>input_sequence_64738
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-----------------------------------------ATGTCGATGCCAGATGAGTTTGTGATATTTCCTGCTGAA
GGGAAGATTTCCAATGGGCCTGAGGGGGCACTAGTGAGTCCCGATTGCTCGTTTCTGGTTGCACGTCTGCCAGAGCCACT
CAACAAGTCGTTCGTGCAAGTGCGACGCTGGATAATGCAGCTCTTCCAATTGAATGGTGTGACACATGAGCTCACTCTGC
AGCACATTCTGTATGTCAGGAACAATCCCATGGCTCCTCCTTCCACCGTGCTGATTGACATAATTGGGGATGATTCCTGG
AGGGCGTTCCTGAATGTGGCATGGCGCCATGTTGGAGTTTTCAGGCTGTTTGTCAAGTGGAGCACCAAGAAAACAACCT-
--------------------------------------CTGTTTCTAAGGCAGTCGCCAGCAATGGCACACCGGTTGCTG
ATGAAGATCCTGCAGTGACAGATGAATCTGATGATGATAGCAGCTGGCCAACTTGCAAGCATGATAAACCTTGCACCATT
GAAACTTCATGGGACCGTCAAGACCCAGGGCGAAGGTTCTACCGCTGCCCTCTCTTTGTGGTGAGCTTCTTTTGGAAAAT
GTTTATCTGGGTTGCATATA-ATGTAATGTTCTGAACTACCACTACATTGATCCACAATGATAATCTACATCTTTGTTTC
TGTTTTGGTCAGGATTCAAAACAGGACTGTGGTTTCACCCAATGGTTGGACAGGAAGTTCCCTGAGAAGGCGATTGAGCA
CATGAACTACCTCACGGACAAGGTTGATTCACTCGAGCAGCAGGTTGACAACCTGAAGTGCGAGCTTGAGGAACTTCGTC
GTCGTCACCAGAAAAGGTTGATCGGAGAAGCTGTTGTCAGTCATGGAGACAAGTGCCCATGTGGCAAGATCCCTTGTGAT
GTAGCTTGTTGCAATCAGGATGAAAAGCCGCGCCCAAGCCAGATTCGTAGATTGGCCAACGCCAATTAG-----------
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-----------------------------------
>chr2B_1_TraesCS2B01G441200
CTTGCCAGGAGCCGGCACGCCTTCCTCTGCTAGGTAAG-GTTTCTCCGATCGCGGCGATTTCCTCCCTCCTTTGCTTTGC
TTTAATTGATGGTGCGGTTATGCTGAAACATGTCGCCACCGGCAATCACGATTACTGATTAGGGAAGAATTTCATCATGT
CTGTTGAACTGGGGAACATGGTGATGACGATTGCTGATTAGAGAAGAGTGTTTTTATGGCTGTTGACTAGGAGGGCACAT
GGATTGTGTATAAATTGATTCTGCCAAGTTGTAGGAAACAGAAAAGGATGTTCCTTTTGTGCGTTTTGGCGAGTTTGTGT
AGGAGTAGCTGTCCTGGTAATGTGAATCATGTGATTACTACTGATTAGGGAAGAACGCCATTATGTCAGTTTTTCTCGAA
AAATGACATCATCTCAGTTGAATTAGGGAACAGATGGATTTTGTGTGGTATGGAAAACATCTAGGACGAACTTCTTTTTT
CTCTCTAGACTAGAGGCTGCTACTGTTAGGACGGTGATTGAGGGACGTCATGGATCGCCGATATATATTGGGAAAGTGGA
AATTTAGTTTTAGAAGAAATATCACAAAAATGGAAAATAGTTCATTCATACCCAGGGTTTTGGTTACCGCTTGAAATTTC
AAGATTTACCATGGTTACCGCATATTTCGGCCCCCCTCGGTAAATGGACATTTCCAGCAAAAAAAATCAATTTTTTTGAA
TTTTTTGAATTCAAACGCTCGATGTATAGTAAAGTGTGGCAGCACCTCACAACATGCGCGTAGACAACGTTCCAATGAGC
TAGTAGCTCTTTTATGATAAATATAAGTTCAAATGCTATCTATATCTATTTTGAAAGAATTGGAATTCAAATTCAATTAT
AAATTTCATTTGTTCGAAATTTTCTCAAAATTTCGTGGTAACCACGTTTACCGGTCCCCCTCGGTAGAAATGTCCCATTC
GGTAACCAAAACCTTGTTCATACCTGTTTTTTTCTACAGGCATGTCGATGCCAGATGAGTTTGTGATATTTCCTGCTGAA
GGGAAGATTTCCAATGGGCCTGAGGGGGCACTAGTGAGTCCCGATTGCTCGTTTCTGGTTGCACGTCTGCCAGAGCCACT
CAACAAGTCGTTCGTGCAAGTGCGACGCTGGATAATGCAGCTCTTCCAATTGAATGGTGTGACACATGAGCTCACTCTGC
AGCACATTCTGTATGTCAGGAACAATCCCATGGCTCCTCCTTCCACCGTGCTGATTGACATAATTGGGGATGATTCCTGG
AGGGCGTTCCTGAATGTGGCATGGCGCCATGTTGGAGTTTTCAGGCTGTTTGTCAAGTGGAGCACCAAGAAAACAACCT-
--------------------------------------CTGTTTCTAAGGCAGTCGCCAGCAATGGCACACCGGTTGCTG
ATGAAGATCCTGCAGTGACAGATGAATCTGATGATGATAGCAGCTGGCCAACTTGCAAGCATGATAAACCTTGCACCATT
GAAACTTCATGGGACCGTCAAGACCCAGGGCGAAGGTTCTACCGCTGCCCTCTCTTTGTGGTGAGCTTCTTTTGGAAAAT
GTTTATCTGGGTTGCATATA-ATGTAATGTTCTGAACTACCACTACATTGATCCACAATGATAATCTACATCTTTGTTTC
TGTTTTGGTCAGGATTCAAAACAGGACTGTGGTTTCACCCAATGGTTGGACAGGAAGTTCCCTGAGAAGGCGATTGAGCA
CATGAACTACCTCACGGACAAGGTTGATTCACTCGAGCAGCAGGTTGACAACCTGAAGTGCGAGCTTGAGGAACTTCGTC
GTCGTCACCAGAAAAGGTTGATCGGAGAAGCTGTTGTCAGTCATGGAGACAAGTGCCCATGTGGCAAGATCCCTTGTGAT
GTAGCTTGTTGCAATCAGGATGAAAAGCCGCGCCCAAGCCAGATTCGTAGATTGGCCAACGCCAATTAGCCCTCAATATG
TCAAGTGATTTGTGGTCCAGGCTAGTTTCATTCTGCGATGAAGATATTTTGTCCATTTTCTTGTTCAGTCATCAGCAACC
ATCACGACCCGCAAATGTGATCAGCTGCCATCTACTCCCTCCGTTCCGATTTACTCGTTGTTGAACTAAAACCATGACGA
GTAAATCGGACGGAGGGAGTAGGTAGTATTATCTGCTAGCTATCATGGAACTCCTTTGTTGCTGAATTCAGACGAGAATA
TGATTACCCTGAAACTATGGTTTATGTAACATGCACTGTTTAATTAGTTTGACTTAGGCATTTTGCATGAGCATGA--TT
TTTTTTCTTTTTGTTGCACAACATTTGTACATTTATCTGACTGTCGCATCAAATTCAGCCATACTGAAAACCTGGGCCTC
CTTTGGTTCATAGGATTTAGGATTATCATAGAAATAGGAA-CTTGTAGGAAATGAGATGACATGTATCTCAAATCCTATG
AGTAAGAATAGGAAAAGATATGTCATTTGGTTCACATTGTAGGAATTTTTTCATTGAGTCTAGGCTCATGTTTATTTTCC
TTTGAAATATGAAGGATAGGAACCAATCCTATGTAGGAATAGGAATCCATTCCTATGAACCAAAGGGCTCTAAAGGAAAA
ATTCCTACAAAAAACCTATCCTATAGAGTTCCTATGAACTTCCTCCAAACCAAAGGAGTCCAACCTTTCCAGCAAGACAC
AAAGATGATGA---TTTTTCAACGAAAACAAAGGTGACAACTTAGAAAGCTGCAAATACTTTTGAATCCATGAGTTCCCA
GTTAGAGATTTTCCTAGACAACTATCACAATATATGATTTATCAGGGAAAGGAAGCATCTGAATCTTACGAATTGCAAGA
CAAAAGGCGAACATTTCTAGCATGAACACCACATGAAAGATGCAGGGCGCGAAACAAAATCTGAAGCTATTCGCTATTTA
TATTCTACGACCGATAAGTTCCCTATTTACAGTTT
>chr2A_1
CTTGCTGGGAGCCGGCACGCCTTCCTCTGCGAGGTAAAAGTTTCTCCGATCGCGGCGGTTTCCTTCCTCCTTCGCTTTGC
T----TTAATGGTGCGGTTATGCTGAAACATATCGCCACTAGTGATCTCGATTACTGATTAGGAAAGAATTTCATCATGT
CAGTTGAACTGGAGAACATGGTGATGGCGATTGCTGATTAGGGAAGAGTGTTTCTATGGCTGTTGACTAGGAGGGCACAT
GAATTGTGTGTAAACCGATTTAGC-----TGTAGGAAACAGAAAATGATGTTCCTTTTGTGCGTTTTGGCGAGTTTGTAT
AGGGGTAGCTGTTATGGTGATGA--------TGATTACTACTGATTAGGGAAGGATGCCATTATGTCAGTTTTTCTCCAA
AAATGACATCATCTCAGTTGAATTGGGGAACAGATGGATTTTGTGTGGTATGGAAA-CATGTAGGACAAACTTTTCTA-T
CTCTCTAGACTAGAGGTTGCTACTGTTAG-ACAGTGATTGAGGGACGTCATGGATTGCCGATATATATTGGGAAAGTGGA
AATTTAGTTTCAGAAGAAATAT-ACAAATGTGGAAAATAGTTCATTCATACCTTTA------------------------
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----------------------------TTTTTCTACAGGTATGTCGATGCCAGAAGAGTTTGTGATATTTCCTGCTGAA
GGGAAGATTTCCAATGGGCCCGAGGGGGCACTAGTGAGTCCCGATTGCCCGTTTCTGGTCGCACGGCTACCAGAGCCACT
GAACAAGTCGTTCGAGCAAGTGCGACGCTGGATAATGCAGCTCTTCCAGTTGAATGACGTGACACATGAGCTCACTCCGC
AGCACATTCTGTATGTCAGGAACAATCCCATGGCTCCTCCTTCCACCGTGCTGATTGACATAACTGGGGACGATTCCTGG
AGGGCGTTCCTGAATGTGGCATGGCGCCATGTTGGAGTTTTCAGGCTGTTTGTCAAGTGGAGTGCCAAGAAAACAACCT-
--------------------------------------C---------------------------------------TG
ATGAAGATCCTGCAGTGACAGATGAATCTGATGATGATGGCAGCTGGCCAACTTGCAAGCATGATAAACCTTGCACCATT
GAAACTTCATGGGACCGTCAAGACCCAGGGCGAAGGTTCTACCGCTGCCCTCTCTTCGCGGTGAGCTTCCTTTGGAAAAT
GTTTATCGGGGTTGCATATACATGTAATGGTCTTAACTATCACTGCATTGATCCACAATGATAATCTATGTCTTCGTTTC
TGTTTTTGTCAGGATTCAAAACAGGACTGTGGCTTCACCCAATGGCTGGACAGGAAGTTCCCTGAGAAGGCGATTGGGCA
CATGAACTACCTCACGGACAAGGTTGATTCACTCGGGCAGCAGGTCGACAACCTGAAGTGCGAGCTTGAGGAACTTCGTC
ATCGTTGCCAGAAAAGGTCGATCGCAGAAGCTGTTGTCAGTCATGGAGACAAGTGCCCATGTGGAAAGATCCCTTGCGAC
GCAGCTTGTTGCAATCAGGATGAAAAGCCGTGCCCAAGTCAGATTCGTAGATTGGCTAAGGCCAATTAGCCCTCAATATG
CCGAGTGGTTCGTGGTCCAGGCTAGTTTCATTTTGCGATGAAGATGTTTTGTCCATCATCTGGTTCAGTCATCAGCAACC
AGCATGACCTGCAAATGTAATCAGTGATGTAGCCATC-------------------------------------------
-------------------TAGGTAGTTTTATCTGCTAGTTTTCGTGGAACTCCCTTGTCGTTGAATTCAGATGAGAATA
TGATCATCCTAAAACTATGGTTTGTGTAATGTGCACTGTTTATTAG--TTGACTAAGTCATTTTGCATGAGCATG-----
-------TTTTTGTTGCACAACATATGTACATCTATCTGACTGTCACATCAAATTCAGCCATACTGAAAACCTG------
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-------------------------------------------------------------AACCTTTGCAGCCAGCCAC
AAAGATGATGTTGGTTTTTCAACGAAAACAAAGGTGACAACTTATAAAGCTGCAACTACTTTCGAATCCATGAGTTGCCA
GTTAGAGATTTTTCTAGACAACTATCACAATATATGATTTATCAGGGAAAGGAAGCATCTGAATCTTACGAATTACAAGA
CAAAAGGCGAACATTTCTAGCATGAAAACCGCCTGAAAGATGCAGGGTGCGGAACAAAATCTGAAGCTATTCCCTATTTA
TATTTAC----------------------------
>chr2D_988
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----------------------------TTTTTCTACAGGTATGACGATGCCAGAAGAGTTTGTGATATTTCCTGCTGAA
GGGAAGATTTCCAATGGGCCTGAGGGGGCACTAGTGAGTCCCGATTGCCCGTTTCTGGTCGCACGGCTGCCACAGCCACT
GAACAAGTCGTTCGAGCAAGTGCGACGCTGGATAATGCAGCTCTTCCAGTTGAATGGCGCGACACATGAGCTCACTCTGC
AGCACATTCTGTATGTCAGGAACAATCCCATGGCTCCTCCTTCCACCATGCTGATTGACATAATTGGGGACGATTCCTGG
AGGGCGTTCCTGAACGTGGCATGGCGCCATGTTGGAGTTTTCAGGCTGTTTGTCAAGTGGAGTGCCAAGAAGACAACCTC
TGTTTCTAAGGCAGTCGTCACCAATGGCACTCCGGTTGC---------------------------------------TG
ATGAAGATCCTGCAGTGACAGATGAATCTGATGATGATGGCAGCTGGCCAACTTGCAACCATGATAAACCTTGCACCATT
GAAACTTCATGGGACCGTCAAGACCCAGGGAGAAGGTTCTACCGCTGCCCTCTCTTCGCGGTGAGCTTCCTTTGGAAAAT
GTTTATCTGGGTTGTATATACATGAAATTGTCTGAACCATCACTGCATTGATCCACAATGATAATCTATGTCTTTGTTTC
TGTTTTTGTCAGGATTCAAAACAGGACTGTGGGTTCACCCAATGGCTGGACAGGAAGTTCCCTGAGAAGGCGACTGTACA
CATGAACTACCTCACCGACAAGGTTGATCCACTCGAGCAGCAGGTTGACAACCTGAAGTGCGAGCTTGAGGAACTTCGTC
ATCGTCGCCAGAAAAGGTCGGTTGCAGAAGCTGTTGTCAGTCATGGAGACAAGTGCCTATGTGGAAAGATCCCTTGCGAC
GCAGCTTGTTGCAATCAGGATGAAAAGCCGCGCCCAAGCCAGATTCGTAGATTGGCTAAGGCCAATTAGCCCTCGATATG
CTGAGTGGTTCGTGGTCCAGGCTAGTTTCATTCTGCGATGAAGATATTTTGTCCATTTTCTTGTTCAGTCATCAGCAACC
ATCATGACCTGCAAATGTGATCAGTGATCTAGCCATCT------------------------------------------
-------------------TAGGTAGTTTTATCTGCTAGCTATTGTGGAACTCCTTTGTTGCTGAATCCAGATGAGAATA
TGATTACCCTGAAACTATGGTTTATGTAACATGCATTGCTTAATTAGTTTGACTAAGGAATTTTGCATGAGCATGCCTTT
TTTTTCCTTTTTGTTGCACAACATCTGTACATTTATCTGACTGTCACATCAAATTCAGACATTCTGAAAATGGCATGTAT
CTCATAGGA--------TAGGATTATCATAGAAATAGGAAACTTGTAGGAAATGAGATGACATGCATCTCAAATCCTATG
AGTAAGAATAGGCAAAGATATGTCATTTGGTTCACATCATTGGAA-TTTTTTACTGAGTGTAGGC---------------
----------------------------CTATGTAGGAATAGGAATCCATTCCTATGAACCAAAGGGCTCT-AAGGAAAA
ATTCCAACAAAAATCCTATC-TATAGAATTCCGATGAAATTCCTCCAAACCAAAGGAGTCCAACCTTTCCAGCCAGACAC
AAAGATGATGATGCTTTTTCAATGAAATCAAAGGTGACAACTTAGAAAGCTGCAAATACTTTTGAATCCATGAGTTGCCA
GTTAGAGATTTTCCTAGATAACTATCACAATATATGATTTATCAGGGAAAGGAAGCATCTGAATCTTACAAATTACAAAA
CAAAAGGCGAACATTTCTAGCATGAACACCGCCTGAAAGATGCGGGGCGCGAAACAAAATCTGAAGCTATTCCCTATTTA
TATTCTACGATCGATAAGTTCCCTATTTACAGTTT
>SNPs
-----SS-----------------------S------S-------------------S------S-------S-------
-SSSS--S-----------------------S-------SS-SS---S---------------S----------------
-S----------S-------------S--------------S-----------S--------------------------
-S-------S----SS----SS--SSSSS----------------S--------------------------------S-
---S--------SS----S---SSSSSSSSS----------------------S-S---------------------S--
------------------------S-------------------------------S---S------S-----S-S-SS-
----------------S------------S--S----------------------S------------------------
----------S-----------S-----SS----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S--------------S------------------------
------------------------------------------------S----------S-----S--------------
S-------------S---------------------------------S--------S----------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------SS----------------
---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--------------------------------------S-----------------------------------------
--------------------------------------------------------S-S----------S----------
-----------------------------S---------S----S-----------------------SS----------
------S-------------------------S------------S------------------------------S---
--------------------------------------------------------------------------------
S-----S-----------S-----S---------------------------------------S-----------S--S
-S------------------------------------------------------S--S--------------------
S-S----S--S---------------------------------------------------------------------
----S----S--------------SSSS-SSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS--------S----------------S---------------------------S-------
------------------------------------------------------S--------------------S----
-----S------------------S--------------------S----------------------------SSSSSS
--SSSSSSSSSSSSSSS-----------------------------------------------S---------------
------------S------------------------SS-S----S-----S-S-----S-----SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------S--------
-----S-------S------S------S----S-----S----------------------------------S------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------S-----
------------------------------S-S---------------------------------------S-------
----------S------------------------
>forward_629
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-------------------------------------------------ACCCAGGGTTTTGGTTACCG-----------
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>reverse_2106
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-------------------------TGCCATCTACTCCCTCCGTT-----------------------------------
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-----------------------------------
