Multiple sequence alignment - TraesCS2B01G436400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G436400 chr2B 100.000 2483 0 0 1 2483 627150357 627152839 0.000000e+00 4586.0
1 TraesCS2B01G436400 chr2B 100.000 76 0 0 1937 2012 627152217 627152292 9.260000e-30 141.0
2 TraesCS2B01G436400 chr2B 100.000 76 0 0 1861 1936 627152293 627152368 9.260000e-30 141.0
3 TraesCS2B01G436400 chr2B 90.909 55 2 3 2399 2450 627152698 627152752 1.230000e-08 71.3
4 TraesCS2B01G436400 chr2B 90.909 55 2 3 2342 2396 627152755 627152806 1.230000e-08 71.3
5 TraesCS2B01G436400 chr2D 94.659 1292 47 13 584 1861 528806853 528808136 0.000000e+00 1984.0
6 TraesCS2B01G436400 chr2D 89.318 337 31 3 1965 2297 528808198 528808533 3.820000e-113 418.0
7 TraesCS2B01G436400 chr2D 88.293 205 12 5 2291 2483 528808593 528808797 4.130000e-58 235.0
8 TraesCS2B01G436400 chr2A 91.574 1258 76 16 700 1936 673369932 673371180 0.000000e+00 1709.0
9 TraesCS2B01G436400 chr2A 91.270 252 11 6 2243 2483 673371368 673371619 1.420000e-87 333.0
10 TraesCS2B01G436400 chr2A 85.393 267 21 12 1940 2203 673371108 673371359 6.810000e-66 261.0
11 TraesCS2B01G436400 chr5B 83.607 122 12 4 4 117 165121349 165121228 9.390000e-20 108.0
12 TraesCS2B01G436400 chr5B 84.821 112 7 5 1 103 294747986 294747876 1.210000e-18 104.0
13 TraesCS2B01G436400 chr5B 85.417 96 11 1 25 117 515989399 515989494 2.030000e-16 97.1
14 TraesCS2B01G436400 chr7D 82.540 126 13 4 1 117 367861583 367861458 4.370000e-18 102.0
15 TraesCS2B01G436400 chr4D 81.600 125 15 3 1 117 393106628 393106504 2.030000e-16 97.1
16 TraesCS2B01G436400 chr4D 81.481 108 15 1 13 115 486800020 486799913 1.580000e-12 84.2
17 TraesCS2B01G436400 chr7A 80.800 125 16 4 1 117 462116722 462116598 9.460000e-15 91.6
18 TraesCS2B01G436400 chr6A 81.301 123 14 3 4 117 358409222 358409100 9.460000e-15 91.6
19 TraesCS2B01G436400 chr6D 79.528 127 15 5 1 117 353042305 353042180 2.050000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G436400 chr2B 627150357 627152839 2482 False 1002.120000 4586 96.363600 1 2483 5 chr2B.!!$F1 2482
1 TraesCS2B01G436400 chr2D 528806853 528808797 1944 False 879.000000 1984 90.756667 584 2483 3 chr2D.!!$F1 1899
2 TraesCS2B01G436400 chr2A 673369932 673371619 1687 False 767.666667 1709 89.412333 700 2483 3 chr2A.!!$F1 1783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.032130 TGAACACAGGAGCAGACGTC 59.968 55.0 7.70 7.70 0.0 4.34 F
103 104 0.170116 CACAGGAGCAGACGTCTCTC 59.830 60.0 24.81 24.81 0.0 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1332 1339 0.243907 ACATCCACGAGAACACGGAG 59.756 55.000 0.0 0.0 37.61 4.63 R
1788 1802 1.893808 CAGTTGCACACTTCGCCCT 60.894 57.895 0.0 0.0 30.92 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.872603 ACCAGTGGTGCTTGGCGA 61.873 61.111 15.86 0.00 32.98 5.54
18 19 3.357079 CCAGTGGTGCTTGGCGAC 61.357 66.667 0.00 0.00 0.00 5.19
19 20 2.591429 CAGTGGTGCTTGGCGACA 60.591 61.111 0.00 0.00 39.83 4.35
33 34 3.680490 TGGCGACAAATGATTTGGTAGA 58.320 40.909 20.69 0.00 44.81 2.59
34 35 3.438781 TGGCGACAAATGATTTGGTAGAC 59.561 43.478 20.69 13.77 44.81 2.59
35 36 3.485216 GGCGACAAATGATTTGGTAGACG 60.485 47.826 20.69 16.71 44.81 4.18
36 37 3.369756 GCGACAAATGATTTGGTAGACGA 59.630 43.478 20.69 0.00 44.81 4.20
37 38 4.492570 GCGACAAATGATTTGGTAGACGAG 60.493 45.833 20.69 5.25 44.81 4.18
38 39 4.625742 CGACAAATGATTTGGTAGACGAGT 59.374 41.667 20.69 0.00 44.81 4.18
39 40 5.120208 CGACAAATGATTTGGTAGACGAGTT 59.880 40.000 20.69 0.00 44.81 3.01
40 41 6.481954 ACAAATGATTTGGTAGACGAGTTC 57.518 37.500 20.69 0.00 44.81 3.01
41 42 5.120208 ACAAATGATTTGGTAGACGAGTTCG 59.880 40.000 20.69 0.00 44.81 3.95
42 43 2.602878 TGATTTGGTAGACGAGTTCGC 58.397 47.619 0.73 0.00 44.43 4.70
43 44 2.230508 TGATTTGGTAGACGAGTTCGCT 59.769 45.455 0.73 2.99 44.43 4.93
44 45 3.441222 TGATTTGGTAGACGAGTTCGCTA 59.559 43.478 0.73 2.07 44.43 4.26
45 46 2.907910 TTGGTAGACGAGTTCGCTAC 57.092 50.000 18.86 18.86 44.43 3.58
46 47 1.812235 TGGTAGACGAGTTCGCTACA 58.188 50.000 23.81 14.52 43.67 2.74
47 48 2.153645 TGGTAGACGAGTTCGCTACAA 58.846 47.619 23.81 16.79 43.67 2.41
48 49 2.553602 TGGTAGACGAGTTCGCTACAAA 59.446 45.455 23.81 15.36 43.67 2.83
49 50 3.004629 TGGTAGACGAGTTCGCTACAAAA 59.995 43.478 23.81 13.86 43.67 2.44
50 51 3.607209 GGTAGACGAGTTCGCTACAAAAG 59.393 47.826 23.81 0.00 43.67 2.27
51 52 3.637998 AGACGAGTTCGCTACAAAAGA 57.362 42.857 0.73 0.00 44.43 2.52
52 53 3.566523 AGACGAGTTCGCTACAAAAGAG 58.433 45.455 0.73 0.00 44.43 2.85
53 54 3.004524 AGACGAGTTCGCTACAAAAGAGT 59.995 43.478 0.73 0.00 44.43 3.24
54 55 3.714391 ACGAGTTCGCTACAAAAGAGTT 58.286 40.909 0.73 0.00 44.43 3.01
55 56 4.863491 ACGAGTTCGCTACAAAAGAGTTA 58.137 39.130 0.73 0.00 44.43 2.24
56 57 4.678742 ACGAGTTCGCTACAAAAGAGTTAC 59.321 41.667 0.73 0.00 44.43 2.50
57 58 4.201372 CGAGTTCGCTACAAAAGAGTTACG 60.201 45.833 0.00 0.00 0.00 3.18
58 59 4.614946 AGTTCGCTACAAAAGAGTTACGT 58.385 39.130 0.00 0.00 0.00 3.57
59 60 4.678742 AGTTCGCTACAAAAGAGTTACGTC 59.321 41.667 0.00 0.00 0.00 4.34
60 61 4.494350 TCGCTACAAAAGAGTTACGTCT 57.506 40.909 0.00 0.00 0.00 4.18
61 62 4.224433 TCGCTACAAAAGAGTTACGTCTG 58.776 43.478 0.00 0.00 0.00 3.51
62 63 3.364023 CGCTACAAAAGAGTTACGTCTGG 59.636 47.826 0.00 0.00 0.00 3.86
63 64 4.304939 GCTACAAAAGAGTTACGTCTGGT 58.695 43.478 0.00 0.00 0.00 4.00
64 65 4.748600 GCTACAAAAGAGTTACGTCTGGTT 59.251 41.667 0.00 0.00 0.00 3.67
65 66 5.333111 GCTACAAAAGAGTTACGTCTGGTTG 60.333 44.000 0.00 0.00 32.40 3.77
66 67 3.875134 ACAAAAGAGTTACGTCTGGTTGG 59.125 43.478 0.00 0.00 31.24 3.77
67 68 4.124238 CAAAAGAGTTACGTCTGGTTGGA 58.876 43.478 0.00 0.00 0.00 3.53
68 69 3.662247 AAGAGTTACGTCTGGTTGGAG 57.338 47.619 0.00 0.00 0.00 3.86
69 70 1.893801 AGAGTTACGTCTGGTTGGAGG 59.106 52.381 0.00 0.00 0.00 4.30
70 71 0.974383 AGTTACGTCTGGTTGGAGGG 59.026 55.000 0.00 0.00 0.00 4.30
71 72 0.971386 GTTACGTCTGGTTGGAGGGA 59.029 55.000 0.00 0.00 0.00 4.20
72 73 0.971386 TTACGTCTGGTTGGAGGGAC 59.029 55.000 0.00 0.00 0.00 4.46
74 75 0.763223 ACGTCTGGTTGGAGGGACTT 60.763 55.000 0.00 0.00 41.55 3.01
75 76 0.320771 CGTCTGGTTGGAGGGACTTG 60.321 60.000 0.00 0.00 41.55 3.16
76 77 0.765510 GTCTGGTTGGAGGGACTTGT 59.234 55.000 0.00 0.00 41.55 3.16
77 78 0.764890 TCTGGTTGGAGGGACTTGTG 59.235 55.000 0.00 0.00 41.55 3.33
78 79 0.764890 CTGGTTGGAGGGACTTGTGA 59.235 55.000 0.00 0.00 41.55 3.58
79 80 1.352352 CTGGTTGGAGGGACTTGTGAT 59.648 52.381 0.00 0.00 41.55 3.06
80 81 1.780309 TGGTTGGAGGGACTTGTGATT 59.220 47.619 0.00 0.00 41.55 2.57
81 82 2.162681 GGTTGGAGGGACTTGTGATTG 58.837 52.381 0.00 0.00 41.55 2.67
82 83 2.224769 GGTTGGAGGGACTTGTGATTGA 60.225 50.000 0.00 0.00 41.55 2.57
83 84 3.486383 GTTGGAGGGACTTGTGATTGAA 58.514 45.455 0.00 0.00 41.55 2.69
84 85 3.140325 TGGAGGGACTTGTGATTGAAC 57.860 47.619 0.00 0.00 41.55 3.18
85 86 2.441375 TGGAGGGACTTGTGATTGAACA 59.559 45.455 0.00 0.00 41.55 3.18
86 87 2.814336 GGAGGGACTTGTGATTGAACAC 59.186 50.000 0.00 0.00 41.55 3.32
87 88 3.476552 GAGGGACTTGTGATTGAACACA 58.523 45.455 0.00 0.00 46.86 3.72
93 94 2.636647 TGTGATTGAACACAGGAGCA 57.363 45.000 0.00 0.00 44.29 4.26
94 95 2.497138 TGTGATTGAACACAGGAGCAG 58.503 47.619 0.00 0.00 44.29 4.24
95 96 2.104622 TGTGATTGAACACAGGAGCAGA 59.895 45.455 0.00 0.00 44.29 4.26
96 97 2.481952 GTGATTGAACACAGGAGCAGAC 59.518 50.000 0.00 0.00 40.11 3.51
97 98 1.728971 GATTGAACACAGGAGCAGACG 59.271 52.381 0.00 0.00 0.00 4.18
98 99 0.464036 TTGAACACAGGAGCAGACGT 59.536 50.000 0.00 0.00 0.00 4.34
99 100 0.032130 TGAACACAGGAGCAGACGTC 59.968 55.000 7.70 7.70 0.00 4.34
100 101 0.315568 GAACACAGGAGCAGACGTCT 59.684 55.000 13.58 13.58 0.00 4.18
101 102 0.315568 AACACAGGAGCAGACGTCTC 59.684 55.000 16.96 10.84 0.00 3.36
102 103 0.538516 ACACAGGAGCAGACGTCTCT 60.539 55.000 16.96 15.58 0.00 3.10
103 104 0.170116 CACAGGAGCAGACGTCTCTC 59.830 60.000 24.81 24.81 0.00 3.20
104 105 0.963355 ACAGGAGCAGACGTCTCTCC 60.963 60.000 33.91 33.91 45.11 3.71
105 106 0.962855 CAGGAGCAGACGTCTCTCCA 60.963 60.000 37.54 0.00 46.71 3.86
106 107 0.963355 AGGAGCAGACGTCTCTCCAC 60.963 60.000 37.54 24.83 46.71 4.02
107 108 1.509004 GAGCAGACGTCTCTCCACC 59.491 63.158 16.96 0.08 0.00 4.61
108 109 1.939769 GAGCAGACGTCTCTCCACCC 61.940 65.000 16.96 0.64 0.00 4.61
109 110 3.007973 GCAGACGTCTCTCCACCCC 62.008 68.421 16.96 0.00 0.00 4.95
110 111 1.606601 CAGACGTCTCTCCACCCCA 60.607 63.158 16.96 0.00 0.00 4.96
111 112 0.972983 CAGACGTCTCTCCACCCCAT 60.973 60.000 16.96 0.00 0.00 4.00
112 113 0.684805 AGACGTCTCTCCACCCCATC 60.685 60.000 13.58 0.00 0.00 3.51
113 114 1.677637 GACGTCTCTCCACCCCATCC 61.678 65.000 8.70 0.00 0.00 3.51
114 115 1.381872 CGTCTCTCCACCCCATCCT 60.382 63.158 0.00 0.00 0.00 3.24
115 116 1.395826 CGTCTCTCCACCCCATCCTC 61.396 65.000 0.00 0.00 0.00 3.71
116 117 1.051556 GTCTCTCCACCCCATCCTCC 61.052 65.000 0.00 0.00 0.00 4.30
117 118 2.041922 TCTCCACCCCATCCTCCG 60.042 66.667 0.00 0.00 0.00 4.63
118 119 2.365635 CTCCACCCCATCCTCCGT 60.366 66.667 0.00 0.00 0.00 4.69
119 120 1.075525 CTCCACCCCATCCTCCGTA 60.076 63.158 0.00 0.00 0.00 4.02
120 121 1.382146 TCCACCCCATCCTCCGTAC 60.382 63.158 0.00 0.00 0.00 3.67
121 122 2.440817 CCACCCCATCCTCCGTACC 61.441 68.421 0.00 0.00 0.00 3.34
122 123 1.382695 CACCCCATCCTCCGTACCT 60.383 63.158 0.00 0.00 0.00 3.08
123 124 0.981277 CACCCCATCCTCCGTACCTT 60.981 60.000 0.00 0.00 0.00 3.50
124 125 0.253020 ACCCCATCCTCCGTACCTTT 60.253 55.000 0.00 0.00 0.00 3.11
125 126 0.916809 CCCCATCCTCCGTACCTTTT 59.083 55.000 0.00 0.00 0.00 2.27
126 127 1.134189 CCCCATCCTCCGTACCTTTTC 60.134 57.143 0.00 0.00 0.00 2.29
127 128 1.838077 CCCATCCTCCGTACCTTTTCT 59.162 52.381 0.00 0.00 0.00 2.52
128 129 2.238898 CCCATCCTCCGTACCTTTTCTT 59.761 50.000 0.00 0.00 0.00 2.52
129 130 3.270877 CCATCCTCCGTACCTTTTCTTG 58.729 50.000 0.00 0.00 0.00 3.02
130 131 3.055385 CCATCCTCCGTACCTTTTCTTGA 60.055 47.826 0.00 0.00 0.00 3.02
131 132 3.672767 TCCTCCGTACCTTTTCTTGAC 57.327 47.619 0.00 0.00 0.00 3.18
132 133 3.236896 TCCTCCGTACCTTTTCTTGACT 58.763 45.455 0.00 0.00 0.00 3.41
133 134 3.644738 TCCTCCGTACCTTTTCTTGACTT 59.355 43.478 0.00 0.00 0.00 3.01
134 135 3.746492 CCTCCGTACCTTTTCTTGACTTG 59.254 47.826 0.00 0.00 0.00 3.16
135 136 4.377897 CTCCGTACCTTTTCTTGACTTGT 58.622 43.478 0.00 0.00 0.00 3.16
136 137 4.773013 TCCGTACCTTTTCTTGACTTGTT 58.227 39.130 0.00 0.00 0.00 2.83
137 138 5.187687 TCCGTACCTTTTCTTGACTTGTTT 58.812 37.500 0.00 0.00 0.00 2.83
138 139 5.648960 TCCGTACCTTTTCTTGACTTGTTTT 59.351 36.000 0.00 0.00 0.00 2.43
139 140 5.741982 CCGTACCTTTTCTTGACTTGTTTTG 59.258 40.000 0.00 0.00 0.00 2.44
140 141 6.319399 CGTACCTTTTCTTGACTTGTTTTGT 58.681 36.000 0.00 0.00 0.00 2.83
141 142 6.804783 CGTACCTTTTCTTGACTTGTTTTGTT 59.195 34.615 0.00 0.00 0.00 2.83
142 143 7.327518 CGTACCTTTTCTTGACTTGTTTTGTTT 59.672 33.333 0.00 0.00 0.00 2.83
143 144 8.984764 GTACCTTTTCTTGACTTGTTTTGTTTT 58.015 29.630 0.00 0.00 0.00 2.43
144 145 7.860613 ACCTTTTCTTGACTTGTTTTGTTTTG 58.139 30.769 0.00 0.00 0.00 2.44
145 146 7.497579 ACCTTTTCTTGACTTGTTTTGTTTTGT 59.502 29.630 0.00 0.00 0.00 2.83
146 147 8.341903 CCTTTTCTTGACTTGTTTTGTTTTGTT 58.658 29.630 0.00 0.00 0.00 2.83
147 148 9.715123 CTTTTCTTGACTTGTTTTGTTTTGTTT 57.285 25.926 0.00 0.00 0.00 2.83
186 187 8.936864 TCTATTTCTTTTCTTCGATGTCTTTCC 58.063 33.333 0.00 0.00 0.00 3.13
187 188 7.751768 ATTTCTTTTCTTCGATGTCTTTCCT 57.248 32.000 0.00 0.00 0.00 3.36
188 189 7.568199 TTTCTTTTCTTCGATGTCTTTCCTT 57.432 32.000 0.00 0.00 0.00 3.36
189 190 7.568199 TTCTTTTCTTCGATGTCTTTCCTTT 57.432 32.000 0.00 0.00 0.00 3.11
190 191 7.190920 TCTTTTCTTCGATGTCTTTCCTTTC 57.809 36.000 0.00 0.00 0.00 2.62
191 192 6.992715 TCTTTTCTTCGATGTCTTTCCTTTCT 59.007 34.615 0.00 0.00 0.00 2.52
192 193 7.499232 TCTTTTCTTCGATGTCTTTCCTTTCTT 59.501 33.333 0.00 0.00 0.00 2.52
193 194 8.671384 TTTTCTTCGATGTCTTTCCTTTCTTA 57.329 30.769 0.00 0.00 0.00 2.10
194 195 7.653767 TTCTTCGATGTCTTTCCTTTCTTAC 57.346 36.000 0.00 0.00 0.00 2.34
195 196 6.994221 TCTTCGATGTCTTTCCTTTCTTACT 58.006 36.000 0.00 0.00 0.00 2.24
196 197 7.442656 TCTTCGATGTCTTTCCTTTCTTACTT 58.557 34.615 0.00 0.00 0.00 2.24
197 198 7.931948 TCTTCGATGTCTTTCCTTTCTTACTTT 59.068 33.333 0.00 0.00 0.00 2.66
198 199 8.446599 TTCGATGTCTTTCCTTTCTTACTTTT 57.553 30.769 0.00 0.00 0.00 2.27
199 200 8.084590 TCGATGTCTTTCCTTTCTTACTTTTC 57.915 34.615 0.00 0.00 0.00 2.29
200 201 7.931948 TCGATGTCTTTCCTTTCTTACTTTTCT 59.068 33.333 0.00 0.00 0.00 2.52
201 202 8.560374 CGATGTCTTTCCTTTCTTACTTTTCTT 58.440 33.333 0.00 0.00 0.00 2.52
226 227 9.818796 TTTTTCTTTTATGTTTTCAAAGTGCAC 57.181 25.926 9.40 9.40 0.00 4.57
227 228 6.804534 TCTTTTATGTTTTCAAAGTGCACG 57.195 33.333 12.01 0.00 0.00 5.34
228 229 6.556212 TCTTTTATGTTTTCAAAGTGCACGA 58.444 32.000 12.01 0.00 0.00 4.35
229 230 7.030165 TCTTTTATGTTTTCAAAGTGCACGAA 58.970 30.769 12.01 6.37 0.00 3.85
230 231 7.704472 TCTTTTATGTTTTCAAAGTGCACGAAT 59.296 29.630 12.01 0.00 0.00 3.34
231 232 7.763172 TTTATGTTTTCAAAGTGCACGAATT 57.237 28.000 12.01 5.46 0.00 2.17
232 233 5.888412 ATGTTTTCAAAGTGCACGAATTC 57.112 34.783 12.01 0.00 0.00 2.17
233 234 4.992688 TGTTTTCAAAGTGCACGAATTCT 58.007 34.783 12.01 0.00 0.00 2.40
234 235 5.406649 TGTTTTCAAAGTGCACGAATTCTT 58.593 33.333 12.01 0.00 0.00 2.52
235 236 5.866633 TGTTTTCAAAGTGCACGAATTCTTT 59.133 32.000 12.01 2.21 0.00 2.52
236 237 6.034470 TGTTTTCAAAGTGCACGAATTCTTTC 59.966 34.615 12.01 0.52 0.00 2.62
237 238 4.891627 TCAAAGTGCACGAATTCTTTCA 57.108 36.364 12.01 0.00 0.00 2.69
238 239 5.242069 TCAAAGTGCACGAATTCTTTCAA 57.758 34.783 12.01 0.00 0.00 2.69
239 240 5.645624 TCAAAGTGCACGAATTCTTTCAAA 58.354 33.333 12.01 0.00 0.00 2.69
240 241 6.272318 TCAAAGTGCACGAATTCTTTCAAAT 58.728 32.000 12.01 0.00 0.00 2.32
241 242 6.756074 TCAAAGTGCACGAATTCTTTCAAATT 59.244 30.769 12.01 0.00 0.00 1.82
242 243 6.753897 AAGTGCACGAATTCTTTCAAATTC 57.246 33.333 12.01 0.00 40.63 2.17
334 335 9.872757 TGAACTTATTTGTTAAAGTCGATGAAC 57.127 29.630 0.00 0.00 34.91 3.18
349 350 8.452989 AGTCGATGAACTTTTATCAAATTTGC 57.547 30.769 13.54 0.00 0.00 3.68
350 351 7.271223 AGTCGATGAACTTTTATCAAATTTGCG 59.729 33.333 13.54 6.50 0.00 4.85
351 352 7.270365 GTCGATGAACTTTTATCAAATTTGCGA 59.730 33.333 13.54 8.63 0.00 5.10
352 353 7.481483 TCGATGAACTTTTATCAAATTTGCGAG 59.519 33.333 13.54 8.46 0.00 5.03
353 354 6.689178 TGAACTTTTATCAAATTTGCGAGC 57.311 33.333 13.54 0.00 0.00 5.03
354 355 6.212235 TGAACTTTTATCAAATTTGCGAGCA 58.788 32.000 13.54 0.00 0.00 4.26
355 356 6.867816 TGAACTTTTATCAAATTTGCGAGCAT 59.132 30.769 13.54 4.11 0.00 3.79
356 357 7.384660 TGAACTTTTATCAAATTTGCGAGCATT 59.615 29.630 13.54 2.69 0.00 3.56
357 358 7.656707 ACTTTTATCAAATTTGCGAGCATTT 57.343 28.000 13.54 0.00 0.00 2.32
358 359 8.086851 ACTTTTATCAAATTTGCGAGCATTTT 57.913 26.923 13.54 0.00 0.00 1.82
359 360 8.223100 ACTTTTATCAAATTTGCGAGCATTTTC 58.777 29.630 13.54 0.00 0.00 2.29
360 361 7.887996 TTTATCAAATTTGCGAGCATTTTCT 57.112 28.000 13.54 0.00 0.00 2.52
361 362 8.978564 TTTATCAAATTTGCGAGCATTTTCTA 57.021 26.923 13.54 0.00 0.00 2.10
362 363 8.978564 TTATCAAATTTGCGAGCATTTTCTAA 57.021 26.923 13.54 1.60 0.00 2.10
363 364 7.887996 ATCAAATTTGCGAGCATTTTCTAAA 57.112 28.000 13.54 0.00 0.00 1.85
364 365 7.706281 TCAAATTTGCGAGCATTTTCTAAAA 57.294 28.000 13.54 0.00 0.00 1.52
365 366 8.309163 TCAAATTTGCGAGCATTTTCTAAAAT 57.691 26.923 13.54 0.00 39.07 1.82
366 367 8.772705 TCAAATTTGCGAGCATTTTCTAAAATT 58.227 25.926 13.54 0.00 36.52 1.82
367 368 8.833264 CAAATTTGCGAGCATTTTCTAAAATTG 58.167 29.630 5.01 0.00 36.52 2.32
368 369 7.887996 ATTTGCGAGCATTTTCTAAAATTGA 57.112 28.000 0.00 0.00 36.52 2.57
369 370 7.887996 TTTGCGAGCATTTTCTAAAATTGAT 57.112 28.000 0.00 0.00 36.52 2.57
370 371 6.874297 TGCGAGCATTTTCTAAAATTGATG 57.126 33.333 0.00 0.00 36.52 3.07
371 372 6.619744 TGCGAGCATTTTCTAAAATTGATGA 58.380 32.000 0.00 0.00 36.52 2.92
372 373 7.089538 TGCGAGCATTTTCTAAAATTGATGAA 58.910 30.769 0.00 0.00 36.52 2.57
373 374 7.062138 TGCGAGCATTTTCTAAAATTGATGAAC 59.938 33.333 0.00 0.00 36.52 3.18
374 375 7.274250 GCGAGCATTTTCTAAAATTGATGAACT 59.726 33.333 0.00 0.00 36.52 3.01
375 376 9.132521 CGAGCATTTTCTAAAATTGATGAACTT 57.867 29.630 0.00 0.00 36.52 2.66
377 378 9.985730 AGCATTTTCTAAAATTGATGAACTTGA 57.014 25.926 0.00 0.00 36.52 3.02
387 388 9.688592 AAAATTGATGAACTTGATGAACTTCTC 57.311 29.630 0.00 0.00 0.00 2.87
388 389 8.632906 AATTGATGAACTTGATGAACTTCTCT 57.367 30.769 0.00 0.00 0.00 3.10
389 390 7.664082 TTGATGAACTTGATGAACTTCTCTC 57.336 36.000 0.00 0.00 0.00 3.20
390 391 6.762333 TGATGAACTTGATGAACTTCTCTCA 58.238 36.000 0.00 0.00 0.00 3.27
391 392 7.219322 TGATGAACTTGATGAACTTCTCTCAA 58.781 34.615 6.98 6.98 0.00 3.02
392 393 6.851222 TGAACTTGATGAACTTCTCTCAAC 57.149 37.500 4.27 0.00 0.00 3.18
393 394 6.348498 TGAACTTGATGAACTTCTCTCAACA 58.652 36.000 4.27 0.00 0.00 3.33
394 395 6.823182 TGAACTTGATGAACTTCTCTCAACAA 59.177 34.615 4.27 0.00 35.22 2.83
398 399 7.664082 TTGATGAACTTCTCTCAACAAGATC 57.336 36.000 4.27 0.00 32.57 2.75
399 400 6.762333 TGATGAACTTCTCTCAACAAGATCA 58.238 36.000 0.00 0.00 36.29 2.92
400 401 7.219322 TGATGAACTTCTCTCAACAAGATCAA 58.781 34.615 0.00 0.00 35.70 2.57
401 402 7.716560 TGATGAACTTCTCTCAACAAGATCAAA 59.283 33.333 0.00 0.00 35.70 2.69
402 403 7.864108 TGAACTTCTCTCAACAAGATCAAAA 57.136 32.000 0.00 0.00 30.83 2.44
403 404 7.697691 TGAACTTCTCTCAACAAGATCAAAAC 58.302 34.615 0.00 0.00 30.83 2.43
404 405 7.554118 TGAACTTCTCTCAACAAGATCAAAACT 59.446 33.333 0.00 0.00 30.83 2.66
405 406 7.872113 ACTTCTCTCAACAAGATCAAAACTT 57.128 32.000 0.00 0.00 32.19 2.66
406 407 8.286191 ACTTCTCTCAACAAGATCAAAACTTT 57.714 30.769 0.00 0.00 32.19 2.66
407 408 8.743714 ACTTCTCTCAACAAGATCAAAACTTTT 58.256 29.630 0.00 0.00 32.19 2.27
408 409 9.578439 CTTCTCTCAACAAGATCAAAACTTTTT 57.422 29.630 0.00 0.00 32.19 1.94
510 511 9.511144 TCTTTCAAATTCGTAAAGACTTTTTCC 57.489 29.630 5.61 0.00 35.02 3.13
511 512 9.296400 CTTTCAAATTCGTAAAGACTTTTTCCA 57.704 29.630 5.61 0.00 33.05 3.53
512 513 9.640963 TTTCAAATTCGTAAAGACTTTTTCCAA 57.359 25.926 5.61 0.00 30.57 3.53
513 514 9.640963 TTCAAATTCGTAAAGACTTTTTCCAAA 57.359 25.926 5.61 0.00 30.57 3.28
514 515 9.078753 TCAAATTCGTAAAGACTTTTTCCAAAC 57.921 29.630 5.61 0.00 30.57 2.93
515 516 9.083080 CAAATTCGTAAAGACTTTTTCCAAACT 57.917 29.630 5.61 0.00 30.57 2.66
516 517 8.851960 AATTCGTAAAGACTTTTTCCAAACTC 57.148 30.769 5.61 0.00 0.00 3.01
517 518 6.988622 TCGTAAAGACTTTTTCCAAACTCA 57.011 33.333 5.61 0.00 0.00 3.41
518 519 7.562454 TCGTAAAGACTTTTTCCAAACTCAT 57.438 32.000 5.61 0.00 0.00 2.90
519 520 7.414436 TCGTAAAGACTTTTTCCAAACTCATG 58.586 34.615 5.61 0.00 0.00 3.07
520 521 7.281324 TCGTAAAGACTTTTTCCAAACTCATGA 59.719 33.333 5.61 0.00 0.00 3.07
521 522 7.913297 CGTAAAGACTTTTTCCAAACTCATGAA 59.087 33.333 5.61 0.00 0.00 2.57
522 523 9.020813 GTAAAGACTTTTTCCAAACTCATGAAC 57.979 33.333 5.61 0.00 0.00 3.18
523 524 7.410120 AAGACTTTTTCCAAACTCATGAACT 57.590 32.000 0.00 0.00 0.00 3.01
524 525 7.410120 AGACTTTTTCCAAACTCATGAACTT 57.590 32.000 0.00 0.00 0.00 2.66
525 526 7.840931 AGACTTTTTCCAAACTCATGAACTTT 58.159 30.769 0.00 0.00 0.00 2.66
526 527 8.314021 AGACTTTTTCCAAACTCATGAACTTTT 58.686 29.630 0.00 0.00 0.00 2.27
527 528 8.846943 ACTTTTTCCAAACTCATGAACTTTTT 57.153 26.923 0.00 0.00 0.00 1.94
572 573 8.918961 AAACGTATGTTCAATTTTTGAGTTCA 57.081 26.923 0.00 0.00 41.38 3.18
573 574 8.918961 AACGTATGTTCAATTTTTGAGTTCAA 57.081 26.923 0.00 0.00 41.38 2.69
574 575 8.560576 ACGTATGTTCAATTTTTGAGTTCAAG 57.439 30.769 0.00 0.00 41.38 3.02
575 576 8.402472 ACGTATGTTCAATTTTTGAGTTCAAGA 58.598 29.630 0.00 0.00 41.38 3.02
576 577 9.398170 CGTATGTTCAATTTTTGAGTTCAAGAT 57.602 29.630 0.00 0.00 41.38 2.40
578 579 8.822652 ATGTTCAATTTTTGAGTTCAAGATCC 57.177 30.769 0.00 0.00 41.38 3.36
579 580 7.209475 TGTTCAATTTTTGAGTTCAAGATCCC 58.791 34.615 0.00 0.00 41.38 3.85
580 581 6.012658 TCAATTTTTGAGTTCAAGATCCCG 57.987 37.500 0.00 0.00 37.15 5.14
581 582 5.534654 TCAATTTTTGAGTTCAAGATCCCGT 59.465 36.000 0.00 0.00 37.15 5.28
582 583 6.040391 TCAATTTTTGAGTTCAAGATCCCGTT 59.960 34.615 0.00 0.00 37.15 4.44
583 584 4.829064 TTTTGAGTTCAAGATCCCGTTG 57.171 40.909 0.00 0.00 37.15 4.10
584 585 3.762407 TTGAGTTCAAGATCCCGTTGA 57.238 42.857 0.00 0.00 31.98 3.18
585 586 3.762407 TGAGTTCAAGATCCCGTTGAA 57.238 42.857 4.88 4.88 40.73 2.69
586 587 3.664107 TGAGTTCAAGATCCCGTTGAAG 58.336 45.455 8.44 0.00 42.99 3.02
587 588 3.003480 GAGTTCAAGATCCCGTTGAAGG 58.997 50.000 8.44 0.00 42.99 3.46
588 589 1.468914 GTTCAAGATCCCGTTGAAGGC 59.531 52.381 8.44 0.00 42.99 4.35
589 590 0.391130 TCAAGATCCCGTTGAAGGCG 60.391 55.000 0.00 0.00 30.89 5.52
590 591 1.745489 AAGATCCCGTTGAAGGCGC 60.745 57.895 0.00 0.00 0.00 6.53
591 592 3.564027 GATCCCGTTGAAGGCGCG 61.564 66.667 0.00 0.00 0.00 6.86
625 627 1.079503 GTGTTCCCGTTGATCTGAGC 58.920 55.000 0.00 0.00 0.00 4.26
629 631 3.007506 TGTTCCCGTTGATCTGAGCTAAA 59.992 43.478 0.00 0.00 0.00 1.85
632 634 4.843728 TCCCGTTGATCTGAGCTAAAAAT 58.156 39.130 0.00 0.00 0.00 1.82
633 635 4.635765 TCCCGTTGATCTGAGCTAAAAATG 59.364 41.667 0.00 0.00 0.00 2.32
634 636 4.635765 CCCGTTGATCTGAGCTAAAAATGA 59.364 41.667 0.00 0.00 0.00 2.57
636 638 6.253746 CCGTTGATCTGAGCTAAAAATGAAG 58.746 40.000 0.00 0.00 0.00 3.02
637 639 6.128172 CCGTTGATCTGAGCTAAAAATGAAGT 60.128 38.462 0.00 0.00 0.00 3.01
638 640 7.064609 CCGTTGATCTGAGCTAAAAATGAAGTA 59.935 37.037 0.00 0.00 0.00 2.24
683 686 1.531423 GCATGGACTAGCCCATCATG 58.469 55.000 7.74 0.00 44.69 3.07
684 687 1.885359 GCATGGACTAGCCCATCATGG 60.885 57.143 7.74 0.00 44.69 3.66
696 699 1.487976 CCATCATGGTACCTGCAGACT 59.512 52.381 17.39 1.71 31.35 3.24
737 740 2.098233 CGGGACCGTTCAACCATCG 61.098 63.158 1.86 0.00 34.35 3.84
900 903 1.358725 CCTCCACGTAACACCATGCG 61.359 60.000 0.00 0.00 34.42 4.73
1026 1033 1.843376 CCACCACAGAGACAGGGGT 60.843 63.158 0.00 0.00 0.00 4.95
1179 1186 2.501128 GGGTCGATGCTGCTGCTA 59.499 61.111 17.00 3.79 40.48 3.49
1486 1493 2.273449 CGCAGGGGGCTTGAAGAT 59.727 61.111 0.00 0.00 41.67 2.40
1492 1499 0.394899 GGGGGCTTGAAGATGAGGTG 60.395 60.000 0.00 0.00 0.00 4.00
1543 1553 4.377738 GGTGATGAACGATATAGCGTACGA 60.378 45.833 21.65 4.03 44.86 3.43
1655 1666 4.155280 AGTGCGTGTTTAGACTTTTGTTGT 59.845 37.500 0.00 0.00 0.00 3.32
1667 1678 7.448748 AGACTTTTGTTGTGAACTAGTTGTT 57.551 32.000 14.14 0.00 42.38 2.83
1758 1772 1.532868 GTGTGTGCTTGTGGATGTCTC 59.467 52.381 0.00 0.00 0.00 3.36
1759 1773 1.417517 TGTGTGCTTGTGGATGTCTCT 59.582 47.619 0.00 0.00 0.00 3.10
1760 1774 1.802960 GTGTGCTTGTGGATGTCTCTG 59.197 52.381 0.00 0.00 0.00 3.35
1861 1883 2.999355 CAACTTGCAGAAGAGACTAGGC 59.001 50.000 0.00 0.00 32.98 3.93
1862 1884 2.534990 ACTTGCAGAAGAGACTAGGCT 58.465 47.619 0.00 0.00 32.98 4.58
1874 1896 5.301555 AGAGACTAGGCTCTTGTGTTTTTC 58.698 41.667 23.23 0.00 42.41 2.29
1875 1897 4.390264 AGACTAGGCTCTTGTGTTTTTCC 58.610 43.478 0.00 0.00 0.00 3.13
1877 1899 3.883489 ACTAGGCTCTTGTGTTTTTCCAC 59.117 43.478 0.00 0.00 35.86 4.02
1879 1901 3.299503 AGGCTCTTGTGTTTTTCCACAT 58.700 40.909 0.00 0.00 44.32 3.21
1881 1903 4.278419 AGGCTCTTGTGTTTTTCCACATAC 59.722 41.667 0.00 0.00 44.32 2.39
1887 1909 3.810941 TGTGTTTTTCCACATACGACTCC 59.189 43.478 0.00 0.00 40.30 3.85
1888 1910 3.810941 GTGTTTTTCCACATACGACTCCA 59.189 43.478 0.00 0.00 35.38 3.86
1889 1911 4.273969 GTGTTTTTCCACATACGACTCCAA 59.726 41.667 0.00 0.00 35.38 3.53
1890 1912 4.882427 TGTTTTTCCACATACGACTCCAAA 59.118 37.500 0.00 0.00 0.00 3.28
1891 1913 5.357314 TGTTTTTCCACATACGACTCCAAAA 59.643 36.000 0.00 0.00 0.00 2.44
1892 1914 6.039941 TGTTTTTCCACATACGACTCCAAAAT 59.960 34.615 0.00 0.00 0.00 1.82
1893 1915 5.873179 TTTCCACATACGACTCCAAAATC 57.127 39.130 0.00 0.00 0.00 2.17
1894 1916 4.545208 TCCACATACGACTCCAAAATCA 57.455 40.909 0.00 0.00 0.00 2.57
1895 1917 4.900684 TCCACATACGACTCCAAAATCAA 58.099 39.130 0.00 0.00 0.00 2.57
1896 1918 4.693566 TCCACATACGACTCCAAAATCAAC 59.306 41.667 0.00 0.00 0.00 3.18
1897 1919 4.142687 CCACATACGACTCCAAAATCAACC 60.143 45.833 0.00 0.00 0.00 3.77
1898 1920 4.695455 CACATACGACTCCAAAATCAACCT 59.305 41.667 0.00 0.00 0.00 3.50
1899 1921 5.872617 CACATACGACTCCAAAATCAACCTA 59.127 40.000 0.00 0.00 0.00 3.08
1900 1922 6.370442 CACATACGACTCCAAAATCAACCTAA 59.630 38.462 0.00 0.00 0.00 2.69
1901 1923 7.065803 CACATACGACTCCAAAATCAACCTAAT 59.934 37.037 0.00 0.00 0.00 1.73
1902 1924 8.262227 ACATACGACTCCAAAATCAACCTAATA 58.738 33.333 0.00 0.00 0.00 0.98
1903 1925 6.980051 ACGACTCCAAAATCAACCTAATAC 57.020 37.500 0.00 0.00 0.00 1.89
1904 1926 5.878669 ACGACTCCAAAATCAACCTAATACC 59.121 40.000 0.00 0.00 0.00 2.73
1905 1927 5.878116 CGACTCCAAAATCAACCTAATACCA 59.122 40.000 0.00 0.00 0.00 3.25
1906 1928 6.373216 CGACTCCAAAATCAACCTAATACCAA 59.627 38.462 0.00 0.00 0.00 3.67
1907 1929 7.462571 ACTCCAAAATCAACCTAATACCAAC 57.537 36.000 0.00 0.00 0.00 3.77
1908 1930 7.238710 ACTCCAAAATCAACCTAATACCAACT 58.761 34.615 0.00 0.00 0.00 3.16
1909 1931 7.728532 ACTCCAAAATCAACCTAATACCAACTT 59.271 33.333 0.00 0.00 0.00 2.66
1910 1932 9.238368 CTCCAAAATCAACCTAATACCAACTTA 57.762 33.333 0.00 0.00 0.00 2.24
1911 1933 9.016438 TCCAAAATCAACCTAATACCAACTTAC 57.984 33.333 0.00 0.00 0.00 2.34
1912 1934 8.248253 CCAAAATCAACCTAATACCAACTTACC 58.752 37.037 0.00 0.00 0.00 2.85
1913 1935 8.798402 CAAAATCAACCTAATACCAACTTACCA 58.202 33.333 0.00 0.00 0.00 3.25
1914 1936 8.943594 AAATCAACCTAATACCAACTTACCAA 57.056 30.769 0.00 0.00 0.00 3.67
1915 1937 8.943594 AATCAACCTAATACCAACTTACCAAA 57.056 30.769 0.00 0.00 0.00 3.28
1916 1938 9.541884 AATCAACCTAATACCAACTTACCAAAT 57.458 29.630 0.00 0.00 0.00 2.32
1917 1939 8.343168 TCAACCTAATACCAACTTACCAAATG 57.657 34.615 0.00 0.00 0.00 2.32
1918 1940 8.164733 TCAACCTAATACCAACTTACCAAATGA 58.835 33.333 0.00 0.00 0.00 2.57
1919 1941 7.933215 ACCTAATACCAACTTACCAAATGAC 57.067 36.000 0.00 0.00 0.00 3.06
1920 1942 7.696017 ACCTAATACCAACTTACCAAATGACT 58.304 34.615 0.00 0.00 0.00 3.41
1921 1943 8.828751 ACCTAATACCAACTTACCAAATGACTA 58.171 33.333 0.00 0.00 0.00 2.59
1922 1944 9.847224 CCTAATACCAACTTACCAAATGACTAT 57.153 33.333 0.00 0.00 0.00 2.12
1924 1946 8.519799 AATACCAACTTACCAAATGACTATGG 57.480 34.615 0.00 0.00 42.60 2.74
1936 1958 8.539770 CCAAATGACTATGGTACTAGCATTAG 57.460 38.462 6.08 5.11 37.51 1.73
1957 1979 5.438761 AGCTCTTGTGTTTTTCCACATAC 57.561 39.130 0.00 0.00 44.32 2.39
1958 1980 4.024048 AGCTCTTGTGTTTTTCCACATACG 60.024 41.667 0.00 0.00 44.32 3.06
1959 1981 4.024387 GCTCTTGTGTTTTTCCACATACGA 60.024 41.667 0.00 0.00 44.32 3.43
1960 1982 5.412526 TCTTGTGTTTTTCCACATACGAC 57.587 39.130 0.00 0.00 44.32 4.34
1961 1983 5.120399 TCTTGTGTTTTTCCACATACGACT 58.880 37.500 0.00 0.00 44.32 4.18
1963 1985 3.810941 TGTGTTTTTCCACATACGACTCC 59.189 43.478 0.00 0.00 40.30 3.85
1969 1991 5.873179 TTTCCACATACGACTCCAAAATC 57.127 39.130 0.00 0.00 0.00 2.17
1972 1994 4.693566 TCCACATACGACTCCAAAATCAAC 59.306 41.667 0.00 0.00 0.00 3.18
1973 1995 4.142687 CCACATACGACTCCAAAATCAACC 60.143 45.833 0.00 0.00 0.00 3.77
1991 2019 8.943594 AATCAACCTAATACCAACTTACCAAA 57.056 30.769 0.00 0.00 0.00 3.28
2082 2111 6.615316 TCTCCTGGAGATGGACAATAATGTAA 59.385 38.462 22.30 0.00 35.17 2.41
2113 2144 6.572254 CGTAGTGTTTATGAAACGTTTGAAGG 59.428 38.462 20.10 0.00 44.28 3.46
2168 2201 3.765381 TCCATGAAGGAAATGCTTGTCA 58.235 40.909 0.00 0.00 45.65 3.58
2176 2209 4.886579 AGGAAATGCTTGTCAATGTTTCC 58.113 39.130 19.13 19.13 39.75 3.13
2177 2210 4.590222 AGGAAATGCTTGTCAATGTTTCCT 59.410 37.500 21.55 21.55 42.52 3.36
2178 2211 4.687483 GGAAATGCTTGTCAATGTTTCCTG 59.313 41.667 19.32 0.00 37.91 3.86
2204 2237 4.037565 AGTTGTATCGCATTCGGAGTGATA 59.962 41.667 4.52 1.00 37.41 2.15
2216 2249 2.418746 CGGAGTGATACTGTTTCAGGGG 60.419 54.545 1.02 0.00 35.51 4.79
2224 2257 2.338809 ACTGTTTCAGGGGATGACTGA 58.661 47.619 1.90 0.00 42.81 3.41
2232 2265 6.581388 TTCAGGGGATGACTGAATATTCTT 57.419 37.500 16.24 3.63 46.70 2.52
2258 2291 5.813157 TGTTCTGTTCTGTTGTGATTTACGA 59.187 36.000 0.00 0.00 0.00 3.43
2297 2330 6.388100 AGATGGGGAGATTGTTCAAAGATCTA 59.612 38.462 0.00 0.00 30.64 1.98
2419 2520 2.630098 ACTCTGCTGCTCTGTTCTGTTA 59.370 45.455 0.00 0.00 0.00 2.41
2420 2521 2.992543 CTCTGCTGCTCTGTTCTGTTAC 59.007 50.000 0.00 0.00 0.00 2.50
2422 2523 1.068588 TGCTGCTCTGTTCTGTTACGT 59.931 47.619 0.00 0.00 0.00 3.57
2423 2524 2.295070 TGCTGCTCTGTTCTGTTACGTA 59.705 45.455 0.00 0.00 0.00 3.57
2424 2525 2.662156 GCTGCTCTGTTCTGTTACGTAC 59.338 50.000 0.00 0.00 0.00 3.67
2425 2526 3.855895 GCTGCTCTGTTCTGTTACGTACA 60.856 47.826 0.00 0.00 34.95 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.872603 TCGCCAAGCACCACTGGT 61.873 61.111 0.00 0.00 35.62 4.00
1 2 3.357079 GTCGCCAAGCACCACTGG 61.357 66.667 0.00 0.00 0.00 4.00
2 3 1.723608 TTTGTCGCCAAGCACCACTG 61.724 55.000 0.00 0.00 0.00 3.66
3 4 0.823356 ATTTGTCGCCAAGCACCACT 60.823 50.000 0.00 0.00 0.00 4.00
4 5 0.664166 CATTTGTCGCCAAGCACCAC 60.664 55.000 0.00 0.00 0.00 4.16
5 6 0.821301 TCATTTGTCGCCAAGCACCA 60.821 50.000 0.00 0.00 0.00 4.17
6 7 0.527565 ATCATTTGTCGCCAAGCACC 59.472 50.000 0.00 0.00 0.00 5.01
7 8 2.352503 AATCATTTGTCGCCAAGCAC 57.647 45.000 0.00 0.00 0.00 4.40
8 9 2.609984 CCAAATCATTTGTCGCCAAGCA 60.610 45.455 9.31 0.00 38.98 3.91
10 11 3.302365 ACCAAATCATTTGTCGCCAAG 57.698 42.857 9.31 0.00 38.98 3.61
11 12 4.075682 TCTACCAAATCATTTGTCGCCAA 58.924 39.130 9.31 0.00 38.98 4.52
13 14 3.485216 CGTCTACCAAATCATTTGTCGCC 60.485 47.826 9.31 0.00 38.98 5.54
14 15 3.369756 TCGTCTACCAAATCATTTGTCGC 59.630 43.478 9.31 0.00 38.98 5.19
15 16 4.625742 ACTCGTCTACCAAATCATTTGTCG 59.374 41.667 9.31 6.10 38.98 4.35
17 18 5.120208 CGAACTCGTCTACCAAATCATTTGT 59.880 40.000 9.31 0.63 35.31 2.83
18 19 5.550981 CGAACTCGTCTACCAAATCATTTG 58.449 41.667 2.80 2.80 36.13 2.32
19 20 4.092968 GCGAACTCGTCTACCAAATCATTT 59.907 41.667 0.51 0.00 42.22 2.32
20 21 3.617263 GCGAACTCGTCTACCAAATCATT 59.383 43.478 0.51 0.00 42.22 2.57
21 22 3.119101 AGCGAACTCGTCTACCAAATCAT 60.119 43.478 0.51 0.00 42.22 2.45
22 23 2.230508 AGCGAACTCGTCTACCAAATCA 59.769 45.455 0.51 0.00 42.22 2.57
23 24 2.877335 AGCGAACTCGTCTACCAAATC 58.123 47.619 0.51 0.00 42.22 2.17
24 25 3.192001 TGTAGCGAACTCGTCTACCAAAT 59.808 43.478 20.62 0.00 42.52 2.32
25 26 2.553602 TGTAGCGAACTCGTCTACCAAA 59.446 45.455 20.62 8.47 42.52 3.28
26 27 2.153645 TGTAGCGAACTCGTCTACCAA 58.846 47.619 20.62 8.93 42.52 3.67
27 28 1.812235 TGTAGCGAACTCGTCTACCA 58.188 50.000 20.62 12.12 42.52 3.25
28 29 2.907910 TTGTAGCGAACTCGTCTACC 57.092 50.000 20.62 10.60 42.52 3.18
29 30 4.470462 TCTTTTGTAGCGAACTCGTCTAC 58.530 43.478 18.49 18.49 42.98 2.59
30 31 4.214971 ACTCTTTTGTAGCGAACTCGTCTA 59.785 41.667 0.51 0.80 42.22 2.59
31 32 3.004524 ACTCTTTTGTAGCGAACTCGTCT 59.995 43.478 0.51 1.70 42.22 4.18
32 33 3.306818 ACTCTTTTGTAGCGAACTCGTC 58.693 45.455 0.51 0.00 42.22 4.20
33 34 3.366440 ACTCTTTTGTAGCGAACTCGT 57.634 42.857 0.51 0.00 42.22 4.18
34 35 4.201372 CGTAACTCTTTTGTAGCGAACTCG 60.201 45.833 0.00 0.00 43.27 4.18
35 36 4.678742 ACGTAACTCTTTTGTAGCGAACTC 59.321 41.667 0.00 0.00 0.00 3.01
36 37 4.614946 ACGTAACTCTTTTGTAGCGAACT 58.385 39.130 0.00 0.00 0.00 3.01
37 38 4.678742 AGACGTAACTCTTTTGTAGCGAAC 59.321 41.667 0.00 0.00 0.00 3.95
38 39 4.678287 CAGACGTAACTCTTTTGTAGCGAA 59.322 41.667 0.00 0.00 0.00 4.70
39 40 4.224433 CAGACGTAACTCTTTTGTAGCGA 58.776 43.478 0.00 0.00 0.00 4.93
40 41 3.364023 CCAGACGTAACTCTTTTGTAGCG 59.636 47.826 0.00 0.00 0.00 4.26
41 42 4.304939 ACCAGACGTAACTCTTTTGTAGC 58.695 43.478 0.00 0.00 0.00 3.58
42 43 5.176958 CCAACCAGACGTAACTCTTTTGTAG 59.823 44.000 0.00 0.00 0.00 2.74
43 44 5.051816 CCAACCAGACGTAACTCTTTTGTA 58.948 41.667 0.00 0.00 0.00 2.41
44 45 3.875134 CCAACCAGACGTAACTCTTTTGT 59.125 43.478 0.00 0.00 0.00 2.83
45 46 4.124238 TCCAACCAGACGTAACTCTTTTG 58.876 43.478 0.00 0.00 0.00 2.44
46 47 4.377897 CTCCAACCAGACGTAACTCTTTT 58.622 43.478 0.00 0.00 0.00 2.27
47 48 3.244112 CCTCCAACCAGACGTAACTCTTT 60.244 47.826 0.00 0.00 0.00 2.52
48 49 2.299297 CCTCCAACCAGACGTAACTCTT 59.701 50.000 0.00 0.00 0.00 2.85
49 50 1.893801 CCTCCAACCAGACGTAACTCT 59.106 52.381 0.00 0.00 0.00 3.24
50 51 1.067071 CCCTCCAACCAGACGTAACTC 60.067 57.143 0.00 0.00 0.00 3.01
51 52 0.974383 CCCTCCAACCAGACGTAACT 59.026 55.000 0.00 0.00 0.00 2.24
52 53 0.971386 TCCCTCCAACCAGACGTAAC 59.029 55.000 0.00 0.00 0.00 2.50
53 54 0.971386 GTCCCTCCAACCAGACGTAA 59.029 55.000 0.00 0.00 0.00 3.18
54 55 0.113776 AGTCCCTCCAACCAGACGTA 59.886 55.000 0.00 0.00 34.41 3.57
55 56 0.763223 AAGTCCCTCCAACCAGACGT 60.763 55.000 0.00 0.00 34.41 4.34
56 57 0.320771 CAAGTCCCTCCAACCAGACG 60.321 60.000 0.00 0.00 34.41 4.18
57 58 0.765510 ACAAGTCCCTCCAACCAGAC 59.234 55.000 0.00 0.00 0.00 3.51
58 59 0.764890 CACAAGTCCCTCCAACCAGA 59.235 55.000 0.00 0.00 0.00 3.86
59 60 0.764890 TCACAAGTCCCTCCAACCAG 59.235 55.000 0.00 0.00 0.00 4.00
60 61 1.444933 ATCACAAGTCCCTCCAACCA 58.555 50.000 0.00 0.00 0.00 3.67
61 62 2.162681 CAATCACAAGTCCCTCCAACC 58.837 52.381 0.00 0.00 0.00 3.77
62 63 3.140325 TCAATCACAAGTCCCTCCAAC 57.860 47.619 0.00 0.00 0.00 3.77
63 64 3.117701 TGTTCAATCACAAGTCCCTCCAA 60.118 43.478 0.00 0.00 0.00 3.53
64 65 2.441375 TGTTCAATCACAAGTCCCTCCA 59.559 45.455 0.00 0.00 0.00 3.86
65 66 2.814336 GTGTTCAATCACAAGTCCCTCC 59.186 50.000 0.00 0.00 38.12 4.30
66 67 3.476552 TGTGTTCAATCACAAGTCCCTC 58.523 45.455 0.00 0.00 43.92 4.30
67 68 3.480470 CTGTGTTCAATCACAAGTCCCT 58.520 45.455 1.41 0.00 45.70 4.20
68 69 2.554032 CCTGTGTTCAATCACAAGTCCC 59.446 50.000 1.41 0.00 45.70 4.46
69 70 3.476552 TCCTGTGTTCAATCACAAGTCC 58.523 45.455 1.41 0.00 45.70 3.85
70 71 3.058639 GCTCCTGTGTTCAATCACAAGTC 60.059 47.826 1.41 0.00 45.70 3.01
71 72 2.880890 GCTCCTGTGTTCAATCACAAGT 59.119 45.455 1.41 0.00 45.70 3.16
72 73 2.880268 TGCTCCTGTGTTCAATCACAAG 59.120 45.455 1.41 0.00 45.70 3.16
73 74 2.880268 CTGCTCCTGTGTTCAATCACAA 59.120 45.455 1.41 0.00 45.70 3.33
74 75 2.104622 TCTGCTCCTGTGTTCAATCACA 59.895 45.455 0.00 0.00 44.54 3.58
75 76 2.481952 GTCTGCTCCTGTGTTCAATCAC 59.518 50.000 0.00 0.00 38.63 3.06
76 77 2.771089 GTCTGCTCCTGTGTTCAATCA 58.229 47.619 0.00 0.00 0.00 2.57
77 78 1.728971 CGTCTGCTCCTGTGTTCAATC 59.271 52.381 0.00 0.00 0.00 2.67
78 79 1.070758 ACGTCTGCTCCTGTGTTCAAT 59.929 47.619 0.00 0.00 0.00 2.57
79 80 0.464036 ACGTCTGCTCCTGTGTTCAA 59.536 50.000 0.00 0.00 0.00 2.69
80 81 0.032130 GACGTCTGCTCCTGTGTTCA 59.968 55.000 8.70 0.00 0.00 3.18
81 82 0.315568 AGACGTCTGCTCCTGTGTTC 59.684 55.000 19.30 0.00 0.00 3.18
82 83 0.315568 GAGACGTCTGCTCCTGTGTT 59.684 55.000 25.58 0.00 0.00 3.32
83 84 0.538516 AGAGACGTCTGCTCCTGTGT 60.539 55.000 25.58 0.00 32.82 3.72
84 85 0.170116 GAGAGACGTCTGCTCCTGTG 59.830 60.000 25.58 0.00 30.97 3.66
85 86 0.963355 GGAGAGACGTCTGCTCCTGT 60.963 60.000 33.75 11.70 43.79 4.00
86 87 0.962855 TGGAGAGACGTCTGCTCCTG 60.963 60.000 36.61 0.00 46.56 3.86
87 88 0.963355 GTGGAGAGACGTCTGCTCCT 60.963 60.000 36.61 25.43 46.56 3.69
88 89 1.509004 GTGGAGAGACGTCTGCTCC 59.491 63.158 34.06 34.06 46.60 4.70
89 90 1.509004 GGTGGAGAGACGTCTGCTC 59.491 63.158 25.58 25.07 41.64 4.26
90 91 1.979693 GGGTGGAGAGACGTCTGCT 60.980 63.158 25.58 19.01 41.64 4.24
91 92 2.574399 GGGTGGAGAGACGTCTGC 59.426 66.667 25.58 14.51 41.47 4.26
92 93 0.972983 ATGGGGTGGAGAGACGTCTG 60.973 60.000 25.58 0.00 30.97 3.51
93 94 0.684805 GATGGGGTGGAGAGACGTCT 60.685 60.000 20.18 20.18 34.86 4.18
94 95 1.677637 GGATGGGGTGGAGAGACGTC 61.678 65.000 7.70 7.70 0.00 4.34
95 96 1.686110 GGATGGGGTGGAGAGACGT 60.686 63.158 0.00 0.00 0.00 4.34
96 97 1.381872 AGGATGGGGTGGAGAGACG 60.382 63.158 0.00 0.00 0.00 4.18
97 98 1.051556 GGAGGATGGGGTGGAGAGAC 61.052 65.000 0.00 0.00 0.00 3.36
98 99 1.314867 GGAGGATGGGGTGGAGAGA 59.685 63.158 0.00 0.00 0.00 3.10
99 100 2.136878 CGGAGGATGGGGTGGAGAG 61.137 68.421 0.00 0.00 0.00 3.20
100 101 1.586586 TACGGAGGATGGGGTGGAGA 61.587 60.000 0.00 0.00 0.00 3.71
101 102 1.075525 TACGGAGGATGGGGTGGAG 60.076 63.158 0.00 0.00 0.00 3.86
102 103 1.382146 GTACGGAGGATGGGGTGGA 60.382 63.158 0.00 0.00 0.00 4.02
103 104 2.440817 GGTACGGAGGATGGGGTGG 61.441 68.421 0.00 0.00 0.00 4.61
104 105 0.981277 AAGGTACGGAGGATGGGGTG 60.981 60.000 0.00 0.00 0.00 4.61
105 106 0.253020 AAAGGTACGGAGGATGGGGT 60.253 55.000 0.00 0.00 0.00 4.95
106 107 0.916809 AAAAGGTACGGAGGATGGGG 59.083 55.000 0.00 0.00 0.00 4.96
107 108 1.838077 AGAAAAGGTACGGAGGATGGG 59.162 52.381 0.00 0.00 0.00 4.00
108 109 3.055385 TCAAGAAAAGGTACGGAGGATGG 60.055 47.826 0.00 0.00 0.00 3.51
109 110 3.933332 GTCAAGAAAAGGTACGGAGGATG 59.067 47.826 0.00 0.00 0.00 3.51
110 111 3.838903 AGTCAAGAAAAGGTACGGAGGAT 59.161 43.478 0.00 0.00 0.00 3.24
111 112 3.236896 AGTCAAGAAAAGGTACGGAGGA 58.763 45.455 0.00 0.00 0.00 3.71
112 113 3.679824 AGTCAAGAAAAGGTACGGAGG 57.320 47.619 0.00 0.00 0.00 4.30
113 114 4.377897 ACAAGTCAAGAAAAGGTACGGAG 58.622 43.478 0.00 0.00 0.00 4.63
114 115 4.411256 ACAAGTCAAGAAAAGGTACGGA 57.589 40.909 0.00 0.00 0.00 4.69
115 116 5.494632 AAACAAGTCAAGAAAAGGTACGG 57.505 39.130 0.00 0.00 0.00 4.02
116 117 6.319399 ACAAAACAAGTCAAGAAAAGGTACG 58.681 36.000 0.00 0.00 0.00 3.67
117 118 8.528917 AAACAAAACAAGTCAAGAAAAGGTAC 57.471 30.769 0.00 0.00 0.00 3.34
118 119 8.983724 CAAAACAAAACAAGTCAAGAAAAGGTA 58.016 29.630 0.00 0.00 0.00 3.08
119 120 7.497579 ACAAAACAAAACAAGTCAAGAAAAGGT 59.502 29.630 0.00 0.00 0.00 3.50
120 121 7.860613 ACAAAACAAAACAAGTCAAGAAAAGG 58.139 30.769 0.00 0.00 0.00 3.11
121 122 9.715123 AAACAAAACAAAACAAGTCAAGAAAAG 57.285 25.926 0.00 0.00 0.00 2.27
160 161 8.936864 GGAAAGACATCGAAGAAAAGAAATAGA 58.063 33.333 0.00 0.00 43.58 1.98
161 162 8.940952 AGGAAAGACATCGAAGAAAAGAAATAG 58.059 33.333 0.00 0.00 43.58 1.73
162 163 8.848474 AGGAAAGACATCGAAGAAAAGAAATA 57.152 30.769 0.00 0.00 43.58 1.40
163 164 7.751768 AGGAAAGACATCGAAGAAAAGAAAT 57.248 32.000 0.00 0.00 43.58 2.17
164 165 7.568199 AAGGAAAGACATCGAAGAAAAGAAA 57.432 32.000 0.00 0.00 43.58 2.52
165 166 7.499232 AGAAAGGAAAGACATCGAAGAAAAGAA 59.501 33.333 0.00 0.00 43.58 2.52
166 167 6.992715 AGAAAGGAAAGACATCGAAGAAAAGA 59.007 34.615 0.00 0.00 43.58 2.52
167 168 7.195839 AGAAAGGAAAGACATCGAAGAAAAG 57.804 36.000 0.00 0.00 43.58 2.27
168 169 7.568199 AAGAAAGGAAAGACATCGAAGAAAA 57.432 32.000 0.00 0.00 43.58 2.29
169 170 7.931948 AGTAAGAAAGGAAAGACATCGAAGAAA 59.068 33.333 0.00 0.00 43.58 2.52
170 171 7.442656 AGTAAGAAAGGAAAGACATCGAAGAA 58.557 34.615 0.00 0.00 43.58 2.52
171 172 6.994221 AGTAAGAAAGGAAAGACATCGAAGA 58.006 36.000 0.00 0.00 45.75 2.87
172 173 7.659652 AAGTAAGAAAGGAAAGACATCGAAG 57.340 36.000 0.00 0.00 0.00 3.79
173 174 8.446599 AAAAGTAAGAAAGGAAAGACATCGAA 57.553 30.769 0.00 0.00 0.00 3.71
174 175 7.931948 AGAAAAGTAAGAAAGGAAAGACATCGA 59.068 33.333 0.00 0.00 0.00 3.59
175 176 8.089115 AGAAAAGTAAGAAAGGAAAGACATCG 57.911 34.615 0.00 0.00 0.00 3.84
200 201 9.818796 GTGCACTTTGAAAACATAAAAGAAAAA 57.181 25.926 10.32 0.00 35.39 1.94
201 202 8.165428 CGTGCACTTTGAAAACATAAAAGAAAA 58.835 29.630 16.19 0.00 35.39 2.29
202 203 7.542477 TCGTGCACTTTGAAAACATAAAAGAAA 59.458 29.630 16.19 0.00 35.39 2.52
203 204 7.030165 TCGTGCACTTTGAAAACATAAAAGAA 58.970 30.769 16.19 0.00 35.39 2.52
204 205 6.556212 TCGTGCACTTTGAAAACATAAAAGA 58.444 32.000 16.19 0.00 35.39 2.52
205 206 6.804534 TCGTGCACTTTGAAAACATAAAAG 57.195 33.333 16.19 0.00 37.04 2.27
206 207 7.763172 ATTCGTGCACTTTGAAAACATAAAA 57.237 28.000 16.19 0.00 0.00 1.52
207 208 7.704472 AGAATTCGTGCACTTTGAAAACATAAA 59.296 29.630 16.19 0.00 0.00 1.40
208 209 7.199766 AGAATTCGTGCACTTTGAAAACATAA 58.800 30.769 16.19 0.00 0.00 1.90
209 210 6.734137 AGAATTCGTGCACTTTGAAAACATA 58.266 32.000 16.19 0.00 0.00 2.29
210 211 5.591099 AGAATTCGTGCACTTTGAAAACAT 58.409 33.333 16.19 0.35 0.00 2.71
211 212 4.992688 AGAATTCGTGCACTTTGAAAACA 58.007 34.783 16.19 0.00 0.00 2.83
212 213 5.949233 AAGAATTCGTGCACTTTGAAAAC 57.051 34.783 16.19 9.29 0.00 2.43
213 214 6.096036 TGAAAGAATTCGTGCACTTTGAAAA 58.904 32.000 16.19 0.03 38.46 2.29
214 215 5.645624 TGAAAGAATTCGTGCACTTTGAAA 58.354 33.333 16.19 1.82 38.46 2.69
215 216 5.242069 TGAAAGAATTCGTGCACTTTGAA 57.758 34.783 16.19 11.54 38.46 2.69
216 217 4.891627 TGAAAGAATTCGTGCACTTTGA 57.108 36.364 16.19 1.57 38.46 2.69
217 218 5.947503 TTTGAAAGAATTCGTGCACTTTG 57.052 34.783 16.19 0.00 38.46 2.77
218 219 7.165427 GAATTTGAAAGAATTCGTGCACTTT 57.835 32.000 16.19 7.25 38.46 2.66
219 220 6.753897 GAATTTGAAAGAATTCGTGCACTT 57.246 33.333 16.19 1.83 38.46 3.16
308 309 9.872757 GTTCATCGACTTTAACAAATAAGTTCA 57.127 29.630 0.00 0.00 34.88 3.18
323 324 8.915654 GCAAATTTGATAAAAGTTCATCGACTT 58.084 29.630 22.31 0.00 41.44 3.01
324 325 7.271223 CGCAAATTTGATAAAAGTTCATCGACT 59.729 33.333 22.31 0.00 0.00 4.18
325 326 7.270365 TCGCAAATTTGATAAAAGTTCATCGAC 59.730 33.333 22.31 0.00 0.00 4.20
326 327 7.301789 TCGCAAATTTGATAAAAGTTCATCGA 58.698 30.769 22.31 12.44 0.00 3.59
327 328 7.491254 TCGCAAATTTGATAAAAGTTCATCG 57.509 32.000 22.31 10.42 0.00 3.84
328 329 7.062138 TGCTCGCAAATTTGATAAAAGTTCATC 59.938 33.333 22.31 0.00 0.00 2.92
329 330 6.867816 TGCTCGCAAATTTGATAAAAGTTCAT 59.132 30.769 22.31 0.00 0.00 2.57
330 331 6.212235 TGCTCGCAAATTTGATAAAAGTTCA 58.788 32.000 22.31 3.78 0.00 3.18
331 332 6.689178 TGCTCGCAAATTTGATAAAAGTTC 57.311 33.333 22.31 0.00 0.00 3.01
332 333 7.656707 AATGCTCGCAAATTTGATAAAAGTT 57.343 28.000 22.31 5.04 0.00 2.66
333 334 7.656707 AAATGCTCGCAAATTTGATAAAAGT 57.343 28.000 22.31 0.44 0.00 2.66
334 335 8.437742 AGAAAATGCTCGCAAATTTGATAAAAG 58.562 29.630 22.31 10.86 0.00 2.27
335 336 8.309163 AGAAAATGCTCGCAAATTTGATAAAA 57.691 26.923 22.31 4.24 0.00 1.52
336 337 7.887996 AGAAAATGCTCGCAAATTTGATAAA 57.112 28.000 22.31 3.18 0.00 1.40
337 338 8.978564 TTAGAAAATGCTCGCAAATTTGATAA 57.021 26.923 22.31 5.03 0.00 1.75
338 339 8.978564 TTTAGAAAATGCTCGCAAATTTGATA 57.021 26.923 22.31 7.48 0.00 2.15
339 340 7.887996 TTTAGAAAATGCTCGCAAATTTGAT 57.112 28.000 22.31 2.95 0.00 2.57
340 341 7.706281 TTTTAGAAAATGCTCGCAAATTTGA 57.294 28.000 22.31 0.36 0.00 2.69
341 342 8.833264 CAATTTTAGAAAATGCTCGCAAATTTG 58.167 29.630 14.03 14.03 38.53 2.32
342 343 8.772705 TCAATTTTAGAAAATGCTCGCAAATTT 58.227 25.926 1.10 0.86 38.53 1.82
343 344 8.309163 TCAATTTTAGAAAATGCTCGCAAATT 57.691 26.923 1.10 0.00 38.53 1.82
344 345 7.887996 TCAATTTTAGAAAATGCTCGCAAAT 57.112 28.000 1.10 0.00 38.53 2.32
345 346 7.598118 TCATCAATTTTAGAAAATGCTCGCAAA 59.402 29.630 1.10 0.00 38.53 3.68
346 347 7.089538 TCATCAATTTTAGAAAATGCTCGCAA 58.910 30.769 1.10 0.00 38.53 4.85
347 348 6.619744 TCATCAATTTTAGAAAATGCTCGCA 58.380 32.000 1.10 0.00 38.53 5.10
348 349 7.274250 AGTTCATCAATTTTAGAAAATGCTCGC 59.726 33.333 1.10 0.00 38.53 5.03
349 350 8.679288 AGTTCATCAATTTTAGAAAATGCTCG 57.321 30.769 1.10 0.00 38.53 5.03
351 352 9.985730 TCAAGTTCATCAATTTTAGAAAATGCT 57.014 25.926 1.10 0.00 38.53 3.79
361 362 9.688592 GAGAAGTTCATCAAGTTCATCAATTTT 57.311 29.630 5.50 0.00 42.42 1.82
362 363 9.075678 AGAGAAGTTCATCAAGTTCATCAATTT 57.924 29.630 5.50 0.00 42.42 1.82
363 364 8.632906 AGAGAAGTTCATCAAGTTCATCAATT 57.367 30.769 5.50 0.00 42.42 2.32
364 365 7.881751 TGAGAGAAGTTCATCAAGTTCATCAAT 59.118 33.333 5.50 0.00 42.42 2.57
365 366 7.219322 TGAGAGAAGTTCATCAAGTTCATCAA 58.781 34.615 5.50 0.00 42.42 2.57
366 367 6.762333 TGAGAGAAGTTCATCAAGTTCATCA 58.238 36.000 5.50 1.00 42.42 3.07
367 368 7.172190 TGTTGAGAGAAGTTCATCAAGTTCATC 59.828 37.037 18.58 10.03 42.42 2.92
368 369 6.994496 TGTTGAGAGAAGTTCATCAAGTTCAT 59.006 34.615 18.58 0.00 42.42 2.57
369 370 6.348498 TGTTGAGAGAAGTTCATCAAGTTCA 58.652 36.000 18.58 12.81 42.42 3.18
370 371 6.851222 TGTTGAGAGAAGTTCATCAAGTTC 57.149 37.500 18.58 11.04 40.89 3.01
371 372 7.050377 TCTTGTTGAGAGAAGTTCATCAAGTT 58.950 34.615 18.58 0.00 44.71 2.66
372 373 6.586344 TCTTGTTGAGAGAAGTTCATCAAGT 58.414 36.000 18.58 0.00 44.71 3.16
373 374 7.387122 TGATCTTGTTGAGAGAAGTTCATCAAG 59.613 37.037 18.58 15.03 45.23 3.02
374 375 7.219322 TGATCTTGTTGAGAGAAGTTCATCAA 58.781 34.615 15.66 15.66 37.93 2.57
375 376 6.762333 TGATCTTGTTGAGAGAAGTTCATCA 58.238 36.000 5.50 6.19 37.93 3.07
376 377 7.664082 TTGATCTTGTTGAGAGAAGTTCATC 57.336 36.000 5.50 3.52 35.83 2.92
377 378 8.348507 GTTTTGATCTTGTTGAGAGAAGTTCAT 58.651 33.333 5.50 0.00 35.83 2.57
378 379 7.554118 AGTTTTGATCTTGTTGAGAGAAGTTCA 59.446 33.333 5.50 0.00 37.93 3.18
379 380 7.924940 AGTTTTGATCTTGTTGAGAGAAGTTC 58.075 34.615 0.00 0.00 37.93 3.01
380 381 7.872113 AGTTTTGATCTTGTTGAGAGAAGTT 57.128 32.000 0.00 0.00 37.93 2.66
381 382 7.872113 AAGTTTTGATCTTGTTGAGAGAAGT 57.128 32.000 0.00 0.00 37.93 3.01
382 383 9.578439 AAAAAGTTTTGATCTTGTTGAGAGAAG 57.422 29.630 0.61 0.00 37.93 2.85
484 485 9.511144 GGAAAAAGTCTTTACGAATTTGAAAGA 57.489 29.630 12.54 12.54 38.83 2.52
485 486 9.296400 TGGAAAAAGTCTTTACGAATTTGAAAG 57.704 29.630 0.00 5.66 38.83 2.62
486 487 9.640963 TTGGAAAAAGTCTTTACGAATTTGAAA 57.359 25.926 0.00 0.00 38.83 2.69
487 488 9.640963 TTTGGAAAAAGTCTTTACGAATTTGAA 57.359 25.926 0.00 0.00 38.83 2.69
488 489 9.078753 GTTTGGAAAAAGTCTTTACGAATTTGA 57.921 29.630 0.00 0.00 38.83 2.69
489 490 9.083080 AGTTTGGAAAAAGTCTTTACGAATTTG 57.917 29.630 0.00 0.00 38.83 2.32
490 491 9.297586 GAGTTTGGAAAAAGTCTTTACGAATTT 57.702 29.630 0.00 0.00 41.27 1.82
491 492 8.463607 TGAGTTTGGAAAAAGTCTTTACGAATT 58.536 29.630 0.00 0.00 34.15 2.17
492 493 7.992008 TGAGTTTGGAAAAAGTCTTTACGAAT 58.008 30.769 0.00 0.00 34.15 3.34
493 494 7.380431 TGAGTTTGGAAAAAGTCTTTACGAA 57.620 32.000 0.00 0.00 34.15 3.85
494 495 6.988622 TGAGTTTGGAAAAAGTCTTTACGA 57.011 33.333 0.00 0.00 34.15 3.43
495 496 7.414436 TCATGAGTTTGGAAAAAGTCTTTACG 58.586 34.615 0.00 0.00 34.15 3.18
496 497 9.020813 GTTCATGAGTTTGGAAAAAGTCTTTAC 57.979 33.333 0.00 0.00 34.15 2.01
497 498 8.966868 AGTTCATGAGTTTGGAAAAAGTCTTTA 58.033 29.630 0.00 0.00 34.15 1.85
498 499 7.840931 AGTTCATGAGTTTGGAAAAAGTCTTT 58.159 30.769 0.00 0.00 34.15 2.52
499 500 7.410120 AGTTCATGAGTTTGGAAAAAGTCTT 57.590 32.000 0.00 0.00 34.15 3.01
500 501 7.410120 AAGTTCATGAGTTTGGAAAAAGTCT 57.590 32.000 0.00 0.00 34.15 3.24
501 502 8.479313 AAAAGTTCATGAGTTTGGAAAAAGTC 57.521 30.769 6.03 0.12 31.32 3.01
502 503 8.846943 AAAAAGTTCATGAGTTTGGAAAAAGT 57.153 26.923 6.03 0.00 31.32 2.66
546 547 9.360093 TGAACTCAAAAATTGAACATACGTTTT 57.640 25.926 0.00 0.00 39.58 2.43
547 548 8.918961 TGAACTCAAAAATTGAACATACGTTT 57.081 26.923 0.00 0.00 39.58 3.60
548 549 8.918961 TTGAACTCAAAAATTGAACATACGTT 57.081 26.923 0.00 0.00 39.58 3.99
549 550 8.402472 TCTTGAACTCAAAAATTGAACATACGT 58.598 29.630 0.00 0.00 39.58 3.57
550 551 8.781067 TCTTGAACTCAAAAATTGAACATACG 57.219 30.769 0.00 0.00 39.58 3.06
552 553 9.912634 GGATCTTGAACTCAAAAATTGAACATA 57.087 29.630 0.00 0.00 39.58 2.29
553 554 7.874528 GGGATCTTGAACTCAAAAATTGAACAT 59.125 33.333 0.00 0.00 39.58 2.71
554 555 7.209475 GGGATCTTGAACTCAAAAATTGAACA 58.791 34.615 0.00 0.00 39.58 3.18
555 556 6.363357 CGGGATCTTGAACTCAAAAATTGAAC 59.637 38.462 0.00 0.00 39.58 3.18
556 557 6.040391 ACGGGATCTTGAACTCAAAAATTGAA 59.960 34.615 0.00 0.00 39.58 2.69
557 558 5.534654 ACGGGATCTTGAACTCAAAAATTGA 59.465 36.000 0.00 0.00 35.15 2.57
558 559 5.772521 ACGGGATCTTGAACTCAAAAATTG 58.227 37.500 0.00 0.00 35.15 2.32
559 560 6.040391 TCAACGGGATCTTGAACTCAAAAATT 59.960 34.615 0.00 0.00 35.15 1.82
560 561 5.534654 TCAACGGGATCTTGAACTCAAAAAT 59.465 36.000 0.00 0.00 35.15 1.82
561 562 4.884744 TCAACGGGATCTTGAACTCAAAAA 59.115 37.500 0.00 0.00 35.15 1.94
562 563 4.456535 TCAACGGGATCTTGAACTCAAAA 58.543 39.130 0.00 0.00 35.15 2.44
563 564 4.079980 TCAACGGGATCTTGAACTCAAA 57.920 40.909 0.00 0.00 35.15 2.69
564 565 3.762407 TCAACGGGATCTTGAACTCAA 57.238 42.857 0.00 0.00 0.00 3.02
565 566 3.557054 CCTTCAACGGGATCTTGAACTCA 60.557 47.826 4.88 0.00 34.60 3.41
566 567 3.003480 CCTTCAACGGGATCTTGAACTC 58.997 50.000 4.88 0.00 34.60 3.01
567 568 2.876079 GCCTTCAACGGGATCTTGAACT 60.876 50.000 4.88 0.00 34.60 3.01
568 569 1.468914 GCCTTCAACGGGATCTTGAAC 59.531 52.381 4.88 0.00 34.60 3.18
569 570 1.821216 GCCTTCAACGGGATCTTGAA 58.179 50.000 7.99 7.99 36.44 2.69
570 571 0.391130 CGCCTTCAACGGGATCTTGA 60.391 55.000 0.00 0.00 0.00 3.02
571 572 1.982073 GCGCCTTCAACGGGATCTTG 61.982 60.000 0.00 0.00 0.00 3.02
572 573 1.745489 GCGCCTTCAACGGGATCTT 60.745 57.895 0.00 0.00 0.00 2.40
573 574 2.125106 GCGCCTTCAACGGGATCT 60.125 61.111 0.00 0.00 0.00 2.75
574 575 3.564027 CGCGCCTTCAACGGGATC 61.564 66.667 0.00 0.00 45.25 3.36
579 580 1.636340 CTAATCCGCGCCTTCAACG 59.364 57.895 0.00 0.00 0.00 4.10
580 581 0.461339 TCCTAATCCGCGCCTTCAAC 60.461 55.000 0.00 0.00 0.00 3.18
581 582 0.179084 CTCCTAATCCGCGCCTTCAA 60.179 55.000 0.00 0.00 0.00 2.69
582 583 1.441729 CTCCTAATCCGCGCCTTCA 59.558 57.895 0.00 0.00 0.00 3.02
583 584 1.956678 GCTCCTAATCCGCGCCTTC 60.957 63.158 0.00 0.00 0.00 3.46
584 585 2.109181 GCTCCTAATCCGCGCCTT 59.891 61.111 0.00 0.00 0.00 4.35
585 586 2.840102 AGCTCCTAATCCGCGCCT 60.840 61.111 0.00 0.00 0.00 5.52
586 587 2.356433 GAGCTCCTAATCCGCGCC 60.356 66.667 0.87 0.00 0.00 6.53
587 588 2.356433 GGAGCTCCTAATCCGCGC 60.356 66.667 26.25 0.00 0.00 6.86
588 589 2.340443 GGGAGCTCCTAATCCGCG 59.660 66.667 31.36 0.00 36.38 6.46
589 590 2.340443 CGGGAGCTCCTAATCCGC 59.660 66.667 31.36 12.50 36.38 5.54
590 591 1.364171 CACGGGAGCTCCTAATCCG 59.636 63.158 31.36 26.18 45.42 4.18
591 592 0.831307 AACACGGGAGCTCCTAATCC 59.169 55.000 31.36 13.98 35.95 3.01
592 593 1.202545 GGAACACGGGAGCTCCTAATC 60.203 57.143 31.36 20.52 35.95 1.75
593 594 0.831307 GGAACACGGGAGCTCCTAAT 59.169 55.000 31.36 14.83 35.95 1.73
594 595 1.262640 GGGAACACGGGAGCTCCTAA 61.263 60.000 31.36 0.00 35.95 2.69
595 596 1.684734 GGGAACACGGGAGCTCCTA 60.685 63.158 31.36 0.00 35.95 2.94
625 627 6.540914 TGCGGGGTCTAATACTTCATTTTTAG 59.459 38.462 0.00 0.00 0.00 1.85
629 631 4.196971 GTGCGGGGTCTAATACTTCATTT 58.803 43.478 0.00 0.00 0.00 2.32
632 634 2.181125 TGTGCGGGGTCTAATACTTCA 58.819 47.619 0.00 0.00 0.00 3.02
633 635 2.973694 TGTGCGGGGTCTAATACTTC 57.026 50.000 0.00 0.00 0.00 3.01
634 636 3.926058 AATGTGCGGGGTCTAATACTT 57.074 42.857 0.00 0.00 0.00 2.24
636 638 3.537580 TGAAATGTGCGGGGTCTAATAC 58.462 45.455 0.00 0.00 0.00 1.89
637 639 3.916359 TGAAATGTGCGGGGTCTAATA 57.084 42.857 0.00 0.00 0.00 0.98
638 640 2.799126 TGAAATGTGCGGGGTCTAAT 57.201 45.000 0.00 0.00 0.00 1.73
640 642 2.026729 TGATTGAAATGTGCGGGGTCTA 60.027 45.455 0.00 0.00 0.00 2.59
641 643 1.271871 TGATTGAAATGTGCGGGGTCT 60.272 47.619 0.00 0.00 0.00 3.85
642 644 1.173043 TGATTGAAATGTGCGGGGTC 58.827 50.000 0.00 0.00 0.00 4.46
644 646 1.732077 CGTTGATTGAAATGTGCGGGG 60.732 52.381 0.00 0.00 0.00 5.73
683 686 1.407025 GGGCTTTAGTCTGCAGGTACC 60.407 57.143 15.13 2.73 0.00 3.34
684 687 1.278127 TGGGCTTTAGTCTGCAGGTAC 59.722 52.381 15.13 5.57 0.00 3.34
696 699 1.003839 CTCGGTGCACTGGGCTTTA 60.004 57.895 25.15 4.05 45.15 1.85
735 738 2.030401 CGTGGTTCGATTTGCCCGA 61.030 57.895 0.00 0.00 42.86 5.14
737 740 2.874751 CCGTGGTTCGATTTGCCC 59.125 61.111 0.00 0.00 42.86 5.36
900 903 1.373121 GGTTATAGAGGAGCGCGGC 60.373 63.158 8.83 0.00 0.00 6.53
1120 1127 2.110967 CCTTGAGGGCGCACATCAG 61.111 63.158 14.57 3.31 41.44 2.90
1168 1175 2.429058 CCCGGATAGCAGCAGCAT 59.571 61.111 0.73 0.00 45.49 3.79
1174 1181 1.190833 AGGATCAGCCCGGATAGCAG 61.191 60.000 0.73 0.00 37.37 4.24
1179 1186 3.564218 GCCAGGATCAGCCCGGAT 61.564 66.667 0.73 0.00 37.37 4.18
1227 1234 1.191489 TGAAGATGACCAGCACGGGA 61.191 55.000 0.00 0.00 40.22 5.14
1332 1339 0.243907 ACATCCACGAGAACACGGAG 59.756 55.000 0.00 0.00 37.61 4.63
1521 1528 4.705492 TCGTACGCTATATCGTTCATCAC 58.295 43.478 11.24 0.00 43.15 3.06
1543 1553 3.566853 CGCGCACGGATCAGCAAT 61.567 61.111 8.75 0.00 34.97 3.56
1586 1596 2.126812 GTCGTCGACTTGCTCGCT 60.127 61.111 18.09 0.00 42.62 4.93
1667 1678 3.705579 ACTGCTAGAGTACTAGGACGAGA 59.294 47.826 0.00 0.00 44.33 4.04
1670 1681 5.299148 ACATACTGCTAGAGTACTAGGACG 58.701 45.833 0.00 0.00 44.33 4.79
1672 1683 6.771749 GGAAACATACTGCTAGAGTACTAGGA 59.228 42.308 0.00 0.00 44.33 2.94
1673 1684 6.293516 CGGAAACATACTGCTAGAGTACTAGG 60.294 46.154 0.00 0.00 44.33 3.02
1674 1685 6.260493 ACGGAAACATACTGCTAGAGTACTAG 59.740 42.308 0.00 0.00 46.21 2.57
1758 1772 6.696583 TGGCAATTTATTCATCATAAACGCAG 59.303 34.615 10.45 0.00 39.66 5.18
1759 1773 6.567959 TGGCAATTTATTCATCATAAACGCA 58.432 32.000 10.45 0.00 39.66 5.24
1760 1774 7.222611 ACTTGGCAATTTATTCATCATAAACGC 59.777 33.333 0.00 0.00 39.66 4.84
1788 1802 1.893808 CAGTTGCACACTTCGCCCT 60.894 57.895 0.00 0.00 30.92 5.19
1874 1896 4.142687 GGTTGATTTTGGAGTCGTATGTGG 60.143 45.833 0.00 0.00 0.00 4.17
1875 1897 4.695455 AGGTTGATTTTGGAGTCGTATGTG 59.305 41.667 0.00 0.00 0.00 3.21
1877 1899 6.978343 TTAGGTTGATTTTGGAGTCGTATG 57.022 37.500 0.00 0.00 0.00 2.39
1879 1901 7.043565 GGTATTAGGTTGATTTTGGAGTCGTA 58.956 38.462 0.00 0.00 0.00 3.43
1881 1903 5.878116 TGGTATTAGGTTGATTTTGGAGTCG 59.122 40.000 0.00 0.00 0.00 4.18
1887 1909 8.798402 TGGTAAGTTGGTATTAGGTTGATTTTG 58.202 33.333 0.00 0.00 0.00 2.44
1888 1910 8.943594 TGGTAAGTTGGTATTAGGTTGATTTT 57.056 30.769 0.00 0.00 0.00 1.82
1889 1911 8.943594 TTGGTAAGTTGGTATTAGGTTGATTT 57.056 30.769 0.00 0.00 0.00 2.17
1890 1912 8.943594 TTTGGTAAGTTGGTATTAGGTTGATT 57.056 30.769 0.00 0.00 0.00 2.57
1891 1913 8.966868 CATTTGGTAAGTTGGTATTAGGTTGAT 58.033 33.333 0.00 0.00 0.00 2.57
1892 1914 8.164733 TCATTTGGTAAGTTGGTATTAGGTTGA 58.835 33.333 0.00 0.00 0.00 3.18
1893 1915 8.241367 GTCATTTGGTAAGTTGGTATTAGGTTG 58.759 37.037 0.00 0.00 0.00 3.77
1894 1916 8.168058 AGTCATTTGGTAAGTTGGTATTAGGTT 58.832 33.333 0.00 0.00 0.00 3.50
1895 1917 7.696017 AGTCATTTGGTAAGTTGGTATTAGGT 58.304 34.615 0.00 0.00 0.00 3.08
1896 1918 9.847224 ATAGTCATTTGGTAAGTTGGTATTAGG 57.153 33.333 0.00 0.00 0.00 2.69
1898 1920 9.621629 CCATAGTCATTTGGTAAGTTGGTATTA 57.378 33.333 0.00 0.00 0.00 0.98
1899 1921 8.113462 ACCATAGTCATTTGGTAAGTTGGTATT 58.887 33.333 0.00 0.00 44.36 1.89
1900 1922 7.639378 ACCATAGTCATTTGGTAAGTTGGTAT 58.361 34.615 0.00 0.00 44.36 2.73
1901 1923 7.023171 ACCATAGTCATTTGGTAAGTTGGTA 57.977 36.000 0.00 0.00 44.36 3.25
1902 1924 5.887754 ACCATAGTCATTTGGTAAGTTGGT 58.112 37.500 0.00 0.00 44.36 3.67
1909 1931 7.612065 ATGCTAGTACCATAGTCATTTGGTA 57.388 36.000 0.00 0.00 44.36 3.25
1911 1933 7.118390 GCTAATGCTAGTACCATAGTCATTTGG 59.882 40.741 12.52 0.00 34.42 3.28
1912 1934 8.023050 GCTAATGCTAGTACCATAGTCATTTG 57.977 38.462 12.52 11.94 34.42 2.32
1927 1949 8.046220 GTGGAAAAACACAAGAGCTAATGCTAG 61.046 40.741 0.00 0.00 44.31 3.42
1928 1950 6.293955 GTGGAAAAACACAAGAGCTAATGCTA 60.294 38.462 0.00 0.00 44.31 3.49
1929 1951 5.507985 GTGGAAAAACACAAGAGCTAATGCT 60.508 40.000 0.00 0.00 45.66 3.79
1930 1952 4.681483 GTGGAAAAACACAAGAGCTAATGC 59.319 41.667 0.00 0.00 40.99 3.56
1948 1970 4.900684 TGATTTTGGAGTCGTATGTGGAA 58.099 39.130 0.00 0.00 0.00 3.53
1951 1973 4.695455 AGGTTGATTTTGGAGTCGTATGTG 59.305 41.667 0.00 0.00 0.00 3.21
1957 1979 5.878116 TGGTATTAGGTTGATTTTGGAGTCG 59.122 40.000 0.00 0.00 0.00 4.18
1958 1980 7.393515 AGTTGGTATTAGGTTGATTTTGGAGTC 59.606 37.037 0.00 0.00 0.00 3.36
1959 1981 7.238710 AGTTGGTATTAGGTTGATTTTGGAGT 58.761 34.615 0.00 0.00 0.00 3.85
1960 1982 7.703058 AGTTGGTATTAGGTTGATTTTGGAG 57.297 36.000 0.00 0.00 0.00 3.86
1961 1983 9.016438 GTAAGTTGGTATTAGGTTGATTTTGGA 57.984 33.333 0.00 0.00 0.00 3.53
1963 1985 8.798402 TGGTAAGTTGGTATTAGGTTGATTTTG 58.202 33.333 0.00 0.00 0.00 2.44
1969 1991 8.241367 GTCATTTGGTAAGTTGGTATTAGGTTG 58.759 37.037 0.00 0.00 0.00 3.77
1972 1994 9.847224 ATAGTCATTTGGTAAGTTGGTATTAGG 57.153 33.333 0.00 0.00 0.00 2.69
1991 2019 7.092846 GGGGATTAATGCTAGTACCATAGTCAT 60.093 40.741 6.93 0.00 0.00 3.06
2063 2092 6.882610 TGCATTACATTATTGTCCATCTCC 57.117 37.500 0.00 0.00 37.28 3.71
2082 2111 5.049954 ACGTTTCATAAACACTACGTTGCAT 60.050 36.000 0.00 0.00 41.44 3.96
2113 2144 2.514205 AGCATTGCTTTGTGTGTTCC 57.486 45.000 5.03 0.00 33.89 3.62
2168 2201 4.634443 GCGATACAACTACCAGGAAACATT 59.366 41.667 0.00 0.00 0.00 2.71
2176 2209 2.794910 CCGAATGCGATACAACTACCAG 59.205 50.000 0.00 0.00 40.82 4.00
2177 2210 2.427812 TCCGAATGCGATACAACTACCA 59.572 45.455 0.00 0.00 40.82 3.25
2178 2211 3.050619 CTCCGAATGCGATACAACTACC 58.949 50.000 0.00 0.00 40.82 3.18
2204 2237 2.338809 TCAGTCATCCCCTGAAACAGT 58.661 47.619 0.00 0.00 36.07 3.55
2224 2257 9.520204 CACAACAGAACAGAACAAAAGAATATT 57.480 29.630 0.00 0.00 0.00 1.28
2232 2265 6.964370 CGTAAATCACAACAGAACAGAACAAA 59.036 34.615 0.00 0.00 0.00 2.83
2258 2291 1.674817 CCCATCTACAAACCGCTCGTT 60.675 52.381 0.00 0.00 35.70 3.85
2314 2414 1.068895 TCGTCGCCTGAAACACCTTTA 59.931 47.619 0.00 0.00 0.00 1.85
2420 2521 2.712102 AACAAACCGCTCGTGTGTACG 61.712 52.381 0.00 0.00 42.48 3.67
2422 2523 0.931702 CAACAAACCGCTCGTGTGTA 59.068 50.000 0.00 0.00 42.48 2.90
2423 2524 1.022451 ACAACAAACCGCTCGTGTGT 61.022 50.000 0.00 0.00 45.44 3.72
2424 2525 0.588730 CACAACAAACCGCTCGTGTG 60.589 55.000 0.00 0.00 35.59 3.82
2425 2526 0.741574 TCACAACAAACCGCTCGTGT 60.742 50.000 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.