Multiple sequence alignment - TraesCS2B01G466200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G466200 chr2B 100.000 2356 0 0 1 2356 661779625 661777270 0.000000e+00 4351
1 TraesCS2B01G466200 chr2B 82.143 756 76 31 714 1425 661833680 661832940 5.610000e-166 593
2 TraesCS2B01G466200 chr2B 92.574 202 14 1 2 202 133828622 133828823 2.960000e-74 289
3 TraesCS2B01G466200 chr2A 83.259 1792 167 56 608 2356 694955953 694954252 0.000000e+00 1524
4 TraesCS2B01G466200 chr2A 82.251 862 77 42 699 1526 694976901 694976082 0.000000e+00 675
5 TraesCS2B01G466200 chr2A 92.574 202 14 1 1 201 120355416 120355617 2.960000e-74 289
6 TraesCS2B01G466200 chr2D 84.422 1316 102 41 714 1974 555224037 555222770 0.000000e+00 1199
7 TraesCS2B01G466200 chr2D 94.304 316 10 4 2041 2356 555222672 555222365 5.890000e-131 477
8 TraesCS2B01G466200 chr2D 90.566 106 7 3 1377 1480 555234811 555234707 1.140000e-28 137
9 TraesCS2B01G466200 chr4B 93.103 203 13 1 1 202 61890485 61890687 1.770000e-76 296
10 TraesCS2B01G466200 chr1B 93.103 203 13 1 1 202 675391814 675392016 1.770000e-76 296
11 TraesCS2B01G466200 chr7B 92.611 203 14 1 1 202 404903522 404903320 8.240000e-75 291
12 TraesCS2B01G466200 chr7B 92.118 203 15 1 1 202 746908898 746908696 3.830000e-73 285
13 TraesCS2B01G466200 chr5B 92.118 203 15 1 1 202 339464819 339464617 3.830000e-73 285
14 TraesCS2B01G466200 chr4A 92.118 203 15 1 1 202 453350281 453350483 3.830000e-73 285
15 TraesCS2B01G466200 chr3B 92.118 203 14 2 1 202 169374470 169374269 3.830000e-73 285


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G466200 chr2B 661777270 661779625 2355 True 4351 4351 100.000 1 2356 1 chr2B.!!$R1 2355
1 TraesCS2B01G466200 chr2B 661832940 661833680 740 True 593 593 82.143 714 1425 1 chr2B.!!$R2 711
2 TraesCS2B01G466200 chr2A 694954252 694955953 1701 True 1524 1524 83.259 608 2356 1 chr2A.!!$R1 1748
3 TraesCS2B01G466200 chr2A 694976082 694976901 819 True 675 675 82.251 699 1526 1 chr2A.!!$R2 827
4 TraesCS2B01G466200 chr2D 555222365 555224037 1672 True 838 1199 89.363 714 2356 2 chr2D.!!$R2 1642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.031043 TTTCACCATCGTCGTCGTGT 59.969 50.0 1.33 0.00 38.33 4.49 F
442 443 0.033504 AATCGAACCTGCAGTCGTGT 59.966 50.0 21.72 12.06 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1278 1340 0.527385 GCAGACCAAAAACGCAGCAA 60.527 50.0 0.00 0.0 0.00 3.91 R
2031 2207 0.817229 TCATGCACTTGCGGTGTCAA 60.817 50.0 10.54 0.0 46.86 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.042800 GATCAGGTCGACCTAGGGC 58.957 63.158 35.80 20.91 46.65 5.19
22 23 0.755698 GATCAGGTCGACCTAGGGCA 60.756 60.000 35.80 17.65 46.65 5.36
23 24 0.757188 ATCAGGTCGACCTAGGGCAG 60.757 60.000 35.80 22.25 46.65 4.85
24 25 2.760385 AGGTCGACCTAGGGCAGC 60.760 66.667 35.59 11.58 46.48 5.25
25 26 3.851128 GGTCGACCTAGGGCAGCC 61.851 72.222 27.64 12.25 0.00 4.85
26 27 3.851128 GTCGACCTAGGGCAGCCC 61.851 72.222 24.90 24.90 45.90 5.19
79 80 4.941309 GCGTGTGGGGTTTCGGGT 62.941 66.667 0.00 0.00 0.00 5.28
80 81 2.667199 CGTGTGGGGTTTCGGGTC 60.667 66.667 0.00 0.00 0.00 4.46
81 82 2.281970 GTGTGGGGTTTCGGGTCC 60.282 66.667 0.00 0.00 0.00 4.46
82 83 2.448931 TGTGGGGTTTCGGGTCCT 60.449 61.111 0.00 0.00 0.00 3.85
83 84 2.350134 GTGGGGTTTCGGGTCCTC 59.650 66.667 0.00 0.00 0.00 3.71
84 85 2.122324 TGGGGTTTCGGGTCCTCA 60.122 61.111 0.00 0.00 0.00 3.86
85 86 1.770927 TGGGGTTTCGGGTCCTCAA 60.771 57.895 0.00 0.00 30.53 3.02
86 87 1.354168 TGGGGTTTCGGGTCCTCAAA 61.354 55.000 0.00 0.00 30.53 2.69
87 88 0.608308 GGGGTTTCGGGTCCTCAAAG 60.608 60.000 0.00 0.00 0.00 2.77
88 89 1.241990 GGGTTTCGGGTCCTCAAAGC 61.242 60.000 6.69 6.69 0.00 3.51
89 90 1.574702 GGTTTCGGGTCCTCAAAGCG 61.575 60.000 0.00 0.00 0.00 4.68
90 91 1.964373 TTTCGGGTCCTCAAAGCGC 60.964 57.895 0.00 0.00 0.00 5.92
91 92 3.894547 TTCGGGTCCTCAAAGCGCC 62.895 63.158 2.29 0.00 0.00 6.53
129 130 4.537433 GCGCTTCCGGCTGGATCT 62.537 66.667 16.96 0.00 45.91 2.75
130 131 2.279784 CGCTTCCGGCTGGATCTC 60.280 66.667 16.96 6.63 45.91 2.75
131 132 2.110006 GCTTCCGGCTGGATCTCC 59.890 66.667 16.96 0.09 45.91 3.71
132 133 2.439104 GCTTCCGGCTGGATCTCCT 61.439 63.158 16.96 0.00 45.91 3.69
133 134 1.977293 GCTTCCGGCTGGATCTCCTT 61.977 60.000 16.96 0.00 45.91 3.36
134 135 0.105778 CTTCCGGCTGGATCTCCTTC 59.894 60.000 16.96 0.00 45.91 3.46
135 136 1.676678 TTCCGGCTGGATCTCCTTCG 61.677 60.000 16.96 0.00 45.91 3.79
136 137 2.127869 CCGGCTGGATCTCCTTCGA 61.128 63.158 5.28 0.00 37.49 3.71
137 138 1.066587 CGGCTGGATCTCCTTCGAC 59.933 63.158 0.00 0.00 36.82 4.20
138 139 1.066587 GGCTGGATCTCCTTCGACG 59.933 63.158 0.00 0.00 36.82 5.12
139 140 1.668101 GGCTGGATCTCCTTCGACGT 61.668 60.000 0.00 0.00 36.82 4.34
140 141 0.526524 GCTGGATCTCCTTCGACGTG 60.527 60.000 0.00 0.00 36.82 4.49
141 142 1.095600 CTGGATCTCCTTCGACGTGA 58.904 55.000 0.00 0.00 36.82 4.35
142 143 1.064803 CTGGATCTCCTTCGACGTGAG 59.935 57.143 0.00 0.00 36.82 3.51
143 144 0.248702 GGATCTCCTTCGACGTGAGC 60.249 60.000 0.00 0.00 0.00 4.26
144 145 0.736053 GATCTCCTTCGACGTGAGCT 59.264 55.000 0.00 0.00 0.00 4.09
145 146 0.453793 ATCTCCTTCGACGTGAGCTG 59.546 55.000 0.00 0.00 0.00 4.24
146 147 0.889638 TCTCCTTCGACGTGAGCTGT 60.890 55.000 0.00 0.00 0.00 4.40
147 148 0.730834 CTCCTTCGACGTGAGCTGTG 60.731 60.000 0.00 0.00 0.00 3.66
148 149 1.170290 TCCTTCGACGTGAGCTGTGA 61.170 55.000 0.00 0.00 0.00 3.58
149 150 0.109086 CCTTCGACGTGAGCTGTGAT 60.109 55.000 0.00 0.00 0.00 3.06
150 151 0.987715 CTTCGACGTGAGCTGTGATG 59.012 55.000 0.00 0.00 0.00 3.07
151 152 1.008875 TTCGACGTGAGCTGTGATGC 61.009 55.000 0.00 0.00 0.00 3.91
152 153 1.734117 CGACGTGAGCTGTGATGCA 60.734 57.895 0.00 0.00 34.99 3.96
153 154 1.080435 CGACGTGAGCTGTGATGCAT 61.080 55.000 0.00 0.00 34.99 3.96
154 155 0.649475 GACGTGAGCTGTGATGCATC 59.351 55.000 20.14 20.14 34.99 3.91
155 156 0.037046 ACGTGAGCTGTGATGCATCA 60.037 50.000 25.42 25.42 34.99 3.07
164 165 3.692424 TGATGCATCACCCTCGATG 57.308 52.632 25.42 0.00 44.69 3.84
165 166 0.832626 TGATGCATCACCCTCGATGT 59.167 50.000 25.42 0.00 43.92 3.06
166 167 1.210234 TGATGCATCACCCTCGATGTT 59.790 47.619 25.42 0.00 43.92 2.71
167 168 1.600957 GATGCATCACCCTCGATGTTG 59.399 52.381 21.92 0.00 43.92 3.33
168 169 0.392863 TGCATCACCCTCGATGTTGG 60.393 55.000 0.00 0.00 43.92 3.77
169 170 0.107703 GCATCACCCTCGATGTTGGA 60.108 55.000 0.00 0.00 43.92 3.53
170 171 1.945387 CATCACCCTCGATGTTGGAG 58.055 55.000 0.00 0.00 38.38 3.86
171 172 1.482182 CATCACCCTCGATGTTGGAGA 59.518 52.381 0.00 0.00 38.38 3.71
172 173 1.866015 TCACCCTCGATGTTGGAGAT 58.134 50.000 0.00 0.00 33.27 2.75
173 174 3.026707 TCACCCTCGATGTTGGAGATA 57.973 47.619 0.00 0.00 33.27 1.98
174 175 2.693591 TCACCCTCGATGTTGGAGATAC 59.306 50.000 0.00 0.00 33.27 2.24
175 176 2.430694 CACCCTCGATGTTGGAGATACA 59.569 50.000 0.00 0.00 33.27 2.29
176 177 2.431057 ACCCTCGATGTTGGAGATACAC 59.569 50.000 0.00 0.00 33.27 2.90
177 178 2.543861 CCCTCGATGTTGGAGATACACG 60.544 54.545 0.00 0.00 33.27 4.49
178 179 2.357952 CCTCGATGTTGGAGATACACGA 59.642 50.000 0.00 0.00 33.27 4.35
179 180 3.004839 CCTCGATGTTGGAGATACACGAT 59.995 47.826 0.00 0.00 32.74 3.73
180 181 3.964909 TCGATGTTGGAGATACACGATG 58.035 45.455 0.00 0.00 30.23 3.84
181 182 3.630312 TCGATGTTGGAGATACACGATGA 59.370 43.478 0.00 0.00 30.23 2.92
182 183 3.731216 CGATGTTGGAGATACACGATGAC 59.269 47.826 0.00 0.00 0.00 3.06
183 184 3.145212 TGTTGGAGATACACGATGACG 57.855 47.619 0.00 0.00 45.75 4.35
210 211 1.477105 GTGCGAACACAAAGAAAGCC 58.523 50.000 0.00 0.00 46.61 4.35
211 212 1.098869 TGCGAACACAAAGAAAGCCA 58.901 45.000 0.00 0.00 0.00 4.75
212 213 1.474478 TGCGAACACAAAGAAAGCCAA 59.526 42.857 0.00 0.00 0.00 4.52
213 214 2.119457 GCGAACACAAAGAAAGCCAAG 58.881 47.619 0.00 0.00 0.00 3.61
214 215 2.119457 CGAACACAAAGAAAGCCAAGC 58.881 47.619 0.00 0.00 0.00 4.01
215 216 2.473816 GAACACAAAGAAAGCCAAGCC 58.526 47.619 0.00 0.00 0.00 4.35
216 217 1.484038 ACACAAAGAAAGCCAAGCCA 58.516 45.000 0.00 0.00 0.00 4.75
217 218 1.830477 ACACAAAGAAAGCCAAGCCAA 59.170 42.857 0.00 0.00 0.00 4.52
218 219 2.159057 ACACAAAGAAAGCCAAGCCAAG 60.159 45.455 0.00 0.00 0.00 3.61
219 220 1.202568 ACAAAGAAAGCCAAGCCAAGC 60.203 47.619 0.00 0.00 0.00 4.01
220 221 1.122227 AAAGAAAGCCAAGCCAAGCA 58.878 45.000 0.00 0.00 0.00 3.91
221 222 1.345063 AAGAAAGCCAAGCCAAGCAT 58.655 45.000 0.00 0.00 0.00 3.79
222 223 0.606604 AGAAAGCCAAGCCAAGCATG 59.393 50.000 0.00 0.00 0.00 4.06
223 224 1.004200 AAAGCCAAGCCAAGCATGC 60.004 52.632 10.51 10.51 0.00 4.06
224 225 2.459202 AAAGCCAAGCCAAGCATGCC 62.459 55.000 15.66 0.00 0.00 4.40
225 226 3.697747 GCCAAGCCAAGCATGCCA 61.698 61.111 15.66 0.00 0.00 4.92
226 227 2.577059 CCAAGCCAAGCATGCCAG 59.423 61.111 15.66 7.07 0.00 4.85
227 228 2.577059 CAAGCCAAGCATGCCAGG 59.423 61.111 15.66 17.64 0.00 4.45
231 232 3.766691 CCAAGCATGCCAGGCCAC 61.767 66.667 15.66 0.00 0.00 5.01
232 233 2.992689 CAAGCATGCCAGGCCACA 60.993 61.111 15.66 0.00 0.00 4.17
233 234 2.993264 AAGCATGCCAGGCCACAC 60.993 61.111 15.66 0.00 0.00 3.82
236 237 3.376078 CATGCCAGGCCACACCAC 61.376 66.667 9.64 0.00 43.14 4.16
242 243 4.935495 AGGCCACACCACGCACAG 62.935 66.667 5.01 0.00 43.14 3.66
244 245 2.280524 GCCACACCACGCACAGTA 60.281 61.111 0.00 0.00 0.00 2.74
245 246 2.604174 GCCACACCACGCACAGTAC 61.604 63.158 0.00 0.00 0.00 2.73
246 247 2.307309 CCACACCACGCACAGTACG 61.307 63.158 0.00 0.00 0.00 3.67
247 248 1.299544 CACACCACGCACAGTACGA 60.300 57.895 0.00 0.00 0.00 3.43
248 249 1.299620 ACACCACGCACAGTACGAC 60.300 57.895 0.00 0.00 0.00 4.34
249 250 1.299544 CACCACGCACAGTACGACA 60.300 57.895 0.00 0.00 0.00 4.35
250 251 1.299620 ACCACGCACAGTACGACAC 60.300 57.895 0.00 0.00 0.00 3.67
251 252 1.007734 CCACGCACAGTACGACACT 60.008 57.895 0.00 0.00 38.32 3.55
252 253 0.239082 CCACGCACAGTACGACACTA 59.761 55.000 0.00 0.00 34.98 2.74
253 254 1.324718 CACGCACAGTACGACACTAC 58.675 55.000 0.00 0.00 34.98 2.73
254 255 0.110509 ACGCACAGTACGACACTACG 60.111 55.000 0.00 0.00 34.98 3.51
255 256 0.164432 CGCACAGTACGACACTACGA 59.836 55.000 0.00 0.00 34.98 3.43
256 257 1.201998 CGCACAGTACGACACTACGAT 60.202 52.381 0.00 0.00 34.98 3.73
257 258 2.438583 GCACAGTACGACACTACGATC 58.561 52.381 0.00 0.00 34.98 3.69
258 259 2.790468 GCACAGTACGACACTACGATCC 60.790 54.545 0.00 0.00 34.98 3.36
259 260 2.012673 ACAGTACGACACTACGATCCC 58.987 52.381 0.00 0.00 34.98 3.85
260 261 2.286872 CAGTACGACACTACGATCCCT 58.713 52.381 0.00 0.00 34.98 4.20
261 262 2.681848 CAGTACGACACTACGATCCCTT 59.318 50.000 0.00 0.00 34.98 3.95
262 263 3.128242 CAGTACGACACTACGATCCCTTT 59.872 47.826 0.00 0.00 34.98 3.11
263 264 2.935481 ACGACACTACGATCCCTTTC 57.065 50.000 0.00 0.00 37.03 2.62
264 265 2.165167 ACGACACTACGATCCCTTTCA 58.835 47.619 0.00 0.00 37.03 2.69
265 266 2.094854 ACGACACTACGATCCCTTTCAC 60.095 50.000 0.00 0.00 37.03 3.18
266 267 2.734492 CGACACTACGATCCCTTTCACC 60.734 54.545 0.00 0.00 35.09 4.02
267 268 2.232941 GACACTACGATCCCTTTCACCA 59.767 50.000 0.00 0.00 0.00 4.17
268 269 2.838202 ACACTACGATCCCTTTCACCAT 59.162 45.455 0.00 0.00 0.00 3.55
269 270 3.118738 ACACTACGATCCCTTTCACCATC 60.119 47.826 0.00 0.00 0.00 3.51
270 271 2.100916 ACTACGATCCCTTTCACCATCG 59.899 50.000 0.00 0.00 43.06 3.84
271 272 0.902531 ACGATCCCTTTCACCATCGT 59.097 50.000 0.10 0.10 44.95 3.73
272 273 1.134788 ACGATCCCTTTCACCATCGTC 60.135 52.381 0.10 0.00 46.38 4.20
273 274 1.571919 GATCCCTTTCACCATCGTCG 58.428 55.000 0.00 0.00 0.00 5.12
274 275 0.902531 ATCCCTTTCACCATCGTCGT 59.097 50.000 0.00 0.00 0.00 4.34
275 276 0.245539 TCCCTTTCACCATCGTCGTC 59.754 55.000 0.00 0.00 0.00 4.20
276 277 1.076533 CCCTTTCACCATCGTCGTCG 61.077 60.000 0.00 0.00 38.55 5.12
277 278 0.388134 CCTTTCACCATCGTCGTCGT 60.388 55.000 1.33 0.00 38.33 4.34
278 279 0.708370 CTTTCACCATCGTCGTCGTG 59.292 55.000 1.33 0.35 38.33 4.35
279 280 0.031043 TTTCACCATCGTCGTCGTGT 59.969 50.000 1.33 0.00 38.33 4.49
280 281 0.031043 TTCACCATCGTCGTCGTGTT 59.969 50.000 1.33 0.00 38.33 3.32
281 282 0.386352 TCACCATCGTCGTCGTGTTC 60.386 55.000 1.33 0.00 38.33 3.18
282 283 1.080974 ACCATCGTCGTCGTGTTCC 60.081 57.895 1.33 0.00 38.33 3.62
283 284 1.211969 CCATCGTCGTCGTGTTCCT 59.788 57.895 1.33 0.00 38.33 3.36
284 285 1.071019 CCATCGTCGTCGTGTTCCTG 61.071 60.000 1.33 0.00 38.33 3.86
285 286 1.443872 ATCGTCGTCGTGTTCCTGC 60.444 57.895 1.33 0.00 38.33 4.85
286 287 2.137425 ATCGTCGTCGTGTTCCTGCA 62.137 55.000 1.33 0.00 38.33 4.41
287 288 1.733041 CGTCGTCGTGTTCCTGCAT 60.733 57.895 0.00 0.00 0.00 3.96
288 289 1.674611 CGTCGTCGTGTTCCTGCATC 61.675 60.000 0.00 0.00 0.00 3.91
289 290 1.443702 TCGTCGTGTTCCTGCATCG 60.444 57.895 0.00 0.00 0.00 3.84
290 291 2.778679 GTCGTGTTCCTGCATCGC 59.221 61.111 0.00 0.00 0.00 4.58
291 292 2.027073 GTCGTGTTCCTGCATCGCA 61.027 57.895 0.00 0.00 36.92 5.10
292 293 1.301322 TCGTGTTCCTGCATCGCAA 60.301 52.632 0.00 0.00 38.41 4.85
293 294 1.154413 CGTGTTCCTGCATCGCAAC 60.154 57.895 0.00 0.00 38.41 4.17
294 295 1.154413 GTGTTCCTGCATCGCAACG 60.154 57.895 0.00 0.00 38.41 4.10
295 296 2.324330 TGTTCCTGCATCGCAACGG 61.324 57.895 0.00 0.00 38.41 4.44
296 297 2.031919 TTCCTGCATCGCAACGGT 59.968 55.556 0.00 0.00 38.41 4.83
297 298 2.324330 TTCCTGCATCGCAACGGTG 61.324 57.895 0.00 0.00 41.32 4.94
298 299 3.803082 CCTGCATCGCAACGGTGG 61.803 66.667 0.90 0.00 38.53 4.61
299 300 4.465512 CTGCATCGCAACGGTGGC 62.466 66.667 0.90 0.00 38.53 5.01
301 302 4.465512 GCATCGCAACGGTGGCAG 62.466 66.667 8.46 0.77 38.53 4.85
302 303 3.803082 CATCGCAACGGTGGCAGG 61.803 66.667 8.46 0.00 34.00 4.85
306 307 3.670377 GCAACGGTGGCAGGGTTC 61.670 66.667 0.90 0.00 0.00 3.62
307 308 2.983592 CAACGGTGGCAGGGTTCC 60.984 66.667 0.00 0.00 0.00 3.62
308 309 3.175710 AACGGTGGCAGGGTTCCT 61.176 61.111 0.00 0.00 0.00 3.36
309 310 2.763645 AACGGTGGCAGGGTTCCTT 61.764 57.895 0.00 0.00 0.00 3.36
310 311 2.359975 CGGTGGCAGGGTTCCTTC 60.360 66.667 0.00 0.00 0.00 3.46
311 312 2.035783 GGTGGCAGGGTTCCTTCC 59.964 66.667 0.00 0.00 37.45 3.46
312 313 2.840753 GGTGGCAGGGTTCCTTCCA 61.841 63.158 1.24 1.24 44.23 3.53
313 314 3.936408 TGGCAGGGTTCCTTCCAT 58.064 55.556 1.24 0.00 41.74 3.41
314 315 1.691219 TGGCAGGGTTCCTTCCATC 59.309 57.895 1.24 0.00 41.74 3.51
315 316 1.076705 GGCAGGGTTCCTTCCATCC 60.077 63.158 0.00 0.00 36.92 3.51
316 317 1.076705 GCAGGGTTCCTTCCATCCC 60.077 63.158 0.00 0.00 40.16 3.85
317 318 1.863155 GCAGGGTTCCTTCCATCCCA 61.863 60.000 0.00 0.00 42.12 4.37
318 319 0.034089 CAGGGTTCCTTCCATCCCAC 60.034 60.000 0.00 0.00 42.12 4.61
319 320 0.178831 AGGGTTCCTTCCATCCCACT 60.179 55.000 0.00 0.00 42.12 4.00
320 321 0.034089 GGGTTCCTTCCATCCCACTG 60.034 60.000 0.00 0.00 39.68 3.66
321 322 0.991920 GGTTCCTTCCATCCCACTGA 59.008 55.000 0.00 0.00 0.00 3.41
322 323 1.354368 GGTTCCTTCCATCCCACTGAA 59.646 52.381 0.00 0.00 0.00 3.02
323 324 2.619074 GGTTCCTTCCATCCCACTGAAG 60.619 54.545 0.00 0.00 36.19 3.02
324 325 0.620556 TCCTTCCATCCCACTGAAGC 59.379 55.000 0.00 0.00 35.32 3.86
325 326 0.394899 CCTTCCATCCCACTGAAGCC 60.395 60.000 0.00 0.00 35.32 4.35
326 327 0.394899 CTTCCATCCCACTGAAGCCC 60.395 60.000 0.00 0.00 30.19 5.19
327 328 0.846427 TTCCATCCCACTGAAGCCCT 60.846 55.000 0.00 0.00 0.00 5.19
328 329 1.225704 CCATCCCACTGAAGCCCTC 59.774 63.158 0.00 0.00 0.00 4.30
329 330 1.225704 CATCCCACTGAAGCCCTCC 59.774 63.158 0.00 0.00 0.00 4.30
330 331 2.003548 ATCCCACTGAAGCCCTCCC 61.004 63.158 0.00 0.00 0.00 4.30
331 332 4.101448 CCCACTGAAGCCCTCCCG 62.101 72.222 0.00 0.00 0.00 5.14
332 333 3.322466 CCACTGAAGCCCTCCCGT 61.322 66.667 0.00 0.00 0.00 5.28
333 334 2.750350 CACTGAAGCCCTCCCGTT 59.250 61.111 0.00 0.00 0.00 4.44
334 335 1.073199 CACTGAAGCCCTCCCGTTT 59.927 57.895 0.00 0.00 0.00 3.60
335 336 0.955919 CACTGAAGCCCTCCCGTTTC 60.956 60.000 0.00 0.00 0.00 2.78
336 337 1.374947 CTGAAGCCCTCCCGTTTCA 59.625 57.895 0.00 0.00 0.00 2.69
337 338 0.674895 CTGAAGCCCTCCCGTTTCAG 60.675 60.000 1.61 1.61 40.16 3.02
338 339 1.377333 GAAGCCCTCCCGTTTCAGG 60.377 63.158 0.00 0.00 0.00 3.86
339 340 3.569200 AAGCCCTCCCGTTTCAGGC 62.569 63.158 0.00 0.00 44.20 4.85
340 341 4.035102 GCCCTCCCGTTTCAGGCT 62.035 66.667 0.00 0.00 40.57 4.58
341 342 2.269241 CCCTCCCGTTTCAGGCTC 59.731 66.667 0.00 0.00 0.00 4.70
342 343 2.592993 CCCTCCCGTTTCAGGCTCA 61.593 63.158 0.00 0.00 0.00 4.26
343 344 1.078848 CCTCCCGTTTCAGGCTCAG 60.079 63.158 0.00 0.00 0.00 3.35
344 345 1.078848 CTCCCGTTTCAGGCTCAGG 60.079 63.158 0.00 0.00 0.00 3.86
345 346 1.831652 CTCCCGTTTCAGGCTCAGGT 61.832 60.000 0.00 0.00 0.00 4.00
346 347 1.073199 CCCGTTTCAGGCTCAGGTT 59.927 57.895 0.00 0.00 0.00 3.50
347 348 0.955919 CCCGTTTCAGGCTCAGGTTC 60.956 60.000 0.00 0.00 0.00 3.62
348 349 0.250295 CCGTTTCAGGCTCAGGTTCA 60.250 55.000 0.00 0.00 0.00 3.18
349 350 1.151668 CGTTTCAGGCTCAGGTTCAG 58.848 55.000 0.00 0.00 0.00 3.02
350 351 0.877743 GTTTCAGGCTCAGGTTCAGC 59.122 55.000 0.00 0.00 36.02 4.26
351 352 0.473755 TTTCAGGCTCAGGTTCAGCA 59.526 50.000 0.00 0.00 38.77 4.41
352 353 0.250467 TTCAGGCTCAGGTTCAGCAC 60.250 55.000 0.00 0.00 38.77 4.40
353 354 2.031516 CAGGCTCAGGTTCAGCACG 61.032 63.158 0.00 0.00 38.77 5.34
354 355 3.426568 GGCTCAGGTTCAGCACGC 61.427 66.667 0.00 0.00 38.77 5.34
355 356 2.666190 GCTCAGGTTCAGCACGCA 60.666 61.111 0.00 0.00 36.82 5.24
356 357 2.959357 GCTCAGGTTCAGCACGCAC 61.959 63.158 0.00 0.00 36.82 5.34
357 358 1.301244 CTCAGGTTCAGCACGCACT 60.301 57.895 0.00 0.00 0.00 4.40
358 359 1.563435 CTCAGGTTCAGCACGCACTG 61.563 60.000 0.00 0.00 39.12 3.66
371 372 3.952675 CACTGCTTGCGCGTGGTT 61.953 61.111 8.43 0.00 39.65 3.67
372 373 3.952675 ACTGCTTGCGCGTGGTTG 61.953 61.111 8.43 0.00 39.65 3.77
373 374 3.952675 CTGCTTGCGCGTGGTTGT 61.953 61.111 8.43 0.00 39.65 3.32
374 375 4.249020 TGCTTGCGCGTGGTTGTG 62.249 61.111 8.43 0.00 39.65 3.33
375 376 3.947841 GCTTGCGCGTGGTTGTGA 61.948 61.111 8.43 0.00 0.00 3.58
376 377 2.052237 CTTGCGCGTGGTTGTGAC 60.052 61.111 8.43 0.00 0.00 3.67
377 378 3.521308 CTTGCGCGTGGTTGTGACC 62.521 63.158 8.43 0.00 46.71 4.02
385 386 4.612412 GGTTGTGACCGTCGCCCA 62.612 66.667 9.57 0.00 35.91 5.36
386 387 3.343421 GTTGTGACCGTCGCCCAC 61.343 66.667 9.57 3.10 0.00 4.61
387 388 3.851128 TTGTGACCGTCGCCCACA 61.851 61.111 9.57 12.03 38.83 4.17
388 389 4.595538 TGTGACCGTCGCCCACAC 62.596 66.667 9.57 7.70 36.07 3.82
389 390 4.295119 GTGACCGTCGCCCACACT 62.295 66.667 0.19 0.00 0.00 3.55
390 391 3.542676 TGACCGTCGCCCACACTT 61.543 61.111 0.00 0.00 0.00 3.16
391 392 3.041940 GACCGTCGCCCACACTTG 61.042 66.667 0.00 0.00 0.00 3.16
392 393 4.619227 ACCGTCGCCCACACTTGG 62.619 66.667 0.00 0.00 43.50 3.61
400 401 3.297620 CCACACTTGGGCCACTGC 61.298 66.667 5.23 0.00 39.57 4.40
426 427 3.571119 AGCTGTGCACGCTGAATC 58.429 55.556 27.31 6.93 36.15 2.52
427 428 2.097160 GCTGTGCACGCTGAATCG 59.903 61.111 21.16 1.86 0.00 3.34
428 429 2.382746 GCTGTGCACGCTGAATCGA 61.383 57.895 21.16 0.00 0.00 3.59
429 430 1.900585 GCTGTGCACGCTGAATCGAA 61.901 55.000 21.16 0.00 0.00 3.71
430 431 0.179240 CTGTGCACGCTGAATCGAAC 60.179 55.000 13.13 0.00 0.00 3.95
431 432 1.132640 GTGCACGCTGAATCGAACC 59.867 57.895 0.00 0.00 0.00 3.62
432 433 1.005037 TGCACGCTGAATCGAACCT 60.005 52.632 0.00 0.00 0.00 3.50
433 434 1.291184 TGCACGCTGAATCGAACCTG 61.291 55.000 0.00 0.00 0.00 4.00
434 435 1.421485 CACGCTGAATCGAACCTGC 59.579 57.895 0.00 0.00 0.00 4.85
435 436 1.005037 ACGCTGAATCGAACCTGCA 60.005 52.632 15.58 0.00 0.00 4.41
436 437 1.016130 ACGCTGAATCGAACCTGCAG 61.016 55.000 6.78 6.78 0.00 4.41
437 438 1.016130 CGCTGAATCGAACCTGCAGT 61.016 55.000 13.81 0.00 0.00 4.40
438 439 0.723981 GCTGAATCGAACCTGCAGTC 59.276 55.000 13.81 3.40 0.00 3.51
439 440 0.994995 CTGAATCGAACCTGCAGTCG 59.005 55.000 17.97 17.97 0.00 4.18
440 441 0.317160 TGAATCGAACCTGCAGTCGT 59.683 50.000 21.72 8.06 0.00 4.34
441 442 0.716108 GAATCGAACCTGCAGTCGTG 59.284 55.000 21.72 6.41 0.00 4.35
442 443 0.033504 AATCGAACCTGCAGTCGTGT 59.966 50.000 21.72 12.06 0.00 4.49
443 444 0.885879 ATCGAACCTGCAGTCGTGTA 59.114 50.000 21.72 7.60 0.00 2.90
444 445 0.039798 TCGAACCTGCAGTCGTGTAC 60.040 55.000 21.72 6.08 0.00 2.90
445 446 1.007336 CGAACCTGCAGTCGTGTACC 61.007 60.000 16.31 2.09 0.00 3.34
446 447 0.317479 GAACCTGCAGTCGTGTACCT 59.683 55.000 13.81 0.00 0.00 3.08
447 448 0.033504 AACCTGCAGTCGTGTACCTG 59.966 55.000 13.81 0.00 0.00 4.00
448 449 1.738099 CCTGCAGTCGTGTACCTGC 60.738 63.158 13.81 13.13 42.54 4.85
449 450 1.738099 CTGCAGTCGTGTACCTGCC 60.738 63.158 16.19 3.10 41.63 4.85
450 451 2.809601 GCAGTCGTGTACCTGCCG 60.810 66.667 9.87 0.00 36.90 5.69
451 452 2.809601 CAGTCGTGTACCTGCCGC 60.810 66.667 0.00 0.00 0.00 6.53
452 453 3.299977 AGTCGTGTACCTGCCGCA 61.300 61.111 0.00 0.00 0.00 5.69
453 454 2.809601 GTCGTGTACCTGCCGCAG 60.810 66.667 13.82 13.82 0.00 5.18
454 455 4.735132 TCGTGTACCTGCCGCAGC 62.735 66.667 15.36 2.16 40.48 5.25
456 457 4.697756 GTGTACCTGCCGCAGCCA 62.698 66.667 15.36 8.05 38.69 4.75
457 458 3.947459 TGTACCTGCCGCAGCCAA 61.947 61.111 15.36 0.00 38.69 4.52
458 459 3.431725 GTACCTGCCGCAGCCAAC 61.432 66.667 15.36 8.34 38.69 3.77
459 460 3.947459 TACCTGCCGCAGCCAACA 61.947 61.111 15.36 0.00 38.69 3.33
460 461 3.266686 TACCTGCCGCAGCCAACAT 62.267 57.895 15.36 0.00 38.69 2.71
461 462 4.124351 CCTGCCGCAGCCAACATG 62.124 66.667 15.36 0.00 38.69 3.21
462 463 3.367743 CTGCCGCAGCCAACATGT 61.368 61.111 7.61 0.00 38.69 3.21
463 464 3.620300 CTGCCGCAGCCAACATGTG 62.620 63.158 7.61 0.00 38.69 3.21
464 465 3.673484 GCCGCAGCCAACATGTGT 61.673 61.111 0.00 0.00 0.00 3.72
465 466 2.562912 CCGCAGCCAACATGTGTC 59.437 61.111 0.00 0.00 0.00 3.67
466 467 2.562912 CGCAGCCAACATGTGTCC 59.437 61.111 0.00 0.00 0.00 4.02
467 468 1.968017 CGCAGCCAACATGTGTCCT 60.968 57.895 0.00 0.00 0.00 3.85
468 469 1.582968 GCAGCCAACATGTGTCCTG 59.417 57.895 0.00 7.30 0.00 3.86
469 470 0.890542 GCAGCCAACATGTGTCCTGA 60.891 55.000 18.59 0.00 0.00 3.86
470 471 1.608055 CAGCCAACATGTGTCCTGAA 58.392 50.000 0.00 0.00 0.00 3.02
471 472 1.267806 CAGCCAACATGTGTCCTGAAC 59.732 52.381 0.00 0.00 0.00 3.18
472 473 1.133823 AGCCAACATGTGTCCTGAACA 60.134 47.619 0.00 0.00 34.78 3.18
473 474 1.680735 GCCAACATGTGTCCTGAACAA 59.319 47.619 0.00 0.00 40.31 2.83
474 475 2.287788 GCCAACATGTGTCCTGAACAAG 60.288 50.000 0.00 0.00 40.31 3.16
475 476 2.951642 CCAACATGTGTCCTGAACAAGT 59.048 45.455 0.00 0.00 40.31 3.16
476 477 3.381272 CCAACATGTGTCCTGAACAAGTT 59.619 43.478 0.00 0.00 39.34 2.66
477 478 4.353737 CAACATGTGTCCTGAACAAGTTG 58.646 43.478 0.00 9.40 45.24 3.16
478 479 2.358898 ACATGTGTCCTGAACAAGTTGC 59.641 45.455 1.81 0.00 40.31 4.17
479 480 1.388547 TGTGTCCTGAACAAGTTGCC 58.611 50.000 1.81 0.00 40.31 4.52
480 481 1.064758 TGTGTCCTGAACAAGTTGCCT 60.065 47.619 1.81 0.00 40.31 4.75
481 482 1.334869 GTGTCCTGAACAAGTTGCCTG 59.665 52.381 1.81 0.00 40.31 4.85
482 483 0.312102 GTCCTGAACAAGTTGCCTGC 59.688 55.000 1.81 0.00 0.00 4.85
483 484 0.106769 TCCTGAACAAGTTGCCTGCA 60.107 50.000 1.81 0.00 0.00 4.41
484 485 0.313043 CCTGAACAAGTTGCCTGCAG 59.687 55.000 6.78 6.78 0.00 4.41
485 486 0.318445 CTGAACAAGTTGCCTGCAGC 60.318 55.000 8.66 4.57 44.14 5.25
486 487 0.752743 TGAACAAGTTGCCTGCAGCT 60.753 50.000 8.66 2.40 44.23 4.24
487 488 0.039708 GAACAAGTTGCCTGCAGCTC 60.040 55.000 8.66 2.43 44.23 4.09
488 489 0.752743 AACAAGTTGCCTGCAGCTCA 60.753 50.000 8.66 5.43 44.23 4.26
489 490 1.285023 CAAGTTGCCTGCAGCTCAC 59.715 57.895 8.66 3.66 44.23 3.51
490 491 1.152902 AAGTTGCCTGCAGCTCACA 60.153 52.632 8.66 0.10 44.23 3.58
491 492 1.170919 AAGTTGCCTGCAGCTCACAG 61.171 55.000 8.66 6.33 44.23 3.66
492 493 1.895707 GTTGCCTGCAGCTCACAGT 60.896 57.895 8.66 0.00 44.23 3.55
493 494 0.603707 GTTGCCTGCAGCTCACAGTA 60.604 55.000 8.66 0.00 44.23 2.74
494 495 0.108396 TTGCCTGCAGCTCACAGTAA 59.892 50.000 8.66 0.00 44.23 2.24
495 496 0.321034 TGCCTGCAGCTCACAGTAAG 60.321 55.000 8.66 0.00 44.23 2.34
496 497 1.642952 GCCTGCAGCTCACAGTAAGC 61.643 60.000 8.66 0.00 40.14 3.09
502 503 3.239861 GCTCACAGTAAGCTTGCCT 57.760 52.632 9.86 1.54 36.80 4.75
503 504 0.801251 GCTCACAGTAAGCTTGCCTG 59.199 55.000 20.33 20.33 36.80 4.85
504 505 0.801251 CTCACAGTAAGCTTGCCTGC 59.199 55.000 21.33 4.02 0.00 4.85
505 506 0.108396 TCACAGTAAGCTTGCCTGCA 59.892 50.000 21.33 10.38 34.99 4.41
506 507 0.520404 CACAGTAAGCTTGCCTGCAG 59.480 55.000 21.33 6.78 34.99 4.41
507 508 0.397941 ACAGTAAGCTTGCCTGCAGA 59.602 50.000 17.39 0.00 34.99 4.26
508 509 1.004044 ACAGTAAGCTTGCCTGCAGAT 59.996 47.619 17.39 5.74 34.99 2.90
509 510 1.669779 CAGTAAGCTTGCCTGCAGATC 59.330 52.381 17.39 7.16 34.99 2.75
510 511 1.020437 GTAAGCTTGCCTGCAGATCC 58.980 55.000 17.39 3.53 34.99 3.36
511 512 0.620030 TAAGCTTGCCTGCAGATCCA 59.380 50.000 17.39 6.43 34.99 3.41
512 513 0.251474 AAGCTTGCCTGCAGATCCAA 60.251 50.000 17.39 13.89 34.99 3.53
513 514 0.964358 AGCTTGCCTGCAGATCCAAC 60.964 55.000 17.39 9.82 34.99 3.77
514 515 1.941999 GCTTGCCTGCAGATCCAACC 61.942 60.000 17.39 3.52 0.00 3.77
515 516 0.609957 CTTGCCTGCAGATCCAACCA 60.610 55.000 17.39 0.00 0.00 3.67
516 517 0.040058 TTGCCTGCAGATCCAACCAT 59.960 50.000 17.39 0.00 0.00 3.55
517 518 0.394762 TGCCTGCAGATCCAACCATC 60.395 55.000 17.39 0.00 0.00 3.51
518 519 1.105759 GCCTGCAGATCCAACCATCC 61.106 60.000 17.39 0.00 0.00 3.51
519 520 0.466922 CCTGCAGATCCAACCATCCC 60.467 60.000 17.39 0.00 0.00 3.85
520 521 0.256752 CTGCAGATCCAACCATCCCA 59.743 55.000 8.42 0.00 0.00 4.37
521 522 0.034186 TGCAGATCCAACCATCCCAC 60.034 55.000 0.00 0.00 0.00 4.61
522 523 0.257039 GCAGATCCAACCATCCCACT 59.743 55.000 0.00 0.00 0.00 4.00
523 524 2.020694 GCAGATCCAACCATCCCACTG 61.021 57.143 0.00 0.00 0.00 3.66
524 525 0.921896 AGATCCAACCATCCCACTGG 59.078 55.000 0.00 0.00 42.35 4.00
525 526 0.106519 GATCCAACCATCCCACTGGG 60.107 60.000 7.97 7.97 46.11 4.45
526 527 2.228841 ATCCAACCATCCCACTGGGC 62.229 60.000 9.60 0.00 43.94 5.36
527 528 2.440147 CAACCATCCCACTGGGCA 59.560 61.111 9.60 0.00 43.94 5.36
528 529 1.978617 CAACCATCCCACTGGGCAC 60.979 63.158 9.60 0.00 43.94 5.01
529 530 2.162906 AACCATCCCACTGGGCACT 61.163 57.895 9.60 0.00 43.94 4.40
530 531 2.044650 CCATCCCACTGGGCACTG 60.045 66.667 9.60 6.70 43.94 3.66
531 532 2.044650 CATCCCACTGGGCACTGG 60.045 66.667 9.60 0.00 43.94 4.00
532 533 4.052518 ATCCCACTGGGCACTGGC 62.053 66.667 9.60 0.00 43.94 4.85
542 543 2.427320 GCACTGGCCACTGACTGA 59.573 61.111 15.78 0.00 0.00 3.41
543 544 1.227943 GCACTGGCCACTGACTGAA 60.228 57.895 15.78 0.00 0.00 3.02
544 545 1.233285 GCACTGGCCACTGACTGAAG 61.233 60.000 15.78 0.00 0.00 3.02
545 546 1.072159 ACTGGCCACTGACTGAAGC 59.928 57.895 0.00 0.00 0.00 3.86
546 547 1.673665 CTGGCCACTGACTGAAGCC 60.674 63.158 0.00 9.37 44.13 4.35
547 548 2.360475 GGCCACTGACTGAAGCCC 60.360 66.667 0.00 0.00 37.66 5.19
548 549 2.431683 GCCACTGACTGAAGCCCA 59.568 61.111 0.00 0.00 0.00 5.36
549 550 1.968540 GCCACTGACTGAAGCCCAC 60.969 63.158 0.00 0.00 0.00 4.61
550 551 1.302832 CCACTGACTGAAGCCCACC 60.303 63.158 0.00 0.00 0.00 4.61
551 552 1.669115 CACTGACTGAAGCCCACCG 60.669 63.158 0.00 0.00 0.00 4.94
552 553 2.743928 CTGACTGAAGCCCACCGC 60.744 66.667 0.00 0.00 37.98 5.68
563 564 4.695231 CCACCGCTTCGACGTCGT 62.695 66.667 34.40 14.15 40.80 4.34
564 565 2.728383 CACCGCTTCGACGTCGTT 60.728 61.111 34.40 12.46 40.80 3.85
565 566 2.728383 ACCGCTTCGACGTCGTTG 60.728 61.111 34.40 27.16 40.80 4.10
566 567 2.728383 CCGCTTCGACGTCGTTGT 60.728 61.111 34.40 0.00 40.80 3.32
567 568 2.459904 CGCTTCGACGTCGTTGTG 59.540 61.111 34.40 27.78 40.80 3.33
568 569 2.007114 CGCTTCGACGTCGTTGTGA 61.007 57.895 34.40 14.92 40.80 3.58
569 570 1.481683 GCTTCGACGTCGTTGTGAC 59.518 57.895 34.40 16.84 44.53 3.67
570 571 1.873355 GCTTCGACGTCGTTGTGACC 61.873 60.000 34.40 14.81 45.23 4.02
571 572 1.594269 CTTCGACGTCGTTGTGACCG 61.594 60.000 34.40 9.50 45.23 4.79
572 573 2.987213 TTCGACGTCGTTGTGACCGG 62.987 60.000 34.40 0.00 45.23 5.28
573 574 3.400590 GACGTCGTTGTGACCGGC 61.401 66.667 0.00 0.00 45.23 6.13
590 591 4.562425 CGGCCACACCCACACAGT 62.562 66.667 2.24 0.00 33.26 3.55
591 592 2.594592 GGCCACACCCACACAGTC 60.595 66.667 0.00 0.00 0.00 3.51
592 593 2.191908 GCCACACCCACACAGTCA 59.808 61.111 0.00 0.00 0.00 3.41
593 594 2.186826 GCCACACCCACACAGTCAC 61.187 63.158 0.00 0.00 0.00 3.67
594 595 1.887242 CCACACCCACACAGTCACG 60.887 63.158 0.00 0.00 0.00 4.35
595 596 2.203015 ACACCCACACAGTCACGC 60.203 61.111 0.00 0.00 0.00 5.34
596 597 2.108976 CACCCACACAGTCACGCT 59.891 61.111 0.00 0.00 0.00 5.07
597 598 1.523711 CACCCACACAGTCACGCTT 60.524 57.895 0.00 0.00 0.00 4.68
598 599 1.523711 ACCCACACAGTCACGCTTG 60.524 57.895 0.00 0.00 0.00 4.01
599 600 2.253758 CCCACACAGTCACGCTTGG 61.254 63.158 0.00 0.00 0.00 3.61
600 601 2.253758 CCACACAGTCACGCTTGGG 61.254 63.158 0.00 0.00 0.00 4.12
601 602 2.591715 ACACAGTCACGCTTGGGC 60.592 61.111 0.00 0.00 0.00 5.36
602 603 3.357079 CACAGTCACGCTTGGGCC 61.357 66.667 0.00 0.00 34.44 5.80
603 604 3.560251 ACAGTCACGCTTGGGCCT 61.560 61.111 4.53 0.00 34.44 5.19
604 605 2.281761 CAGTCACGCTTGGGCCTT 60.282 61.111 4.53 0.00 34.44 4.35
605 606 2.281761 AGTCACGCTTGGGCCTTG 60.282 61.111 4.53 0.00 34.44 3.61
606 607 4.043200 GTCACGCTTGGGCCTTGC 62.043 66.667 4.53 8.24 34.44 4.01
636 637 3.648982 CACAGCTTTGCACGCCGA 61.649 61.111 0.00 0.00 0.00 5.54
637 638 2.899838 ACAGCTTTGCACGCCGAA 60.900 55.556 0.00 0.00 0.00 4.30
638 639 2.427410 CAGCTTTGCACGCCGAAC 60.427 61.111 0.00 0.00 0.00 3.95
669 670 0.950555 GCAGCGGACATGTGTTCTGA 60.951 55.000 1.15 0.00 0.00 3.27
680 681 5.437060 ACATGTGTTCTGAACAAGTTACCT 58.563 37.500 23.55 2.88 44.16 3.08
681 682 5.527582 ACATGTGTTCTGAACAAGTTACCTC 59.472 40.000 23.55 10.09 44.16 3.85
685 686 3.936372 TCTGAACAAGTTACCTCGAGG 57.064 47.619 30.11 30.11 42.17 4.63
686 687 2.561419 TCTGAACAAGTTACCTCGAGGG 59.439 50.000 34.04 17.99 40.27 4.30
687 688 2.561419 CTGAACAAGTTACCTCGAGGGA 59.439 50.000 34.04 25.81 40.27 4.20
688 689 2.561419 TGAACAAGTTACCTCGAGGGAG 59.439 50.000 34.04 17.31 40.27 4.30
696 697 3.430497 CTCGAGGGAGGGAGGGGA 61.430 72.222 3.91 0.00 36.61 4.81
697 698 3.430497 TCGAGGGAGGGAGGGGAG 61.430 72.222 0.00 0.00 0.00 4.30
729 731 2.134201 GGTTTTGGACCTTTGCTTCG 57.866 50.000 0.00 0.00 45.55 3.79
745 747 0.885196 TTCGGAAAATGGAAAGGGCG 59.115 50.000 0.00 0.00 0.00 6.13
746 748 0.963355 TCGGAAAATGGAAAGGGCGG 60.963 55.000 0.00 0.00 0.00 6.13
747 749 1.897423 GGAAAATGGAAAGGGCGGG 59.103 57.895 0.00 0.00 0.00 6.13
750 752 1.257750 AAAATGGAAAGGGCGGGCTC 61.258 55.000 0.26 0.00 0.00 4.70
753 756 4.491409 GGAAAGGGCGGGCTCCTC 62.491 72.222 0.26 0.00 32.59 3.71
754 757 4.491409 GAAAGGGCGGGCTCCTCC 62.491 72.222 0.26 0.00 32.59 4.30
806 817 0.663153 ACTCAAAGCGCCAAACTGTC 59.337 50.000 2.29 0.00 0.00 3.51
831 845 2.744787 CGCTAAGCAAATCGAAGCAT 57.255 45.000 9.96 1.55 32.69 3.79
840 855 4.697352 AGCAAATCGAAGCATACTCAAAGT 59.303 37.500 9.96 0.00 0.00 2.66
852 867 0.508641 CTCAAAGTCAACGCGTGAGG 59.491 55.000 14.98 5.92 36.74 3.86
864 879 0.319900 GCGTGAGGTTCAGAGAAGCA 60.320 55.000 11.00 0.00 0.00 3.91
875 892 6.652900 AGGTTCAGAGAAGCATAAGAAAAGTC 59.347 38.462 11.00 0.00 0.00 3.01
878 895 6.763355 TCAGAGAAGCATAAGAAAAGTCAGT 58.237 36.000 0.00 0.00 0.00 3.41
880 897 8.031864 TCAGAGAAGCATAAGAAAAGTCAGTAG 58.968 37.037 0.00 0.00 0.00 2.57
892 909 6.929606 AGAAAAGTCAGTAGAAATTGTAGCGT 59.070 34.615 0.00 0.00 0.00 5.07
895 912 4.389077 AGTCAGTAGAAATTGTAGCGTTGC 59.611 41.667 0.00 0.00 0.00 4.17
896 913 3.682858 TCAGTAGAAATTGTAGCGTTGCC 59.317 43.478 0.00 0.00 0.00 4.52
906 931 0.459585 TAGCGTTGCCATCTCGGAAC 60.460 55.000 0.00 0.00 36.56 3.62
960 985 2.956333 AGTATCAGCCAGCGTACACATA 59.044 45.455 0.00 0.00 0.00 2.29
965 990 0.725117 GCCAGCGTACACATACCAAC 59.275 55.000 0.00 0.00 0.00 3.77
968 993 1.066430 CAGCGTACACATACCAACCCT 60.066 52.381 0.00 0.00 0.00 4.34
969 994 1.066430 AGCGTACACATACCAACCCTG 60.066 52.381 0.00 0.00 0.00 4.45
970 995 1.066716 GCGTACACATACCAACCCTGA 60.067 52.381 0.00 0.00 0.00 3.86
974 999 1.270625 ACACATACCAACCCTGACGTG 60.271 52.381 0.00 0.00 0.00 4.49
978 1008 1.999648 TACCAACCCTGACGTGTAGT 58.000 50.000 0.00 0.00 0.00 2.73
1278 1340 2.683867 GCTGATTCTGAGCTCTGCATTT 59.316 45.455 16.19 0.05 36.63 2.32
1319 1391 1.880675 GATATGTCGAGCTTCGGAGGA 59.119 52.381 0.00 0.00 40.88 3.71
1320 1392 1.309950 TATGTCGAGCTTCGGAGGAG 58.690 55.000 0.00 0.00 40.88 3.69
1321 1393 1.388065 ATGTCGAGCTTCGGAGGAGG 61.388 60.000 0.00 0.00 40.88 4.30
1377 1450 1.597461 GGACCAAGGAAGGAGACGG 59.403 63.158 0.00 0.00 0.00 4.79
1526 1612 2.309898 AAACGCATACAGAACGCAAC 57.690 45.000 0.00 0.00 0.00 4.17
1531 1617 2.603110 CGCATACAGAACGCAACAGTAT 59.397 45.455 0.00 0.00 0.00 2.12
1532 1618 3.794564 CGCATACAGAACGCAACAGTATA 59.205 43.478 0.00 0.00 0.00 1.47
1533 1619 4.266739 CGCATACAGAACGCAACAGTATAA 59.733 41.667 0.00 0.00 0.00 0.98
1563 1650 4.852134 TGGTTCTCATCATGTTGGTTTG 57.148 40.909 3.98 0.00 0.00 2.93
1564 1651 3.573538 TGGTTCTCATCATGTTGGTTTGG 59.426 43.478 3.98 0.00 0.00 3.28
1565 1652 3.573967 GGTTCTCATCATGTTGGTTTGGT 59.426 43.478 3.98 0.00 0.00 3.67
1566 1653 4.039124 GGTTCTCATCATGTTGGTTTGGTT 59.961 41.667 3.98 0.00 0.00 3.67
1567 1654 5.453198 GGTTCTCATCATGTTGGTTTGGTTT 60.453 40.000 3.98 0.00 0.00 3.27
1639 1726 4.750098 TCTGACCATTTCTTCGTTGAAGAC 59.250 41.667 8.67 0.00 46.54 3.01
1640 1727 4.703897 TGACCATTTCTTCGTTGAAGACT 58.296 39.130 8.67 0.00 46.54 3.24
1641 1728 4.511454 TGACCATTTCTTCGTTGAAGACTG 59.489 41.667 8.67 9.26 46.54 3.51
1642 1729 4.703897 ACCATTTCTTCGTTGAAGACTGA 58.296 39.130 8.67 0.00 46.54 3.41
1643 1730 5.123227 ACCATTTCTTCGTTGAAGACTGAA 58.877 37.500 8.67 2.31 46.54 3.02
1644 1731 5.237344 ACCATTTCTTCGTTGAAGACTGAAG 59.763 40.000 8.67 0.00 46.54 3.02
1645 1732 5.466728 CCATTTCTTCGTTGAAGACTGAAGA 59.533 40.000 8.67 0.00 46.54 2.87
1697 1786 1.787847 CTCGACAAATGTCCGGTGC 59.212 57.895 0.00 0.00 41.86 5.01
1710 1799 2.048023 CGGTGCCTGATGTTGCCAT 61.048 57.895 0.00 0.00 0.00 4.40
1714 1803 2.409055 GCCTGATGTTGCCATGCGA 61.409 57.895 0.00 0.00 0.00 5.10
1746 1835 2.031516 CGGCCACTCTTCACAGCAG 61.032 63.158 2.24 0.00 0.00 4.24
1748 1837 0.250467 GGCCACTCTTCACAGCAGAA 60.250 55.000 0.00 0.00 0.00 3.02
1749 1838 1.612726 GGCCACTCTTCACAGCAGAAT 60.613 52.381 0.00 0.00 0.00 2.40
1751 1840 3.338249 GCCACTCTTCACAGCAGAATAA 58.662 45.455 0.00 0.00 0.00 1.40
1753 1842 4.397417 GCCACTCTTCACAGCAGAATAAAT 59.603 41.667 0.00 0.00 0.00 1.40
1754 1843 5.586243 GCCACTCTTCACAGCAGAATAAATA 59.414 40.000 0.00 0.00 0.00 1.40
1757 1846 7.965107 CCACTCTTCACAGCAGAATAAATAAAC 59.035 37.037 0.00 0.00 0.00 2.01
1837 1936 2.281484 GGGAACTCTTGCACGCCA 60.281 61.111 0.00 0.00 0.00 5.69
1891 2008 5.455056 AGGCAATACAAGTACTCCTATCG 57.545 43.478 0.00 0.00 0.00 2.92
1925 2042 0.457035 CATTCAGTCCATTTGGGCCG 59.543 55.000 0.00 0.00 41.83 6.13
1994 2170 8.893727 TCTTGTAAAAACTCAGGAGAAGAAAAG 58.106 33.333 2.79 0.00 0.00 2.27
2031 2207 8.677300 AGAAGTGAATATCATACGCAAACATTT 58.323 29.630 0.00 0.00 0.00 2.32
2038 2214 4.541779 TCATACGCAAACATTTTGACACC 58.458 39.130 2.80 0.00 0.00 4.16
2065 2241 8.697067 GCAAGTGCATGATAATATTGTTTGATC 58.303 33.333 0.00 0.00 41.59 2.92
2088 2264 8.652810 ATCAATTAAAATGGCTGCTACAAATC 57.347 30.769 0.00 0.00 0.00 2.17
2106 2282 1.430992 TCCCAAACTCTTTCGGTCCT 58.569 50.000 0.00 0.00 0.00 3.85
2148 2324 4.005650 ACAGGTGAATCACAATACAGCAG 58.994 43.478 15.86 0.00 35.86 4.24
2181 2357 3.320826 ACAGCCTGAATTAAACAACCCAC 59.679 43.478 0.00 0.00 0.00 4.61
2185 2361 4.148838 CCTGAATTAAACAACCCACCTCA 58.851 43.478 0.00 0.00 0.00 3.86
2186 2362 4.772100 CCTGAATTAAACAACCCACCTCAT 59.228 41.667 0.00 0.00 0.00 2.90
2256 2432 1.574428 CGCAGGTTCCGGTTTCTTG 59.426 57.895 0.00 1.21 0.00 3.02
2267 2443 1.543429 CGGTTTCTTGGGAAGAGCAGT 60.543 52.381 0.00 0.00 39.03 4.40
2271 2447 1.644509 TCTTGGGAAGAGCAGTAGCA 58.355 50.000 0.00 0.00 45.49 3.49
2301 2477 0.528466 GAGACGCATCGCTGGAATCA 60.528 55.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.851128 GGCTGCCCTAGGTCGACC 61.851 72.222 27.67 27.67 0.00 4.79
9 10 3.851128 GGGCTGCCCTAGGTCGAC 61.851 72.222 30.42 7.13 41.34 4.20
10 11 2.306715 TATGGGCTGCCCTAGGTCGA 62.307 60.000 35.80 16.46 45.70 4.20
11 12 1.821061 CTATGGGCTGCCCTAGGTCG 61.821 65.000 35.80 15.67 45.70 4.79
12 13 2.062070 CTATGGGCTGCCCTAGGTC 58.938 63.158 35.80 11.26 45.70 3.85
13 14 2.150051 GCTATGGGCTGCCCTAGGT 61.150 63.158 35.80 21.51 45.70 3.08
14 15 2.753029 GCTATGGGCTGCCCTAGG 59.247 66.667 35.80 24.75 45.70 3.02
15 16 2.753029 GGCTATGGGCTGCCCTAG 59.247 66.667 35.80 30.35 45.70 3.02
16 17 3.241530 CGGCTATGGGCTGCCCTA 61.242 66.667 35.80 23.24 45.70 3.53
62 63 4.941309 ACCCGAAACCCCACACGC 62.941 66.667 0.00 0.00 0.00 5.34
63 64 2.667199 GACCCGAAACCCCACACG 60.667 66.667 0.00 0.00 0.00 4.49
64 65 2.281970 GGACCCGAAACCCCACAC 60.282 66.667 0.00 0.00 0.00 3.82
65 66 2.448931 AGGACCCGAAACCCCACA 60.449 61.111 0.00 0.00 0.00 4.17
66 67 2.059345 TTGAGGACCCGAAACCCCAC 62.059 60.000 0.00 0.00 0.00 4.61
67 68 1.354168 TTTGAGGACCCGAAACCCCA 61.354 55.000 0.00 0.00 0.00 4.96
68 69 0.608308 CTTTGAGGACCCGAAACCCC 60.608 60.000 0.00 0.00 0.00 4.95
69 70 1.241990 GCTTTGAGGACCCGAAACCC 61.242 60.000 0.00 0.00 0.00 4.11
70 71 1.574702 CGCTTTGAGGACCCGAAACC 61.575 60.000 0.00 0.00 0.00 3.27
71 72 1.866925 CGCTTTGAGGACCCGAAAC 59.133 57.895 0.00 0.00 0.00 2.78
72 73 1.964373 GCGCTTTGAGGACCCGAAA 60.964 57.895 0.00 0.00 0.00 3.46
73 74 2.358247 GCGCTTTGAGGACCCGAA 60.358 61.111 0.00 0.00 0.00 4.30
74 75 4.388499 GGCGCTTTGAGGACCCGA 62.388 66.667 7.64 0.00 0.00 5.14
118 119 2.127869 TCGAAGGAGATCCAGCCGG 61.128 63.158 0.00 0.00 38.89 6.13
119 120 1.066587 GTCGAAGGAGATCCAGCCG 59.933 63.158 0.92 1.86 38.89 5.52
120 121 1.066587 CGTCGAAGGAGATCCAGCC 59.933 63.158 0.92 0.00 38.89 4.85
121 122 0.526524 CACGTCGAAGGAGATCCAGC 60.527 60.000 0.00 0.00 38.89 4.85
122 123 1.064803 CTCACGTCGAAGGAGATCCAG 59.935 57.143 0.00 0.00 38.89 3.86
123 124 1.095600 CTCACGTCGAAGGAGATCCA 58.904 55.000 0.00 0.00 38.89 3.41
124 125 0.248702 GCTCACGTCGAAGGAGATCC 60.249 60.000 16.63 0.00 0.00 3.36
125 126 0.736053 AGCTCACGTCGAAGGAGATC 59.264 55.000 16.63 5.33 0.00 2.75
126 127 0.453793 CAGCTCACGTCGAAGGAGAT 59.546 55.000 16.63 10.16 0.00 2.75
127 128 0.889638 ACAGCTCACGTCGAAGGAGA 60.890 55.000 16.63 7.92 0.00 3.71
128 129 0.730834 CACAGCTCACGTCGAAGGAG 60.731 60.000 0.00 7.74 0.00 3.69
129 130 1.170290 TCACAGCTCACGTCGAAGGA 61.170 55.000 0.00 0.00 0.00 3.36
130 131 0.109086 ATCACAGCTCACGTCGAAGG 60.109 55.000 0.00 0.00 0.00 3.46
131 132 0.987715 CATCACAGCTCACGTCGAAG 59.012 55.000 0.00 0.00 0.00 3.79
132 133 1.008875 GCATCACAGCTCACGTCGAA 61.009 55.000 0.00 0.00 0.00 3.71
133 134 1.444383 GCATCACAGCTCACGTCGA 60.444 57.895 0.00 0.00 0.00 4.20
134 135 1.080435 ATGCATCACAGCTCACGTCG 61.080 55.000 0.00 0.00 34.99 5.12
135 136 0.649475 GATGCATCACAGCTCACGTC 59.351 55.000 21.92 0.00 34.99 4.34
136 137 0.037046 TGATGCATCACAGCTCACGT 60.037 50.000 25.42 0.00 35.06 4.49
137 138 2.758497 TGATGCATCACAGCTCACG 58.242 52.632 25.42 0.00 35.06 4.35
146 147 3.692424 CATCGAGGGTGATGCATCA 57.308 52.632 25.42 25.42 39.33 3.07
152 153 1.866015 TCTCCAACATCGAGGGTGAT 58.134 50.000 18.20 0.00 0.00 3.06
153 154 1.866015 ATCTCCAACATCGAGGGTGA 58.134 50.000 18.20 9.27 0.00 4.02
154 155 2.430694 TGTATCTCCAACATCGAGGGTG 59.569 50.000 8.44 8.44 0.00 4.61
155 156 2.431057 GTGTATCTCCAACATCGAGGGT 59.569 50.000 0.69 0.00 0.00 4.34
156 157 2.543861 CGTGTATCTCCAACATCGAGGG 60.544 54.545 0.69 0.00 0.00 4.30
157 158 2.357952 TCGTGTATCTCCAACATCGAGG 59.642 50.000 0.00 0.00 31.58 4.63
158 159 3.692791 TCGTGTATCTCCAACATCGAG 57.307 47.619 0.00 0.00 31.58 4.04
159 160 3.630312 TCATCGTGTATCTCCAACATCGA 59.370 43.478 0.00 0.00 36.02 3.59
160 161 3.731216 GTCATCGTGTATCTCCAACATCG 59.269 47.826 0.00 0.00 0.00 3.84
161 162 3.731216 CGTCATCGTGTATCTCCAACATC 59.269 47.826 0.00 0.00 0.00 3.06
162 163 3.706698 CGTCATCGTGTATCTCCAACAT 58.293 45.455 0.00 0.00 0.00 2.71
163 164 3.145212 CGTCATCGTGTATCTCCAACA 57.855 47.619 0.00 0.00 0.00 3.33
176 177 1.127817 GCACACGAACACGTCATCG 59.872 57.895 15.72 15.72 44.33 3.84
177 178 1.127817 CGCACACGAACACGTCATC 59.872 57.895 0.00 0.00 43.93 2.92
178 179 3.230540 CGCACACGAACACGTCAT 58.769 55.556 0.00 0.00 43.93 3.06
192 193 1.098869 TGGCTTTCTTTGTGTTCGCA 58.901 45.000 0.00 0.00 0.00 5.10
193 194 2.119457 CTTGGCTTTCTTTGTGTTCGC 58.881 47.619 0.00 0.00 0.00 4.70
194 195 2.119457 GCTTGGCTTTCTTTGTGTTCG 58.881 47.619 0.00 0.00 0.00 3.95
195 196 2.159114 TGGCTTGGCTTTCTTTGTGTTC 60.159 45.455 0.00 0.00 0.00 3.18
196 197 1.830477 TGGCTTGGCTTTCTTTGTGTT 59.170 42.857 0.00 0.00 0.00 3.32
197 198 1.484038 TGGCTTGGCTTTCTTTGTGT 58.516 45.000 0.00 0.00 0.00 3.72
198 199 2.476821 CTTGGCTTGGCTTTCTTTGTG 58.523 47.619 0.00 0.00 0.00 3.33
199 200 1.202568 GCTTGGCTTGGCTTTCTTTGT 60.203 47.619 0.00 0.00 0.00 2.83
200 201 1.202557 TGCTTGGCTTGGCTTTCTTTG 60.203 47.619 0.00 0.00 0.00 2.77
201 202 1.122227 TGCTTGGCTTGGCTTTCTTT 58.878 45.000 0.00 0.00 0.00 2.52
202 203 1.001633 CATGCTTGGCTTGGCTTTCTT 59.998 47.619 0.00 0.00 31.40 2.52
203 204 0.606604 CATGCTTGGCTTGGCTTTCT 59.393 50.000 0.00 0.00 31.40 2.52
204 205 1.017701 GCATGCTTGGCTTGGCTTTC 61.018 55.000 11.37 0.00 34.84 2.62
205 206 1.004200 GCATGCTTGGCTTGGCTTT 60.004 52.632 11.37 0.00 34.84 3.51
206 207 2.660802 GCATGCTTGGCTTGGCTT 59.339 55.556 11.37 0.00 34.84 4.35
214 215 3.766691 GTGGCCTGGCATGCTTGG 61.767 66.667 22.05 19.63 0.00 3.61
215 216 2.992689 TGTGGCCTGGCATGCTTG 60.993 61.111 22.05 10.41 0.00 4.01
216 217 2.993264 GTGTGGCCTGGCATGCTT 60.993 61.111 22.05 0.00 0.00 3.91
219 220 3.376078 GTGGTGTGGCCTGGCATG 61.376 66.667 22.05 0.00 38.35 4.06
225 226 4.935495 CTGTGCGTGGTGTGGCCT 62.935 66.667 3.32 0.00 38.35 5.19
226 227 3.818121 TACTGTGCGTGGTGTGGCC 62.818 63.158 0.00 0.00 37.90 5.36
227 228 2.280524 TACTGTGCGTGGTGTGGC 60.281 61.111 0.00 0.00 0.00 5.01
228 229 2.307309 CGTACTGTGCGTGGTGTGG 61.307 63.158 10.19 0.00 0.00 4.17
229 230 1.299544 TCGTACTGTGCGTGGTGTG 60.300 57.895 17.39 0.00 0.00 3.82
230 231 1.299620 GTCGTACTGTGCGTGGTGT 60.300 57.895 17.39 0.00 0.00 4.16
231 232 1.299544 TGTCGTACTGTGCGTGGTG 60.300 57.895 17.39 0.00 0.00 4.17
232 233 1.299620 GTGTCGTACTGTGCGTGGT 60.300 57.895 17.39 0.00 0.00 4.16
233 234 0.239082 TAGTGTCGTACTGTGCGTGG 59.761 55.000 17.39 0.00 40.65 4.94
234 235 1.324718 GTAGTGTCGTACTGTGCGTG 58.675 55.000 17.39 0.00 40.65 5.34
235 236 0.110509 CGTAGTGTCGTACTGTGCGT 60.111 55.000 17.39 1.50 40.65 5.24
236 237 0.164432 TCGTAGTGTCGTACTGTGCG 59.836 55.000 12.16 12.16 40.65 5.34
237 238 2.438583 GATCGTAGTGTCGTACTGTGC 58.561 52.381 5.54 0.00 40.65 4.57
238 239 2.223203 GGGATCGTAGTGTCGTACTGTG 60.223 54.545 5.54 0.00 40.65 3.66
239 240 2.012673 GGGATCGTAGTGTCGTACTGT 58.987 52.381 5.54 0.00 40.65 3.55
240 241 2.286872 AGGGATCGTAGTGTCGTACTG 58.713 52.381 5.54 0.00 40.65 2.74
241 242 2.706339 AGGGATCGTAGTGTCGTACT 57.294 50.000 0.00 1.17 43.56 2.73
242 243 3.127548 TGAAAGGGATCGTAGTGTCGTAC 59.872 47.826 0.00 0.00 0.00 3.67
243 244 3.127548 GTGAAAGGGATCGTAGTGTCGTA 59.872 47.826 0.00 0.00 0.00 3.43
244 245 2.094854 GTGAAAGGGATCGTAGTGTCGT 60.095 50.000 0.00 0.00 0.00 4.34
245 246 2.527100 GTGAAAGGGATCGTAGTGTCG 58.473 52.381 0.00 0.00 0.00 4.35
246 247 2.232941 TGGTGAAAGGGATCGTAGTGTC 59.767 50.000 0.00 0.00 0.00 3.67
247 248 2.253610 TGGTGAAAGGGATCGTAGTGT 58.746 47.619 0.00 0.00 0.00 3.55
248 249 3.458189 GATGGTGAAAGGGATCGTAGTG 58.542 50.000 0.00 0.00 0.00 2.74
249 250 2.100916 CGATGGTGAAAGGGATCGTAGT 59.899 50.000 0.00 0.00 34.39 2.73
250 251 2.100916 ACGATGGTGAAAGGGATCGTAG 59.899 50.000 0.00 0.00 46.72 3.51
251 252 2.104967 ACGATGGTGAAAGGGATCGTA 58.895 47.619 0.00 0.00 46.72 3.43
252 253 0.902531 ACGATGGTGAAAGGGATCGT 59.097 50.000 0.00 0.00 44.52 3.73
253 254 1.571919 GACGATGGTGAAAGGGATCG 58.428 55.000 0.00 0.00 42.66 3.69
254 255 1.134788 ACGACGATGGTGAAAGGGATC 60.135 52.381 0.00 0.00 0.00 3.36
255 256 0.902531 ACGACGATGGTGAAAGGGAT 59.097 50.000 0.00 0.00 0.00 3.85
256 257 0.245539 GACGACGATGGTGAAAGGGA 59.754 55.000 0.00 0.00 0.00 4.20
257 258 1.076533 CGACGACGATGGTGAAAGGG 61.077 60.000 0.00 0.00 42.66 3.95
258 259 0.388134 ACGACGACGATGGTGAAAGG 60.388 55.000 15.32 0.00 42.66 3.11
259 260 0.708370 CACGACGACGATGGTGAAAG 59.292 55.000 15.32 0.00 42.66 2.62
260 261 0.031043 ACACGACGACGATGGTGAAA 59.969 50.000 15.32 0.00 42.66 2.69
261 262 0.031043 AACACGACGACGATGGTGAA 59.969 50.000 15.32 0.00 42.66 3.18
262 263 0.386352 GAACACGACGACGATGGTGA 60.386 55.000 15.32 0.00 42.66 4.02
263 264 1.342082 GGAACACGACGACGATGGTG 61.342 60.000 15.32 8.88 42.66 4.17
264 265 1.080974 GGAACACGACGACGATGGT 60.081 57.895 15.32 7.19 42.66 3.55
265 266 1.071019 CAGGAACACGACGACGATGG 61.071 60.000 15.32 5.61 42.66 3.51
266 267 1.674611 GCAGGAACACGACGACGATG 61.675 60.000 15.32 10.82 42.66 3.84
267 268 1.443872 GCAGGAACACGACGACGAT 60.444 57.895 15.32 0.00 42.66 3.73
268 269 2.050714 GCAGGAACACGACGACGA 60.051 61.111 15.32 0.00 42.66 4.20
269 270 1.674611 GATGCAGGAACACGACGACG 61.675 60.000 5.58 5.58 45.75 5.12
270 271 1.674611 CGATGCAGGAACACGACGAC 61.675 60.000 0.00 0.00 0.00 4.34
271 272 1.443702 CGATGCAGGAACACGACGA 60.444 57.895 0.00 0.00 0.00 4.20
272 273 3.071459 GCGATGCAGGAACACGACG 62.071 63.158 0.00 0.00 0.00 5.12
273 274 1.565156 TTGCGATGCAGGAACACGAC 61.565 55.000 0.00 0.00 40.61 4.34
274 275 1.301322 TTGCGATGCAGGAACACGA 60.301 52.632 0.00 0.00 40.61 4.35
275 276 1.154413 GTTGCGATGCAGGAACACG 60.154 57.895 5.61 0.00 40.61 4.49
276 277 1.154413 CGTTGCGATGCAGGAACAC 60.154 57.895 10.25 0.00 41.61 3.32
277 278 2.324330 CCGTTGCGATGCAGGAACA 61.324 57.895 10.25 0.00 41.61 3.18
278 279 2.325082 ACCGTTGCGATGCAGGAAC 61.325 57.895 4.32 0.00 40.61 3.62
279 280 2.031919 ACCGTTGCGATGCAGGAA 59.968 55.556 4.32 0.00 40.61 3.36
280 281 2.741985 CACCGTTGCGATGCAGGA 60.742 61.111 4.32 0.00 40.61 3.86
281 282 3.803082 CCACCGTTGCGATGCAGG 61.803 66.667 0.00 0.00 40.61 4.85
282 283 4.465512 GCCACCGTTGCGATGCAG 62.466 66.667 0.00 0.00 40.61 4.41
284 285 4.465512 CTGCCACCGTTGCGATGC 62.466 66.667 0.00 0.00 0.00 3.91
285 286 3.803082 CCTGCCACCGTTGCGATG 61.803 66.667 0.00 0.00 0.00 3.84
289 290 3.670377 GAACCCTGCCACCGTTGC 61.670 66.667 0.00 0.00 0.00 4.17
290 291 2.976494 AAGGAACCCTGCCACCGTTG 62.976 60.000 0.00 0.00 32.13 4.10
291 292 2.692273 GAAGGAACCCTGCCACCGTT 62.692 60.000 0.00 0.00 32.13 4.44
292 293 3.175710 AAGGAACCCTGCCACCGT 61.176 61.111 0.00 0.00 32.13 4.83
293 294 2.359975 GAAGGAACCCTGCCACCG 60.360 66.667 0.00 0.00 32.13 4.94
298 299 1.076705 GGGATGGAAGGAACCCTGC 60.077 63.158 0.00 0.00 39.28 4.85
299 300 0.034089 GTGGGATGGAAGGAACCCTG 60.034 60.000 0.00 0.00 42.49 4.45
300 301 0.178831 AGTGGGATGGAAGGAACCCT 60.179 55.000 0.00 0.00 42.49 4.34
301 302 0.034089 CAGTGGGATGGAAGGAACCC 60.034 60.000 0.00 0.00 42.37 4.11
302 303 0.991920 TCAGTGGGATGGAAGGAACC 59.008 55.000 0.00 0.00 0.00 3.62
303 304 2.716217 CTTCAGTGGGATGGAAGGAAC 58.284 52.381 0.00 0.00 35.53 3.62
304 305 1.004745 GCTTCAGTGGGATGGAAGGAA 59.995 52.381 0.00 0.00 38.71 3.36
305 306 0.620556 GCTTCAGTGGGATGGAAGGA 59.379 55.000 0.00 0.00 38.71 3.36
306 307 0.394899 GGCTTCAGTGGGATGGAAGG 60.395 60.000 0.00 0.00 38.71 3.46
307 308 0.394899 GGGCTTCAGTGGGATGGAAG 60.395 60.000 0.00 0.00 40.69 3.46
308 309 0.846427 AGGGCTTCAGTGGGATGGAA 60.846 55.000 0.00 0.00 0.00 3.53
309 310 1.229951 AGGGCTTCAGTGGGATGGA 60.230 57.895 0.00 0.00 0.00 3.41
310 311 1.225704 GAGGGCTTCAGTGGGATGG 59.774 63.158 0.00 0.00 0.00 3.51
311 312 1.225704 GGAGGGCTTCAGTGGGATG 59.774 63.158 0.00 0.00 0.00 3.51
312 313 2.003548 GGGAGGGCTTCAGTGGGAT 61.004 63.158 0.00 0.00 0.00 3.85
313 314 2.610859 GGGAGGGCTTCAGTGGGA 60.611 66.667 0.00 0.00 0.00 4.37
314 315 4.101448 CGGGAGGGCTTCAGTGGG 62.101 72.222 0.00 0.00 0.00 4.61
315 316 2.411765 AAACGGGAGGGCTTCAGTGG 62.412 60.000 0.00 0.00 0.00 4.00
316 317 0.955919 GAAACGGGAGGGCTTCAGTG 60.956 60.000 0.00 0.00 0.00 3.66
317 318 1.375326 GAAACGGGAGGGCTTCAGT 59.625 57.895 0.00 0.00 0.00 3.41
318 319 0.674895 CTGAAACGGGAGGGCTTCAG 60.675 60.000 0.00 0.00 38.16 3.02
319 320 1.374947 CTGAAACGGGAGGGCTTCA 59.625 57.895 0.00 0.00 0.00 3.02
320 321 1.377333 CCTGAAACGGGAGGGCTTC 60.377 63.158 0.00 0.00 29.82 3.86
321 322 2.757077 CCTGAAACGGGAGGGCTT 59.243 61.111 0.00 0.00 29.82 4.35
322 323 4.035102 GCCTGAAACGGGAGGGCT 62.035 66.667 0.36 0.00 39.68 5.19
323 324 3.978571 GAGCCTGAAACGGGAGGGC 62.979 68.421 0.36 0.00 42.74 5.19
324 325 2.269241 GAGCCTGAAACGGGAGGG 59.731 66.667 0.36 0.00 29.82 4.30
325 326 1.078848 CTGAGCCTGAAACGGGAGG 60.079 63.158 0.36 0.00 29.82 4.30
326 327 1.078848 CCTGAGCCTGAAACGGGAG 60.079 63.158 0.36 0.00 32.36 4.30
327 328 1.415672 AACCTGAGCCTGAAACGGGA 61.416 55.000 0.00 0.00 34.52 5.14
328 329 0.955919 GAACCTGAGCCTGAAACGGG 60.956 60.000 0.00 0.00 36.28 5.28
329 330 0.250295 TGAACCTGAGCCTGAAACGG 60.250 55.000 0.00 0.00 0.00 4.44
330 331 1.151668 CTGAACCTGAGCCTGAAACG 58.848 55.000 0.00 0.00 0.00 3.60
331 332 0.877743 GCTGAACCTGAGCCTGAAAC 59.122 55.000 0.00 0.00 0.00 2.78
332 333 0.473755 TGCTGAACCTGAGCCTGAAA 59.526 50.000 0.00 0.00 35.43 2.69
333 334 0.250467 GTGCTGAACCTGAGCCTGAA 60.250 55.000 0.00 0.00 35.43 3.02
334 335 1.372683 GTGCTGAACCTGAGCCTGA 59.627 57.895 0.00 0.00 35.43 3.86
335 336 2.031516 CGTGCTGAACCTGAGCCTG 61.032 63.158 0.00 0.00 35.43 4.85
336 337 2.345244 CGTGCTGAACCTGAGCCT 59.655 61.111 0.00 0.00 35.43 4.58
337 338 3.426568 GCGTGCTGAACCTGAGCC 61.427 66.667 0.00 0.00 35.43 4.70
338 339 2.666190 TGCGTGCTGAACCTGAGC 60.666 61.111 0.00 0.00 36.95 4.26
339 340 1.301244 AGTGCGTGCTGAACCTGAG 60.301 57.895 0.00 0.00 0.00 3.35
340 341 1.595109 CAGTGCGTGCTGAACCTGA 60.595 57.895 2.85 0.00 38.70 3.86
341 342 2.941333 CAGTGCGTGCTGAACCTG 59.059 61.111 2.85 0.00 38.70 4.00
359 360 2.052237 GTCACAACCACGCGCAAG 60.052 61.111 5.73 0.00 43.44 4.01
360 361 3.578272 GGTCACAACCACGCGCAA 61.578 61.111 5.73 0.00 45.68 4.85
363 364 3.698463 GACGGTCACAACCACGCG 61.698 66.667 3.53 3.53 46.86 6.01
364 365 3.698463 CGACGGTCACAACCACGC 61.698 66.667 9.10 0.00 46.86 5.34
365 366 3.698463 GCGACGGTCACAACCACG 61.698 66.667 9.10 6.76 46.86 4.94
366 367 3.343421 GGCGACGGTCACAACCAC 61.343 66.667 9.10 0.00 46.86 4.16
367 368 4.612412 GGGCGACGGTCACAACCA 62.612 66.667 9.10 0.00 46.86 3.67
368 369 4.612412 TGGGCGACGGTCACAACC 62.612 66.667 9.10 4.89 42.66 3.77
369 370 3.343421 GTGGGCGACGGTCACAAC 61.343 66.667 9.10 0.41 0.00 3.32
370 371 3.851128 TGTGGGCGACGGTCACAA 61.851 61.111 9.10 0.00 38.30 3.33
371 372 4.595538 GTGTGGGCGACGGTCACA 62.596 66.667 9.10 2.64 38.84 3.58
372 373 3.802418 AAGTGTGGGCGACGGTCAC 62.802 63.158 9.10 0.00 0.00 3.67
373 374 3.542676 AAGTGTGGGCGACGGTCA 61.543 61.111 9.10 0.00 0.00 4.02
374 375 3.041940 CAAGTGTGGGCGACGGTC 61.042 66.667 0.00 0.00 0.00 4.79
375 376 4.619227 CCAAGTGTGGGCGACGGT 62.619 66.667 0.00 0.00 41.77 4.83
383 384 3.297620 GCAGTGGCCCAAGTGTGG 61.298 66.667 0.00 0.00 45.53 4.17
410 411 1.900585 TTCGATTCAGCGTGCACAGC 61.901 55.000 18.64 20.02 0.00 4.40
411 412 0.179240 GTTCGATTCAGCGTGCACAG 60.179 55.000 18.64 10.86 0.00 3.66
412 413 1.565156 GGTTCGATTCAGCGTGCACA 61.565 55.000 18.64 0.00 0.00 4.57
413 414 1.132640 GGTTCGATTCAGCGTGCAC 59.867 57.895 6.82 6.82 0.00 4.57
414 415 1.005037 AGGTTCGATTCAGCGTGCA 60.005 52.632 0.00 0.00 0.00 4.57
415 416 1.421485 CAGGTTCGATTCAGCGTGC 59.579 57.895 0.00 0.00 0.00 5.34
416 417 1.291184 TGCAGGTTCGATTCAGCGTG 61.291 55.000 0.00 0.00 0.00 5.34
417 418 1.005037 TGCAGGTTCGATTCAGCGT 60.005 52.632 0.00 0.00 0.00 5.07
418 419 1.016130 ACTGCAGGTTCGATTCAGCG 61.016 55.000 19.93 0.00 0.00 5.18
419 420 0.723981 GACTGCAGGTTCGATTCAGC 59.276 55.000 19.93 0.00 0.00 4.26
420 421 0.994995 CGACTGCAGGTTCGATTCAG 59.005 55.000 19.93 0.00 0.00 3.02
421 422 0.317160 ACGACTGCAGGTTCGATTCA 59.683 50.000 27.48 0.00 0.00 2.57
422 423 0.716108 CACGACTGCAGGTTCGATTC 59.284 55.000 27.48 10.37 0.00 2.52
423 424 0.033504 ACACGACTGCAGGTTCGATT 59.966 50.000 27.48 13.92 0.00 3.34
424 425 0.885879 TACACGACTGCAGGTTCGAT 59.114 50.000 27.48 18.52 0.00 3.59
425 426 0.039798 GTACACGACTGCAGGTTCGA 60.040 55.000 27.48 7.87 0.00 3.71
426 427 1.007336 GGTACACGACTGCAGGTTCG 61.007 60.000 21.28 21.28 0.00 3.95
427 428 0.317479 AGGTACACGACTGCAGGTTC 59.683 55.000 19.93 6.46 0.00 3.62
428 429 0.033504 CAGGTACACGACTGCAGGTT 59.966 55.000 19.93 0.00 0.00 3.50
429 430 1.666011 CAGGTACACGACTGCAGGT 59.334 57.895 19.93 8.65 0.00 4.00
430 431 4.578913 CAGGTACACGACTGCAGG 57.421 61.111 19.93 3.21 0.00 4.85
434 435 2.809601 GCGGCAGGTACACGACTG 60.810 66.667 0.00 0.00 37.76 3.51
435 436 3.282745 CTGCGGCAGGTACACGACT 62.283 63.158 22.11 0.00 0.00 4.18
436 437 2.809601 CTGCGGCAGGTACACGAC 60.810 66.667 22.11 0.00 0.00 4.34
437 438 4.735132 GCTGCGGCAGGTACACGA 62.735 66.667 29.44 0.00 38.54 4.35
439 440 4.697756 TGGCTGCGGCAGGTACAC 62.698 66.667 29.44 13.36 40.87 2.90
440 441 3.947459 TTGGCTGCGGCAGGTACA 61.947 61.111 29.44 4.36 39.75 2.90
441 442 3.431725 GTTGGCTGCGGCAGGTAC 61.432 66.667 29.44 14.07 39.75 3.34
442 443 3.266686 ATGTTGGCTGCGGCAGGTA 62.267 57.895 29.44 2.82 39.75 3.08
443 444 4.666253 ATGTTGGCTGCGGCAGGT 62.666 61.111 29.44 0.00 39.75 4.00
444 445 4.124351 CATGTTGGCTGCGGCAGG 62.124 66.667 29.44 12.82 39.75 4.85
445 446 3.367743 ACATGTTGGCTGCGGCAG 61.368 61.111 25.21 25.21 39.75 4.85
446 447 3.672447 CACATGTTGGCTGCGGCA 61.672 61.111 21.31 10.39 40.87 5.69
447 448 3.615536 GACACATGTTGGCTGCGGC 62.616 63.158 9.72 9.72 37.82 6.53
448 449 2.562912 GACACATGTTGGCTGCGG 59.437 61.111 0.00 0.00 0.00 5.69
449 450 1.968017 AGGACACATGTTGGCTGCG 60.968 57.895 0.00 0.00 31.36 5.18
450 451 0.890542 TCAGGACACATGTTGGCTGC 60.891 55.000 0.00 0.00 31.36 5.25
451 452 1.267806 GTTCAGGACACATGTTGGCTG 59.732 52.381 0.00 0.00 31.36 4.85
452 453 1.133823 TGTTCAGGACACATGTTGGCT 60.134 47.619 0.00 0.00 31.36 4.75
453 454 1.317613 TGTTCAGGACACATGTTGGC 58.682 50.000 0.00 0.00 32.00 4.52
454 455 2.951642 ACTTGTTCAGGACACATGTTGG 59.048 45.455 0.00 0.00 38.18 3.77
455 456 4.353737 CAACTTGTTCAGGACACATGTTG 58.646 43.478 13.94 13.94 45.82 3.33
456 457 3.181487 GCAACTTGTTCAGGACACATGTT 60.181 43.478 0.00 0.00 41.01 2.71
457 458 2.358898 GCAACTTGTTCAGGACACATGT 59.641 45.455 0.00 0.00 38.18 3.21
458 459 2.287788 GGCAACTTGTTCAGGACACATG 60.288 50.000 0.00 0.00 38.18 3.21
459 460 1.956477 GGCAACTTGTTCAGGACACAT 59.044 47.619 0.00 0.00 38.18 3.21
460 461 1.388547 GGCAACTTGTTCAGGACACA 58.611 50.000 0.00 0.00 38.18 3.72
474 475 0.603707 TACTGTGAGCTGCAGGCAAC 60.604 55.000 17.12 10.61 44.79 4.17
475 476 0.108396 TTACTGTGAGCTGCAGGCAA 59.892 50.000 17.12 8.97 44.79 4.52
476 477 0.321034 CTTACTGTGAGCTGCAGGCA 60.321 55.000 17.12 0.00 44.79 4.75
477 478 1.642952 GCTTACTGTGAGCTGCAGGC 61.643 60.000 17.12 7.98 38.22 4.85
478 479 2.464682 GCTTACTGTGAGCTGCAGG 58.535 57.895 17.12 0.00 38.22 4.85
484 485 0.801251 CAGGCAAGCTTACTGTGAGC 59.199 55.000 15.95 15.95 40.43 4.26
485 486 0.801251 GCAGGCAAGCTTACTGTGAG 59.199 55.000 23.44 3.33 34.79 3.51
486 487 0.108396 TGCAGGCAAGCTTACTGTGA 59.892 50.000 23.44 12.94 34.79 3.58
487 488 0.520404 CTGCAGGCAAGCTTACTGTG 59.480 55.000 23.44 16.03 34.79 3.66
488 489 0.397941 TCTGCAGGCAAGCTTACTGT 59.602 50.000 23.44 0.38 34.79 3.55
489 490 1.669779 GATCTGCAGGCAAGCTTACTG 59.330 52.381 20.35 20.35 34.99 2.74
490 491 1.407989 GGATCTGCAGGCAAGCTTACT 60.408 52.381 15.13 0.00 34.99 2.24
491 492 1.020437 GGATCTGCAGGCAAGCTTAC 58.980 55.000 15.13 0.00 34.99 2.34
492 493 0.620030 TGGATCTGCAGGCAAGCTTA 59.380 50.000 15.13 0.00 34.99 3.09
493 494 0.251474 TTGGATCTGCAGGCAAGCTT 60.251 50.000 15.13 0.00 34.99 3.74
494 495 0.964358 GTTGGATCTGCAGGCAAGCT 60.964 55.000 15.13 0.00 34.99 3.74
495 496 1.509923 GTTGGATCTGCAGGCAAGC 59.490 57.895 15.13 0.00 0.00 4.01
496 497 0.609957 TGGTTGGATCTGCAGGCAAG 60.610 55.000 15.13 0.00 0.00 4.01
497 498 0.040058 ATGGTTGGATCTGCAGGCAA 59.960 50.000 15.13 0.00 0.00 4.52
498 499 0.394762 GATGGTTGGATCTGCAGGCA 60.395 55.000 15.13 0.00 0.00 4.75
499 500 1.105759 GGATGGTTGGATCTGCAGGC 61.106 60.000 15.13 6.41 0.00 4.85
500 501 0.466922 GGGATGGTTGGATCTGCAGG 60.467 60.000 15.13 0.00 0.00 4.85
501 502 0.256752 TGGGATGGTTGGATCTGCAG 59.743 55.000 7.63 7.63 0.00 4.41
502 503 0.034186 GTGGGATGGTTGGATCTGCA 60.034 55.000 0.00 0.00 0.00 4.41
503 504 0.257039 AGTGGGATGGTTGGATCTGC 59.743 55.000 0.00 0.00 0.00 4.26
504 505 1.409241 CCAGTGGGATGGTTGGATCTG 60.409 57.143 0.00 0.00 35.47 2.90
505 506 0.921896 CCAGTGGGATGGTTGGATCT 59.078 55.000 0.00 0.00 35.47 2.75
506 507 3.502164 CCAGTGGGATGGTTGGATC 57.498 57.895 0.00 0.00 35.47 3.36
525 526 1.227943 TTCAGTCAGTGGCCAGTGC 60.228 57.895 32.24 25.88 0.00 4.40
526 527 1.233285 GCTTCAGTCAGTGGCCAGTG 61.233 60.000 31.43 31.43 0.00 3.66
527 528 1.072159 GCTTCAGTCAGTGGCCAGT 59.928 57.895 5.11 6.41 0.00 4.00
528 529 1.673665 GGCTTCAGTCAGTGGCCAG 60.674 63.158 5.11 0.00 42.08 4.85
529 530 2.431683 GGCTTCAGTCAGTGGCCA 59.568 61.111 0.00 0.00 42.08 5.36
530 531 2.360475 GGGCTTCAGTCAGTGGCC 60.360 66.667 0.00 0.00 41.80 5.36
531 532 1.968540 GTGGGCTTCAGTCAGTGGC 60.969 63.158 0.00 0.00 0.00 5.01
532 533 1.302832 GGTGGGCTTCAGTCAGTGG 60.303 63.158 0.00 0.00 0.00 4.00
533 534 1.669115 CGGTGGGCTTCAGTCAGTG 60.669 63.158 0.00 0.00 0.00 3.66
534 535 2.743718 CGGTGGGCTTCAGTCAGT 59.256 61.111 0.00 0.00 0.00 3.41
535 536 2.743928 GCGGTGGGCTTCAGTCAG 60.744 66.667 0.00 0.00 39.11 3.51
546 547 4.695231 ACGACGTCGAAGCGGTGG 62.695 66.667 41.52 12.23 43.02 4.61
547 548 2.728383 AACGACGTCGAAGCGGTG 60.728 61.111 41.52 12.99 43.02 4.94
548 549 2.728383 CAACGACGTCGAAGCGGT 60.728 61.111 41.52 17.80 43.02 5.68
549 550 2.728383 ACAACGACGTCGAAGCGG 60.728 61.111 41.52 25.62 43.02 5.52
550 551 2.007114 TCACAACGACGTCGAAGCG 61.007 57.895 41.52 25.71 43.02 4.68
551 552 1.481683 GTCACAACGACGTCGAAGC 59.518 57.895 41.52 20.83 43.02 3.86
552 553 1.594269 CGGTCACAACGACGTCGAAG 61.594 60.000 41.52 31.95 46.42 3.79
553 554 1.655046 CGGTCACAACGACGTCGAA 60.655 57.895 41.52 19.02 46.42 3.71
554 555 2.051971 CGGTCACAACGACGTCGA 60.052 61.111 41.52 18.59 46.42 4.20
555 556 3.095278 CCGGTCACAACGACGTCG 61.095 66.667 34.58 34.58 46.42 5.12
556 557 3.400590 GCCGGTCACAACGACGTC 61.401 66.667 5.18 5.18 46.42 4.34
573 574 4.562425 ACTGTGTGGGTGTGGCCG 62.562 66.667 0.00 0.00 38.44 6.13
574 575 2.594592 GACTGTGTGGGTGTGGCC 60.595 66.667 0.00 0.00 0.00 5.36
575 576 2.186826 GTGACTGTGTGGGTGTGGC 61.187 63.158 0.00 0.00 0.00 5.01
576 577 1.887242 CGTGACTGTGTGGGTGTGG 60.887 63.158 0.00 0.00 0.00 4.17
577 578 2.534019 GCGTGACTGTGTGGGTGTG 61.534 63.158 0.00 0.00 0.00 3.82
578 579 2.203015 GCGTGACTGTGTGGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
579 580 1.523711 AAGCGTGACTGTGTGGGTG 60.524 57.895 0.00 0.00 0.00 4.61
580 581 1.523711 CAAGCGTGACTGTGTGGGT 60.524 57.895 0.00 0.00 0.00 4.51
581 582 2.253758 CCAAGCGTGACTGTGTGGG 61.254 63.158 0.00 0.00 0.00 4.61
582 583 2.253758 CCCAAGCGTGACTGTGTGG 61.254 63.158 0.00 0.00 0.00 4.17
583 584 2.896801 GCCCAAGCGTGACTGTGTG 61.897 63.158 0.00 0.00 0.00 3.82
584 585 2.591715 GCCCAAGCGTGACTGTGT 60.592 61.111 0.00 0.00 0.00 3.72
585 586 3.357079 GGCCCAAGCGTGACTGTG 61.357 66.667 0.00 0.00 41.24 3.66
586 587 3.120086 AAGGCCCAAGCGTGACTGT 62.120 57.895 0.00 0.00 41.24 3.55
587 588 2.281761 AAGGCCCAAGCGTGACTG 60.282 61.111 0.00 0.00 41.24 3.51
588 589 2.281761 CAAGGCCCAAGCGTGACT 60.282 61.111 0.00 0.00 41.24 3.41
589 590 4.043200 GCAAGGCCCAAGCGTGAC 62.043 66.667 0.00 0.00 41.24 3.67
601 602 2.987547 CTGCACCAGTGGGCAAGG 60.988 66.667 21.14 10.64 39.93 3.61
602 603 3.677648 GCTGCACCAGTGGGCAAG 61.678 66.667 21.14 16.61 39.93 4.01
603 604 4.519612 TGCTGCACCAGTGGGCAA 62.520 61.111 21.14 9.08 39.93 4.52
606 607 2.981909 CTGTGCTGCACCAGTGGG 60.982 66.667 28.17 3.56 41.29 4.61
626 627 2.325166 GTTTCGTTCGGCGTGCAA 59.675 55.556 6.85 0.00 42.13 4.08
635 636 0.384353 GCTGCAGGTTCGTTTCGTTC 60.384 55.000 17.12 0.00 0.00 3.95
636 637 1.647084 GCTGCAGGTTCGTTTCGTT 59.353 52.632 17.12 0.00 0.00 3.85
637 638 2.594962 CGCTGCAGGTTCGTTTCGT 61.595 57.895 17.12 0.00 0.00 3.85
638 639 2.170985 CGCTGCAGGTTCGTTTCG 59.829 61.111 17.12 3.62 0.00 3.46
639 640 1.959226 TCCGCTGCAGGTTCGTTTC 60.959 57.895 17.12 0.00 0.00 2.78
640 641 2.110213 TCCGCTGCAGGTTCGTTT 59.890 55.556 17.12 0.00 0.00 3.60
680 681 3.430497 CTCCCCTCCCTCCCTCGA 61.430 72.222 0.00 0.00 0.00 4.04
681 682 4.548513 CCTCCCCTCCCTCCCTCG 62.549 77.778 0.00 0.00 0.00 4.63
685 686 4.890306 GCTCCCTCCCCTCCCTCC 62.890 77.778 0.00 0.00 0.00 4.30
686 687 3.767044 GAGCTCCCTCCCCTCCCTC 62.767 73.684 0.87 0.00 31.68 4.30
687 688 3.773154 GAGCTCCCTCCCCTCCCT 61.773 72.222 0.87 0.00 31.68 4.20
697 698 1.539157 CAAAACCAGAAGGAGCTCCC 58.461 55.000 29.54 15.08 38.69 4.30
712 713 2.060050 TCCGAAGCAAAGGTCCAAAA 57.940 45.000 0.00 0.00 0.00 2.44
729 731 1.897423 CCCGCCCTTTCCATTTTCC 59.103 57.895 0.00 0.00 0.00 3.13
746 748 2.069430 CAAGGGAGAGGGAGGAGCC 61.069 68.421 0.00 0.00 0.00 4.70
747 749 2.069430 CCAAGGGAGAGGGAGGAGC 61.069 68.421 0.00 0.00 0.00 4.70
778 789 2.821378 TGGCGCTTTGAGTAGTACTGTA 59.179 45.455 7.76 0.00 0.00 2.74
779 790 1.616865 TGGCGCTTTGAGTAGTACTGT 59.383 47.619 7.76 0.00 0.00 3.55
780 791 2.363788 TGGCGCTTTGAGTAGTACTG 57.636 50.000 7.76 0.00 0.00 2.74
781 792 3.064931 GTTTGGCGCTTTGAGTAGTACT 58.935 45.455 7.64 1.37 0.00 2.73
806 817 1.586578 TCGATTTGCTTAGCGCTAACG 59.413 47.619 25.53 23.64 44.07 3.18
831 845 2.390938 CTCACGCGTTGACTTTGAGTA 58.609 47.619 10.22 0.00 30.97 2.59
840 855 0.318699 CTCTGAACCTCACGCGTTGA 60.319 55.000 10.22 10.23 0.00 3.18
852 867 7.172361 ACTGACTTTTCTTATGCTTCTCTGAAC 59.828 37.037 0.00 0.00 0.00 3.18
875 892 3.435327 TGGCAACGCTACAATTTCTACTG 59.565 43.478 0.00 0.00 42.51 2.74
878 895 4.513442 AGATGGCAACGCTACAATTTCTA 58.487 39.130 0.00 0.00 42.51 2.10
880 897 3.685058 GAGATGGCAACGCTACAATTTC 58.315 45.455 0.00 0.00 42.51 2.17
885 902 1.153647 CCGAGATGGCAACGCTACA 60.154 57.895 0.00 0.00 42.51 2.74
892 909 1.218047 CCGAGTTCCGAGATGGCAA 59.782 57.895 0.00 0.00 41.76 4.52
895 912 1.141881 CCACCGAGTTCCGAGATGG 59.858 63.158 0.00 0.00 41.76 3.51
896 913 1.519455 GCCACCGAGTTCCGAGATG 60.519 63.158 0.00 0.00 41.76 2.90
906 931 2.798499 CGTACTTCTTATGGCCACCGAG 60.798 54.545 8.16 6.54 0.00 4.63
960 985 0.677842 GACTACACGTCAGGGTTGGT 59.322 55.000 0.00 0.00 42.37 3.67
968 993 5.047448 ACTCTCTAGTACTGACTACACGTCA 60.047 44.000 5.39 0.00 41.48 4.35
969 994 5.410067 ACTCTCTAGTACTGACTACACGTC 58.590 45.833 5.39 0.00 37.38 4.34
970 995 5.404466 ACTCTCTAGTACTGACTACACGT 57.596 43.478 5.39 0.00 37.10 4.49
974 999 6.038603 TCTCTCGACTCTCTAGTACTGACTAC 59.961 46.154 5.39 0.00 35.56 2.73
978 1008 5.918426 TTCTCTCGACTCTCTAGTACTGA 57.082 43.478 5.39 0.22 35.56 3.41
979 1009 5.050363 GCATTCTCTCGACTCTCTAGTACTG 60.050 48.000 5.39 0.00 35.56 2.74
980 1010 5.054477 GCATTCTCTCGACTCTCTAGTACT 58.946 45.833 0.00 0.00 35.56 2.73
984 1041 4.126437 TCTGCATTCTCTCGACTCTCTAG 58.874 47.826 0.00 0.00 0.00 2.43
986 1043 2.945008 CTCTGCATTCTCTCGACTCTCT 59.055 50.000 0.00 0.00 0.00 3.10
1057 1115 2.911926 GCTTGGCCTCCAGGTCCTT 61.912 63.158 3.32 0.00 39.61 3.36
1194 1252 3.252484 GCGATGCACGTACCCGAC 61.252 66.667 9.76 0.00 44.60 4.79
1207 1265 1.276547 CATTGCATACACGCGCGAT 59.723 52.632 39.36 25.72 32.25 4.58
1232 1294 2.490903 ACAGCTGTATAAAGACGTCCGT 59.509 45.455 20.16 2.51 0.00 4.69
1234 1296 2.603560 GCACAGCTGTATAAAGACGTCC 59.396 50.000 21.20 0.00 0.00 4.79
1278 1340 0.527385 GCAGACCAAAAACGCAGCAA 60.527 50.000 0.00 0.00 0.00 3.91
1377 1450 2.423926 TCTTGAGCTCTTGTCACGAC 57.576 50.000 16.19 0.00 0.00 4.34
1425 1509 7.812669 AGAAAGAAAACAGAAAACGTTCACATT 59.187 29.630 0.00 0.00 36.09 2.71
1477 1561 2.166050 CTGCAGTGAGATCAGTACAGCT 59.834 50.000 5.25 0.00 34.86 4.24
1492 1576 4.433186 TGCGTTTTATTATTGCTGCAGT 57.567 36.364 16.64 1.92 0.00 4.40
1526 1612 6.519382 TGAGAACCATCAGAGCATTATACTG 58.481 40.000 0.00 0.00 0.00 2.74
1563 1650 2.340328 GGCACCGGACCATGAAACC 61.340 63.158 9.46 0.00 0.00 3.27
1564 1651 0.965363 ATGGCACCGGACCATGAAAC 60.965 55.000 26.21 3.52 46.27 2.78
1565 1652 1.382240 ATGGCACCGGACCATGAAA 59.618 52.632 26.21 5.54 46.27 2.69
1566 1653 3.086143 ATGGCACCGGACCATGAA 58.914 55.556 26.21 5.87 46.27 2.57
1639 1726 3.251004 GCCGCATTTTATACCCTCTTCAG 59.749 47.826 0.00 0.00 0.00 3.02
1640 1727 3.211045 GCCGCATTTTATACCCTCTTCA 58.789 45.455 0.00 0.00 0.00 3.02
1641 1728 2.552743 GGCCGCATTTTATACCCTCTTC 59.447 50.000 0.00 0.00 0.00 2.87
1642 1729 2.174854 AGGCCGCATTTTATACCCTCTT 59.825 45.455 0.00 0.00 0.00 2.85
1643 1730 1.774856 AGGCCGCATTTTATACCCTCT 59.225 47.619 0.00 0.00 0.00 3.69
1644 1731 2.271944 AGGCCGCATTTTATACCCTC 57.728 50.000 0.00 0.00 0.00 4.30
1645 1732 2.709397 AGTAGGCCGCATTTTATACCCT 59.291 45.455 0.00 0.00 0.00 4.34
1714 1803 1.819632 GGCCGAATGGAAGTGCGAT 60.820 57.895 0.00 0.00 37.49 4.58
1753 1842 9.646427 AACAACTTCTTTTATGCTTTGTGTTTA 57.354 25.926 0.00 0.00 0.00 2.01
1754 1843 8.546597 AACAACTTCTTTTATGCTTTGTGTTT 57.453 26.923 0.00 0.00 0.00 2.83
1757 1846 8.655092 TGAAAACAACTTCTTTTATGCTTTGTG 58.345 29.630 0.00 0.00 0.00 3.33
1813 1908 2.152016 GTGCAAGAGTTCCCTTGGTAC 58.848 52.381 0.00 0.00 42.73 3.34
1837 1936 3.951775 TTTGTTGTTGCCAGAAGTGTT 57.048 38.095 0.00 0.00 0.00 3.32
1982 2157 6.042552 TCTCTGATGTGTTCTTTTCTTCTCCT 59.957 38.462 0.00 0.00 0.00 3.69
1994 2170 8.659925 ATGATATTCACTTCTCTGATGTGTTC 57.340 34.615 11.50 7.19 38.37 3.18
2031 2207 0.817229 TCATGCACTTGCGGTGTCAA 60.817 50.000 10.54 0.00 46.86 3.18
2038 2214 6.692249 TCAAACAATATTATCATGCACTTGCG 59.308 34.615 0.00 0.00 45.83 4.85
2065 2241 6.258507 GGGATTTGTAGCAGCCATTTTAATTG 59.741 38.462 0.00 0.00 0.00 2.32
2088 2264 1.071699 TCAGGACCGAAAGAGTTTGGG 59.928 52.381 0.00 0.00 42.13 4.12
2148 2324 2.358737 AGGCTGTAGCGTTGTGGC 60.359 61.111 0.00 0.00 43.26 5.01
2256 2432 1.153269 GCCTGCTACTGCTCTTCCC 60.153 63.158 0.00 0.00 40.48 3.97
2267 2443 3.390521 CTCCACCACCGCCTGCTA 61.391 66.667 0.00 0.00 0.00 3.49
2301 2477 5.193679 GCAGTTTTCCCCATTACAGTAGAT 58.806 41.667 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.