>input_sequence_76597
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--------------------------------------------ATGGCGAGACCCACAAGCCAGTCGGTGGCCGCGTTC
ACCATCCTGATGCTCGCCGTGGCCA------CCCTCGCCATCGCCCAGGCGCCGCCGCCGCCCAAACGGAGCCGCCAGGA
GATCCACCTGTTCGAGGTGACCGTCGGCCTGGCGGCCGCCGCCACGGAGGACGACTACTACCACCACCACTACCGCCTGC
TCGCCACCGTGGTCGGCGGGTCGGTCGCCTCGCCCCTGTTCCTTCTGAACCGCT-------------ACATTTCTATGCC
ATTTGCTGACGCTTCTCTATCGTGTTTTCTCTC--AAACCTCAAGCATCGAGGCCGCACGGAGCGCCATGTTCGAGACCG
CGCCCTTGAGGTTCAGCGCCTACCTCACCAACAACCAGGCCCGCAGACTATCAAGTGAGTGAACATTCCTGGCTTACTTC
ATCGATCCTAGCTAGGCATACATAGATATTTGATGTTTAAGTTACATACGTTCTGGTTGAGCAGGAGTCACGGGGGTGCT
GGGAGTTCGTCAGAGGGACGACCCTGTGCCCACGGACGACGACGGGCACTGA----------------------------
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>chr2B_1_TraesCS2B01G467000
CACAGTAGTGCAGTACCTCAGCATGCATGCTAGATTATATTACTTCTTTTTAGCATCAAGTAATTTCAGCATAAGATTGA
TTGTTTAATTCAGATTGTTTAAACGGGGTCGGCAGTATTGTTCTGATGCAAGAATAACTTTGAACCACAAAGCTTACATG
TCTCCAATGTCTGAGCTAGTTTGCTACTTACTACATTAATTGCCTTTTTTTTGTTTCCAGAGAGGTGCTTTTATGAAATA
GGGTAGAGATTAATCGTTGCGCTGGTTTTGTTTAATGCTCCGATAATGCAGCTGCTATGCCCAGTCGGAACACAAGAGAC
GTTGAAGCGGATAGAGGAGTTGCCCCCAGCCCGTGAGCCGCATTATCGTCTGAAGACGTTACTGATGACGGG-AGTCTAC
AGCTACAACAACTTCTTTGTTCTGGCACTGCATTATGCTCGAACCGCCATGGCGCTCGAGCGCATGGTCATCGATCCGGA
GGCGAGGAAGAGGTATGTCGCGACTCGTGACGCGGTAGAAGAGAACGCGGTCCATGAGGGCCGACGGATGGCCGATGAAC
ATCTTCGGAGACGGGGGTTGGATGCCATCCTCACCATCTTGTAACATTGACCTGACTTTTCTAGAACATGATATCATGAC
TCGTTTGTAAAATACGCAAATGTTTTCTGTTCAGAAGTTCAGAAGTTCAGAAGCACAAATAATTGTTACACCCCCTGAAG
CTAG----------------------------------------------------------------------------
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--CAACTGGATCTACGTAACTGACTGCCTTTAAGCTACTACTTGTACTGCTGCAGTGCACACACTGGAGTTGTGCATGTC
TTAAATCTCGCATTAACAGGCACCG-AAAACGTATGTCGTAATGACCATTGAACCATCTTA----AAATGAGATCCACGT
AACAGTTGAAACCCCCCGGACGAGAGCGCCTATAAAACCCTCCCAGTTCACGTCCCTTTTCCCCAAGATCACCAGCAGCG
TGACCGATCTCTTTCTCTTCAGCTGCCGCAACGCACCGGCAACCATGGCGAGACCCACAAGCCAGTCGGTGGCCGCGTTC
ACCATCCTGATGCTCGCCGTGGCCA------CCCTCGCCATCGCCCAGGCGCCGCCGCCGCCCAAACGGAGCCGCCAGGA
GATCCACCTGTTCGAGGTGACCGTCGGCCTGGCGGCCGCCGCCACGGAGGACGACTACTACCACCACCACTACCGCCTGC
TCGCCACCGTGGTCGGCGGGTCGGTCGCCTCGCCCCTGTTCCTTCTGAACCGCT-------------ACATTTCTATGCC
ATTTGCTGACGCTTCTCTATCGTGTTTTCTCTC--AAACCTCAAGCATCGAGGCCGCACGGAGCGCCATGTTCGAGACCG
CGCCCTTGAGGTTCAGCGCCTACCTCACCAACAACCAGGCCCGCAGACTATCAAGTGAGTGAACATTCCTGGCTTACTTC
ATCGATCCTAGCTAGGCATACATAGATATTTGATGTTTAAGTTACATACGTTCTGGTTGAGCAGGAGTCACGGGGGTGCT
GGGAGTTCGTCAGAGGGACGACCCTGTGCCCACGGACGACGACGGGCACTGACACCGCAAGTGATCAACAGAGACGTGAG
CAGCTTCAAAGGAAGGAAGCAACACATTAGCTTTCCTTTTTCTCTTTCACAATAA---AAAAAGTGCCGCGGCCTTAATA
TTTGTGT---------TATACTGAAATCCAGCAAGCTTTGCTGTTATAAACCTCTCGCGCAAAACTGACGATCCTCGATG
TAAAAAACAAGATGATCTCCGGGGTTCATCAATACGACAATACGTAACATGTTCAGTTTTAACCCCGCAAAAAAAAAATG
TTCGGTTTCAAAAAAGAGAGTTGTAAGTGTGACTGTCAATACTATCTGGAACTGTTAAACGGCAGAGGACAAAAACCTGT
TCGACAG-AGCCAAAACCAGTGCTCGCCCCGGGATCATCTCACGAAAA-ATTCTGATTCATGATCGTCGCTCTTCTTTGG
TCCAG---CCTCTCTAGACAAAGTCGGGGTCGACAGTGTGCTGCTTGCACCCTCGGGGGCCATAGTGCTCCTTGCTCTTT
CGCACCACCGTGTGGCACAGAGCGCAGCAATGAACCCGGCATGTCTCGCAGAAGATGTGGTTGTTGTTCCCAACCTGCTT
AGATCAGAGACT--GTCTTCATCCACCAGAATCATCAAGAG-AAAAAAG-AGTAGAAAGCACTAGAGCTATCTTCAGAAA
ACACTACTGAAAAATATCACTATTCCATACATGATAC-------------------------------------------
------------------------------AGTATATGGAAGCCACCAAACCTTTACCTTGAAATTCGGCTGGCGGCAAC
CCGGGCACGGATGCGCTCTGGACAGTGCCAGTTTCAGCTCTTTCTGCATGTTTCTGACGACATCATTCACTTCCACCTTC
ACTCTCAGCTTCTCCCTATCGATTTTGCATTGTTCACTGTCAAAAAGGAGCATTGGTTTCTGAATTAGTTATCCAGAGAA
TAGATATGCTACATAATGCTTGACAGATCACACTTAACAAGGGGTCATCACAAGACAATACGTACCTTGTATGACCTTGA
CTTGATGGCTTGCCACAGGCATAACA
>chr2D_189
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----------------------------TACTTCATTAATTGCCCTTTCTTAATTTTCAGAGAGGTGCTTTTATGAAATA
GCGATT-GATTAATTGTTGCACTGGTTTTGTTTACTGCTTTGATAATACAGCTGCTATGCCCAGTCGGAACACGAGAAAC
GTTGAAGCGGATAGAGGAGTTGCCCCCGGCCCGTGAGCCGCATTATCGTCTGAAGACGTTACTGATGAC-GG-AGTCTAC
AGCTACAACAACTTCTTTGTTCTGGCACTGCATTATGCTCGAACCGCCATGGCGCTCGAGCGCATGGTCATCGATCCGGA
GGCGAGGAAGAGGTATGTCGCGACTCGTGACGCGGTAGAAGAGAACGCGGTCCATGAGGGCCGACGGATGGCCGATGAAC
ACCTTCGGGGACGGGGGTTGGATGGCATCCTCACCATCTTGTAACATCGACCTGACTTTTCTGGAACATGATATCGTGAC
TCGTTTGTAAAATTCGCAAATGTTTTCTGTTAAGAAGTTCACA--------AGCACAGATAATTGCCACACCACCCTGAA
AAACGGCCAGCTGAATCTATGTAACTT-----------------------------------------------------
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------------------------------------------------------TTCTTTTTTTGCGGGGG---------
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---AGCTGAATCTATGTAACTGACTGCCTGTAAGCTACTTG---------TGCAGTGCACACACTGCAGTTGTGCATGTC
TTAGATCTCGCATTAACAGGCACCG-AAAACGTCAGCCGTAATGACCATTGAACCATCTTA----AAATGGGATCCACGT
AACAGTTGAAACCCCCCGGACGAGAGCGCCTATAAAACCCTCCCAGTTCACGTCCCTTTCCCCCAAGATCACCAACAGCG
AGACCGATCTCTTTCTCTTCAGCTACCGCAACGCACCGGCAACCATGGCGAAACCCACAAGCCAGTCGGCGGCAGCGCTC
GCCATCCTGATGCTCGCCGTGGCCA------CCCTCGCTGTCGCCCAGGCGCCGCCGCCGCCCCAACGGAGCGGCCAGGA
GCGTCACCTGTTCCAGGTGACGGTTCGCGAGGTGGACGGCGCCGTGGAAGACGACTACAACTACAA---------CCTGC
TCGGCACCGTGCTCGGCGGGTTGGTCGCCTCGCCC-TGTTCCTCCTGAACCCCTACCTCTCCAGGCTACATTTCTATGCC
ATTTTCTGACGCTTCTCTATCTTGTTTTCTCTCTGAAACCTCAAGCTACGAGGCCGCACGGGGCGTCATGTTTGAGACCG
AGCCCCTGAGGTTCAGCGCCTACCTCACCAACAACCAGGCCCGCAGGCTATCAAGTGAGTGAACATTCCTGGCTTGCTTC
ATC----CTAGCTAGGAAAACAGAGATATTTGATGTGTAAG-TATATACGTTCTGGTTGAGCAGGAGTCAAGGGGGTGCT
CGGAGTTCGTCAGAGGGACGATCCTGTGCCCAGGGCCAA------GCACTGATACCGCAGGTGATTAACAGAGACATGAG
CAGCATCAAAGGAAGGAAGCAACGCATTAGCTTTCCTTTT-CTCTTTCACAAT-----AAAAAGTGCCGCGGCCTTAATA
TTTGGAAACGTTGTGCTATACTGAAATCCAGCAAGCTTTGCTGCTATAAACCTCTCGCACAAAACTGACGATCCTCGATG
TAAA-AACAAGATGATCTACGGTGT-------------------------------------------------------
-TCGGTTTCAAAAAAGAGAGTTGTAAGTGTGACTGTCAATACTATCTGAAACTGTTAAACGGCAGAGGACAAAAACCTGT
TTGACATTAGCCAAAACCAGTGCTCGCCCTGGCATCATCTCATGAAAAAAGTCTGATTCATGATCGTCGCTCTTCTTTGG
TCCAG---CCTCTCTAGACGAAGTCGGGGTCAACAGTGTGCTGCTTGCACCCTCGGGGGCCGTAGTGCTCCTTGCTCTTT
CGCACCACCGTGTGGCACAGAGCGCAGTAATGAACCCGGCATGTCTCGCAGAAGATGTGGTTGTTGTTCCCAACCTGCTT
AGATCAGAGACT--GTCTTCATCCACCAGAATCATCAAGAGAAAAAAAG-AGTAGAAAGCACTAGAGCTATCTTCAGAAC
ACACTACTGAAAAATATCACTATTCCATACATGATAC-------------------------------------------
------------------------------AGTATATGGAAGCCACCAAACCTTTACCTTGAAATTCGGCTGGCGGCAAC
CCGGGCACGGATGCGCTCTGGACAGTGCCAGTTTCAGCTCTTTCTGCATGTTTCTGACAACATCATTCACTTCTACCTTC
ACTCTTAGCTTCTCCCTATCGATTTTGCATTGTTCACTGTCAAAAGGGAGCATTGGTTTCAGAATTAGTTATCCAGAGAA
TAGATATGCTACATGATGCTTGACAGATCACACTTAACAAGGGGACATCACAAGATAATATGTACCTTGTATGACCTTGA
CTTGATGGCTTGCCACAGGCATAACA
>chr2A_245
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----AGAGATTAATCGTTGCGTTTGTTTTGTTTAATGCTTTGATAATGCAGCTGCTATGCCCAGTCGGAACATGGGAGAC
GTTGAAGCGGATAGAGGAGTTGCCCCCGGCCCGTGAGCTGCATTATCGTCTGAAGACGTTACTGATGAC-GGGAGTCTAT
GGCTACAACAACTTCTTTGTTCTGGCACTGCATTATGCTCGAACCGCCACGGCGCTCGAGCGCATGGTCATCC------A
GGCGAGGAAGAGGTATGTCTTGACTCGTGACGCGGTAGAAGAGAACGCGGTCCATGGGGGCCGACGGATGGCCAATGAAC
ACCTTCGGGGACGGGGCTTGGATGGCATCTTCACCATCTTGTAACATCGACCTGACTTTTCTGGAACATGATATCATGAC
TCATTTGTAAAATTCGCAAATGTTTCCTGTTAAGAAGTTCAGA--------AGCACAG-TAATTGCCACACCACCCTGAA
AAACTGCCAGCTGAGAGAGAGAAAAAGTCGAATCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCGCGCGTCGGGCC
TCCTCCCTCCGGGCTCCCCCCTCCCTTCTTCCTTCTCGCCGCCGTAGCCGGTGCCCGCGGCCGGCTTGGCCCTGGGGCTG
CTGGTGGCGGCGGCCTCCTGGCCCTTCCCCTCCTGGTCGCTCTTCGGCGCGGGCGGAGCGGCTCCGGGGGGTGCATCTAG
GCGGTGGGGGGCTGGCGTGGCGGCGGGGCTCCGTGGCGCATGCAGGCGAGCTACTGGGCGGCGGCGCAGCCGTTGGCGGC
GGGGCGACGCGACGGCGGGATCTGGCGTTGTCCGCTCGGCCCAGATCTGGGCCCTTCGGGCCCCATCTGGGCCTGAGCGG
GCCGGCAGCGGGGATGGCTCCGGTGTGGCTTCTGGGAGGCGGGGGAGATGCGACGTGTGGCTGGGTGCCGGCGGCGATGA
CGCCGGCCTACCGCATCGCGGCCGGCGGGGCTTAACGGGCCTGGCTGGGCCAGGGGTGGCCCGGCATGCCCCGCTACCGC
ATCCGGACGGCTACCGCGACGGTGCCGGAGGCACGGGCCTCCCGCATGACGGCAGTGGAGGTGGTTCCCTCCCGCTCGGC
GTCGATGTTGCTGCTCCCGTCGTGGTGAGCTTCTCTCCGGTCCTCTTGGCCTCGTGGTGGTGTTCGTAGTGAGGCAGCGT
GGGTGGTGGCGCTACTGCGTTGGCGCATGGTGATGGGCGGTGGTTAGGCGGTCGGTTCGGTTCGGTTGGGCGGTTGGGGT
TGGAATGCGGGAGAAATCCCTACCGGCTTCGGCTCCGACGCGGTGACACCTGCGGATGCCACCATTCCTCCCTGGAGGGT
GCCGGTGGTATCCACCCCCCACCTCCCTTCGCGTGCCCGGGGAAATCTGAGGACTCGTCCGGGCAGCAGCGTCGTCGGCG
TCGCATCCCTTCTTGGAGGTGCTGCTTGGTACGCGGCGGATCAAAGCCTCGGTCTGTAGTGTTTTGTTTCCGGTGGGCGC
CGCGGTGGCGGGTTATCCGCGCTTTACCAAGCTGCCGTAGTTGGCATTTGTTTCTTCTTTTTTTTCTTTTGATGTGTTGT
GCTGCTCGCCACAGTGTTATCTGTACTCGGTATTGGTTGCTTTGGAATACAAAGCGGGGAACCCTTTTTCGATAAAAACT
GCCAGCTGAATCTATGTAACTGACTGCCTGTAAGCTACTTG---------TGCAGTGCACACACTGGAGTTGTGCATGTC
TTAGATCTCGCATTAACAGGCACTGAAAAACGTCAGTCGTAATGACCATTGAACCAACCACTGTTAAATGGGATCCACGT
AACAGTTGAAACCTCCCAGACGAGAGCGCCTATAAAACCCCCCCAGTTCACGTCCCTTTTCCCCAAGATCACCAACAGCG
ACACCGATCTCTTTCTCTTCAGCTGCCGCAACGCACCGGCAACCATGGCGAAACCCACAAGCCAGTCGGCGGCAGCGCTC
GCCGTCCTGATGCTCGCCGTGGCCACTCTCACCCTCGCCGTCGCCCAGGCGCCACCGCCGCCCCAACGGAGCGGCCAGGA
GATCCACCTGTTCCAGGTGACGGTTCGCCAGGTGGACGGCGCCGCGGAAGACGACTAC----------------------
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>chr2A_1175
C-------------------------------------------------------------------------------
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--------------------------------------------------------ACAACTACAA---------CCTGC
TCGGTACCGTGCTCGGCAGGTCGGTCGCCTCGCCC-TGTTCCTCCTGAACCCCTACCTCTCCAGGCTACATTTCCATGCC
ATTTTCTGACGCTTCTCTATCGTGTTTTCTCTCTGAAACCTCAAGCTACGAGGCCGCATGGGAAGTCATGTTCGAGACCG
AGCCCCTGAGGTTCAGCGCCTACCTCACCAACAACCAGGCCCGCAGACTATCAAGTGAGTGAACATTCCTGGCTTGCTCC
ATC----CTAGCTAGGAATACAGAGATATTTGATGTGTGAG-TACATACGTTCTGGCTGAGCAGGAGTCAAGGGGGTGCT
CGGAGTTCGTCAGAGGGACGATCCTGTGCCCAGGGCCAA------GCACTGATACCGCAAGTGATTAACGGAGGTGTGAG
CAGCATCAAAGGAAGGGAGCAACGCAT-AGCTTTCCTTTTACTCTTTCACAATCAAAAAAAAAGTGCCGCGGCCTTAATA
TTTGTGT---------TATACTGAAATCCAGCAAGCTTTGCTGTTATAAACCTCTCGCACAAAACTGACGATCCTCGATG
TAAAAAACAAAATGATCTCCGGGGTTCATCAATACCCCAGTACGTAACATGTTCGGTTTTAACCCCGCAAAAG-AAAATG
TTCGGTTTCAAAAAAGAGAGTTGTAAGTGTGACTGTCAATACTATCTGGAACTGTTAAACGGCGGAGGACAAAAACCTGT
TCGACAG-AGCCAAAACC--------CCCTGGGATCATCTCCCG-AAAAATTCTGATTCATGGTCGTCGCTCTTCTTTGG
TCCAGCAGCCTCTCTAGACAAAGTCGGGGTCGACGGTGTGCTGCTTGCACCCTTGGGGGCCGTAGTGCTCCGTGCTCTTG
CGCACCACCGTGTGGCACAGAGCGCAGTAGTGAACCCGGCATGTCTTGCAGAAGATGTGGTTGTTGTTCCCAACTTGCTT
AGATCAGAGACT--GTTTTCATCCACCAGAAGCATCAAGAG-AAAAAAGGAGTAGAAAACACTAG-GCTATCTTCAGAAC
ACACTACTGAAAAATATCACTATTCCATACATGATACTCCCTCCGTCCCACAATGTAAGACGTTTTTGCAAGCCAGGTTA
CAAAAACGTCATATATTGTGGGACGGAGGGAGTATATGGAAGCCACCAAACGTTTACCTTGAAATTCGGCTGGCGGCAAC
CCGGGCACAGATGCGCTCTGGACAGTGCCAGTTTCAGCTCTTTCTGCATGTTTCTGACGACATCATTCACCTCCACCTTC
ACTCTCAGCTTCTCCCTATCGATTTTGCATTGTTCACTGTCAAAAGGGAGCATTGGTT-CAGAATTAGTTATCCAGAGAA
TAGATATGCTACATGATGCTTGACAGATCACACTTAACAAGGGGACATCACAAGACAATATGTACCTTGTATGACCTTGA
CTTGATGGCTTGCCACAGGCATAACA
>chr2A_1891
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--------AGCCAAAACCAATGCTCGCCCTATGATAAACCCTCACAAGGATTCTGATTGAGAGTCATCGTTCTTCTTTGG
TCTAGCCCGAGCAACC-------TCGGGGTCGACAGTGTGCTGCTTGCACCCTCGAGGGCCATAGTGCTCCGAGCTCTTC
CGCACCACCTTCCGGCACAGAGCACAATGATGAACCTGGCATCCCTCGCAGAAGACATGGTTGTTGTTTCCCAGCTGCTC
ACATCAGAGACAGAGTCTTCATTTACCAGAACCA-------------AG-TGAAAAATAAACTACAGCTATATTCAGATC
ACAGTAAAAAGGATCACCGATCC----------ATAT-------------------------------------------
------------------------------GATATTCGGAAGAGACCAAAACTTCACCTTGTAAGTTATCAGGTGGCAAT
TCGGGCATGGATGCGGTTTGTATCCACCCACTTTCAGTTTTTTCTGTAGCTCTTTGACAGCGTCAACCAAATCCACCTTT
GCTGTCCGCTTCTCATAATCGATTCTGCATTGTTCACTTTCAAAGGGGAGCATAGGTT-CAGATTTGG-TATCCAGAGAA
TAG-----------------------------------------------------------------------------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-----------S---S--SS---S-----------------------
-S-S-----------------------------------SS--------------------------------S------
---------------------------S-----------------------------------------S----------
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-S------S---------------S----------------------S--------------S-----------------
-------------S-----------------S-----------SSSSSSSS------S-------SS-----S--SSS-S
SS-S----------------------------------------------------------------------------
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----S---S-----S--------------S---------SSSSSSSSSSS------------------------------
---S-----------------------------SS-----------------------------------S---------
--------------------------------------------------------------------------S-----
S--------------------------------------------------S-----------------S---S---S--
S--------------------------------------S-----------------------S--------S-------
-------------S-------S--SS---S--S--S--S----S----S---------S--S--S-SSSSSSSSS-----
---S-------S-----------------------S-------S-------S----------------------------
----S-----------------------------------------SS-------------S---S--------------
S----S---------------------------------------------------------------------S----
---SSSS---------S-----S-------------S----S----------------------------S---------
S--------------------S----------S--S-S-SSSSSS-------S------------S--------------
----S------------------S----------------S------------S--------------------------
----------------------------------------------------------S---------------------
-----------------------------------SS--S--------------S-----------------SS------
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-----------------------------S--------------------------------------------------
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---------------------------S----------------------------------------------------
-------------------------------------------------------------------------------S
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---------------------------------------------S--------------S-------------------
--------------S-----------------------------S---------------S-------------------
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>forward_314
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------------------------------------------------------CTATGCCCAGTCGGAACACA------
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>reverse_3106
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-----------------------------------------------------------------CAACAGAGACGTGAG
CAGCT---------------------------------------------------------------------------
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