>input_sequence_78751
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-------------------------------------------AT---GGCTGACCACCACAGAGACAGGGGTGTCCTAG
GCGGCGGCGGCGCCTTCGGCGACCGCAGTGGCCATGGAGGCTACGGCGGCGACCACCACGAGCAGCACCAGCAGAAGCAG
CCCGCGCTGATGTGCGCCCTCAAGGCCGCGACGGCGGCCACGGCCGCCGGGTCGATGCTGCTGCTATCCGGGCTGATCCT
GGCAGGCACCGTCATCGCGCTCACCGTGGCCACTCCCGTGCTGGTCATCTTCAGCCCGGTGCTGGTGCCGGCGGCCATCG
CGCTGGCGCTCATGTCCGCCGGCTTCGTGACGTCCGGCGGGCTGGGCGTGGCGGCGCTCTCCGTGTTCTCGTGGATGTAC
AAGTACCTCACCGGCAAGCACCCGCCGGGCGCCGACCAGCTGGACCACGCCAAGGCGCGGCTCGCGTCCAAGGCCCGCGA
CATCAAGGACGCCGCGCAGACCCGCATCGACCAGGCGCAGGGGGCTTGA-------------------------------
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>chr2B_1_TraesCS2B01G436400
ACCAGTGGTGCTTGGCGACAAATGATTTGGTAGACGAGTTCGCTACAAAAGAGTTACGTCTGGTTGGAGGGACTTGTGAT
TGAACACAGGAGCAGACGTCTCTCCACCCCATCCTCCGTACCTTTTCTTGACTTGTTTTGTTTTGTTTTTTCTTTCTTTT
TCTATTTCTTTTCTTCGATGTCTTTCCTTTCTTACTTTTCTTTTTCTTTTATGTTTTCAAAGTGCACGAATTCTTTCAAA
TTCGATGATTTGTTTTTTTCAAATTGTATGAACTTTTTTTACATTGGTGATCTTTTTTTCAAAATAGATGAACTTATTTG
TTAAAGTCGATGAACTTTTATCAAATTTGCGAGCATTTTCTAAAATTGATGAACTTGATGAACTTCTCTCAACAAGATCA
AAACTTTTTTTTTCTAAATTGATAAACTTTTTAAAAATTACAAACCTTTTTAAATTTTGTGAAGTATTTTTAAATTCACA
AATTTCTTTCAAATTCGTAAAGACTTTTTCCAAACTCATGAACTTTTTTAAACTCATGTAATTTTTAAAACGTATGTTCA
ATTTTTGAGTTCAAGATCCCGTTGAAGGCGCGGATTAGGAGCTCCCGTGTTCCC-GTTGATCTGAGCTAAAAATGAAGTA
TTAGAC-CCCGCACATTTCAATCAACGCATGGACTAGCCCATCATGGTACCTGCAGACTAAAGCCCAGTGCACCGAGCCC
ACGGGACCGTTCAACCATCGGGCAAATCGAACCACGGCCAGGACCTCGTACGTATCGCCAGCCGGGCACAGCGACACCGC
GCCCGCCGCGCCAGCACAGGTGTCGCGGCGCGCCCGACACGAGTGCTCGCATGCGTCCCACGCGGCCGCTCCAGCTCCGG
CCTCCTCCACGTAACACCATGCGCCGCGCTCCTCTATAACCTCACTCCCCT-CCCCTCGCTCCCTTCACTCACACCGAGC
GTGCTCCGGTAGTGCCCCTCCCTCCACACGTTCCTTCCTTCGCAT---GGCTGACCACCACAGAGACAGGGGTGTCCTAG
GCGGCGGCGGCGCCTTCGGCGACCGCAGTGGCCATGGAGGCTACGGCGGCGACCACCACGAGCAGCACCAGCAGAAGCAG
CCCGCGCTGATGTGCGCCCTCAAGGCCGCGACGGCGGCCACGGCCGCCGGGTCGATGCTGCTGCTATCCGGGCTGATCCT
GGCAGGCACCGTCATCGCGCTCACCGTGGCCACTCCCGTGCTGGTCATCTTCAGCCCGGTGCTGGTGCCGGCGGCCATCG
CGCTGGCGCTCATGTCCGCCGGCTTCGTGACGTCCGGCGGGCTGGGCGTGGCGGCGCTCTCCGTGTTCTCGTGGATGTAC
AAGTACCTCACCGGCAAGCACCCGCCGGGCGCCGACCAGCTGGACCACGCCAAGGCGCGGCTCGCGTCCAAGGCCCGCGA
CATCAAGGACGCCGCGCAGACCCGCATCGACCAGGCGCAGGGGGCTTGAAGATGAGGTGCGTGCCCCGACGCGCGGCCGA
TGCGTGGGTGATGA---ACGATATAGCGTACGATTGCTGATCCGTGCGCGCGTTTGATCGCCGCCGTGCCCGCCGAGCGA
GCAAGTCGACGACGTTTACCACCTG-TTGTGCTATCCGACCGAGTGCGTGTTTAGACTTTTGTTGTGAACTAGTTGTTCT
CGTCCTAGTACTCTAGCAGTATGTTTCCGTGGTCGAAGTCGGGAGAGGGTCTGGATGCTGGATGTA---TGGTGTGTGCT
TGTGGATGTCTCTGCGTTTATGATGAATAAATTGCCAAGTTAGGGCGAAGTGTGCAACTGTTCTTGTGGATGTCTCTTAT
CTCTTCTGAAATGCAACT--------TGCAGAAGAGACTAGGCTCTTGTGTTTTTCCACATACGACTCCAAAATCAACCT
AATACCAACTTACCAAATGACTATGGTACTAGCATTAGCTCTTGTGTTTTTCCACATACGACTCCAAAATCAACC-----
-TAATACCAACTTACCAAATGACTATGGTACTAGCATTAATCCCCTGTGCAAGCATACGGTTAATTTGTT-AACAAGAGA
TCTGATCTCCTGGAGATGGACAATAATGTAATGCAACGTAGTGTTT--ATGAAACGTTTGAAGGGAACACACAAAGCAAT
GCTTTTCCTTC--TTTTTTTCCATGAAGGAAATGCTTGTCAATGTTTCCTGGTAGTTGTATCGCATTCGGAGTGATACTG
TTTCAGGGGATGACTGAATATTCTTTTGTTCTGTTCTGTTGTGATTTACGAACGAGCGGTTTGTAGATGGGGAGATTGTT
CAAAGATCTATC-------------------------------------------------------------------T
CTAGAAAGGAAAATAAAGGTGTTTCAGGCGACGACTGAATACTCTGCTGCTCTGTTCTGATGTGATATA-CACACGAGCG
GTTTGTTGTGATTTACGAACTCTGCTGCTCTGTTCTGTTACGTACA-----------CACGAGCGGTTTGTTGTGATTTA
CAGACGAGCGCTTTGTGGATGGGGAGATTGTTCA
>chr2D_584
GAAGCGCCCGGATTAGG---------------------------------------------------------------
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------------------------------------AGGAGCTCCCGTGTTCCCCGTTGATCTGAGGTAAGAAATGAAGT
TATTAGGCCCGCACATTTCAATCAACGCATGGACTAGCCCATCATCATACCTGCAGACCAAAGCCCAGTGCACCGAGCCC
ACGGGGCCGTTCAACCAGC-GGCAAATCGAACCACGGCCACGACCTCGTACGTATCGCCAGCCGGGGATGGCGACACCGC
ACCCGCCGCACCAGCACAGGTGTCGCGGCGCGCCCGACACGAGTGCTCGCATGCGTCCCACGCGGCCGCTCCAGCTCCGG
CCTC---CACGTAACACCATGCACCGCGCTCCTCTATAACCTCACTCCCCT-CCCCTCGCTCCCTTCACTCACGCCGAGC
GTGCTCCGGTAGTGCCCCTCCTTCCACACGTTCCTTCCTTCGCAT---GGCTGACCACCACAGAGACAGGGGCGTCCTAG
GCGGCGGCGGCGCCTTCGGCGACCGCAGTGGCCACGGAGGCTACGGCAGCGACCACCACGAGCAGCACCAGCAGAAGCAG
CCGGCGATGATGTGCGCGCTGAAGGCCGCGACGGCGGCCACGGCCGCCGGGTCGCTGCTGGTGCTGTCCGGGCTGATCCT
GGCGGGCACCGTCATCGCGCTCACCGTGGCCACACCCGTGCTGGTCATCTTCAGCCCGGTGCTGGTGCCGGCGGCCATCG
CGCTGGCGCTCATGTCCGCCGGGTTCGTGACGTCCGGCGGGCTGGGCGTGGCGGCGCTGTCCGTGTTCTCGTGGATGTAC
AAGTACCTCACCGGCAAGCACCCGCCGGGCGCCGACCAGCTGGACCACGCCAAGGCGCGGCTCGCGTCCAAGGCCCGCGA
CATCAAGGACGCCGCGCAGACCCGCATCGACCAGGCGCAGGGGGCTTGAAGAGGAGGTCCGTGCCCCGACGCGCGGCCGG
TGCGTGGATGATGATGAACGATATAGCGTACGGTTGCTGATCCGTGCGCGCGTTTGATCGCCGCCGCGCCCGCCGCGCGA
GCAAGTCGACGACGTTTACCACCTGTTTGTGCTATCCGACCGAGTGCGTGTTTAGACTTTTGTTGCGAACTAGTTGTCCT
AG---TAGTACTCTAGCAGTATGTTTCCGTGGTCGAAGTCGGGAGAGGGTCTGGATGCTGGATGTACTATGGTGTGTTCT
TGTGGATGTCTGCCCGTTTATGATGAATAAATTGCCAAGTTTGGGCGAAGTGTGCAACTGTTCTTGTGGATGTCTCTTAT
CGCTTCTGAAATGCAGCT--------TGCAGAAGAGACTAGGAGTGGGCACGATCTGAACCCAGGGGC------------
------------------------------------ATCTCTTGTGTTTCTCTACATATATGACTAAAATTAAAATTAAC
TTACTACGAACTTACCAAGTGACTATGGTACAAGCATTGATCCCCTATGCAAGCATACGGTTAATTTGTT-AACAAGAGA
TCTGATGTCCAAGAGATGGACAATAATGTAGTGCAACATAGTGTTTTTATGAAACGTTTGAAGTGAACAAACAAAGCAAT
GTTTTTCCTTCTTTTCTTTTCCATGAAGGAAATGCTTGTCGATGTTTCTA-GTGGCTATATCGCCTTCGGGGTGATGCTG
TTTCAGGGAATGACTGGATATTCTGTTGTTCTGTTCCGTTATGATTTACGGACGCGCGGTTTGTAGATGGGGAGATTGTT
CAAAGATCTCAAGTCTTCCCTCAAAAAATTAATATCTTAGTCTCTTTTTTCTTTCCCTTTTTGAAAGGAAGATCTCTAGT
CTAGAAAGGAAAACAAAGGTGTTCCAGGCGATGACTGAATGCTCTGCCGCTCTGTTCTGATGTGATACA-CACACAAGCG
GTTTGTTGTGATTTACGAACTCTGCTGCTCTGTTCTGTTGTGATATACGTAGACACGCACGAGCGGTTTGTTGTGATTCA
CAGACGAGGGCTTTGTGGATGGGGAAATTGTTCA
>chr2A_700
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-------------------------------------------------------------AGCCCAGTGCACCGAGCCC
ACGGGACCTTTCAACCAGC-GGCAAATCGAACCACGGCCAGGATCTCGTACATATCGCCAGCCGGGGACGGCGACACCGC
GCCCGCCGCACCAGCACAGGTGTCGCGGCGCGCCCGACACGAGTGCTCGCATGCGTCCCACGCGGCCGCTCCAGCTCCGG
CCTCCTCCACGTAAACCCATGCACCGCGCTCCTCTATAACCTCACTCCCCTTCCCCTCGCTCCCTTCACTCACAGCGAGC
GTGCTCCGGTACTTCCCCTCCCTCCACACGCACCTTCGTTCCCATGGCGGCTGACCACCACAGAGACAGGGGCGTCCTAG
GCGGCGGCGGCGCCTTCGGCGACCGCAGTGGCCACGGAGGCTACGGCGGCGACCACCACGAGCAGCAGCAGCAGAAGCAG
CCCGCGATGATGTGCGCTCTGAAGGCCGCGACGGCGGCCACGGCAGCCGGGTCACTGCTGGTGCTGTCCGGGCTGATCCT
GGCCGGCACCGTCATCGCGCTCACCGTGGCGACGCCCGTGCTGGTCATCTTCAGCCCGGTGCTGGTGCCGGCGGCCATCG
CGCTGGCGCTCATGTCCGCGGGGTTCGTGACGTCCGGCGGGCTGGGCGTGGCGGCGCTGTCCGTGTTCTCGTGGATGTAC
AAGTACCTCACCGGCAAGCACCCACCGGGCGCCGACCAGCTGGACCACGCCAAGGCGCGGCTCGCGTCCAAGGCCCGCGA
CATCAAGGACGCCGCGCAGACCCGCATCGACCAGGCGCAGGGGGCTTGAGGAGGAGGTTCGTGCTCCGGCGCGCGGCCGA
TGCGTGGATGATGATAAACGACATAGCGCACGGTTGCTGATCCGTGCGCGCGTTTGATCGCCGCCGCGCCCGCCGCGCGA
GCAAGTCGACGACGTTTACCACCTGTTTGTGCTATCCGACCGAGTGCGTGTTTAGACTTCTGTTGCGAACTAGTTGTCCT
AG---TAGTGCTCTAGCAGTATGTTTCCGTGGTCGAAGTTTGGAGAGGGTCTGGATGCTGGGTGTACTATGGTGTGTGCT
TGTGGATGTCCGA--GTTTATGATGAATAAATTGCCGAGTTTGGGC-AAGTGTGCAACTGTGCTTGTGGATGCCTCTTGT
CTCTTTTCACAAAAAAAAAAAGGATGTGCAGAAGAGACAAGGTCCTTCTGTTTATTTCTACATGACTC------------
----------------------------------------------------------------------TAAAATCAAC
TTAATACCAACTTACCAAGTGGGTATGGTACTAGCATTAATTCCCTGTGCAAGCATACGGTTAATTTGTTTAACAAGAGA
TCTGATCTCGTAGAGATGTTTATGAAACGTTTGAAGTG--------------AACATTTGAAGTGAACACACAGAGCAAT
GCTTTTCCTTC--TTTTTTTCCATGAAGGAAATGCTTGTCGATGTTTCTA-GTACTTGTATCGCATTCGGAGTGACTGAA
TAC-------------------------------TCTGTTGTGATTTACGGACGAGCGGTTTGTAGATGGGGAGATTGTT
CAAAGATCCGTC-------------------------------------------------------------------T
CTAGAAAGGAAAACAAAGGTGTTTCAGGCGACGACTGAATACTCTGCTGCCCTGTTCTGATGTGATATACCACACGAGCG
GTTTGTTGTGATTTACGAATACTGCTGCTCTGTTCTGTAGTGATATACGTAAAACACGAGTGG-GGTTTGTTGTGATTTA
CACACGAGCGCTTTGTGGATAGGGAGATTGTTCA
>SNPs
SSSSSSSSS-SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------S---S--SSS-SSS
-SSS-S---------------------------------------SS-----------S---------------------
-----------------S-S----------------------------------------------S--S----------
---------S----------------------------------------------------------------------
----------------------S---------------------------------------------------------
------------------------------------------------------------------------S-------
----------------------------------S---------------------------------------------
------S----------S--S---------------------------------S-----S----S--------------
---S-----------------------------S----------------------------------------------
----------------------S-----------------------------------S---------------------
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----------------------------------------------------S-----S---------------------
-------S------------------------S---------------------------------S--------S----
-----------------------------------------------------------------S-----------S--
S-SSS---------------------------------------------------------------------------
-----------SSS---------------------------S--------------------------------------
------------------------------------------SS-----------SS-S-S-S-----SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-----------S--S-----SSSSS-S-----S--SS-----
------------------S-------------------------------------------------------------
-----------S------------------S--------------------------------S----------------
----------------------------------------S-------SSS-------------------------S---
--------S-------S-------S-------------------------S-----------------------------
---------S----------------------------------------------------------------------
-------------S------------------------------------------------------------------
---------------------------------------SS-SSSS----------------------------------
----------------------------------
>forward_100
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TGAACACAGGAGCAGACGTC------------------------------------------------------------
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>reverse_1339
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----------------------------------------------------------CTCCGTGTTCTCGTGGATGT--
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>forward_104
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----CACAGGAGCAGACGTCTCTC--------------------------------------------------------
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>reverse_1802
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-----------------------------------------AGGGCGAAGTGTGCAACTG--------------------
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