>input_sequence_82854
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-----------------ATGCAGAGGCCGGTGAGCACCCCGTCGTTCCCCGTCTTCGCGGACGAGGAGGGGGCGAAGGAC
CTGGAGGCCAAGCCGGAGAAGGCGCCCGCCGTCCGGCCGCCGGCGGTGACGGAGCGGTCCGTCCACCTCGTGCCGCTCAT
CGTCGTGCTCTGCTTCGTCGTCCTCTTCCTCTGCTCCCACGTCCCCTCCCCGTCGGGTACGTGCATCGCGCGTGT----A
TGCAATGCATGCAACGGACGTCTTTATACAGCTGTGCTGCTGATTCTGAGCTCTGCATTTTGCTGC---G-----T--TT
TTGGTCTGCAGATATGTCGAGCTTCGGAGGAGGGAAGGCCGGCGGCCGG-AAGCCCAAGCTGCTCTGA------------
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>chr2B_1_TraesCS2B01G466200
GGCGATCAGGTCGACCTAGGGCAGCCCATAGCCGTCGCGCGCCCCGACGGGGTCCCTCCCGGGCGTGTGGGGTTTCGGGT
CCTCAAAGCGCCCGCTGGATTGCCTGCGCACCGCGCTTCCGGCTGGATCTCCTTCGACGTGAGCTGTGATGCATCACCCT
CGATGTTGGAGATACACGATGACGTGTTCGTGTGCGAACACAAAGAAAGCCAAGCCAAGCATGCCAGGCCACACCACGCA
CAGTACGACACTACGATCCCTTTCACCATCGTCGTCGTGTTCCTGCATCGCAACGGTGGCAGGGTTCCTTCCATCCCACT
GAAGCCCTCCCGTTTCAGGCTCAGGTTCAGCACGCACTGCTTGCGCGTGGTTGTGACCGTCGCCCACACTTGGGCCACTG
CCGCAGCACAGCTGTGCACGCTGAATCGAACCTGCAGTCGTGTACCTGCCGCAGCCAACATGTGTCCTGAACAAGTTGCC
TGCAGCTCACAGTAAGCTTGCCTGCAGATCCAACCATCCCACTGGGCACTGGCCACTGACTGAAGCCCACCGCTTCGACG
TCGTTGTGACCGGCGGCCACACCCACACAGTCACGCTTGGGCCTTGCCCACTGGTGCAGCACAGCTTTGCACGCCGAACG
AAACGAACCTGCAGCGGACATGTGTTCTGAACAAGTTACCTCGAGGGAGGGAGGGGAGGGAGCTCCTTCTGGTTTTGGAC
C-TTTGCTTCGGAAAATGGAAAGGGCGGGCTC-CTCCCTCTCC------CTTG--GAGGCGCCTCACGTACAGTACTACT
CAAAGCGCCAAACTGTCG--TTAGCGCTAAGCAAA-TCGAAGCATACTCAA-AGTCAACGCGTGAGGTTCAGAGAAGCAT
AAG--AAAAGTCAGTAGAAATTGTAGCGTTGCC--------ATCTCGGAACTCGGTGGCCATAAGAAGTACGGAGACTCG
GCAAGTATCAGCCAGCGTACACATACCAACCCTGACGTG-----TAGTCA---------------------------GTA
CTAG-AGAGTCGAGAGAATGCAGAGGCCGGTGAGCACCCCGTCGTTCCCCGTCTTCGCGGACGAGGAGGGGGCGAAGGAC
CTGGAGGCCAAGCCGGAGAAGGCGCCCGCCGTCCGGCCGCCGGCGGTGACGGAGCGGTCCGTCCACCTCGTGCCGCTCAT
CGTCGTGCTCTGCTTCGTCGTCCTCTTCCTCTGCTCCCACGTCCCCTCCCCGTCGGGTACGTGCATCGCGCGTGT----A
TGCAATGCATGCAACGGACGTCTTTATACAGCTGTGCTGCTGATTCTGAGCTCTGCATTTTGCTGC---G-----T--TT
TTGGTCTGCAGATATGTCGAGCTTCGGAGGAGGGAAGGCCGGCGGCCGG-AAGCCCAAGCTGCTCTGACGCGGACCAAGG
AAGGAGACGGTCG--------TGACAAGAGCTCAAGAACTGAGCAAGTGATATGTCAAGGAAAA---AAATGTGAACGTT
TTCTGTTTTCTTTCTTGATCTCAGCTGTGTTAGACAGTAAAGCTGTACTGATCTCACTGCAGCAATAATAAAAC--GCAT
ACAGAACGCAACAGTATAATGCTCTGATGGTTCTCATCATGT-TGGTTTGGTTTCATGGTCCGGTGCCATTTGGTCACTC
GTAATTGTGCGGTGAACAAACCTCTGACCATTTCTTCGTTGAAGACTGAAGAGGGTATAAAATGCGGCCTACTTCTACAA
CCGTG-CTCGAC-AAATGTCCGGTGCCTGATGTTGCCATGCGATCGCACTTCCATTCGGCCACTCTTCACAGCAGAATAA
ATAAAC-----ACAAAGCATAAAAGAAGTTGTTTTCAGCAAAAGAATGAA-GCATGCCAGCAGCACTGTACCAAGGGAAC
T----CTTGCACGCCAACACTTCTGGCAACAACAAAAAAAC------------------TTAATTAGGCAATACAAGTAC
TCCTATCGGTGGTGGAATTATCCATTCAGTCCATTTGGGCCGCAAAAAATAACTGGGCTTATGACCTATTCACTGATCTA
TCAGTCTTGT----------------------------------------------------------AAAAACTCAGGA
GAAGA-AAAGAACACATCAGAGAAGTGAATATCATACGCAAACATTTTGACACCGCAAGTGCATGATAATATTGTTTGAT
CAATTAAAATGGCTGCTACAAATCCCAAACTCTTTCGGTCCTGATAAATTTCAACCTTCAAACAGGTGAATCACAATACA
GCAGCCACAACGCTACAGCCTGAATTAAACAACCCACCTCATATGTCTATTTACATTCATGTATCAGCCAGATCATCATA
GTATCAATCCCTGCGCAGGTTCCGGTTTCTTGGGAAGAGCAGTAGCAGGCGGTGGTGGAGACGCATCGCTGGAATCATCT
ACTGTAATGGGGAAAACTGCAGCGGTAGATATGGGGATATCTTCAGGGTTT
>chr2A_608
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-----------------------------------------------CCACTGGTGCAGCACAGCTCTGCACGCCC----
-AACGAACCTGCAGCGGACATGTGTTCTGGACAAGTTACCCGGAGCTGAGT-----------CTCCCTTTGGA----GAC
C-TTTGCTTCAGAAAATGGAAAGGGCCCCCTTACTTGCTTTCCCTTGTACT-G--GAGGCGCCTCTCG--------TACT
CAAAGCACCAAGCTGTTG--TTGGTGCTAAGCAAAATCGAGGCACGTGATCCAGCCGACGCGTGACATTCAGAGAAGCGT
AAA--AAAAATGCAGATATAGCCGGCGTGTTAGTGCTACGTATCTCGGAATTTGACGGCCATAATATAAG----------
--AAGTATCAGCCGGCTTGCACGTCCCAATCCGAGCGTAGCGTATACAGTCCCAGCC------------------GTGTA
GTCG-AGACACGAGAGGATGCAGAGGCCGGTGAGCTCCCCGTCGCTGCCCGCTTTCGAGGACGAGG------GGGAGGAC
CTGGAGGCCAAGCCGGAGAAGGCGCCCGCCGTCCG---------------------GTCCGTCCACCTCGTGCCGCTCAT
CGTCCTGCTCTGCTTCGTCGTCCTCTTCATCTGCTCCCACGTCCCCTCCCCCTCTGGTACCCGCGTCGCGCGTGT----G
TGTGATACATTCATCAAACGTCTTGATACAGCTGCGCTGCTGACTCTGAGCTCTGCATTATGCTGCGCTTTTTTCT--TT
TTGGTCTGCAGATATGTCGAGCTTCGGAGG---GAAGGCCGGGGGACGG-AAGCCCAAGCTGCTCTGACGCGGACCAAGG
AAGGAGACGATCA--------TGACAAGAGCTCAAGGACTGAGGACGCGATATGCCAA----AA---AGATGTGAACGTT
TTCTGCTTTCTTTCTTGATCTCAGCTGTGTTAGGCAGTAA-GCTGTACTGATCTCGCTGCACCGATAATAAAAC--ACAT
ACAGAACGCAATAGTGC--TGCTCTGATGATTCTCATCATGT-TGGTTT-----CATGGTCCGGTGCAATTTGGCCACTC
ATAATTGTGTAGTGAACAAACCTCTCACCATTTCCTCGCTGAAGA-------GGGTATATAATGCAGCCTAGTTCTATCA
CCGTG-GTCGACAAAATGTCCGGTGTCTGATGTTGCCACGTGGTCGAACTTCCACTCGGCCACTCTTCACAGCACAGCAC
AACAAATTAAAACAAAGAATAAAAGAAGTTGTTTTCAGCAAAAGAATGAAAGCATGCCAGCAGCACTCTACCGAGTGAAC
T----CTTGCACGCCCACACTTCTGGCTCCA--AAAAAAAC------------------TTAATTGGGCAACACAAGTAT
TCCTAACAGTGGTGGAATTATCCATTCAGTCCATTTGGGCCACAAAAAATAACTGGGCTTTTGACACATTCACTGATCTA
TCAGTCTTGT----------------------------------------------------------AAAAACTCTGGA
GAAGAAAAAAAACACATCAGAGAGGTGAATATCATACGCAAACATTGTGACACTGCAAGTGCATGATAATATTGTTTGAT
TAATTAAAATGGCTGTTACAAATTCCAAACTCTTTCGGTCCCGATAAATTTCAACCTTCAAACAGGTGAATTACAATACA
GCAACCACAACGTTGCAGCGTGAATTAAACAACCCATCTC--ATGTCTATTTACATTCATGTATCAGCGAGATCATCATA
GTATCAATCCCTGCGCAGGTTCCGGTTTCTTAGGAAGAGCAGCAGCGGGTGGCGGTGGAGACGCATCACTGGAATCCTCT
ACTGTAATGGGGAAAACTGCAGCGGTAGATATGGGGATATCTTCAGGGTTT
>chr2A_699
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----------------------------------------------------------GGAGCTCCTTTTGG-TTTGGAC
C-TTTGCTTCAGAGAATGGAAATGGCCCCCTTTCTTTCTTTCCCTTGGACTTG--GAGGCGCCTCAC-----GTACTACT
CAAAGCGCCAAACTTGTTGTTTACTGCTAAGCAAAATCG-------------AGCCAACGCGTGAGATTCAGAGAAGCGT
ACCC-----------AAAAGAAAGTGCACTG-----------TGACGGAATTCGGCGGCCATAAGAACTACGGTGGCTCG
GCAAGTATCAGCCGGCGTACACATCCCAATCCGAGCGTA-----TACCTTTCCCGCC------------------GTCTA
GCCAAAGACTCGAGAGAATGCAGAGGCCGGTGAGCACCCCGTCGTTCCCCGTCTTCGCGGACGAGGAGGAAAGGGAGGAC
CTGGAGGCCAAGCCGGAGAAGGCGCCCGCCGTCCGGCCGTCGGCGGCGACGGAGCGGTCCGTCCACCTCGTGCCGCTCAT
CGTCGTGCTCTGCTTCGTCGTCCTCTTCCTCTGCTCCCACGTCCCCTCCCCCTCTGGTACCCGCGTCGCCTGTGCGTAAC
TAC-------GCAGCAAACGTCTTGATACAGCTGTGCTGCTGATTCTGAGCTCTGCGTTATGCTGCGTTTTTTTTTA---
----TCTGCAGATATGTCAAGCTTCAGAGG---GAAGGCCGGGGGCCGG-AAGCCCAAGCTGCTCTGACGCGGACCAAGG
AAGGAGACGATCGTGACAGCCTGACAGGAGCTGAAGAACTGAGGACGCGATATGCCAA----AA---ATATGTGAAAGTT
TTCTGCTTTCTTTCTTGATCTCAGCTGTGTTAGACAGTAA-GCTGTACTGGTCTCGCTGCACCAATAATAAAGCGTGCAT
ACAGAACGCAA---------------------------------------------------------------------
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>chr2B_714
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-------------------------------------------------------------------------TTTGGAC
CTTTTGCTTCAGAAAATGGAAAGGGCTCCCTTACTTTCTTTCC------ATCGGAGAGGCGCCTCGCG--------TACT
CAAAGCACCAAACTGTTG--TTACTGCTAAGCAAAATCGAGGCACACTCAA-AGCCAACGCGTGAGATTCAGAGAAGCGT
TTTTAAAAAGTTTGAAACAGTAATAGTAATG-----------TCTCGGAATTCGGTGGCCATAAGAAGTACGGAGACTCG
GCGAGTATCAGCCAGCGTGCACGTCCCAATCCGAGCGTA-----TACCTTTCCCTCCCGGGCTCCCGGCGTGTAGGTATA
GTCG-AGAGTCGAGAGAATGCAGAGGCCGGTGAGCACCCCGTCGTTCCCCGTCTTCGCGGACGAGGAGGGGGCGGAGGAC
CTGGAGGCCAAGCCGGAGAAGGCGCCCGCCGTCCGGCCGTCGGCGGCCACAGAGCGGTCCGTCCACCTCGTGCCGCTCAT
CGTCGTGCTCTGCTTCGTCGTCGTCCTCCTCTGCTCCCACGTCCCATCCCCATCTGGTACGCGCGTCGCGTGTGTAGGCA
TGCAGTGCATGCAGCAGACGTCTTTATACAGCTGTGCTGTTGATTCTGAAATCTGCATTATGCTTC---G-----TTCTT
TTGGTCTGCAGATATGTCGAGCTTTGGAGG---GAATGCTGGGGGCCGGAAAGCCCAAGCTGCTCTGACGCGGACCAAGG
AAGGAGACGATCGTGACAGTAGTCG------TCAAGGACTGAGCCAGTGATATGCCAAGGAAAA---A------------
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>chr2D_714
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-------------------------------------------------------------------------TTTGGGC
C-TTTGCTTCAGAAAATGGAAAGGGCCCCCTTACTTTCTTTCC------ATCG--GATGCGCCTCGCG--------TACT
CAAAGCGCCAAACTGTTG--TTAGCGCTAAGCAAA-TCGAAGCACACTCAA-AGCCAACACGTGAGATTCAGAGAAGCGT
AAG--AAAAGTTAGAAACAGTAGTAGTGCTG-----------TCTCGGAATTCGGTGGCCATAAGAAGTACGGGAACTCG
GTGAGTATCAGCCAGCGTGCACGTCCCGATCCGAGCGTA-----TAGCTTTCCCTCCCGGG----CGGCGTGTAGGTATA
GTCG-AGAGTCGAGAGAATGCAGAGGCCGGTGAGCACCCCGTCGTTCCCCGTCTTCGCGGACGAGGAGGGGGCGGAGGAC
CTGGAGGCCAAGCCGGAGAAGGCGCCCGCCGTCCGGCCGTCGGCGGCCACGGAGCGGTCCGTCCACCTCGTGCCGCTCGT
CGTCGTGCTCTGCTTCCTCGTCCTCTTCCTCTGCTCCCACGTCCCCTCCCCTTCTGGTACGTGCGTCGCGTGTGTATGCA
TTCAG----TGCAGCAAACGTCTTTATACAGCTGTGCTGCTGATTCTGAGCTCTGCATTATGCTGCGTTG-----T--TT
TTTGCCTGCAGATATGTCGAGCTTCGGAGG---GAAGGCCGGGGGCCGG-AAGCCCAAGCTGCTCTGACGCGGACCAAGG
AAGGAGGCGACCG--------TGAGAAGAGCTCAAGAACTGAGCAAGTGATATGTCAAGGAAATACTAGATGTGAACGTT
TTCTGTTTTCTTTCTTGATCTCAGCTGTGTTAGACAGTAA-GCTGTACCGATCTCGCTGCAGCAATAATAAAGC--GCAC
ACACAACGCAATAGTAC--TGCTCTGATGGTTCTCATCATGTTTGCTTT-----CATGGTCCGGTGCCATTTGGTCACTC
GTAATTGTCCGGTGAACAAACCTCTGACCATTTCTTCGTTGAAGA-------GGGTATAAAATGTGGCCTACTTCTACAA
TACAACCTCGAC-AAATGTCCGGTGTCTGATGTTGCCACGCGGT-GCACTTCCATTCGGCCGCTCTTCACAGCACAGCAC
AACA--------CAAAGCATGACAGAAG-TGTTTTCAGCAATGAATGA-------------AGCACCCTACCAAGGGAAC
TCTTGCTTGCACGCCCTCACTTCTGGCTAGTTTTCTTTTTTCGAGAAATTTCTGGCTAGTTAATTAGGCAATACAAGTCT
TCCTATCAGTGGTGAAATTATCCATTCAGTCCAATTGGGCCACAAAAA-TAACTGGGCTTATGACACATTCACTGATCTA
TCAGTTTTGTCCTCTCAGAAGAAGAAGAAAACCATTCTCAAAAAAAAGAAACATCAAAAAAAGAGAAGAAAACCCCTCAA
AAAAAAGAAAAAAAAATCAGAGAAGTC----------------------------CAAGTGCATGATAATATTGTTTGAT
TAATTAAAATGGCTGCTACAAATTCCAAACTCTTTCGGTCCCAATAAATTTCAACCTTCAAACAGGTGAATCACAATACA
GCAACCACAACGCTACAGCCTGAATTAAACAACCCATCTC--ATGTCTATTTACATTCATGCATCAGCCAGATCATCATA
GTATCAATCCCTGCGCAGGTTCCGGTTTCTTAGGAGCAGCG------GGCGGTGGTGGAGACGCATCGCTGGAATCCTCT
ACTGTAATGGGGAAAACTGCAGCGGTAGATATGGGGATATCTTCAGGGTTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S--------SSSSS
S----------------------------S----------SS---SSSS-SSSSSSSS----------S---S-------
----------S---------------SSS--S---SS--S----------------------------SSSS--------
----------------S---------------------------S---------S-----------S-----------S-
-----------S--S-S----S------S--SS-----------------S-----------------------------
------------------------S----S--SSS---S--------SSS------------------------------
S-S-----------------------------------------------------------------------S-----
---------------------------------------S------S---------------------------------
---------------------------------------------------S--S---------S---------------
-------------S-S-------------------------------------------S--------------------
------------------------------SSS---------S-------------------------------------
---------S----------------------------------------------------------S-----------
----------------------------------------S--------------S------------------------
-----------S----SSS------------------------------SSSSS--------------------------
---------------------------------------------SSSSSSS----------------------------
-------------------------S------------S---S-------------------------------S-SS-S
-SS--S-------------------------------------------------------------S------------
---------------S-----------S---SS----------------------------------------------S
-------S---------------------------------S-----------------------SS-------------
----------------------------------------------------------------------------S---
---------S------------------------------------S------S--------------------------
S----------------------S-----------------S--------------------------------------
---S--------------------------------S---SS--------------------------------------
-------------------------------S----------S---S-----------------------------S---
---------------------------------------------------
>forward_280
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--------------------TTTCACCATCGTCGTCGTGT----------------------------------------
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>reverse_1340
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-----------------------------------------------------------TTGCTGCGTTTTTGGTCTGC-
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>forward_443
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-----------------------AATCGAACCTGCAGTCGTGT-------------------------------------
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>reverse_2207
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----------------------------------------------TTGACACCGCAAGTGCATGA--------------
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