 0.00 0.00 3.86
162 163 3.008375 AGCAAACTAGCTCAGACATTGGA 59.992 43.478 0.00 0.00 42.18 3.53
163 164 3.341823 AGCAAACTAGCTCAGACATTGG 58.658 45.455 0.00 0.00 42.18 3.16
164 165 5.174395 AGTAGCAAACTAGCTCAGACATTG 58.826 41.667 0.00 0.00 45.26 2.82
165 166 5.413309 AGTAGCAAACTAGCTCAGACATT 57.587 39.130 0.00 0.00 45.26 2.71
166 167 5.413309 AAGTAGCAAACTAGCTCAGACAT 57.587 39.130 0.00 0.00 45.26 3.06
167 168 4.873746 AAGTAGCAAACTAGCTCAGACA 57.126 40.909 0.00 0.00 45.26 3.41
168 169 5.956642 AGTAAGTAGCAAACTAGCTCAGAC 58.043 41.667 0.00 0.00 45.26 3.51
169 170 6.657966 TGTAGTAAGTAGCAAACTAGCTCAGA 59.342 38.462 0.00 0.00 45.26 3.27
170 171 6.853720 TGTAGTAAGTAGCAAACTAGCTCAG 58.146 40.000 0.00 0.00 45.26 3.35
171 172 6.829229 TGTAGTAAGTAGCAAACTAGCTCA 57.171 37.500 0.00 0.00 45.26 4.26
172 173 9.798994 TTAATGTAGTAAGTAGCAAACTAGCTC 57.201 33.333 0.00 0.00 45.26 4.09
177 178 8.674607 GGCAATTAATGTAGTAAGTAGCAAACT 58.325 33.333 0.00 0.00 41.49 2.66
178 179 8.674607 AGGCAATTAATGTAGTAAGTAGCAAAC 58.325 33.333 0.00 0.00 0.00 2.93
179 180 8.801882 AGGCAATTAATGTAGTAAGTAGCAAA 57.198 30.769 0.00 0.00 0.00 3.68
180 181 8.801882 AAGGCAATTAATGTAGTAAGTAGCAA 57.198 30.769 0.00 0.00 0.00 3.91
181 182 8.801882 AAAGGCAATTAATGTAGTAAGTAGCA 57.198 30.769 0.00 0.00 0.00 3.49
208 209 3.297134 AGCACCTCTCTGGAAACAAAA 57.703 42.857 0.00 0.00 42.06 2.44
211 212 3.297134 AAAAGCACCTCTCTGGAAACA 57.703 42.857 0.00 0.00 39.71 2.83
212 213 5.003804 TCATAAAAGCACCTCTCTGGAAAC 58.996 41.667 0.00 0.00 39.71 2.78
216 217 6.261826 CCTATTTCATAAAAGCACCTCTCTGG 59.738 42.308 0.00 0.00 42.93 3.86
241 242 3.182572 CAGCGCAACGATTAATCTCTACC 59.817 47.826 11.47 0.00 0.00 3.18
243 244 3.181479 ACCAGCGCAACGATTAATCTCTA 60.181 43.478 11.47 0.00 0.00 2.43
279 280 1.129998 GCATAGCAGCTGCATTATCGG 59.870 52.381 38.24 20.70 45.16 4.18
280 281 1.129998 GGCATAGCAGCTGCATTATCG 59.870 52.381 38.24 21.37 45.16 2.92
313 314 2.753452 TCTATCCGCTTCAACGTCTCTT 59.247 45.455 0.00 0.00 0.00 2.85
347 348 2.996168 GATAATGCGGCTCACGGGCT 62.996 60.000 0.00 0.00 44.51 5.19
389 390 3.258622 AGTTGTTGTAGCTGTAGACTCCC 59.741 47.826 0.00 0.00 0.00 4.30
560 562 2.118951 AACCCCCGTCTCCGAAGA 59.881 61.111 0.00 0.00 35.63 2.87
567 569 3.728373 GGCATCCAACCCCCGTCT 61.728 66.667 0.00 0.00 0.00 4.18
583 585 4.220693 TGTTACAAGATGGTGAGGATGG 57.779 45.455 0.00 0.00 0.00 3.51
606 608 6.419484 TCATGTTCTAGAAAAGTCAGGTCA 57.581 37.500 6.78 0.00 0.00 4.02
652 654 4.630894 TCTGAACAGAAAACATTTGCGT 57.369 36.364 1.79 0.00 33.91 5.24
670 672 4.813161 TGCTTCTGAACTTCTGAACTTCTG 59.187 41.667 6.94 9.48 32.21 3.02
682 684 8.629158 TGTAACAATTATTTGTGCTTCTGAACT 58.371 29.630 3.86 0.00 45.30 3.01
683 685 8.690840 GTGTAACAATTATTTGTGCTTCTGAAC 58.309 33.333 3.86 0.00 45.30 3.18
684 686 7.865385 GGTGTAACAATTATTTGTGCTTCTGAA 59.135 33.333 3.86 0.00 45.30 3.02
685 687 7.367285 GGTGTAACAATTATTTGTGCTTCTGA 58.633 34.615 3.86 0.00 45.30 3.27
686 688 6.586082 GGGTGTAACAATTATTTGTGCTTCTG 59.414 38.462 3.86 0.00 45.30 3.02
687 689 6.295067 GGGGTGTAACAATTATTTGTGCTTCT 60.295 38.462 3.86 0.00 45.30 2.85
688 690 5.867174 GGGGTGTAACAATTATTTGTGCTTC 59.133 40.000 3.86 0.00 45.30 3.86
689 691 5.279758 GGGGGTGTAACAATTATTTGTGCTT 60.280 40.000 3.86 0.00 45.30 3.91
696 698 4.709886 GCTTCAGGGGGTGTAACAATTATT 59.290 41.667 0.00 0.00 39.98 1.40
704 706 0.909623 GCTAGCTTCAGGGGGTGTAA 59.090 55.000 7.70 0.00 0.00 2.41
705 707 0.252513 TGCTAGCTTCAGGGGGTGTA 60.253 55.000 17.23 0.00 0.00 2.90
711 713 0.615331 TCCAGTTGCTAGCTTCAGGG 59.385 55.000 17.23 11.00 0.00 4.45
714 716 3.181486 CGTAGATCCAGTTGCTAGCTTCA 60.181 47.826 17.23 0.00 0.00 3.02
715 717 3.181485 ACGTAGATCCAGTTGCTAGCTTC 60.181 47.826 17.23 8.85 0.00 3.86
716 718 2.761208 ACGTAGATCCAGTTGCTAGCTT 59.239 45.455 17.23 0.00 0.00 3.74
718 720 2.873133 ACGTAGATCCAGTTGCTAGC 57.127 50.000 8.10 8.10 0.00 3.42
719 721 5.066117 TCAGTTACGTAGATCCAGTTGCTAG 59.934 44.000 0.00 0.00 0.00 3.42
720 722 4.945543 TCAGTTACGTAGATCCAGTTGCTA 59.054 41.667 0.00 0.00 0.00 3.49
722 724 3.858238 GTCAGTTACGTAGATCCAGTTGC 59.142 47.826 0.00 0.00 0.00 4.17
725 2245 3.128938 GCAGTCAGTTACGTAGATCCAGT 59.871 47.826 0.00 0.00 0.00 4.00
729 2249 4.373348 AAGGCAGTCAGTTACGTAGATC 57.627 45.455 0.00 0.00 0.00 2.75
735 2255 3.326747 AGCTTAAAGGCAGTCAGTTACG 58.673 45.455 0.00 0.00 34.17 3.18
750 2270 5.047590 TGCAGCAGTACAAGTAGTAGCTTAA 60.048 40.000 0.00 0.00 32.19 1.85
760 2280 0.179048 TGCACTGCAGCAGTACAAGT 60.179 50.000 27.80 1.84 43.43 3.16
761 2281 0.236711 GTGCACTGCAGCAGTACAAG 59.763 55.000 26.94 16.59 46.69 3.16
762 2282 0.463474 TGTGCACTGCAGCAGTACAA 60.463 50.000 26.94 15.70 46.69 2.41
763 2283 1.145819 TGTGCACTGCAGCAGTACA 59.854 52.632 27.80 25.02 46.69 2.90
764 2284 1.159713 TGTGTGCACTGCAGCAGTAC 61.160 55.000 27.80 22.57 46.69 2.73
765 2285 1.145819 TGTGTGCACTGCAGCAGTA 59.854 52.632 27.80 11.02 46.69 2.74
766 2286 2.124612 TGTGTGCACTGCAGCAGT 60.125 55.556 23.11 23.11 46.69 4.40
767 2287 2.330393 GTGTGTGCACTGCAGCAG 59.670 61.111 21.54 21.54 46.69 4.24
804 2324 2.017049 GGTGCCTGTTAATGCGAGATT 58.983 47.619 0.00 0.00 0.00 2.40
866 2391 4.062991 GGTTTCAACTGTTACGTGGATCT 58.937 43.478 0.00 0.00 0.00 2.75
950 2475 0.737715 AAAGAGATCGGTCACGCTGC 60.738 55.000 0.00 0.00 40.69 5.25
956 2481 3.119316 GCTGAAGAGAAAGAGATCGGTCA 60.119 47.826 0.00 0.00 0.00 4.02
1007 2532 2.358737 CCGACTGGCTTGTGGGTC 60.359 66.667 4.66 0.00 32.25 4.46
1029 2554 4.521075 ATCAGGATGGTGAACGCG 57.479 55.556 3.53 3.53 36.16 6.01
1093 2624 4.394712 CTCCTGGCGGCTCCGTTT 62.395 66.667 11.43 0.00 42.09 3.60
1102 2633 2.503061 CAGGTGGATCTCCTGGCG 59.497 66.667 21.43 4.95 46.03 5.69
1123 2654 4.436998 CAGGCCGACGGTCACCTC 62.437 72.222 22.54 0.00 0.00 3.85
1153 2684 0.615331 TGGTAGTAGTCGTCCTCCGT 59.385 55.000 0.00 0.00 37.94 4.69
1158 2689 0.813821 GGTGGTGGTAGTAGTCGTCC 59.186 60.000 0.00 0.00 0.00 4.79
1168 2699 2.285024 GGCGGTAGTGGTGGTGGTA 61.285 63.158 0.00 0.00 0.00 3.25
1171 2702 2.047274 CAGGCGGTAGTGGTGGTG 60.047 66.667 0.00 0.00 0.00 4.17
1174 2705 2.125512 GAGCAGGCGGTAGTGGTG 60.126 66.667 0.00 0.00 0.00 4.17
1233 2764 4.119862 GCATAGAAATGTAGCGGTTCAGA 58.880 43.478 0.00 0.00 35.38 3.27
1261 2805 1.202200 ACACGATAGAGAAGCGTCAGC 60.202 52.381 1.61 0.00 41.81 4.26
1316 2862 2.125512 GGTCTCGAACATGGCGCT 60.126 61.111 7.64 0.00 0.00 5.92
1320 2866 3.554692 GCGCGGTCTCGAACATGG 61.555 66.667 8.83 0.00 39.00 3.66
1335 2881 3.121030 CGCTGAACCTCAAGGGCG 61.121 66.667 0.29 2.18 40.27 6.13
1340 2886 1.192146 AGGTAGGCGCTGAACCTCAA 61.192 55.000 18.90 0.00 39.46 3.02
1410 2956 2.823154 GCCTAGCTAGGATCGATGAAGT 59.177 50.000 38.74 0.00 46.63 3.01
1418 2964 8.877864 ATATCTATGTATGCCTAGCTAGGATC 57.122 38.462 38.74 23.96 46.63 3.36
1419 2965 9.667607 AAATATCTATGTATGCCTAGCTAGGAT 57.332 33.333 38.74 28.56 46.63 3.24
1420 2966 8.918116 CAAATATCTATGTATGCCTAGCTAGGA 58.082 37.037 38.74 24.79 46.63 2.94
1421 2967 8.918116 TCAAATATCTATGTATGCCTAGCTAGG 58.082 37.037 32.12 32.12 46.42 3.02
1451 2997 6.366877 GCTCAACCAGAACGTATGTAACTTAA 59.633 38.462 0.00 0.00 0.00 1.85
1456 3002 4.242475 CTGCTCAACCAGAACGTATGTAA 58.758 43.478 0.00 0.00 34.77 2.41
1485 3031 4.410400 GAACTCCCAGCACCCCCG 62.410 72.222 0.00 0.00 0.00 5.73
1495 3041 1.891616 GTCCCTCTGACGAACTCCC 59.108 63.158 0.00 0.00 33.49 4.30
1530 3076 4.338539 GTCAGTGCCCGTCGTCGT 62.339 66.667 0.71 0.00 35.01 4.34
1532 3078 2.733593 GTGTCAGTGCCCGTCGTC 60.734 66.667 0.00 0.00 0.00 4.20
1538 3084 3.357079 CTTGCGGTGTCAGTGCCC 61.357 66.667 0.00 0.00 0.00 5.36
1539 3085 2.591715 ACTTGCGGTGTCAGTGCC 60.592 61.111 0.00 0.00 0.00 5.01
1547 3093 1.462283 CTCTGTTGATCACTTGCGGTG 59.538 52.381 0.00 3.61 46.60 4.94
1560 3106 0.319383 AGCTGCTCACGTCTCTGTTG 60.319 55.000 0.00 0.00 0.00 3.33
1579 3125 3.360867 TGTGTTGCTTCCTTCCTTTGAA 58.639 40.909 0.00 0.00 0.00 2.69
1598 3144 8.138074 GTGAAAGAGAAAAAGGAAAGCTAATGT 58.862 33.333 0.00 0.00 0.00 2.71
1758 3316 9.866936 TTAAAACTGAACATGTTACGTATTGTC 57.133 29.630 11.95 0.00 0.00 3.18
1759 3317 9.654417 GTTAAAACTGAACATGTTACGTATTGT 57.346 29.630 11.95 0.00 0.00 2.71
1762 3320 7.094677 GGGGTTAAAACTGAACATGTTACGTAT 60.095 37.037 11.95 7.03 0.00 3.06
1911 3470 4.572389 AGAATTTTTCGTGAGATGATCCCG 59.428 41.667 0.00 0.00 41.60 5.14
2065 3628 0.734889 GAGACATGCCGGGTTCATTG 59.265 55.000 2.18 0.00 0.00 2.82
2406 4046 5.574188 ACTAATTCAGAAACCAATGCTCCT 58.426 37.500 0.00 0.00 0.00 3.69
2455 4095 5.764686 TGTTAAGTGTGATCTGTCAAGCATT 59.235 36.000 0.00 0.00 35.80 3.56
2485 4125 5.654603 AGGTACGTATTGTCTTGTGATGA 57.345 39.130 0.00 0.00 0.00 2.92
2501 4141 4.451629 AGTCAAGGTCATACAAGGTACG 57.548 45.455 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.