Multiple sequence alignment - TraesCS2B01G441200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G441200 chr2B 100.000 2948 0 0 1 2948 632923789 632920842 0.000000e+00 5445.0
1 TraesCS2B01G441200 chr2B 93.238 281 9 7 703 975 10389044 10389322 3.540000e-109 405.0
2 TraesCS2B01G441200 chr2B 90.789 76 0 3 2072 2140 782533479 782533404 8.700000e-16 95.3
3 TraesCS2B01G441200 chr2D 93.872 1077 65 1 988 2063 533139210 533138134 0.000000e+00 1622.0
4 TraesCS2B01G441200 chr2D 94.363 408 18 3 2544 2948 533137763 533137358 3.230000e-174 621.0
5 TraesCS2B01G441200 chr2D 89.267 382 24 6 611 976 646570214 646570594 2.070000e-126 462.0
6 TraesCS2B01G441200 chr2D 89.516 372 27 10 2139 2507 533138119 533137757 7.440000e-126 460.0
7 TraesCS2B01G441200 chr2D 85.714 455 42 12 1 446 533148998 533148558 2.680000e-125 459.0
8 TraesCS2B01G441200 chr2A 93.253 667 44 1 1398 2063 677531277 677530611 0.000000e+00 981.0
9 TraesCS2B01G441200 chr2A 89.216 612 44 10 1 611 677532243 677531653 0.000000e+00 745.0
10 TraesCS2B01G441200 chr2A 95.078 386 19 0 976 1361 677531660 677531275 2.510000e-170 608.0
11 TraesCS2B01G441200 chr2A 90.968 310 25 2 2352 2660 65743929 65743622 5.880000e-112 414.0
12 TraesCS2B01G441200 chr2A 90.385 312 27 2 2344 2654 597847807 597848116 9.840000e-110 407.0
13 TraesCS2B01G441200 chr2A 92.509 267 16 2 2658 2921 677530396 677530131 2.140000e-101 379.0
14 TraesCS2B01G441200 chr2A 85.446 213 19 3 2139 2351 677530597 677530397 8.280000e-51 211.0
15 TraesCS2B01G441200 chr3A 90.133 375 20 6 611 975 733629941 733630308 3.440000e-129 472.0
16 TraesCS2B01G441200 chr3A 90.461 304 26 2 2352 2654 140004283 140004584 5.920000e-107 398.0
17 TraesCS2B01G441200 chr3A 92.537 67 1 2 2072 2137 64772859 64772922 3.130000e-15 93.5
18 TraesCS2B01G441200 chr5D 88.372 387 27 7 604 979 495884516 495884895 1.610000e-122 449.0
19 TraesCS2B01G441200 chr5D 87.460 311 29 5 676 978 525229175 525228867 1.680000e-92 350.0
20 TraesCS2B01G441200 chr5D 87.952 83 3 4 2070 2145 169535245 169535163 1.130000e-14 91.6
21 TraesCS2B01G441200 chr7D 88.624 378 26 5 608 975 484350361 484349991 7.500000e-121 444.0
22 TraesCS2B01G441200 chr7D 84.777 381 38 9 611 974 37456577 37456954 6.000000e-97 364.0
23 TraesCS2B01G441200 chr5B 87.566 378 29 6 615 975 15344678 15344302 3.510000e-114 422.0
24 TraesCS2B01G441200 chr5B 91.250 80 2 2 2067 2141 644352469 644352390 1.450000e-18 104.0
25 TraesCS2B01G441200 chr5B 90.361 83 1 3 2065 2140 650345295 650345377 5.200000e-18 102.0
26 TraesCS2B01G441200 chr5B 90.667 75 6 1 2068 2141 448441417 448441343 6.720000e-17 99.0
27 TraesCS2B01G441200 chr5A 91.234 308 23 3 2352 2657 366030804 366030499 1.630000e-112 416.0
28 TraesCS2B01G441200 chr5A 90.221 317 25 5 2352 2665 151067237 151066924 2.730000e-110 409.0
29 TraesCS2B01G441200 chr7A 91.419 303 23 2 2352 2653 620420679 620420379 2.110000e-111 412.0
30 TraesCS2B01G441200 chr7A 85.561 374 35 5 612 975 31695443 31695807 9.980000e-100 374.0
31 TraesCS2B01G441200 chr4A 91.419 303 23 2 2352 2653 58522056 58521756 2.110000e-111 412.0
32 TraesCS2B01G441200 chr4A 86.280 379 39 7 612 980 733994047 733994422 1.650000e-107 399.0
33 TraesCS2B01G441200 chr6D 91.118 304 23 3 2352 2654 353637901 353638201 2.730000e-110 409.0
34 TraesCS2B01G441200 chr6D 86.579 380 31 8 612 974 19346046 19345670 4.580000e-108 401.0
35 TraesCS2B01G441200 chr6D 84.293 382 26 13 611 975 9150838 9151202 2.810000e-90 342.0
36 TraesCS2B01G441200 chr3D 86.968 376 33 5 611 976 574572142 574571773 2.730000e-110 409.0
37 TraesCS2B01G441200 chr3D 85.564 381 35 9 611 974 25347757 25347380 5.960000e-102 381.0
38 TraesCS2B01G441200 chr3D 88.037 326 31 4 651 975 603534673 603534355 2.140000e-101 379.0
39 TraesCS2B01G441200 chr1A 91.118 304 24 2 2352 2654 350489591 350489892 2.730000e-110 409.0
40 TraesCS2B01G441200 chr7B 94.444 72 1 2 2072 2140 508830715 508830644 1.120000e-19 108.0
41 TraesCS2B01G441200 chr1B 88.000 75 6 3 2069 2140 657169259 657169185 5.240000e-13 86.1
42 TraesCS2B01G441200 chr1D 87.179 78 4 5 2065 2140 30517806 30517879 1.880000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G441200 chr2B 632920842 632923789 2947 True 5445.0 5445 100.000000 1 2948 1 chr2B.!!$R1 2947
1 TraesCS2B01G441200 chr2D 533137358 533139210 1852 True 901.0 1622 92.583667 988 2948 3 chr2D.!!$R2 1960
2 TraesCS2B01G441200 chr2A 677530131 677532243 2112 True 584.8 981 91.100400 1 2921 5 chr2A.!!$R2 2920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 629 0.178984 ACCCAGGGTTTTGGTTACCG 60.179 55.0 4.76 0.0 36.45 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2064 2106 0.325296 AACGGAGGGAGTAGATGGCA 60.325 55.0 0.0 0.0 0.0 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.400961 GGCACGCCTTCCTCTGCT 62.401 66.667 0.00 0.00 0.00 4.24
37 38 1.067821 CGCCTTCCTCTGCTAGGTAAG 59.932 57.143 5.70 7.74 46.62 2.34
63 65 2.649257 CGATCGCGGCGATTTCCTC 61.649 63.158 34.93 22.98 47.00 3.71
71 73 0.256177 GGCGATTTCCTCCCTCCTTT 59.744 55.000 0.00 0.00 0.00 3.11
80 82 1.625511 CTCCCTCCTTTGCTTTGCTT 58.374 50.000 0.00 0.00 0.00 3.91
81 83 1.966354 CTCCCTCCTTTGCTTTGCTTT 59.034 47.619 0.00 0.00 0.00 3.51
82 84 3.157087 CTCCCTCCTTTGCTTTGCTTTA 58.843 45.455 0.00 0.00 0.00 1.85
83 85 3.571590 TCCCTCCTTTGCTTTGCTTTAA 58.428 40.909 0.00 0.00 0.00 1.52
86 88 4.692155 CCCTCCTTTGCTTTGCTTTAATTG 59.308 41.667 0.00 0.00 0.00 2.32
110 112 2.518949 GTGCGGTTATGCTGAAACATG 58.481 47.619 0.00 0.00 35.36 3.21
118 120 1.210155 GCTGAAACATGTCGCCACC 59.790 57.895 0.00 0.00 0.00 4.61
119 121 1.497278 CTGAAACATGTCGCCACCG 59.503 57.895 0.00 0.00 0.00 4.94
121 123 3.322706 GAAACATGTCGCCACCGGC 62.323 63.158 0.00 0.00 46.75 6.13
142 144 4.452455 GGCAATCACGATTACTGATTAGGG 59.548 45.833 0.00 0.00 36.42 3.53
160 162 8.277197 TGATTAGGGAAGAATTTCATCATGTCT 58.723 33.333 4.23 0.00 34.90 3.41
171 173 3.678289 TCATCATGTCTGTTGAACTGGG 58.322 45.455 2.37 0.00 30.08 4.45
185 187 1.371467 ACTGGGGAACATGGTGATGA 58.629 50.000 0.00 0.00 33.36 2.92
200 202 4.141959 TGGTGATGACGATTGCTGATTAGA 60.142 41.667 0.00 0.00 0.00 2.10
212 214 7.148507 CGATTGCTGATTAGAGAAGAGTGTTTT 60.149 37.037 0.00 0.00 0.00 2.43
240 242 0.911769 TTGACTAGGAGGGCACATGG 59.088 55.000 0.00 0.00 0.00 3.66
263 265 7.715657 TGGATTGTGTATAAATTGATTCTGCC 58.284 34.615 0.00 0.00 0.00 4.85
264 266 7.341512 TGGATTGTGTATAAATTGATTCTGCCA 59.658 33.333 0.00 0.00 0.00 4.92
265 267 8.196771 GGATTGTGTATAAATTGATTCTGCCAA 58.803 33.333 0.00 0.00 0.00 4.52
266 268 9.241317 GATTGTGTATAAATTGATTCTGCCAAG 57.759 33.333 0.00 0.00 0.00 3.61
267 269 7.701539 TGTGTATAAATTGATTCTGCCAAGT 57.298 32.000 0.00 0.00 0.00 3.16
284 286 5.163561 TGCCAAGTTGTAGGAAACAGAAAAG 60.164 40.000 1.45 0.00 39.87 2.27
317 319 0.524392 TGCGTTTTGGCGAGTTTGTG 60.524 50.000 0.00 0.00 35.06 3.33
322 324 2.614983 GTTTTGGCGAGTTTGTGTAGGA 59.385 45.455 0.00 0.00 0.00 2.94
331 333 4.487019 GAGTTTGTGTAGGAGTAGCTGTC 58.513 47.826 0.00 0.00 0.00 3.51
332 334 3.258622 AGTTTGTGTAGGAGTAGCTGTCC 59.741 47.826 8.58 8.58 0.00 4.02
337 339 2.579400 TGTAGGAGTAGCTGTCCTGGTA 59.421 50.000 23.50 10.85 44.62 3.25
341 343 2.766828 GGAGTAGCTGTCCTGGTAATGT 59.233 50.000 9.25 0.00 0.00 2.71
342 344 3.430929 GGAGTAGCTGTCCTGGTAATGTG 60.431 52.174 9.25 0.00 0.00 3.21
343 345 3.441101 AGTAGCTGTCCTGGTAATGTGA 58.559 45.455 0.00 0.00 0.00 3.58
344 346 3.838317 AGTAGCTGTCCTGGTAATGTGAA 59.162 43.478 0.00 0.00 0.00 3.18
345 347 4.471386 AGTAGCTGTCCTGGTAATGTGAAT 59.529 41.667 0.00 0.00 0.00 2.57
346 348 3.878778 AGCTGTCCTGGTAATGTGAATC 58.121 45.455 0.00 0.00 0.00 2.52
347 349 3.264193 AGCTGTCCTGGTAATGTGAATCA 59.736 43.478 0.00 0.00 0.00 2.57
348 350 4.080129 AGCTGTCCTGGTAATGTGAATCAT 60.080 41.667 0.00 0.00 38.57 2.45
349 351 4.036027 GCTGTCCTGGTAATGTGAATCATG 59.964 45.833 0.00 0.00 36.81 3.07
372 374 8.642432 CATGTGATTACTACTGATTAGGGAAGA 58.358 37.037 0.00 0.00 31.13 2.87
374 376 8.475639 TGTGATTACTACTGATTAGGGAAGAAC 58.524 37.037 0.00 0.00 31.13 3.01
396 398 4.142902 ACGCCATTATGTCAGTTTTTCTCG 60.143 41.667 0.00 0.00 0.00 4.04
455 457 6.496565 AGATGGATTTTGTGTGGTATGGAAAA 59.503 34.615 0.00 0.00 0.00 2.29
459 461 6.589907 GGATTTTGTGTGGTATGGAAAACATC 59.410 38.462 0.00 0.00 41.03 3.06
466 468 4.809426 GTGGTATGGAAAACATCTAGGACG 59.191 45.833 0.00 0.00 41.03 4.79
472 474 5.235516 TGGAAAACATCTAGGACGAACTTC 58.764 41.667 0.00 0.00 0.00 3.01
474 476 5.932883 GGAAAACATCTAGGACGAACTTCTT 59.067 40.000 0.00 0.00 0.00 2.52
476 478 7.041303 GGAAAACATCTAGGACGAACTTCTTTT 60.041 37.037 0.00 0.00 0.00 2.27
477 479 7.803279 AAACATCTAGGACGAACTTCTTTTT 57.197 32.000 0.00 0.00 0.00 1.94
508 510 3.292460 ACTAGAGGCTGCTACTGTTAGG 58.708 50.000 0.00 0.00 0.00 2.69
511 513 0.818296 AGGCTGCTACTGTTAGGACG 59.182 55.000 0.00 0.00 0.00 4.79
534 536 2.103094 TGATTGAGGGACGTCATGGATC 59.897 50.000 18.91 13.22 0.00 3.36
612 614 8.837099 AATGGAAAATAGTTCATTCATACCCA 57.163 30.769 0.00 0.00 0.00 4.51
613 615 7.880160 TGGAAAATAGTTCATTCATACCCAG 57.120 36.000 0.00 0.00 0.00 4.45
614 616 6.833416 TGGAAAATAGTTCATTCATACCCAGG 59.167 38.462 0.00 0.00 0.00 4.45
615 617 6.265422 GGAAAATAGTTCATTCATACCCAGGG 59.735 42.308 2.85 2.85 0.00 4.45
616 618 5.994416 AATAGTTCATTCATACCCAGGGT 57.006 39.130 17.82 17.82 40.16 4.34
617 619 5.994416 ATAGTTCATTCATACCCAGGGTT 57.006 39.130 19.18 1.42 37.09 4.11
618 620 4.675063 AGTTCATTCATACCCAGGGTTT 57.325 40.909 19.18 5.98 37.09 3.27
619 621 5.010708 AGTTCATTCATACCCAGGGTTTT 57.989 39.130 19.18 1.47 37.09 2.43
620 622 4.772100 AGTTCATTCATACCCAGGGTTTTG 59.228 41.667 19.18 15.40 37.09 2.44
621 623 3.707316 TCATTCATACCCAGGGTTTTGG 58.293 45.455 19.18 4.24 37.09 3.28
622 624 3.076785 TCATTCATACCCAGGGTTTTGGT 59.923 43.478 19.18 5.48 37.09 3.67
623 625 3.621682 TTCATACCCAGGGTTTTGGTT 57.378 42.857 19.18 0.00 37.09 3.67
624 626 4.743705 TTCATACCCAGGGTTTTGGTTA 57.256 40.909 19.18 0.00 37.09 2.85
625 627 4.036941 TCATACCCAGGGTTTTGGTTAC 57.963 45.455 19.18 0.00 37.09 2.50
626 628 2.976068 TACCCAGGGTTTTGGTTACC 57.024 50.000 19.18 0.00 37.09 2.85
627 629 0.178984 ACCCAGGGTTTTGGTTACCG 60.179 55.000 4.76 0.00 36.45 4.02
628 630 1.529152 CCCAGGGTTTTGGTTACCGC 61.529 60.000 0.00 0.00 36.45 5.68
629 631 0.538746 CCAGGGTTTTGGTTACCGCT 60.539 55.000 0.00 0.00 36.49 5.52
630 632 1.324383 CAGGGTTTTGGTTACCGCTT 58.676 50.000 0.00 0.00 36.49 4.68
631 633 1.000717 CAGGGTTTTGGTTACCGCTTG 60.001 52.381 0.00 0.00 36.49 4.01
632 634 1.133730 AGGGTTTTGGTTACCGCTTGA 60.134 47.619 0.00 0.00 36.49 3.02
633 635 1.682323 GGGTTTTGGTTACCGCTTGAA 59.318 47.619 0.00 0.00 36.49 2.69
634 636 2.101082 GGGTTTTGGTTACCGCTTGAAA 59.899 45.455 0.00 0.00 36.49 2.69
635 637 3.243941 GGGTTTTGGTTACCGCTTGAAAT 60.244 43.478 0.00 0.00 36.49 2.17
636 638 4.373527 GGTTTTGGTTACCGCTTGAAATT 58.626 39.130 0.00 0.00 0.00 1.82
637 639 4.812091 GGTTTTGGTTACCGCTTGAAATTT 59.188 37.500 0.00 0.00 0.00 1.82
638 640 5.050634 GGTTTTGGTTACCGCTTGAAATTTC 60.051 40.000 11.41 11.41 0.00 2.17
639 641 4.920640 TTGGTTACCGCTTGAAATTTCA 57.079 36.364 16.91 16.91 34.92 2.69
640 642 4.920640 TGGTTACCGCTTGAAATTTCAA 57.079 36.364 27.39 27.39 44.31 2.69
656 658 9.921637 TGAAATTTCAAGATTTACCATGGTTAC 57.078 29.630 25.38 11.95 33.55 2.50
657 659 9.366216 GAAATTTCAAGATTTACCATGGTTACC 57.634 33.333 25.38 8.49 29.75 2.85
658 660 6.503589 TTTCAAGATTTACCATGGTTACCG 57.496 37.500 25.38 5.86 0.00 4.02
659 661 3.942748 TCAAGATTTACCATGGTTACCGC 59.057 43.478 25.38 9.39 0.00 5.68
660 662 3.637911 AGATTTACCATGGTTACCGCA 57.362 42.857 25.38 0.00 0.00 5.69
661 663 4.164843 AGATTTACCATGGTTACCGCAT 57.835 40.909 25.38 3.87 0.00 4.73
662 664 5.298989 AGATTTACCATGGTTACCGCATA 57.701 39.130 25.38 0.00 0.00 3.14
663 665 5.876357 AGATTTACCATGGTTACCGCATAT 58.124 37.500 25.38 4.11 0.00 1.78
664 666 6.303839 AGATTTACCATGGTTACCGCATATT 58.696 36.000 25.38 0.00 0.00 1.28
665 667 6.775629 AGATTTACCATGGTTACCGCATATTT 59.224 34.615 25.38 0.00 0.00 1.40
666 668 6.380095 TTTACCATGGTTACCGCATATTTC 57.620 37.500 25.38 0.00 0.00 2.17
667 669 2.875933 ACCATGGTTACCGCATATTTCG 59.124 45.455 13.00 0.00 0.00 3.46
673 675 2.983592 CCGCATATTTCGGCCCCC 60.984 66.667 0.00 0.00 40.46 5.40
688 690 2.303043 CCCCCTCGGTAAATGGACA 58.697 57.895 0.00 0.00 0.00 4.02
689 691 0.843984 CCCCCTCGGTAAATGGACAT 59.156 55.000 0.00 0.00 0.00 3.06
690 692 1.214424 CCCCCTCGGTAAATGGACATT 59.786 52.381 0.00 0.00 0.00 2.71
691 693 2.357777 CCCCCTCGGTAAATGGACATTT 60.358 50.000 14.02 14.02 42.95 2.32
692 694 2.949644 CCCCTCGGTAAATGGACATTTC 59.050 50.000 13.07 6.22 40.99 2.17
693 695 2.949644 CCCTCGGTAAATGGACATTTCC 59.050 50.000 13.07 12.63 40.99 3.13
742 744 5.804449 TTTTTGAATTCAAACGCTCGATG 57.196 34.783 28.78 0.00 44.56 3.84
743 745 4.481930 TTTGAATTCAAACGCTCGATGT 57.518 36.364 26.01 0.00 40.55 3.06
744 746 5.599359 TTTGAATTCAAACGCTCGATGTA 57.401 34.783 26.01 3.39 40.55 2.29
745 747 5.794687 TTGAATTCAAACGCTCGATGTAT 57.205 34.783 18.45 0.00 32.11 2.29
746 748 6.895607 TTGAATTCAAACGCTCGATGTATA 57.104 33.333 18.45 0.00 32.11 1.47
747 749 6.510746 TGAATTCAAACGCTCGATGTATAG 57.489 37.500 5.45 0.00 0.00 1.31
748 750 6.040247 TGAATTCAAACGCTCGATGTATAGT 58.960 36.000 5.45 0.00 0.00 2.12
749 751 7.197703 TGAATTCAAACGCTCGATGTATAGTA 58.802 34.615 5.45 0.00 0.00 1.82
750 752 7.703197 TGAATTCAAACGCTCGATGTATAGTAA 59.297 33.333 5.45 0.00 0.00 2.24
751 753 7.997107 ATTCAAACGCTCGATGTATAGTAAA 57.003 32.000 0.00 0.00 0.00 2.01
752 754 7.445900 TTCAAACGCTCGATGTATAGTAAAG 57.554 36.000 0.00 0.00 0.00 1.85
753 755 6.558009 TCAAACGCTCGATGTATAGTAAAGT 58.442 36.000 0.00 0.00 0.00 2.66
754 756 6.471198 TCAAACGCTCGATGTATAGTAAAGTG 59.529 38.462 0.00 0.00 0.00 3.16
755 757 5.496133 ACGCTCGATGTATAGTAAAGTGT 57.504 39.130 0.00 0.00 0.00 3.55
756 758 5.271625 ACGCTCGATGTATAGTAAAGTGTG 58.728 41.667 0.00 0.00 0.00 3.82
757 759 4.675565 CGCTCGATGTATAGTAAAGTGTGG 59.324 45.833 0.00 0.00 0.00 4.17
758 760 4.444720 GCTCGATGTATAGTAAAGTGTGGC 59.555 45.833 0.00 0.00 0.00 5.01
759 761 5.585820 TCGATGTATAGTAAAGTGTGGCA 57.414 39.130 0.00 0.00 0.00 4.92
760 762 5.588240 TCGATGTATAGTAAAGTGTGGCAG 58.412 41.667 0.00 0.00 0.00 4.85
761 763 4.209288 CGATGTATAGTAAAGTGTGGCAGC 59.791 45.833 0.00 0.00 0.00 5.25
762 764 4.545208 TGTATAGTAAAGTGTGGCAGCA 57.455 40.909 0.00 0.00 0.00 4.41
763 765 4.250464 TGTATAGTAAAGTGTGGCAGCAC 58.750 43.478 10.85 10.85 39.51 4.40
764 766 2.178912 TAGTAAAGTGTGGCAGCACC 57.821 50.000 13.96 0.00 40.04 5.01
765 767 0.474184 AGTAAAGTGTGGCAGCACCT 59.526 50.000 13.96 6.96 40.04 4.00
766 768 0.875059 GTAAAGTGTGGCAGCACCTC 59.125 55.000 13.96 0.00 40.04 3.85
767 769 0.472044 TAAAGTGTGGCAGCACCTCA 59.528 50.000 13.96 0.00 40.04 3.86
770 772 2.594536 TGTGGCAGCACCTCACAA 59.405 55.556 0.00 0.00 38.30 3.33
771 773 1.823470 TGTGGCAGCACCTCACAAC 60.823 57.895 0.00 0.00 38.30 3.32
772 774 1.823470 GTGGCAGCACCTCACAACA 60.823 57.895 0.00 0.00 40.22 3.33
773 775 1.151221 TGGCAGCACCTCACAACAT 59.849 52.632 0.00 0.00 40.22 2.71
774 776 1.174078 TGGCAGCACCTCACAACATG 61.174 55.000 0.00 0.00 40.22 3.21
775 777 1.080974 GCAGCACCTCACAACATGC 60.081 57.895 0.00 0.00 38.39 4.06
776 778 1.208358 CAGCACCTCACAACATGCG 59.792 57.895 0.00 0.00 42.98 4.73
777 779 2.126734 GCACCTCACAACATGCGC 60.127 61.111 0.00 0.00 0.00 6.09
778 780 2.174107 CACCTCACAACATGCGCG 59.826 61.111 0.00 0.00 0.00 6.86
779 781 2.280797 ACCTCACAACATGCGCGT 60.281 55.556 8.43 0.00 0.00 6.01
780 782 1.005512 ACCTCACAACATGCGCGTA 60.006 52.632 8.43 2.40 0.00 4.42
781 783 1.014044 ACCTCACAACATGCGCGTAG 61.014 55.000 8.43 0.00 0.00 3.51
782 784 0.735978 CCTCACAACATGCGCGTAGA 60.736 55.000 8.43 0.00 0.00 2.59
783 785 0.366871 CTCACAACATGCGCGTAGAC 59.633 55.000 8.43 0.00 0.00 2.59
784 786 0.319125 TCACAACATGCGCGTAGACA 60.319 50.000 8.43 0.00 0.00 3.41
785 787 0.510790 CACAACATGCGCGTAGACAA 59.489 50.000 8.43 0.00 0.00 3.18
786 788 0.511221 ACAACATGCGCGTAGACAAC 59.489 50.000 8.43 0.00 0.00 3.32
797 799 3.972706 CGTAGACAACGTTCCAATGAG 57.027 47.619 0.00 0.00 46.72 2.90
798 800 2.092211 CGTAGACAACGTTCCAATGAGC 59.908 50.000 0.00 0.00 46.72 4.26
799 801 2.550830 AGACAACGTTCCAATGAGCT 57.449 45.000 0.00 0.00 0.00 4.09
800 802 3.678056 AGACAACGTTCCAATGAGCTA 57.322 42.857 0.00 0.00 0.00 3.32
801 803 3.589988 AGACAACGTTCCAATGAGCTAG 58.410 45.455 0.00 0.00 0.00 3.42
802 804 3.006967 AGACAACGTTCCAATGAGCTAGT 59.993 43.478 0.00 0.00 0.00 2.57
803 805 4.219944 AGACAACGTTCCAATGAGCTAGTA 59.780 41.667 0.00 0.00 0.00 1.82
804 806 4.495422 ACAACGTTCCAATGAGCTAGTAG 58.505 43.478 0.00 0.00 0.00 2.57
805 807 3.166489 ACGTTCCAATGAGCTAGTAGC 57.834 47.619 14.62 14.62 42.84 3.58
921 923 7.940178 ATTTTCTCAAAATTTCGTGGTAACC 57.060 32.000 0.00 0.00 37.84 2.85
922 924 6.452494 TTTCTCAAAATTTCGTGGTAACCA 57.548 33.333 0.00 0.00 0.00 3.67
923 925 7.436970 ATTTTCTCAAAATTTCGTGGTAACCAC 59.563 33.333 0.00 0.00 43.06 4.16
933 935 3.605013 GGTAACCACGTTTACCGGT 57.395 52.632 13.98 13.98 41.25 5.28
934 936 1.428448 GGTAACCACGTTTACCGGTC 58.572 55.000 12.40 0.00 41.25 4.79
935 937 1.428448 GTAACCACGTTTACCGGTCC 58.572 55.000 12.40 0.00 42.24 4.46
936 938 0.320050 TAACCACGTTTACCGGTCCC 59.680 55.000 12.40 0.00 42.24 4.46
937 939 2.046988 CCACGTTTACCGGTCCCC 60.047 66.667 12.40 0.00 42.24 4.81
938 940 2.046988 CACGTTTACCGGTCCCCC 60.047 66.667 12.40 0.00 42.24 5.40
939 941 2.203832 ACGTTTACCGGTCCCCCT 60.204 61.111 12.40 0.00 42.24 4.79
940 942 2.285773 ACGTTTACCGGTCCCCCTC 61.286 63.158 12.40 0.00 42.24 4.30
941 943 2.580815 GTTTACCGGTCCCCCTCG 59.419 66.667 12.40 0.00 0.00 4.63
946 948 4.133373 CCGGTCCCCCTCGGTAGA 62.133 72.222 0.00 0.00 41.23 2.59
947 949 2.043652 CGGTCCCCCTCGGTAGAA 60.044 66.667 0.00 0.00 0.00 2.10
948 950 1.683365 CGGTCCCCCTCGGTAGAAA 60.683 63.158 0.00 0.00 0.00 2.52
949 951 1.047034 CGGTCCCCCTCGGTAGAAAT 61.047 60.000 0.00 0.00 0.00 2.17
950 952 0.468648 GGTCCCCCTCGGTAGAAATG 59.531 60.000 0.00 0.00 0.00 2.32
951 953 1.201424 GTCCCCCTCGGTAGAAATGT 58.799 55.000 0.00 0.00 0.00 2.71
952 954 1.138464 GTCCCCCTCGGTAGAAATGTC 59.862 57.143 0.00 0.00 0.00 3.06
953 955 0.468648 CCCCCTCGGTAGAAATGTCC 59.531 60.000 0.00 0.00 0.00 4.02
954 956 0.468648 CCCCTCGGTAGAAATGTCCC 59.531 60.000 0.00 0.00 0.00 4.46
955 957 1.200519 CCCTCGGTAGAAATGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
956 958 1.768870 CCCTCGGTAGAAATGTCCCAT 59.231 52.381 0.00 0.00 0.00 4.00
957 959 2.172717 CCCTCGGTAGAAATGTCCCATT 59.827 50.000 0.00 0.00 0.00 3.16
958 960 3.467803 CCTCGGTAGAAATGTCCCATTC 58.532 50.000 0.00 0.00 0.00 2.67
959 961 3.123804 CTCGGTAGAAATGTCCCATTCG 58.876 50.000 0.00 0.00 0.00 3.34
960 962 2.159014 TCGGTAGAAATGTCCCATTCGG 60.159 50.000 0.00 0.00 0.00 4.30
961 963 2.419574 CGGTAGAAATGTCCCATTCGGT 60.420 50.000 0.00 0.00 0.00 4.69
962 964 3.181473 CGGTAGAAATGTCCCATTCGGTA 60.181 47.826 0.00 0.00 0.00 4.02
963 965 4.681244 CGGTAGAAATGTCCCATTCGGTAA 60.681 45.833 0.00 0.00 0.00 2.85
964 966 4.573607 GGTAGAAATGTCCCATTCGGTAAC 59.426 45.833 0.00 0.00 0.00 2.50
965 967 3.617284 AGAAATGTCCCATTCGGTAACC 58.383 45.455 0.00 0.00 0.00 2.85
966 968 3.009695 AGAAATGTCCCATTCGGTAACCA 59.990 43.478 0.00 0.00 0.00 3.67
967 969 3.443145 AATGTCCCATTCGGTAACCAA 57.557 42.857 0.00 0.00 0.00 3.67
968 970 2.953284 TGTCCCATTCGGTAACCAAA 57.047 45.000 0.00 0.00 0.00 3.28
969 971 3.225177 TGTCCCATTCGGTAACCAAAA 57.775 42.857 0.00 0.00 0.00 2.44
970 972 2.885894 TGTCCCATTCGGTAACCAAAAC 59.114 45.455 0.00 0.00 0.00 2.43
971 973 2.229543 GTCCCATTCGGTAACCAAAACC 59.770 50.000 0.00 0.00 0.00 3.27
972 974 2.108601 TCCCATTCGGTAACCAAAACCT 59.891 45.455 0.00 0.00 34.66 3.50
973 975 2.894765 CCCATTCGGTAACCAAAACCTT 59.105 45.455 0.00 0.00 34.66 3.50
974 976 3.305744 CCCATTCGGTAACCAAAACCTTG 60.306 47.826 0.00 0.00 34.66 3.61
975 977 3.319689 CCATTCGGTAACCAAAACCTTGT 59.680 43.478 0.00 0.00 34.66 3.16
976 978 4.202172 CCATTCGGTAACCAAAACCTTGTT 60.202 41.667 0.00 0.00 34.66 2.83
977 979 4.635833 TTCGGTAACCAAAACCTTGTTC 57.364 40.909 0.00 0.00 34.66 3.18
978 980 3.618351 TCGGTAACCAAAACCTTGTTCA 58.382 40.909 0.00 0.00 34.66 3.18
979 981 4.208746 TCGGTAACCAAAACCTTGTTCAT 58.791 39.130 0.00 0.00 34.66 2.57
980 982 5.374921 TCGGTAACCAAAACCTTGTTCATA 58.625 37.500 0.00 0.00 34.66 2.15
981 983 5.239087 TCGGTAACCAAAACCTTGTTCATAC 59.761 40.000 0.00 0.00 34.66 2.39
982 984 5.563280 CGGTAACCAAAACCTTGTTCATACC 60.563 44.000 0.00 0.00 34.66 2.73
983 985 5.537295 GGTAACCAAAACCTTGTTCATACCT 59.463 40.000 0.00 0.00 33.97 3.08
984 986 5.529581 AACCAAAACCTTGTTCATACCTG 57.470 39.130 0.00 0.00 0.00 4.00
985 987 4.542697 ACCAAAACCTTGTTCATACCTGT 58.457 39.130 0.00 0.00 0.00 4.00
986 988 4.959839 ACCAAAACCTTGTTCATACCTGTT 59.040 37.500 0.00 0.00 0.00 3.16
1087 1089 1.478510 CACTAGTGAGTCCCGATTGCT 59.521 52.381 18.45 0.00 31.73 3.91
1098 1100 1.156736 CCGATTGCTCGTTTCTGGTT 58.843 50.000 0.00 0.00 43.49 3.67
1104 1106 1.772063 GCTCGTTTCTGGTTGCACGT 61.772 55.000 0.00 0.00 34.24 4.49
1119 1121 2.125753 CGTCTGCCAGAGCCACTC 60.126 66.667 0.00 0.00 38.69 3.51
1133 1135 1.567504 CCACTCAACAAGTCGTTCGT 58.432 50.000 0.00 0.00 35.45 3.85
1167 1169 3.548770 CTGGATAATGCAGCTCTTCCAA 58.451 45.455 0.00 0.00 33.15 3.53
1176 1178 2.494870 GCAGCTCTTCCAATTGAATGGT 59.505 45.455 7.12 0.00 41.46 3.55
1269 1271 4.586001 GTGCTGATTGACATAATTGGGGAT 59.414 41.667 0.00 0.00 0.00 3.85
1341 1343 0.312102 GGCTGTTTGTCAAGTGGAGC 59.688 55.000 0.00 0.00 0.00 4.70
1342 1344 1.024271 GCTGTTTGTCAAGTGGAGCA 58.976 50.000 0.00 0.00 0.00 4.26
1359 1400 2.952310 GAGCACCAAGAAAACAACCTCT 59.048 45.455 0.00 0.00 0.00 3.69
1360 1401 2.689983 AGCACCAAGAAAACAACCTCTG 59.310 45.455 0.00 0.00 0.00 3.35
1361 1402 2.427095 GCACCAAGAAAACAACCTCTGT 59.573 45.455 0.00 0.00 41.27 3.41
1371 1412 3.857157 ACAACCTCTGTTTCTAAGGCA 57.143 42.857 0.00 0.00 32.99 4.75
1372 1413 3.744660 ACAACCTCTGTTTCTAAGGCAG 58.255 45.455 0.00 0.00 32.99 4.85
1373 1414 3.136626 ACAACCTCTGTTTCTAAGGCAGT 59.863 43.478 0.00 0.00 32.99 4.40
1374 1415 3.686916 ACCTCTGTTTCTAAGGCAGTC 57.313 47.619 0.00 0.00 33.21 3.51
1375 1416 2.028930 ACCTCTGTTTCTAAGGCAGTCG 60.029 50.000 0.00 0.00 33.21 4.18
1376 1417 1.996191 CTCTGTTTCTAAGGCAGTCGC 59.004 52.381 0.00 0.00 37.44 5.19
1536 1577 0.614979 TCTACCGCTGCCCTCTCTTT 60.615 55.000 0.00 0.00 0.00 2.52
1538 1579 1.192146 TACCGCTGCCCTCTCTTTGT 61.192 55.000 0.00 0.00 0.00 2.83
1549 1590 2.038295 CCTCTCTTTGTGGTGAGCTTCT 59.962 50.000 0.00 0.00 0.00 2.85
1588 1630 9.806448 TTATCTGGGTTGCATATAATGTAATGT 57.194 29.630 0.00 0.00 37.22 2.71
1671 1713 3.117512 AGGATTCAAAACAGGACTGTGGT 60.118 43.478 5.63 0.00 44.13 4.16
1715 1757 1.066143 GTTCCCTGAGAAGGCGATTGA 60.066 52.381 0.00 0.00 34.29 2.57
1799 1841 1.341606 GAGCTTGAGGAACTTCGTCG 58.658 55.000 6.92 0.00 41.55 5.12
1805 1847 0.236711 GAGGAACTTCGTCGTCGTCA 59.763 55.000 1.33 0.00 41.55 4.35
1817 1859 1.137479 TCGTCGTCACCAGAAAAGGTT 59.863 47.619 0.00 0.00 40.77 3.50
1823 1865 2.484264 GTCACCAGAAAAGGTTGATCGG 59.516 50.000 0.00 0.00 40.77 4.18
1935 1977 1.230324 GCCAGATTCGTAGATTGGCC 58.770 55.000 0.00 0.00 46.27 5.36
1938 1980 2.614057 CCAGATTCGTAGATTGGCCAAC 59.386 50.000 23.27 14.88 35.04 3.77
1959 2001 3.149196 CGCCAATTAGCCCTCAATATGT 58.851 45.455 0.00 0.00 0.00 2.29
1961 2003 4.144297 GCCAATTAGCCCTCAATATGTCA 58.856 43.478 0.00 0.00 0.00 3.58
1966 2008 5.692115 TTAGCCCTCAATATGTCAAGTGA 57.308 39.130 0.00 0.00 0.00 3.41
1969 2011 5.513233 AGCCCTCAATATGTCAAGTGATTT 58.487 37.500 0.00 0.00 0.00 2.17
2043 2085 2.703416 TCAGTCATCAGCAACCATCAC 58.297 47.619 0.00 0.00 0.00 3.06
2048 2090 0.392998 ATCAGCAACCATCACGACCC 60.393 55.000 0.00 0.00 0.00 4.46
2063 2105 0.099436 GACCCGCAAATGTGATCAGC 59.901 55.000 0.00 0.00 0.00 4.26
2064 2106 0.322816 ACCCGCAAATGTGATCAGCT 60.323 50.000 0.00 0.00 0.00 4.24
2065 2107 0.099968 CCCGCAAATGTGATCAGCTG 59.900 55.000 7.63 7.63 0.00 4.24
2066 2108 0.524816 CCGCAAATGTGATCAGCTGC 60.525 55.000 9.47 1.87 34.09 5.25
2068 2110 0.528924 GCAAATGTGATCAGCTGCCA 59.471 50.000 9.47 6.69 32.43 4.92
2069 2111 1.136305 GCAAATGTGATCAGCTGCCAT 59.864 47.619 9.47 5.56 32.43 4.40
2070 2112 2.798499 GCAAATGTGATCAGCTGCCATC 60.798 50.000 9.47 8.69 32.43 3.51
2071 2113 2.688446 CAAATGTGATCAGCTGCCATCT 59.312 45.455 9.47 0.00 0.00 2.90
2072 2114 3.851458 AATGTGATCAGCTGCCATCTA 57.149 42.857 9.47 2.49 0.00 1.98
2073 2115 2.609427 TGTGATCAGCTGCCATCTAC 57.391 50.000 9.47 9.31 0.00 2.59
2076 2118 1.690893 TGATCAGCTGCCATCTACTCC 59.309 52.381 9.47 0.00 0.00 3.85
2077 2119 1.001860 GATCAGCTGCCATCTACTCCC 59.998 57.143 9.47 0.00 0.00 4.30
2078 2120 0.031716 TCAGCTGCCATCTACTCCCT 60.032 55.000 9.47 0.00 0.00 4.20
2079 2121 0.392336 CAGCTGCCATCTACTCCCTC 59.608 60.000 0.00 0.00 0.00 4.30
2080 2122 0.762461 AGCTGCCATCTACTCCCTCC 60.762 60.000 0.00 0.00 0.00 4.30
2081 2123 2.045280 CTGCCATCTACTCCCTCCG 58.955 63.158 0.00 0.00 0.00 4.63
2082 2124 0.757188 CTGCCATCTACTCCCTCCGT 60.757 60.000 0.00 0.00 0.00 4.69
2083 2125 0.325296 TGCCATCTACTCCCTCCGTT 60.325 55.000 0.00 0.00 0.00 4.44
2084 2126 0.389757 GCCATCTACTCCCTCCGTTC 59.610 60.000 0.00 0.00 0.00 3.95
2085 2127 1.041437 CCATCTACTCCCTCCGTTCC 58.959 60.000 0.00 0.00 0.00 3.62
2086 2128 0.669077 CATCTACTCCCTCCGTTCCG 59.331 60.000 0.00 0.00 0.00 4.30
2087 2129 0.549950 ATCTACTCCCTCCGTTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
2088 2130 0.549950 TCTACTCCCTCCGTTCCGAT 59.450 55.000 0.00 0.00 0.00 4.18
2089 2131 1.064166 TCTACTCCCTCCGTTCCGATT 60.064 52.381 0.00 0.00 0.00 3.34
2090 2132 1.755380 CTACTCCCTCCGTTCCGATTT 59.245 52.381 0.00 0.00 0.00 2.17
2091 2133 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
2092 2134 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
2093 2135 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
2094 2136 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
2096 2138 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
2097 2139 2.416431 CCTCCGTTCCGATTTACTCGTT 60.416 50.000 0.00 0.00 46.18 3.85
2098 2140 2.597305 CTCCGTTCCGATTTACTCGTTG 59.403 50.000 0.00 0.00 46.18 4.10
2099 2141 2.030007 TCCGTTCCGATTTACTCGTTGT 60.030 45.455 0.00 0.00 46.18 3.32
2100 2142 2.733026 CCGTTCCGATTTACTCGTTGTT 59.267 45.455 0.00 0.00 46.18 2.83
2101 2143 3.422603 CCGTTCCGATTTACTCGTTGTTG 60.423 47.826 0.00 0.00 46.18 3.33
2102 2144 3.426191 CGTTCCGATTTACTCGTTGTTGA 59.574 43.478 0.00 0.00 46.18 3.18
2103 2145 4.084952 CGTTCCGATTTACTCGTTGTTGAA 60.085 41.667 0.00 0.00 46.18 2.69
2104 2146 4.977741 TCCGATTTACTCGTTGTTGAAC 57.022 40.909 0.00 0.00 46.18 3.18
2105 2147 4.624015 TCCGATTTACTCGTTGTTGAACT 58.376 39.130 0.00 0.00 46.18 3.01
2106 2148 5.771469 TCCGATTTACTCGTTGTTGAACTA 58.229 37.500 0.00 0.00 46.18 2.24
2107 2149 6.215121 TCCGATTTACTCGTTGTTGAACTAA 58.785 36.000 0.00 0.00 46.18 2.24
2108 2150 6.700960 TCCGATTTACTCGTTGTTGAACTAAA 59.299 34.615 0.00 0.00 46.18 1.85
2109 2151 7.224362 TCCGATTTACTCGTTGTTGAACTAAAA 59.776 33.333 0.00 0.00 46.18 1.52
2110 2152 7.319615 CCGATTTACTCGTTGTTGAACTAAAAC 59.680 37.037 0.00 0.00 46.18 2.43
2111 2153 7.319615 CGATTTACTCGTTGTTGAACTAAAACC 59.680 37.037 0.00 0.00 42.56 3.27
2112 2154 6.981762 TTACTCGTTGTTGAACTAAAACCA 57.018 33.333 0.00 0.00 0.00 3.67
2113 2155 7.556733 TTACTCGTTGTTGAACTAAAACCAT 57.443 32.000 0.00 0.00 0.00 3.55
2114 2156 5.816919 ACTCGTTGTTGAACTAAAACCATG 58.183 37.500 0.00 0.00 0.00 3.66
2115 2157 5.587043 ACTCGTTGTTGAACTAAAACCATGA 59.413 36.000 0.00 0.00 0.00 3.07
2116 2158 5.812652 TCGTTGTTGAACTAAAACCATGAC 58.187 37.500 0.00 0.00 0.00 3.06
2117 2159 4.668837 CGTTGTTGAACTAAAACCATGACG 59.331 41.667 0.00 0.00 0.00 4.35
2118 2160 5.502706 CGTTGTTGAACTAAAACCATGACGA 60.503 40.000 0.00 0.00 0.00 4.20
2119 2161 5.666969 TGTTGAACTAAAACCATGACGAG 57.333 39.130 0.00 0.00 0.00 4.18
2120 2162 5.120399 TGTTGAACTAAAACCATGACGAGT 58.880 37.500 0.00 0.00 0.00 4.18
2121 2163 6.282167 TGTTGAACTAAAACCATGACGAGTA 58.718 36.000 0.00 0.00 0.00 2.59
2122 2164 6.762187 TGTTGAACTAAAACCATGACGAGTAA 59.238 34.615 0.00 0.00 0.00 2.24
2123 2165 7.280428 TGTTGAACTAAAACCATGACGAGTAAA 59.720 33.333 0.00 0.00 0.00 2.01
2124 2166 7.972832 TGAACTAAAACCATGACGAGTAAAT 57.027 32.000 0.00 0.00 0.00 1.40
2125 2167 8.025243 TGAACTAAAACCATGACGAGTAAATC 57.975 34.615 0.00 0.00 0.00 2.17
2135 2177 3.961576 GAGTAAATCGGACGGAGGG 57.038 57.895 0.00 0.00 0.00 4.30
2136 2178 1.396653 GAGTAAATCGGACGGAGGGA 58.603 55.000 0.00 0.00 0.00 4.20
2137 2179 1.337387 GAGTAAATCGGACGGAGGGAG 59.663 57.143 0.00 0.00 0.00 4.30
2146 2188 1.771255 GGACGGAGGGAGTAGGTAGTA 59.229 57.143 0.00 0.00 0.00 1.82
2191 2233 4.276926 ACTCCTTTGTTGCTGAATTCAGAC 59.723 41.667 34.43 24.86 46.59 3.51
2253 2295 8.413229 ACATGCACTGTTTAATTAGTTTGACTT 58.587 29.630 0.00 0.00 32.90 3.01
2322 2366 7.963981 ACATTTGTACATTTATCTGACTGTCG 58.036 34.615 0.00 0.00 0.00 4.35
2352 2396 2.514458 AGCCATACTGAAAACCTGGG 57.486 50.000 0.00 0.00 0.00 4.45
2353 2397 0.817654 GCCATACTGAAAACCTGGGC 59.182 55.000 0.00 0.00 0.00 5.36
2354 2398 1.474330 CCATACTGAAAACCTGGGCC 58.526 55.000 0.00 0.00 0.00 5.80
2355 2399 1.005924 CCATACTGAAAACCTGGGCCT 59.994 52.381 4.53 0.00 0.00 5.19
2356 2400 2.369394 CATACTGAAAACCTGGGCCTC 58.631 52.381 4.53 0.00 0.00 4.70
2359 2403 0.113190 CTGAAAACCTGGGCCTCCTT 59.887 55.000 4.53 0.00 0.00 3.36
2360 2404 0.560688 TGAAAACCTGGGCCTCCTTT 59.439 50.000 4.53 0.00 0.00 3.11
2361 2405 0.969149 GAAAACCTGGGCCTCCTTTG 59.031 55.000 4.53 0.00 0.00 2.77
2362 2406 0.471780 AAAACCTGGGCCTCCTTTGG 60.472 55.000 4.53 0.00 0.00 3.28
2363 2407 1.664956 AAACCTGGGCCTCCTTTGGT 61.665 55.000 4.53 0.56 34.93 3.67
2364 2408 1.664956 AACCTGGGCCTCCTTTGGTT 61.665 55.000 4.53 6.92 37.17 3.67
2365 2409 1.304464 CCTGGGCCTCCTTTGGTTC 60.304 63.158 4.53 0.00 0.00 3.62
2366 2410 1.460255 CTGGGCCTCCTTTGGTTCA 59.540 57.895 4.53 0.00 0.00 3.18
2367 2411 0.040204 CTGGGCCTCCTTTGGTTCAT 59.960 55.000 4.53 0.00 0.00 2.57
2368 2412 1.284785 CTGGGCCTCCTTTGGTTCATA 59.715 52.381 4.53 0.00 0.00 2.15
2369 2413 1.284785 TGGGCCTCCTTTGGTTCATAG 59.715 52.381 4.53 0.00 0.00 2.23
2370 2414 1.410224 GGGCCTCCTTTGGTTCATAGG 60.410 57.143 0.84 0.00 34.61 2.57
2371 2415 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
2372 2416 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
2373 2417 3.373110 GGCCTCCTTTGGTTCATAGGATT 60.373 47.826 0.00 0.00 39.94 3.01
2420 2465 6.715280 ACTTGTAGGAAATGAGATGACATGT 58.285 36.000 0.00 0.00 0.00 3.21
2473 2518 9.643693 GAAAAGATATGTCATTTGGTTCACATT 57.356 29.630 0.00 0.00 31.83 2.71
2474 2519 8.991243 AAAGATATGTCATTTGGTTCACATTG 57.009 30.769 0.00 0.00 31.83 2.82
2476 2521 8.806429 AGATATGTCATTTGGTTCACATTGTA 57.194 30.769 0.00 0.00 31.83 2.41
2481 2526 6.493115 TGTCATTTGGTTCACATTGTAGGAAT 59.507 34.615 0.00 0.00 0.00 3.01
2505 2550 6.748333 TTTTTCATTGAGTCTAGGCTCATG 57.252 37.500 26.91 23.46 43.99 3.07
2506 2551 5.426689 TTTCATTGAGTCTAGGCTCATGT 57.573 39.130 26.91 16.10 43.99 3.21
2507 2552 5.426689 TTCATTGAGTCTAGGCTCATGTT 57.573 39.130 26.91 12.69 43.99 2.71
2508 2553 5.426689 TCATTGAGTCTAGGCTCATGTTT 57.573 39.130 26.91 10.30 43.99 2.83
2509 2554 6.544928 TCATTGAGTCTAGGCTCATGTTTA 57.455 37.500 26.91 12.75 43.99 2.01
2510 2555 7.129457 TCATTGAGTCTAGGCTCATGTTTAT 57.871 36.000 26.91 14.49 43.99 1.40
2511 2556 7.568349 TCATTGAGTCTAGGCTCATGTTTATT 58.432 34.615 26.91 4.66 43.99 1.40
2512 2557 8.049117 TCATTGAGTCTAGGCTCATGTTTATTT 58.951 33.333 26.91 3.37 43.99 1.40
2513 2558 8.680903 CATTGAGTCTAGGCTCATGTTTATTTT 58.319 33.333 26.91 2.41 43.99 1.82
2514 2559 7.849804 TGAGTCTAGGCTCATGTTTATTTTC 57.150 36.000 23.07 0.00 40.23 2.29
2515 2560 6.823689 TGAGTCTAGGCTCATGTTTATTTTCC 59.176 38.462 23.07 0.00 40.23 3.13
2516 2561 6.963322 AGTCTAGGCTCATGTTTATTTTCCT 58.037 36.000 0.00 0.00 0.00 3.36
2517 2562 7.406104 AGTCTAGGCTCATGTTTATTTTCCTT 58.594 34.615 0.00 0.00 0.00 3.36
2518 2563 7.890655 AGTCTAGGCTCATGTTTATTTTCCTTT 59.109 33.333 0.00 0.00 0.00 3.11
2519 2564 7.970614 GTCTAGGCTCATGTTTATTTTCCTTTG 59.029 37.037 0.00 0.00 0.00 2.77
2520 2565 6.916360 AGGCTCATGTTTATTTTCCTTTGA 57.084 33.333 0.00 0.00 0.00 2.69
2521 2566 7.301868 AGGCTCATGTTTATTTTCCTTTGAA 57.698 32.000 0.00 0.00 0.00 2.69
2522 2567 7.734942 AGGCTCATGTTTATTTTCCTTTGAAA 58.265 30.769 0.00 0.00 38.69 2.69
2523 2568 8.377799 AGGCTCATGTTTATTTTCCTTTGAAAT 58.622 29.630 0.00 0.00 40.08 2.17
2524 2569 9.651913 GGCTCATGTTTATTTTCCTTTGAAATA 57.348 29.630 0.00 0.00 40.08 1.40
2536 2581 9.989296 TTTTCCTTTGAAATATGAAGGATAGGA 57.011 29.630 5.03 0.00 45.99 2.94
2537 2582 9.989296 TTTCCTTTGAAATATGAAGGATAGGAA 57.011 29.630 5.03 0.00 45.99 3.36
2538 2583 8.980481 TCCTTTGAAATATGAAGGATAGGAAC 57.020 34.615 0.15 0.00 42.90 3.62
2539 2584 7.998964 TCCTTTGAAATATGAAGGATAGGAACC 59.001 37.037 0.15 0.00 42.90 3.62
2540 2585 7.779798 CCTTTGAAATATGAAGGATAGGAACCA 59.220 37.037 0.00 0.00 41.97 3.67
2541 2586 9.189156 CTTTGAAATATGAAGGATAGGAACCAA 57.811 33.333 0.00 0.00 0.00 3.67
2542 2587 9.713684 TTTGAAATATGAAGGATAGGAACCAAT 57.286 29.630 0.00 0.00 0.00 3.16
2543 2588 8.924511 TGAAATATGAAGGATAGGAACCAATC 57.075 34.615 0.00 0.00 0.00 2.67
2587 2632 3.731431 TCCTATGAACCAAAGGGCTCTA 58.269 45.455 0.00 0.00 37.90 2.43
2669 2714 0.110486 GGAGTCCAACCTTTCCAGCA 59.890 55.000 3.60 0.00 0.00 4.41
2749 2797 7.814107 TGCAAATACTTTTGAATCCATGAGTTC 59.186 33.333 0.00 0.00 44.11 3.01
2827 2875 6.259608 AGGAAGCATCTGAATCTTACGAATTG 59.740 38.462 0.00 0.00 0.00 2.32
2863 2911 4.154015 CGAACATTTCTAGCATGAACACCA 59.846 41.667 0.00 0.00 0.00 4.17
2865 2913 4.397420 ACATTTCTAGCATGAACACCACA 58.603 39.130 0.00 0.00 0.00 4.17
2905 2953 5.225949 GCGAAACAAAATCTGAAGCTATTCG 59.774 40.000 0.00 0.00 38.34 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.360165 GCGATCGGAGAAACCTTACCTA 59.640 50.000 18.30 0.00 43.58 3.08
56 58 3.168292 CAAAGCAAAGGAGGGAGGAAAT 58.832 45.455 0.00 0.00 0.00 2.17
63 65 4.541973 ATTAAAGCAAAGCAAAGGAGGG 57.458 40.909 0.00 0.00 0.00 4.30
71 73 3.995705 GCACCATCAATTAAAGCAAAGCA 59.004 39.130 0.00 0.00 0.00 3.91
80 82 3.951037 AGCATAACCGCACCATCAATTAA 59.049 39.130 0.00 0.00 0.00 1.40
81 83 3.314913 CAGCATAACCGCACCATCAATTA 59.685 43.478 0.00 0.00 0.00 1.40
82 84 2.099592 CAGCATAACCGCACCATCAATT 59.900 45.455 0.00 0.00 0.00 2.32
83 85 1.677576 CAGCATAACCGCACCATCAAT 59.322 47.619 0.00 0.00 0.00 2.57
86 88 1.378531 TTCAGCATAACCGCACCATC 58.621 50.000 0.00 0.00 0.00 3.51
118 120 4.150627 CCTAATCAGTAATCGTGATTGCCG 59.849 45.833 5.37 0.00 43.11 5.69
119 121 4.452455 CCCTAATCAGTAATCGTGATTGCC 59.548 45.833 5.37 0.00 43.11 4.52
121 123 7.210174 TCTTCCCTAATCAGTAATCGTGATTG 58.790 38.462 5.37 0.38 43.11 2.67
122 124 7.361457 TCTTCCCTAATCAGTAATCGTGATT 57.639 36.000 0.22 0.22 44.86 2.57
126 128 8.265055 TGAAATTCTTCCCTAATCAGTAATCGT 58.735 33.333 0.00 0.00 0.00 3.73
142 144 8.295288 AGTTCAACAGACATGATGAAATTCTTC 58.705 33.333 0.00 2.34 46.07 2.87
160 162 1.216678 ACCATGTTCCCCAGTTCAACA 59.783 47.619 0.00 0.00 34.61 3.33
171 173 2.223340 GCAATCGTCATCACCATGTTCC 60.223 50.000 0.00 0.00 0.00 3.62
185 187 5.105554 ACACTCTTCTCTAATCAGCAATCGT 60.106 40.000 0.00 0.00 0.00 3.73
200 202 5.827797 TCAACAGCCATAAAAACACTCTTCT 59.172 36.000 0.00 0.00 0.00 2.85
212 214 2.771943 CCCTCCTAGTCAACAGCCATAA 59.228 50.000 0.00 0.00 0.00 1.90
240 242 9.241317 CTTGGCAGAATCAATTTATACACAATC 57.759 33.333 0.00 0.00 0.00 2.67
248 250 7.615365 TCCTACAACTTGGCAGAATCAATTTAT 59.385 33.333 0.00 0.00 0.00 1.40
253 255 4.365514 TCCTACAACTTGGCAGAATCAA 57.634 40.909 0.00 0.00 0.00 2.57
254 256 4.365514 TTCCTACAACTTGGCAGAATCA 57.634 40.909 0.00 0.00 0.00 2.57
259 261 3.476552 TCTGTTTCCTACAACTTGGCAG 58.523 45.455 0.00 0.00 36.02 4.85
260 262 3.569194 TCTGTTTCCTACAACTTGGCA 57.431 42.857 0.00 0.00 36.02 4.92
263 265 6.693315 TCCTTTTCTGTTTCCTACAACTTG 57.307 37.500 0.00 0.00 36.02 3.16
264 266 6.833933 ACATCCTTTTCTGTTTCCTACAACTT 59.166 34.615 0.00 0.00 36.02 2.66
265 267 6.365520 ACATCCTTTTCTGTTTCCTACAACT 58.634 36.000 0.00 0.00 36.02 3.16
266 268 6.635030 ACATCCTTTTCTGTTTCCTACAAC 57.365 37.500 0.00 0.00 36.02 3.32
267 269 6.264518 GGAACATCCTTTTCTGTTTCCTACAA 59.735 38.462 0.00 0.00 35.80 2.41
284 286 2.793278 AACGCACAAAAGGAACATCC 57.207 45.000 0.00 0.00 36.58 3.51
317 319 2.146920 ACCAGGACAGCTACTCCTAC 57.853 55.000 11.07 0.00 35.83 3.18
322 324 3.441101 TCACATTACCAGGACAGCTACT 58.559 45.455 0.00 0.00 0.00 2.57
331 333 6.704289 AATCACATGATTCACATTACCAGG 57.296 37.500 0.00 0.00 40.49 4.45
332 334 8.442632 AGTAATCACATGATTCACATTACCAG 57.557 34.615 10.34 0.00 43.17 4.00
337 339 9.842775 ATCAGTAGTAATCACATGATTCACATT 57.157 29.630 10.34 0.00 43.17 2.71
341 343 9.987272 CCTAATCAGTAGTAATCACATGATTCA 57.013 33.333 10.34 0.00 43.17 2.57
342 344 9.429359 CCCTAATCAGTAGTAATCACATGATTC 57.571 37.037 10.34 3.76 43.17 2.52
343 345 9.159254 TCCCTAATCAGTAGTAATCACATGATT 57.841 33.333 11.66 11.66 45.77 2.57
344 346 8.727100 TCCCTAATCAGTAGTAATCACATGAT 57.273 34.615 0.00 0.00 36.07 2.45
345 347 8.547481 TTCCCTAATCAGTAGTAATCACATGA 57.453 34.615 0.00 0.00 0.00 3.07
346 348 8.642432 TCTTCCCTAATCAGTAGTAATCACATG 58.358 37.037 0.00 0.00 0.00 3.21
347 349 8.783660 TCTTCCCTAATCAGTAGTAATCACAT 57.216 34.615 0.00 0.00 0.00 3.21
348 350 8.475639 GTTCTTCCCTAATCAGTAGTAATCACA 58.524 37.037 0.00 0.00 0.00 3.58
349 351 7.648510 CGTTCTTCCCTAATCAGTAGTAATCAC 59.351 40.741 0.00 0.00 0.00 3.06
372 374 5.616866 CGAGAAAAACTGACATAATGGCGTT 60.617 40.000 0.00 0.00 0.00 4.84
374 376 4.092821 TCGAGAAAAACTGACATAATGGCG 59.907 41.667 0.00 0.00 0.00 5.69
396 398 9.635520 AATTCAACTGAGATGATGTCATTTTTC 57.364 29.630 0.00 0.00 36.57 2.29
423 425 3.828451 CACACAAAATCCATCTGTTCCCT 59.172 43.478 0.00 0.00 0.00 4.20
495 497 1.816835 TCACCGTCCTAACAGTAGCAG 59.183 52.381 0.00 0.00 0.00 4.24
508 510 0.458025 GACGTCCCTCAATCACCGTC 60.458 60.000 3.51 0.00 38.03 4.79
511 513 1.656652 CATGACGTCCCTCAATCACC 58.343 55.000 14.12 0.00 0.00 4.02
534 536 4.570772 CCACTTTCCCAATATATATCGGCG 59.429 45.833 0.00 0.00 0.00 6.46
587 589 8.837099 TGGGTATGAATGAACTATTTTCCATT 57.163 30.769 0.00 0.00 32.54 3.16
588 590 7.506938 CCTGGGTATGAATGAACTATTTTCCAT 59.493 37.037 0.00 0.00 0.00 3.41
611 613 1.000717 CAAGCGGTAACCAAAACCCTG 60.001 52.381 0.00 0.00 33.10 4.45
612 614 1.133730 TCAAGCGGTAACCAAAACCCT 60.134 47.619 0.00 0.00 33.10 4.34
613 615 1.320507 TCAAGCGGTAACCAAAACCC 58.679 50.000 0.00 0.00 33.10 4.11
614 616 3.439895 TTTCAAGCGGTAACCAAAACC 57.560 42.857 0.00 0.00 0.00 3.27
615 617 5.520649 TGAAATTTCAAGCGGTAACCAAAAC 59.479 36.000 18.45 0.00 33.55 2.43
616 618 5.661458 TGAAATTTCAAGCGGTAACCAAAA 58.339 33.333 18.45 0.00 33.55 2.44
617 619 5.263968 TGAAATTTCAAGCGGTAACCAAA 57.736 34.783 18.45 0.00 33.55 3.28
618 620 4.920640 TGAAATTTCAAGCGGTAACCAA 57.079 36.364 18.45 0.00 33.55 3.67
619 621 4.920640 TTGAAATTTCAAGCGGTAACCA 57.079 36.364 26.01 3.89 41.88 3.67
630 632 9.921637 GTAACCATGGTAAATCTTGAAATTTCA 57.078 29.630 20.12 16.91 34.92 2.69
631 633 9.366216 GGTAACCATGGTAAATCTTGAAATTTC 57.634 33.333 20.12 11.41 31.50 2.17
632 634 8.032451 CGGTAACCATGGTAAATCTTGAAATTT 58.968 33.333 20.12 0.00 33.54 1.82
633 635 7.543756 CGGTAACCATGGTAAATCTTGAAATT 58.456 34.615 20.12 0.00 0.00 1.82
634 636 6.405397 GCGGTAACCATGGTAAATCTTGAAAT 60.405 38.462 20.12 0.00 0.00 2.17
635 637 5.106078 GCGGTAACCATGGTAAATCTTGAAA 60.106 40.000 20.12 0.00 0.00 2.69
636 638 4.396790 GCGGTAACCATGGTAAATCTTGAA 59.603 41.667 20.12 0.00 0.00 2.69
637 639 3.942748 GCGGTAACCATGGTAAATCTTGA 59.057 43.478 20.12 0.00 0.00 3.02
638 640 3.692101 TGCGGTAACCATGGTAAATCTTG 59.308 43.478 20.12 5.93 0.00 3.02
639 641 3.958018 TGCGGTAACCATGGTAAATCTT 58.042 40.909 20.12 3.39 0.00 2.40
640 642 3.637911 TGCGGTAACCATGGTAAATCT 57.362 42.857 20.12 4.24 0.00 2.40
641 643 6.569179 AATATGCGGTAACCATGGTAAATC 57.431 37.500 20.12 9.13 0.00 2.17
642 644 6.293735 CGAAATATGCGGTAACCATGGTAAAT 60.294 38.462 20.12 5.12 0.00 1.40
643 645 5.007823 CGAAATATGCGGTAACCATGGTAAA 59.992 40.000 20.12 6.80 0.00 2.01
644 646 4.512198 CGAAATATGCGGTAACCATGGTAA 59.488 41.667 20.12 0.11 0.00 2.85
645 647 4.059511 CGAAATATGCGGTAACCATGGTA 58.940 43.478 20.12 0.46 0.00 3.25
646 648 2.875933 CGAAATATGCGGTAACCATGGT 59.124 45.455 13.00 13.00 0.00 3.55
647 649 2.225491 CCGAAATATGCGGTAACCATGG 59.775 50.000 11.19 11.19 43.66 3.66
648 650 3.536158 CCGAAATATGCGGTAACCATG 57.464 47.619 8.67 0.00 43.66 3.66
670 672 0.843984 ATGTCCATTTACCGAGGGGG 59.156 55.000 0.00 0.00 43.62 5.40
671 673 2.729028 AATGTCCATTTACCGAGGGG 57.271 50.000 0.00 0.00 40.11 4.79
672 674 2.949644 GGAAATGTCCATTTACCGAGGG 59.050 50.000 5.29 0.00 44.26 4.30
720 722 5.277825 ACATCGAGCGTTTGAATTCAAAAA 58.722 33.333 30.07 11.41 46.08 1.94
721 723 4.854399 ACATCGAGCGTTTGAATTCAAAA 58.146 34.783 30.07 16.89 46.08 2.44
722 724 4.481930 ACATCGAGCGTTTGAATTCAAA 57.518 36.364 26.01 26.01 42.90 2.69
723 725 5.794687 ATACATCGAGCGTTTGAATTCAA 57.205 34.783 16.91 16.91 0.00 2.69
724 726 6.040247 ACTATACATCGAGCGTTTGAATTCA 58.960 36.000 3.38 3.38 0.00 2.57
725 727 6.512177 ACTATACATCGAGCGTTTGAATTC 57.488 37.500 0.00 0.00 0.00 2.17
726 728 7.997107 TTACTATACATCGAGCGTTTGAATT 57.003 32.000 0.00 0.00 0.00 2.17
727 729 7.705325 ACTTTACTATACATCGAGCGTTTGAAT 59.295 33.333 0.00 0.00 0.00 2.57
728 730 7.008901 CACTTTACTATACATCGAGCGTTTGAA 59.991 37.037 0.00 0.00 0.00 2.69
729 731 6.471198 CACTTTACTATACATCGAGCGTTTGA 59.529 38.462 0.00 0.00 0.00 2.69
730 732 6.252869 ACACTTTACTATACATCGAGCGTTTG 59.747 38.462 0.00 0.00 0.00 2.93
731 733 6.252869 CACACTTTACTATACATCGAGCGTTT 59.747 38.462 0.00 0.00 0.00 3.60
732 734 5.742453 CACACTTTACTATACATCGAGCGTT 59.258 40.000 0.00 0.00 0.00 4.84
733 735 5.271625 CACACTTTACTATACATCGAGCGT 58.728 41.667 0.00 0.00 0.00 5.07
734 736 4.675565 CCACACTTTACTATACATCGAGCG 59.324 45.833 0.00 0.00 0.00 5.03
735 737 4.444720 GCCACACTTTACTATACATCGAGC 59.555 45.833 0.00 0.00 0.00 5.03
736 738 5.588240 TGCCACACTTTACTATACATCGAG 58.412 41.667 0.00 0.00 0.00 4.04
737 739 5.585820 TGCCACACTTTACTATACATCGA 57.414 39.130 0.00 0.00 0.00 3.59
738 740 4.209288 GCTGCCACACTTTACTATACATCG 59.791 45.833 0.00 0.00 0.00 3.84
739 741 5.006746 GTGCTGCCACACTTTACTATACATC 59.993 44.000 0.00 0.00 41.67 3.06
740 742 4.876107 GTGCTGCCACACTTTACTATACAT 59.124 41.667 0.00 0.00 41.67 2.29
741 743 4.250464 GTGCTGCCACACTTTACTATACA 58.750 43.478 0.00 0.00 41.67 2.29
742 744 3.621715 GGTGCTGCCACACTTTACTATAC 59.378 47.826 0.00 0.00 43.88 1.47
743 745 3.517901 AGGTGCTGCCACACTTTACTATA 59.482 43.478 0.00 0.00 43.88 1.31
744 746 2.305927 AGGTGCTGCCACACTTTACTAT 59.694 45.455 0.00 0.00 43.88 2.12
745 747 1.697432 AGGTGCTGCCACACTTTACTA 59.303 47.619 0.00 0.00 43.88 1.82
746 748 0.474184 AGGTGCTGCCACACTTTACT 59.526 50.000 0.00 0.00 43.88 2.24
747 749 0.875059 GAGGTGCTGCCACACTTTAC 59.125 55.000 0.00 0.00 43.88 2.01
748 750 0.472044 TGAGGTGCTGCCACACTTTA 59.528 50.000 0.00 0.00 43.88 1.85
749 751 1.227102 TGAGGTGCTGCCACACTTT 59.773 52.632 0.00 0.00 43.88 2.66
750 752 2.918248 TGAGGTGCTGCCACACTT 59.082 55.556 0.00 0.00 43.88 3.16
753 755 1.823470 GTTGTGAGGTGCTGCCACA 60.823 57.895 5.52 5.52 43.88 4.17
754 756 1.174712 ATGTTGTGAGGTGCTGCCAC 61.175 55.000 0.00 0.00 40.61 5.01
755 757 1.151221 ATGTTGTGAGGTGCTGCCA 59.849 52.632 0.00 0.00 40.61 4.92
756 758 1.582968 CATGTTGTGAGGTGCTGCC 59.417 57.895 0.00 0.00 37.58 4.85
757 759 1.080974 GCATGTTGTGAGGTGCTGC 60.081 57.895 0.00 0.00 34.85 5.25
758 760 1.208358 CGCATGTTGTGAGGTGCTG 59.792 57.895 0.00 0.00 35.52 4.41
759 761 2.620112 GCGCATGTTGTGAGGTGCT 61.620 57.895 0.30 0.00 35.52 4.40
760 762 2.126734 GCGCATGTTGTGAGGTGC 60.127 61.111 0.30 0.00 0.00 5.01
761 763 1.288419 TACGCGCATGTTGTGAGGTG 61.288 55.000 5.73 0.00 31.89 4.00
762 764 1.005512 TACGCGCATGTTGTGAGGT 60.006 52.632 5.73 0.00 31.89 3.85
763 765 0.735978 TCTACGCGCATGTTGTGAGG 60.736 55.000 5.73 0.00 31.89 3.86
764 766 0.366871 GTCTACGCGCATGTTGTGAG 59.633 55.000 5.73 0.00 33.86 3.51
765 767 0.319125 TGTCTACGCGCATGTTGTGA 60.319 50.000 5.73 0.00 0.00 3.58
766 768 0.510790 TTGTCTACGCGCATGTTGTG 59.489 50.000 5.73 0.00 0.00 3.33
767 769 0.511221 GTTGTCTACGCGCATGTTGT 59.489 50.000 5.73 0.00 0.00 3.32
768 770 0.516322 CGTTGTCTACGCGCATGTTG 60.516 55.000 5.73 0.00 44.26 3.33
769 771 1.779061 CGTTGTCTACGCGCATGTT 59.221 52.632 5.73 0.00 44.26 2.71
770 772 3.459027 CGTTGTCTACGCGCATGT 58.541 55.556 5.73 0.00 44.26 3.21
778 780 3.326747 AGCTCATTGGAACGTTGTCTAC 58.673 45.455 5.00 0.00 0.00 2.59
779 781 3.678056 AGCTCATTGGAACGTTGTCTA 57.322 42.857 5.00 0.00 0.00 2.59
780 782 2.550830 AGCTCATTGGAACGTTGTCT 57.449 45.000 5.00 0.00 0.00 3.41
781 783 3.326747 ACTAGCTCATTGGAACGTTGTC 58.673 45.455 5.00 0.00 0.00 3.18
782 784 3.402628 ACTAGCTCATTGGAACGTTGT 57.597 42.857 5.00 0.00 0.00 3.32
783 785 3.307242 GCTACTAGCTCATTGGAACGTTG 59.693 47.826 5.00 0.00 38.45 4.10
784 786 3.522553 GCTACTAGCTCATTGGAACGTT 58.477 45.455 0.00 0.00 38.45 3.99
785 787 3.166489 GCTACTAGCTCATTGGAACGT 57.834 47.619 0.35 0.00 38.45 3.99
897 899 7.436970 GTGGTTACCACGAAATTTTGAGAAAAT 59.563 33.333 19.33 0.00 44.95 1.82
898 900 6.752815 GTGGTTACCACGAAATTTTGAGAAAA 59.247 34.615 19.33 0.12 44.95 2.29
899 901 6.267070 GTGGTTACCACGAAATTTTGAGAAA 58.733 36.000 19.33 0.45 44.95 2.52
900 902 5.823353 GTGGTTACCACGAAATTTTGAGAA 58.177 37.500 19.33 0.00 44.95 2.87
901 903 5.427036 GTGGTTACCACGAAATTTTGAGA 57.573 39.130 19.33 0.00 44.95 3.27
915 917 1.428448 GACCGGTAAACGTGGTTACC 58.572 55.000 7.34 15.41 46.54 2.85
916 918 1.428448 GGACCGGTAAACGTGGTTAC 58.572 55.000 7.34 0.00 42.24 2.50
917 919 0.320050 GGGACCGGTAAACGTGGTTA 59.680 55.000 7.34 0.00 42.24 2.85
918 920 1.071299 GGGACCGGTAAACGTGGTT 59.929 57.895 7.34 0.00 42.24 3.67
919 921 2.743060 GGGACCGGTAAACGTGGT 59.257 61.111 7.34 0.00 42.24 4.16
920 922 2.046988 GGGGACCGGTAAACGTGG 60.047 66.667 7.34 0.00 40.86 4.94
932 934 1.138464 GACATTTCTACCGAGGGGGAC 59.862 57.143 0.00 0.00 39.97 4.46
933 935 1.492764 GACATTTCTACCGAGGGGGA 58.507 55.000 0.00 0.00 39.97 4.81
934 936 0.468648 GGACATTTCTACCGAGGGGG 59.531 60.000 0.00 0.00 43.62 5.40
935 937 0.468648 GGGACATTTCTACCGAGGGG 59.531 60.000 0.00 0.00 40.11 4.79
936 938 1.200519 TGGGACATTTCTACCGAGGG 58.799 55.000 0.00 0.00 0.00 4.30
948 950 7.750636 AGGTTTTGGTTACCGAATGGGACAT 62.751 44.000 4.72 0.00 41.62 3.06
949 951 6.523375 AGGTTTTGGTTACCGAATGGGACA 62.523 45.833 4.72 0.00 41.60 4.02
950 952 2.229543 GGTTTTGGTTACCGAATGGGAC 59.770 50.000 4.72 0.36 40.75 4.46
951 953 2.108601 AGGTTTTGGTTACCGAATGGGA 59.891 45.455 4.72 0.00 40.69 4.37
952 954 2.521126 AGGTTTTGGTTACCGAATGGG 58.479 47.619 4.72 0.00 40.69 4.00
953 955 3.319689 ACAAGGTTTTGGTTACCGAATGG 59.680 43.478 4.72 0.00 40.69 3.16
954 956 4.577834 ACAAGGTTTTGGTTACCGAATG 57.422 40.909 4.72 3.24 40.69 2.67
955 957 4.645588 TGAACAAGGTTTTGGTTACCGAAT 59.354 37.500 4.72 0.00 40.69 3.34
956 958 4.015084 TGAACAAGGTTTTGGTTACCGAA 58.985 39.130 0.00 0.00 40.69 4.30
957 959 3.618351 TGAACAAGGTTTTGGTTACCGA 58.382 40.909 0.00 0.00 40.69 4.69
958 960 4.577834 ATGAACAAGGTTTTGGTTACCG 57.422 40.909 0.00 0.00 40.69 4.02
959 961 5.537295 AGGTATGAACAAGGTTTTGGTTACC 59.463 40.000 0.00 0.00 38.66 2.85
960 962 6.040054 ACAGGTATGAACAAGGTTTTGGTTAC 59.960 38.462 0.00 0.00 38.66 2.50
961 963 6.130569 ACAGGTATGAACAAGGTTTTGGTTA 58.869 36.000 0.00 0.00 38.66 2.85
962 964 4.959839 ACAGGTATGAACAAGGTTTTGGTT 59.040 37.500 0.00 0.00 38.66 3.67
963 965 4.542697 ACAGGTATGAACAAGGTTTTGGT 58.457 39.130 0.00 0.00 38.66 3.67
964 966 5.529581 AACAGGTATGAACAAGGTTTTGG 57.470 39.130 0.00 0.00 38.66 3.28
965 967 7.841915 AAAAACAGGTATGAACAAGGTTTTG 57.158 32.000 0.00 0.00 36.07 2.44
999 1001 2.235845 ACTCATCTGGCATCGACATG 57.764 50.000 0.00 0.00 0.00 3.21
1014 1016 5.559770 TCAGCAGGAAATATCACAAACTCA 58.440 37.500 0.00 0.00 0.00 3.41
1087 1089 0.179094 AGACGTGCAACCAGAAACGA 60.179 50.000 0.00 0.00 39.27 3.85
1104 1106 1.372683 GTTGAGTGGCTCTGGCAGA 59.627 57.895 17.68 17.68 39.19 4.26
1119 1121 1.062002 ACTTGCACGAACGACTTGTTG 59.938 47.619 0.00 0.00 42.09 3.33
1133 1135 2.499756 TATCCAGCGTCGCACTTGCA 62.500 55.000 21.09 0.00 42.21 4.08
1167 1169 3.192001 GCTCATGTGTCACACCATTCAAT 59.808 43.478 8.08 0.00 32.73 2.57
1176 1178 1.966354 AGAGTGAGCTCATGTGTCACA 59.034 47.619 21.47 8.40 42.59 3.58
1269 1271 1.602237 GAACGCCCTCCAGGAATCA 59.398 57.895 0.00 0.00 38.24 2.57
1376 1417 3.751246 CCGGTGTGCCATTGCTGG 61.751 66.667 0.00 0.00 46.17 4.85
1377 1418 2.563798 AACCGGTGTGCCATTGCTG 61.564 57.895 8.52 0.00 38.71 4.41
1378 1419 2.203480 AACCGGTGTGCCATTGCT 60.203 55.556 8.52 0.00 38.71 3.91
1379 1420 2.049248 CAACCGGTGTGCCATTGC 60.049 61.111 8.52 0.00 38.26 3.56
1380 1421 2.049248 GCAACCGGTGTGCCATTG 60.049 61.111 23.18 12.03 35.01 2.82
1381 1422 2.203480 AGCAACCGGTGTGCCATT 60.203 55.556 27.27 13.94 34.09 3.16
1382 1423 2.769652 ATCAGCAACCGGTGTGCCAT 62.770 55.000 27.27 20.07 41.52 4.40
1383 1424 3.490031 ATCAGCAACCGGTGTGCCA 62.490 57.895 27.27 19.10 41.52 4.92
1384 1425 2.672996 ATCAGCAACCGGTGTGCC 60.673 61.111 27.27 15.65 41.52 5.01
1385 1426 1.514678 TTCATCAGCAACCGGTGTGC 61.515 55.000 25.09 25.09 41.52 4.57
1386 1427 0.518636 CTTCATCAGCAACCGGTGTG 59.481 55.000 8.52 10.24 41.52 3.82
1387 1428 0.396435 TCTTCATCAGCAACCGGTGT 59.604 50.000 8.52 0.00 41.52 4.16
1388 1429 1.667724 GATCTTCATCAGCAACCGGTG 59.332 52.381 8.52 3.35 42.18 4.94
1389 1430 1.407437 GGATCTTCATCAGCAACCGGT 60.407 52.381 0.00 0.00 0.00 5.28
1390 1431 1.134280 AGGATCTTCATCAGCAACCGG 60.134 52.381 0.00 0.00 0.00 5.28
1391 1432 1.938577 CAGGATCTTCATCAGCAACCG 59.061 52.381 0.00 0.00 0.00 4.44
1392 1433 1.674962 GCAGGATCTTCATCAGCAACC 59.325 52.381 0.00 0.00 33.79 3.77
1393 1434 2.355132 CTGCAGGATCTTCATCAGCAAC 59.645 50.000 5.57 0.00 39.62 4.17
1394 1435 2.026542 ACTGCAGGATCTTCATCAGCAA 60.027 45.455 19.93 0.00 39.62 3.91
1395 1436 1.558294 ACTGCAGGATCTTCATCAGCA 59.442 47.619 19.93 0.00 38.53 4.41
1396 1437 1.941294 CACTGCAGGATCTTCATCAGC 59.059 52.381 19.93 0.00 34.05 4.26
1397 1438 3.196463 GTCACTGCAGGATCTTCATCAG 58.804 50.000 19.93 0.00 0.00 2.90
1438 1479 3.300765 GCAAGTTGGCCAGCTGCT 61.301 61.111 24.05 5.28 40.92 4.24
1536 1577 2.727123 TCCAAAAGAAGCTCACCACA 57.273 45.000 0.00 0.00 0.00 4.17
1538 1579 4.405358 ACATTTTCCAAAAGAAGCTCACCA 59.595 37.500 0.00 0.00 35.40 4.17
1549 1590 6.484977 GCAACCCAGATAAACATTTTCCAAAA 59.515 34.615 0.00 0.00 0.00 2.44
1588 1630 6.212589 TGGATCAATGTAGTGGTAGTTCAGAA 59.787 38.462 0.00 0.00 0.00 3.02
1627 1669 5.750067 CCTGACCAAAACAGAAACAAAGATG 59.250 40.000 0.00 0.00 37.54 2.90
1628 1670 5.656416 TCCTGACCAAAACAGAAACAAAGAT 59.344 36.000 0.00 0.00 37.54 2.40
1645 1687 3.503748 CAGTCCTGTTTTGAATCCTGACC 59.496 47.826 0.00 0.00 0.00 4.02
1715 1757 2.370281 CGTGAGGTAGTTCATGTGCT 57.630 50.000 0.00 0.00 31.02 4.40
1799 1841 2.557317 TCAACCTTTTCTGGTGACGAC 58.443 47.619 0.00 0.00 40.73 4.34
1805 1847 2.637872 TCTCCGATCAACCTTTTCTGGT 59.362 45.455 0.00 0.00 43.11 4.00
1817 1859 1.618343 TGACAACAGCTTCTCCGATCA 59.382 47.619 0.00 0.00 0.00 2.92
1823 1865 2.740981 CCATGACTGACAACAGCTTCTC 59.259 50.000 0.00 0.00 46.95 2.87
1875 1917 3.441222 CCTGATTGCAACAAGCTACATCA 59.559 43.478 0.00 0.00 45.94 3.07
1878 1920 3.138884 TCCTGATTGCAACAAGCTACA 57.861 42.857 0.00 0.00 45.94 2.74
1880 1922 3.954200 TCATCCTGATTGCAACAAGCTA 58.046 40.909 0.00 0.00 45.94 3.32
1935 1977 1.173043 TTGAGGGCTAATTGGCGTTG 58.827 50.000 7.78 0.00 42.84 4.10
1938 1980 3.149196 ACATATTGAGGGCTAATTGGCG 58.851 45.455 7.78 0.00 42.84 5.69
1959 2001 2.862541 CCTGGACCACAAATCACTTGA 58.137 47.619 0.00 0.00 38.50 3.02
1961 2003 1.145738 AGCCTGGACCACAAATCACTT 59.854 47.619 0.00 0.00 0.00 3.16
1966 2008 3.181434 TGAAACTAGCCTGGACCACAAAT 60.181 43.478 0.00 0.00 0.00 2.32
1969 2011 1.429930 TGAAACTAGCCTGGACCACA 58.570 50.000 0.00 0.00 0.00 4.17
2043 2085 0.374758 CTGATCACATTTGCGGGTCG 59.625 55.000 0.00 0.00 0.00 4.79
2048 2090 0.524816 GGCAGCTGATCACATTTGCG 60.525 55.000 20.43 0.00 36.67 4.85
2063 2105 0.757188 ACGGAGGGAGTAGATGGCAG 60.757 60.000 0.00 0.00 0.00 4.85
2064 2106 0.325296 AACGGAGGGAGTAGATGGCA 60.325 55.000 0.00 0.00 0.00 4.92
2065 2107 0.389757 GAACGGAGGGAGTAGATGGC 59.610 60.000 0.00 0.00 0.00 4.40
2066 2108 1.041437 GGAACGGAGGGAGTAGATGG 58.959 60.000 0.00 0.00 0.00 3.51
2086 2128 8.124199 TGGTTTTAGTTCAACAACGAGTAAATC 58.876 33.333 0.00 0.00 37.61 2.17
2087 2129 7.987649 TGGTTTTAGTTCAACAACGAGTAAAT 58.012 30.769 0.00 0.00 37.61 1.40
2088 2130 7.375106 TGGTTTTAGTTCAACAACGAGTAAA 57.625 32.000 0.00 0.00 37.61 2.01
2089 2131 6.981762 TGGTTTTAGTTCAACAACGAGTAA 57.018 33.333 0.00 0.00 37.61 2.24
2090 2132 6.762187 TCATGGTTTTAGTTCAACAACGAGTA 59.238 34.615 0.00 0.00 37.61 2.59
2091 2133 5.587043 TCATGGTTTTAGTTCAACAACGAGT 59.413 36.000 0.00 0.00 37.61 4.18
2092 2134 5.907391 GTCATGGTTTTAGTTCAACAACGAG 59.093 40.000 0.00 0.00 37.61 4.18
2093 2135 5.502706 CGTCATGGTTTTAGTTCAACAACGA 60.503 40.000 0.00 0.00 37.61 3.85
2094 2136 4.668837 CGTCATGGTTTTAGTTCAACAACG 59.331 41.667 0.00 0.00 37.61 4.10
2095 2137 5.812652 TCGTCATGGTTTTAGTTCAACAAC 58.187 37.500 0.00 0.00 0.00 3.32
2096 2138 5.587043 ACTCGTCATGGTTTTAGTTCAACAA 59.413 36.000 0.00 0.00 0.00 2.83
2097 2139 5.120399 ACTCGTCATGGTTTTAGTTCAACA 58.880 37.500 0.00 0.00 0.00 3.33
2098 2140 5.668558 ACTCGTCATGGTTTTAGTTCAAC 57.331 39.130 0.00 0.00 0.00 3.18
2099 2141 7.789273 TTTACTCGTCATGGTTTTAGTTCAA 57.211 32.000 0.00 0.00 0.00 2.69
2100 2142 7.148705 CGATTTACTCGTCATGGTTTTAGTTCA 60.149 37.037 0.00 0.00 42.56 3.18
2101 2143 7.171434 CGATTTACTCGTCATGGTTTTAGTTC 58.829 38.462 0.00 0.00 42.56 3.01
2102 2144 6.091713 CCGATTTACTCGTCATGGTTTTAGTT 59.908 38.462 0.00 0.00 46.18 2.24
2103 2145 5.579511 CCGATTTACTCGTCATGGTTTTAGT 59.420 40.000 0.00 0.00 46.18 2.24
2104 2146 5.808540 TCCGATTTACTCGTCATGGTTTTAG 59.191 40.000 0.00 0.00 46.18 1.85
2105 2147 5.577945 GTCCGATTTACTCGTCATGGTTTTA 59.422 40.000 0.00 0.00 46.18 1.52
2106 2148 4.390909 GTCCGATTTACTCGTCATGGTTTT 59.609 41.667 0.00 0.00 46.18 2.43
2107 2149 3.930848 GTCCGATTTACTCGTCATGGTTT 59.069 43.478 0.00 0.00 46.18 3.27
2108 2150 3.518590 GTCCGATTTACTCGTCATGGTT 58.481 45.455 0.00 0.00 46.18 3.67
2109 2151 2.479049 CGTCCGATTTACTCGTCATGGT 60.479 50.000 0.00 0.00 46.18 3.55
2110 2152 2.117137 CGTCCGATTTACTCGTCATGG 58.883 52.381 0.00 0.00 46.18 3.66
2111 2153 2.117137 CCGTCCGATTTACTCGTCATG 58.883 52.381 0.00 0.00 46.18 3.07
2112 2154 2.019249 TCCGTCCGATTTACTCGTCAT 58.981 47.619 0.00 0.00 46.18 3.06
2113 2155 1.399440 CTCCGTCCGATTTACTCGTCA 59.601 52.381 0.00 0.00 46.18 4.35
2114 2156 1.268437 CCTCCGTCCGATTTACTCGTC 60.268 57.143 0.00 0.00 46.18 4.20
2115 2157 0.737219 CCTCCGTCCGATTTACTCGT 59.263 55.000 0.00 0.00 46.18 4.18
2117 2159 1.337387 CTCCCTCCGTCCGATTTACTC 59.663 57.143 0.00 0.00 0.00 2.59
2118 2160 1.341778 ACTCCCTCCGTCCGATTTACT 60.342 52.381 0.00 0.00 0.00 2.24
2119 2161 1.109609 ACTCCCTCCGTCCGATTTAC 58.890 55.000 0.00 0.00 0.00 2.01
2120 2162 2.579873 CTACTCCCTCCGTCCGATTTA 58.420 52.381 0.00 0.00 0.00 1.40
2121 2163 1.400737 CTACTCCCTCCGTCCGATTT 58.599 55.000 0.00 0.00 0.00 2.17
2122 2164 0.467659 CCTACTCCCTCCGTCCGATT 60.468 60.000 0.00 0.00 0.00 3.34
2123 2165 1.150992 CCTACTCCCTCCGTCCGAT 59.849 63.158 0.00 0.00 0.00 4.18
2124 2166 0.982852 TACCTACTCCCTCCGTCCGA 60.983 60.000 0.00 0.00 0.00 4.55
2125 2167 0.534652 CTACCTACTCCCTCCGTCCG 60.535 65.000 0.00 0.00 0.00 4.79
2126 2168 0.550432 ACTACCTACTCCCTCCGTCC 59.450 60.000 0.00 0.00 0.00 4.79
2127 2169 3.786368 ATACTACCTACTCCCTCCGTC 57.214 52.381 0.00 0.00 0.00 4.79
2128 2170 5.551189 AGATAATACTACCTACTCCCTCCGT 59.449 44.000 0.00 0.00 0.00 4.69
2129 2171 5.881443 CAGATAATACTACCTACTCCCTCCG 59.119 48.000 0.00 0.00 0.00 4.63
2130 2172 5.653330 GCAGATAATACTACCTACTCCCTCC 59.347 48.000 0.00 0.00 0.00 4.30
2131 2173 6.486941 AGCAGATAATACTACCTACTCCCTC 58.513 44.000 0.00 0.00 0.00 4.30
2132 2174 6.471942 AGCAGATAATACTACCTACTCCCT 57.528 41.667 0.00 0.00 0.00 4.20
2133 2175 6.319405 GCTAGCAGATAATACTACCTACTCCC 59.681 46.154 10.63 0.00 0.00 4.30
2134 2176 7.114095 AGCTAGCAGATAATACTACCTACTCC 58.886 42.308 18.83 0.00 0.00 3.85
2135 2177 9.841295 ATAGCTAGCAGATAATACTACCTACTC 57.159 37.037 18.83 0.00 0.00 2.59
2136 2178 9.841295 GATAGCTAGCAGATAATACTACCTACT 57.159 37.037 18.83 0.00 0.00 2.57
2137 2179 9.616156 TGATAGCTAGCAGATAATACTACCTAC 57.384 37.037 18.83 0.00 0.00 3.18
2146 2188 7.364585 GGAGTTCCATGATAGCTAGCAGATAAT 60.365 40.741 17.82 5.59 35.64 1.28
2163 2205 3.228188 TCAGCAACAAAGGAGTTCCAT 57.772 42.857 0.28 0.00 38.89 3.41
2191 2233 9.144747 CATAGTTTCAGGGTAATCATATTCTCG 57.855 37.037 0.00 0.00 0.00 4.04
2301 2345 5.474825 TGCGACAGTCAGATAAATGTACAA 58.525 37.500 0.00 0.00 0.00 2.41
2351 2395 1.564348 TCCTATGAACCAAAGGAGGCC 59.436 52.381 0.00 0.00 34.46 5.19
2352 2396 3.584733 ATCCTATGAACCAAAGGAGGC 57.415 47.619 0.00 0.00 42.53 4.70
2353 2397 6.064717 CCTAAATCCTATGAACCAAAGGAGG 58.935 44.000 0.00 0.00 42.53 4.30
2354 2398 6.900194 TCCTAAATCCTATGAACCAAAGGAG 58.100 40.000 0.00 0.00 42.53 3.69
2355 2399 6.901615 TCCTAAATCCTATGAACCAAAGGA 57.098 37.500 0.00 0.00 43.38 3.36
2356 2400 9.813826 ATAATCCTAAATCCTATGAACCAAAGG 57.186 33.333 0.00 0.00 0.00 3.11
2448 2493 9.426837 CAATGTGAACCAAATGACATATCTTTT 57.573 29.630 0.00 0.00 33.61 2.27
2495 2540 8.055279 TCAAAGGAAAATAAACATGAGCCTAG 57.945 34.615 0.00 0.00 0.00 3.02
2514 2559 7.779798 TGGTTCCTATCCTTCATATTTCAAAGG 59.220 37.037 0.00 0.00 40.80 3.11
2515 2560 8.752005 TGGTTCCTATCCTTCATATTTCAAAG 57.248 34.615 0.00 0.00 0.00 2.77
2516 2561 9.713684 ATTGGTTCCTATCCTTCATATTTCAAA 57.286 29.630 0.00 0.00 0.00 2.69
2517 2562 9.354673 GATTGGTTCCTATCCTTCATATTTCAA 57.645 33.333 2.68 0.00 0.00 2.69
2518 2563 7.944554 GGATTGGTTCCTATCCTTCATATTTCA 59.055 37.037 19.71 0.00 41.78 2.69
2519 2564 8.341892 GGATTGGTTCCTATCCTTCATATTTC 57.658 38.462 19.71 0.00 41.78 2.17
2628 2673 5.076873 CCTTTGGTTTGGAGGAAGTTCATA 58.923 41.667 5.01 0.00 32.11 2.15
2669 2714 9.252962 GTTGAAAAATCATCATCTTTGTGTCTT 57.747 29.630 0.00 0.00 0.00 3.01
2749 2797 6.546428 TGTCTAGGAAAATCTCTAACTGGG 57.454 41.667 0.00 0.00 0.00 4.45
2827 2875 2.422276 ATGTTCGCCTTTTGTCTTGC 57.578 45.000 0.00 0.00 0.00 4.01
2863 2911 1.660560 GCGCCCTGCATCTTTCATGT 61.661 55.000 0.00 0.00 45.45 3.21
2865 2913 2.475466 CGCGCCCTGCATCTTTCAT 61.475 57.895 0.00 0.00 46.97 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.