Multiple sequence alignment - TraesCS2B01G432000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G432000 chr2B 100.000 2699 0 0 1 2699 621182209 621179511 0.000000e+00 4985.0
1 TraesCS2B01G432000 chr2B 94.444 90 5 0 2605 2694 597011868 597011779 3.620000e-29 139.0
2 TraesCS2B01G432000 chr2B 93.333 90 6 0 2605 2694 129258025 129258114 1.690000e-27 134.0
3 TraesCS2B01G432000 chr2D 93.836 2385 97 15 140 2515 526162225 526164568 0.000000e+00 3544.0
4 TraesCS2B01G432000 chr2A 91.628 2353 94 37 219 2515 670642957 670640652 0.000000e+00 3158.0
5 TraesCS2B01G432000 chr7B 93.617 94 5 1 2602 2694 712877898 712877805 3.620000e-29 139.0
6 TraesCS2B01G432000 chr1B 92.391 92 7 0 2605 2696 433047427 433047518 6.060000e-27 132.0
7 TraesCS2B01G432000 chr6B 90.909 88 8 0 2607 2694 626412503 626412590 4.720000e-23 119.0
8 TraesCS2B01G432000 chr4B 94.118 68 4 0 1 68 104746004 104746071 1.320000e-18 104.0
9 TraesCS2B01G432000 chr4A 90.789 76 7 0 9 84 11705592 11705517 4.750000e-18 102.0
10 TraesCS2B01G432000 chr6A 90.667 75 7 0 10 84 233812559 233812485 1.710000e-17 100.0
11 TraesCS2B01G432000 chr3B 96.610 59 2 0 2641 2699 672898367 672898309 6.150000e-17 99.0
12 TraesCS2B01G432000 chr4D 85.227 88 13 0 2607 2694 501505952 501505865 1.030000e-14 91.6
13 TraesCS2B01G432000 chr7D 85.000 80 12 0 2615 2694 412098752 412098673 6.190000e-12 82.4
14 TraesCS2B01G432000 chr7D 90.323 62 6 0 10 71 606437035 606436974 6.190000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G432000 chr2B 621179511 621182209 2698 True 4985 4985 100.000 1 2699 1 chr2B.!!$R2 2698
1 TraesCS2B01G432000 chr2D 526162225 526164568 2343 False 3544 3544 93.836 140 2515 1 chr2D.!!$F1 2375
2 TraesCS2B01G432000 chr2A 670640652 670642957 2305 True 3158 3158 91.628 219 2515 1 chr2A.!!$R1 2296

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 721 0.032615 AAACCAAGGCCAGACAACCA 60.033 50.0 5.01 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2640 2698 0.034896 ACTTCTACAAGGCCGTGGTG 59.965 55.0 23.09 14.24 33.37 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.881780 TTTTGACCGGACGTGTTTATG 57.118 42.857 9.46 0.00 0.00 1.90
33 34 2.816204 TTGACCGGACGTGTTTATGA 57.184 45.000 9.46 0.00 0.00 2.15
34 35 2.357327 TGACCGGACGTGTTTATGAG 57.643 50.000 9.46 0.00 0.00 2.90
35 36 1.067425 TGACCGGACGTGTTTATGAGG 60.067 52.381 9.46 0.00 0.00 3.86
36 37 1.203052 GACCGGACGTGTTTATGAGGA 59.797 52.381 9.46 0.00 0.00 3.71
37 38 1.829222 ACCGGACGTGTTTATGAGGAT 59.171 47.619 9.46 0.00 0.00 3.24
38 39 2.235402 ACCGGACGTGTTTATGAGGATT 59.765 45.455 9.46 0.00 0.00 3.01
39 40 2.607635 CCGGACGTGTTTATGAGGATTG 59.392 50.000 0.00 0.00 0.00 2.67
40 41 3.259064 CGGACGTGTTTATGAGGATTGT 58.741 45.455 0.00 0.00 0.00 2.71
41 42 4.426416 CGGACGTGTTTATGAGGATTGTA 58.574 43.478 0.00 0.00 0.00 2.41
42 43 4.865925 CGGACGTGTTTATGAGGATTGTAA 59.134 41.667 0.00 0.00 0.00 2.41
43 44 5.220340 CGGACGTGTTTATGAGGATTGTAAC 60.220 44.000 0.00 0.00 0.00 2.50
44 45 5.064325 GGACGTGTTTATGAGGATTGTAACC 59.936 44.000 0.00 0.00 0.00 2.85
45 46 4.939439 ACGTGTTTATGAGGATTGTAACCC 59.061 41.667 0.00 0.00 0.00 4.11
46 47 4.938832 CGTGTTTATGAGGATTGTAACCCA 59.061 41.667 0.00 0.00 0.00 4.51
47 48 5.413213 CGTGTTTATGAGGATTGTAACCCAA 59.587 40.000 0.00 0.00 37.49 4.12
48 49 6.094881 CGTGTTTATGAGGATTGTAACCCAAT 59.905 38.462 0.00 0.00 46.51 3.16
49 50 7.257722 GTGTTTATGAGGATTGTAACCCAATG 58.742 38.462 0.00 0.00 43.87 2.82
50 51 6.379703 TGTTTATGAGGATTGTAACCCAATGG 59.620 38.462 0.00 0.00 43.87 3.16
51 52 2.733956 TGAGGATTGTAACCCAATGGC 58.266 47.619 0.00 0.00 43.87 4.40
52 53 2.311542 TGAGGATTGTAACCCAATGGCT 59.688 45.455 0.00 0.00 43.87 4.75
53 54 3.245586 TGAGGATTGTAACCCAATGGCTT 60.246 43.478 0.00 0.00 43.87 4.35
54 55 3.099141 AGGATTGTAACCCAATGGCTTG 58.901 45.455 0.00 0.00 43.87 4.01
62 63 3.372557 CCAATGGCTTGGTGGGTAA 57.627 52.632 7.35 0.00 45.90 2.85
63 64 1.864669 CCAATGGCTTGGTGGGTAAT 58.135 50.000 7.35 0.00 45.90 1.89
64 65 2.187100 CCAATGGCTTGGTGGGTAATT 58.813 47.619 7.35 0.00 45.90 1.40
65 66 3.370104 CCAATGGCTTGGTGGGTAATTA 58.630 45.455 7.35 0.00 45.90 1.40
66 67 3.772025 CCAATGGCTTGGTGGGTAATTAA 59.228 43.478 7.35 0.00 45.90 1.40
67 68 4.223923 CCAATGGCTTGGTGGGTAATTAAA 59.776 41.667 7.35 0.00 45.90 1.52
68 69 5.104569 CCAATGGCTTGGTGGGTAATTAAAT 60.105 40.000 7.35 0.00 45.90 1.40
69 70 5.869649 ATGGCTTGGTGGGTAATTAAATC 57.130 39.130 0.00 0.00 0.00 2.17
70 71 4.678256 TGGCTTGGTGGGTAATTAAATCA 58.322 39.130 0.00 0.00 0.00 2.57
71 72 4.709397 TGGCTTGGTGGGTAATTAAATCAG 59.291 41.667 0.00 0.00 0.00 2.90
72 73 4.953579 GGCTTGGTGGGTAATTAAATCAGA 59.046 41.667 0.00 0.00 0.00 3.27
73 74 5.598417 GGCTTGGTGGGTAATTAAATCAGAT 59.402 40.000 0.00 0.00 0.00 2.90
74 75 6.098266 GGCTTGGTGGGTAATTAAATCAGATT 59.902 38.462 0.00 0.00 0.00 2.40
75 76 6.980397 GCTTGGTGGGTAATTAAATCAGATTG 59.020 38.462 0.00 0.00 0.00 2.67
76 77 6.463995 TGGTGGGTAATTAAATCAGATTGC 57.536 37.500 0.00 0.00 0.00 3.56
77 78 5.954752 TGGTGGGTAATTAAATCAGATTGCA 59.045 36.000 0.00 0.00 0.00 4.08
78 79 6.610830 TGGTGGGTAATTAAATCAGATTGCAT 59.389 34.615 0.00 0.00 0.00 3.96
79 80 6.925165 GGTGGGTAATTAAATCAGATTGCATG 59.075 38.462 0.00 0.00 0.00 4.06
80 81 7.417797 GGTGGGTAATTAAATCAGATTGCATGT 60.418 37.037 0.00 0.00 0.00 3.21
81 82 7.981225 GTGGGTAATTAAATCAGATTGCATGTT 59.019 33.333 0.00 0.00 0.00 2.71
82 83 8.538701 TGGGTAATTAAATCAGATTGCATGTTT 58.461 29.630 0.00 0.00 0.00 2.83
83 84 8.819974 GGGTAATTAAATCAGATTGCATGTTTG 58.180 33.333 0.00 0.00 0.00 2.93
84 85 9.585099 GGTAATTAAATCAGATTGCATGTTTGA 57.415 29.630 0.00 0.00 0.00 2.69
88 89 6.978343 AAATCAGATTGCATGTTTGAATGG 57.022 33.333 0.00 0.00 0.00 3.16
89 90 5.925506 ATCAGATTGCATGTTTGAATGGA 57.074 34.783 0.00 0.00 0.00 3.41
90 91 5.925506 TCAGATTGCATGTTTGAATGGAT 57.074 34.783 0.00 0.00 0.00 3.41
91 92 7.591421 ATCAGATTGCATGTTTGAATGGATA 57.409 32.000 0.00 0.00 0.00 2.59
92 93 7.591421 TCAGATTGCATGTTTGAATGGATAT 57.409 32.000 0.00 0.00 0.00 1.63
93 94 7.430441 TCAGATTGCATGTTTGAATGGATATG 58.570 34.615 0.00 0.00 0.00 1.78
94 95 7.285858 TCAGATTGCATGTTTGAATGGATATGA 59.714 33.333 0.00 0.00 0.00 2.15
95 96 7.923878 CAGATTGCATGTTTGAATGGATATGAA 59.076 33.333 0.00 0.00 0.00 2.57
96 97 8.141909 AGATTGCATGTTTGAATGGATATGAAG 58.858 33.333 0.00 0.00 0.00 3.02
97 98 7.407393 TTGCATGTTTGAATGGATATGAAGA 57.593 32.000 0.00 0.00 0.00 2.87
98 99 7.591421 TGCATGTTTGAATGGATATGAAGAT 57.409 32.000 0.00 0.00 0.00 2.40
99 100 8.014070 TGCATGTTTGAATGGATATGAAGATT 57.986 30.769 0.00 0.00 0.00 2.40
100 101 8.479689 TGCATGTTTGAATGGATATGAAGATTT 58.520 29.630 0.00 0.00 0.00 2.17
101 102 8.761497 GCATGTTTGAATGGATATGAAGATTTG 58.239 33.333 0.00 0.00 0.00 2.32
102 103 9.256477 CATGTTTGAATGGATATGAAGATTTGG 57.744 33.333 0.00 0.00 0.00 3.28
103 104 8.365060 TGTTTGAATGGATATGAAGATTTGGT 57.635 30.769 0.00 0.00 0.00 3.67
104 105 8.814931 TGTTTGAATGGATATGAAGATTTGGTT 58.185 29.630 0.00 0.00 0.00 3.67
105 106 9.305925 GTTTGAATGGATATGAAGATTTGGTTC 57.694 33.333 0.00 0.00 0.00 3.62
106 107 8.827832 TTGAATGGATATGAAGATTTGGTTCT 57.172 30.769 0.00 0.00 0.00 3.01
107 108 8.455903 TGAATGGATATGAAGATTTGGTTCTC 57.544 34.615 0.00 0.00 0.00 2.87
108 109 7.503566 TGAATGGATATGAAGATTTGGTTCTCC 59.496 37.037 0.00 0.00 0.00 3.71
109 110 6.325993 TGGATATGAAGATTTGGTTCTCCA 57.674 37.500 0.00 0.00 42.66 3.86
110 111 6.122277 TGGATATGAAGATTTGGTTCTCCAC 58.878 40.000 0.00 0.00 44.22 4.02
120 121 2.700722 GGTTCTCCACCATCTCTTCC 57.299 55.000 0.00 0.00 46.42 3.46
121 122 2.192263 GGTTCTCCACCATCTCTTCCT 58.808 52.381 0.00 0.00 46.42 3.36
122 123 2.573915 GGTTCTCCACCATCTCTTCCTT 59.426 50.000 0.00 0.00 46.42 3.36
123 124 3.009584 GGTTCTCCACCATCTCTTCCTTT 59.990 47.826 0.00 0.00 46.42 3.11
124 125 4.507512 GGTTCTCCACCATCTCTTCCTTTT 60.508 45.833 0.00 0.00 46.42 2.27
125 126 5.280521 GGTTCTCCACCATCTCTTCCTTTTA 60.281 44.000 0.00 0.00 46.42 1.52
126 127 5.422214 TCTCCACCATCTCTTCCTTTTAC 57.578 43.478 0.00 0.00 0.00 2.01
127 128 4.844085 TCTCCACCATCTCTTCCTTTTACA 59.156 41.667 0.00 0.00 0.00 2.41
128 129 5.046304 TCTCCACCATCTCTTCCTTTTACAG 60.046 44.000 0.00 0.00 0.00 2.74
129 130 4.019321 TCCACCATCTCTTCCTTTTACAGG 60.019 45.833 0.00 0.00 45.64 4.00
130 131 4.265073 CACCATCTCTTCCTTTTACAGGG 58.735 47.826 0.00 0.00 44.12 4.45
131 132 4.019321 CACCATCTCTTCCTTTTACAGGGA 60.019 45.833 0.00 0.00 44.12 4.20
132 133 4.790790 ACCATCTCTTCCTTTTACAGGGAT 59.209 41.667 0.00 0.00 44.12 3.85
133 134 5.970640 ACCATCTCTTCCTTTTACAGGGATA 59.029 40.000 0.00 0.00 44.12 2.59
134 135 6.100424 ACCATCTCTTCCTTTTACAGGGATAG 59.900 42.308 0.00 0.00 44.12 2.08
135 136 6.100424 CCATCTCTTCCTTTTACAGGGATAGT 59.900 42.308 0.00 0.00 44.12 2.12
136 137 7.290248 CCATCTCTTCCTTTTACAGGGATAGTA 59.710 40.741 0.00 0.00 44.12 1.82
137 138 7.899648 TCTCTTCCTTTTACAGGGATAGTAG 57.100 40.000 0.00 0.00 44.12 2.57
138 139 7.649715 TCTCTTCCTTTTACAGGGATAGTAGA 58.350 38.462 0.00 0.00 44.12 2.59
184 185 2.034066 ACACCCGAATGCCCACTG 59.966 61.111 0.00 0.00 0.00 3.66
185 186 2.034066 CACCCGAATGCCCACTGT 59.966 61.111 0.00 0.00 0.00 3.55
186 187 2.034066 ACCCGAATGCCCACTGTG 59.966 61.111 0.00 0.00 0.00 3.66
217 218 0.460284 CCTTTCCGCATGCGTAGAGT 60.460 55.000 35.55 0.00 37.81 3.24
223 224 1.478137 CGCATGCGTAGAGTACCTTC 58.522 55.000 31.33 0.00 34.35 3.46
279 282 8.746052 TTGGATTGGAGTTGACGAATTTATAT 57.254 30.769 0.00 0.00 0.00 0.86
325 328 4.630505 GTGGTTAAGAGCTGTTAGTTAGGC 59.369 45.833 3.29 0.00 0.00 3.93
354 357 2.282674 ACACTGTCTCCGGCGGTA 60.283 61.111 27.32 12.96 0.00 4.02
481 488 2.969238 GCCATCGAGACGCCCATG 60.969 66.667 0.00 0.00 0.00 3.66
513 520 3.982372 TAGCAGCACGTACGCAGGC 62.982 63.158 16.72 16.58 35.45 4.85
516 523 3.680786 AGCACGTACGCAGGCAGA 61.681 61.111 23.26 0.00 0.00 4.26
519 526 2.675423 ACGTACGCAGGCAGAGGA 60.675 61.111 16.72 0.00 0.00 3.71
520 527 2.103143 CGTACGCAGGCAGAGGAG 59.897 66.667 0.52 0.00 0.00 3.69
701 711 1.628846 TCAGACCCTCTAAACCAAGGC 59.371 52.381 0.00 0.00 0.00 4.35
702 712 0.992695 AGACCCTCTAAACCAAGGCC 59.007 55.000 0.00 0.00 0.00 5.19
703 713 0.696501 GACCCTCTAAACCAAGGCCA 59.303 55.000 5.01 0.00 0.00 5.36
704 714 0.698818 ACCCTCTAAACCAAGGCCAG 59.301 55.000 5.01 0.00 0.00 4.85
705 715 0.991920 CCCTCTAAACCAAGGCCAGA 59.008 55.000 5.01 0.00 0.00 3.86
706 716 1.340114 CCCTCTAAACCAAGGCCAGAC 60.340 57.143 5.01 0.00 0.00 3.51
707 717 1.351017 CCTCTAAACCAAGGCCAGACA 59.649 52.381 5.01 0.00 0.00 3.41
708 718 2.224769 CCTCTAAACCAAGGCCAGACAA 60.225 50.000 5.01 0.00 0.00 3.18
709 719 2.814336 CTCTAAACCAAGGCCAGACAAC 59.186 50.000 5.01 0.00 0.00 3.32
710 720 1.886542 CTAAACCAAGGCCAGACAACC 59.113 52.381 5.01 0.00 0.00 3.77
711 721 0.032615 AAACCAAGGCCAGACAACCA 60.033 50.000 5.01 0.00 0.00 3.67
712 722 0.032615 AACCAAGGCCAGACAACCAA 60.033 50.000 5.01 0.00 0.00 3.67
713 723 0.468029 ACCAAGGCCAGACAACCAAG 60.468 55.000 5.01 0.00 0.00 3.61
714 724 1.181098 CCAAGGCCAGACAACCAAGG 61.181 60.000 5.01 0.00 0.00 3.61
797 808 3.198872 TGTGATTATGTTAATGCCGCGA 58.801 40.909 8.23 0.00 0.00 5.87
798 809 3.001838 TGTGATTATGTTAATGCCGCGAC 59.998 43.478 8.23 0.00 0.00 5.19
883 895 2.688446 GCCCCCTCAAATGCTTAAGTAC 59.312 50.000 4.02 0.00 0.00 2.73
971 983 1.967779 TGTGTCCAAGATCCTCGTGAA 59.032 47.619 0.00 0.00 0.00 3.18
1140 1158 3.449227 ATCGCCCGCAACGAGAGA 61.449 61.111 0.00 0.00 43.74 3.10
1153 1171 4.722535 AGAGAGCCTTGGCCGGGA 62.723 66.667 17.45 0.00 0.00 5.14
1572 1590 3.724914 GAGCTACTGCCGGCACCTC 62.725 68.421 29.03 22.92 40.80 3.85
1620 1638 1.379977 CCAGGTCGAGAGGTGCCTA 60.380 63.158 0.00 0.00 0.00 3.93
1705 1723 0.674895 AGCAGCTCAGTAAAAGGCCG 60.675 55.000 0.00 0.00 0.00 6.13
1811 1829 1.550072 TCATGACAAGATCGAGTGCCA 59.450 47.619 0.00 0.00 0.00 4.92
2004 2037 6.748132 TGCTTTTTAGCAGCTAAACAGAATT 58.252 32.000 32.06 0.00 36.44 2.17
2010 2043 4.645535 AGCAGCTAAACAGAATTGACAGA 58.354 39.130 0.00 0.00 0.00 3.41
2148 2204 6.091169 GCAACAAATGATTCCATACCACTTTG 59.909 38.462 0.00 0.00 31.59 2.77
2369 2426 3.350163 CCCCATCAAGCCCCCACT 61.350 66.667 0.00 0.00 0.00 4.00
2371 2428 2.043652 CCATCAAGCCCCCACTGG 60.044 66.667 0.00 0.00 0.00 4.00
2397 2454 2.599659 GGAAAACGACTCGTATCCGTT 58.400 47.619 16.37 0.00 46.70 4.44
2490 2548 1.527611 CTGGTCCATCCATGCGCAT 60.528 57.895 19.28 19.28 46.12 4.73
2513 2571 1.919340 GCACACAGCGTTGCAAAAG 59.081 52.632 0.00 0.00 0.00 2.27
2514 2572 1.481819 GCACACAGCGTTGCAAAAGG 61.482 55.000 0.00 0.00 0.00 3.11
2515 2573 0.871163 CACACAGCGTTGCAAAAGGG 60.871 55.000 0.00 0.00 0.00 3.95
2516 2574 1.319614 ACACAGCGTTGCAAAAGGGT 61.320 50.000 0.00 0.00 0.00 4.34
2517 2575 0.179113 CACAGCGTTGCAAAAGGGTT 60.179 50.000 0.00 0.00 0.00 4.11
2518 2576 1.066303 CACAGCGTTGCAAAAGGGTTA 59.934 47.619 0.00 0.00 0.00 2.85
2519 2577 1.336755 ACAGCGTTGCAAAAGGGTTAG 59.663 47.619 0.00 0.00 0.00 2.34
2520 2578 0.958822 AGCGTTGCAAAAGGGTTAGG 59.041 50.000 0.00 0.00 0.00 2.69
2521 2579 0.666274 GCGTTGCAAAAGGGTTAGGC 60.666 55.000 0.00 0.00 0.00 3.93
2522 2580 0.038618 CGTTGCAAAAGGGTTAGGCC 60.039 55.000 0.00 0.00 0.00 5.19
2523 2581 1.044611 GTTGCAAAAGGGTTAGGCCA 58.955 50.000 5.01 0.00 39.65 5.36
2524 2582 1.414550 GTTGCAAAAGGGTTAGGCCAA 59.585 47.619 5.01 0.00 39.65 4.52
2525 2583 1.044611 TGCAAAAGGGTTAGGCCAAC 58.955 50.000 5.01 7.55 39.65 3.77
2526 2584 1.338107 GCAAAAGGGTTAGGCCAACT 58.662 50.000 5.01 0.00 39.65 3.16
2527 2585 1.272490 GCAAAAGGGTTAGGCCAACTC 59.728 52.381 5.01 7.72 37.96 3.01
2528 2586 1.893137 CAAAAGGGTTAGGCCAACTCC 59.107 52.381 5.01 10.71 38.52 3.85
2529 2587 1.154430 AAAGGGTTAGGCCAACTCCA 58.846 50.000 5.01 0.00 38.52 3.86
2530 2588 0.698818 AAGGGTTAGGCCAACTCCAG 59.301 55.000 5.01 0.00 38.52 3.86
2531 2589 0.178873 AGGGTTAGGCCAACTCCAGA 60.179 55.000 5.01 0.00 38.52 3.86
2532 2590 0.253327 GGGTTAGGCCAACTCCAGAG 59.747 60.000 5.01 0.00 39.65 3.35
2533 2591 0.393132 GGTTAGGCCAACTCCAGAGC 60.393 60.000 5.01 0.00 37.30 4.09
2534 2592 0.324943 GTTAGGCCAACTCCAGAGCA 59.675 55.000 5.01 0.00 34.06 4.26
2535 2593 0.324943 TTAGGCCAACTCCAGAGCAC 59.675 55.000 5.01 0.00 0.00 4.40
2536 2594 1.888436 TAGGCCAACTCCAGAGCACG 61.888 60.000 5.01 0.00 0.00 5.34
2537 2595 2.343758 GCCAACTCCAGAGCACGA 59.656 61.111 0.00 0.00 0.00 4.35
2538 2596 2.029844 GCCAACTCCAGAGCACGAC 61.030 63.158 0.00 0.00 0.00 4.34
2539 2597 1.374758 CCAACTCCAGAGCACGACC 60.375 63.158 0.00 0.00 0.00 4.79
2540 2598 1.374758 CAACTCCAGAGCACGACCC 60.375 63.158 0.00 0.00 0.00 4.46
2541 2599 1.534235 AACTCCAGAGCACGACCCT 60.534 57.895 0.00 0.00 0.00 4.34
2542 2600 0.251653 AACTCCAGAGCACGACCCTA 60.252 55.000 0.00 0.00 0.00 3.53
2543 2601 0.251653 ACTCCAGAGCACGACCCTAA 60.252 55.000 0.00 0.00 0.00 2.69
2544 2602 0.895530 CTCCAGAGCACGACCCTAAA 59.104 55.000 0.00 0.00 0.00 1.85
2545 2603 0.606604 TCCAGAGCACGACCCTAAAC 59.393 55.000 0.00 0.00 0.00 2.01
2546 2604 0.736325 CCAGAGCACGACCCTAAACG 60.736 60.000 0.00 0.00 0.00 3.60
2547 2605 0.736325 CAGAGCACGACCCTAAACGG 60.736 60.000 0.00 0.00 0.00 4.44
2548 2606 0.896940 AGAGCACGACCCTAAACGGA 60.897 55.000 0.00 0.00 33.16 4.69
2549 2607 0.735287 GAGCACGACCCTAAACGGAC 60.735 60.000 0.00 0.00 33.16 4.79
2550 2608 1.005867 GCACGACCCTAAACGGACA 60.006 57.895 0.00 0.00 33.16 4.02
2551 2609 0.390735 GCACGACCCTAAACGGACAT 60.391 55.000 0.00 0.00 33.16 3.06
2552 2610 1.636988 CACGACCCTAAACGGACATC 58.363 55.000 0.00 0.00 33.16 3.06
2553 2611 0.533951 ACGACCCTAAACGGACATCC 59.466 55.000 0.00 0.00 33.16 3.51
2572 2630 9.233232 GGACATCCGTTTAATTTGAAATATGTC 57.767 33.333 14.64 14.64 36.42 3.06
2573 2631 9.233232 GACATCCGTTTAATTTGAAATATGTCC 57.767 33.333 13.02 1.67 34.21 4.02
2574 2632 7.913297 ACATCCGTTTAATTTGAAATATGTCCG 59.087 33.333 0.00 0.00 0.00 4.79
2575 2633 7.380431 TCCGTTTAATTTGAAATATGTCCGT 57.620 32.000 0.00 0.00 0.00 4.69
2576 2634 7.818642 TCCGTTTAATTTGAAATATGTCCGTT 58.181 30.769 0.00 0.00 0.00 4.44
2577 2635 8.298140 TCCGTTTAATTTGAAATATGTCCGTTT 58.702 29.630 0.00 0.00 0.00 3.60
2578 2636 9.557338 CCGTTTAATTTGAAATATGTCCGTTTA 57.443 29.630 0.00 0.00 0.00 2.01
2585 2643 7.852971 TTGAAATATGTCCGTTTAAGTAGGG 57.147 36.000 0.00 0.00 0.00 3.53
2586 2644 6.949715 TGAAATATGTCCGTTTAAGTAGGGT 58.050 36.000 0.00 0.00 0.00 4.34
2587 2645 8.076910 TGAAATATGTCCGTTTAAGTAGGGTA 57.923 34.615 0.00 0.00 0.00 3.69
2588 2646 8.538701 TGAAATATGTCCGTTTAAGTAGGGTAA 58.461 33.333 0.00 0.00 0.00 2.85
2589 2647 9.551734 GAAATATGTCCGTTTAAGTAGGGTAAT 57.448 33.333 0.00 0.00 0.00 1.89
2592 2650 6.469782 TGTCCGTTTAAGTAGGGTAATAGG 57.530 41.667 0.00 0.00 0.00 2.57
2593 2651 5.363580 TGTCCGTTTAAGTAGGGTAATAGGG 59.636 44.000 0.00 0.00 0.00 3.53
2594 2652 5.363868 GTCCGTTTAAGTAGGGTAATAGGGT 59.636 44.000 0.00 0.00 0.00 4.34
2595 2653 5.598417 TCCGTTTAAGTAGGGTAATAGGGTC 59.402 44.000 0.00 0.00 0.00 4.46
2596 2654 5.507985 CCGTTTAAGTAGGGTAATAGGGTCG 60.508 48.000 0.00 0.00 0.00 4.79
2597 2655 5.067805 CGTTTAAGTAGGGTAATAGGGTCGT 59.932 44.000 0.00 0.00 0.00 4.34
2598 2656 6.276091 GTTTAAGTAGGGTAATAGGGTCGTG 58.724 44.000 0.00 0.00 0.00 4.35
2599 2657 3.677156 AGTAGGGTAATAGGGTCGTGT 57.323 47.619 0.00 0.00 0.00 4.49
2600 2658 3.560105 AGTAGGGTAATAGGGTCGTGTC 58.440 50.000 0.00 0.00 0.00 3.67
2601 2659 2.842645 AGGGTAATAGGGTCGTGTCT 57.157 50.000 0.00 0.00 0.00 3.41
2602 2660 2.385803 AGGGTAATAGGGTCGTGTCTG 58.614 52.381 0.00 0.00 0.00 3.51
2603 2661 1.411612 GGGTAATAGGGTCGTGTCTGG 59.588 57.143 0.00 0.00 0.00 3.86
2604 2662 2.381911 GGTAATAGGGTCGTGTCTGGA 58.618 52.381 0.00 0.00 0.00 3.86
2605 2663 2.963782 GGTAATAGGGTCGTGTCTGGAT 59.036 50.000 0.00 0.00 0.00 3.41
2606 2664 3.387050 GGTAATAGGGTCGTGTCTGGATT 59.613 47.826 0.00 0.00 0.00 3.01
2607 2665 4.141779 GGTAATAGGGTCGTGTCTGGATTT 60.142 45.833 0.00 0.00 0.00 2.17
2608 2666 3.543680 ATAGGGTCGTGTCTGGATTTG 57.456 47.619 0.00 0.00 0.00 2.32
2609 2667 1.348064 AGGGTCGTGTCTGGATTTGA 58.652 50.000 0.00 0.00 0.00 2.69
2610 2668 1.002087 AGGGTCGTGTCTGGATTTGAC 59.998 52.381 0.00 0.00 35.21 3.18
2611 2669 1.002087 GGGTCGTGTCTGGATTTGACT 59.998 52.381 0.00 0.00 35.63 3.41
2612 2670 2.069273 GGTCGTGTCTGGATTTGACTG 58.931 52.381 0.00 0.00 35.63 3.51
2613 2671 1.461127 GTCGTGTCTGGATTTGACTGC 59.539 52.381 0.00 0.00 35.63 4.40
2614 2672 0.798776 CGTGTCTGGATTTGACTGCC 59.201 55.000 0.00 0.00 35.63 4.85
2615 2673 1.609061 CGTGTCTGGATTTGACTGCCT 60.609 52.381 0.00 0.00 35.63 4.75
2616 2674 2.079925 GTGTCTGGATTTGACTGCCTC 58.920 52.381 0.00 0.00 35.63 4.70
2617 2675 1.699083 TGTCTGGATTTGACTGCCTCA 59.301 47.619 0.00 0.00 35.63 3.86
2618 2676 2.106338 TGTCTGGATTTGACTGCCTCAA 59.894 45.455 0.00 0.00 37.08 3.02
2619 2677 2.746362 GTCTGGATTTGACTGCCTCAAG 59.254 50.000 0.00 0.00 40.12 3.02
2620 2678 2.373169 TCTGGATTTGACTGCCTCAAGT 59.627 45.455 0.00 0.00 40.12 3.16
2621 2679 3.582647 TCTGGATTTGACTGCCTCAAGTA 59.417 43.478 0.00 0.00 40.12 2.24
2622 2680 3.674997 TGGATTTGACTGCCTCAAGTAC 58.325 45.455 0.00 0.00 40.12 2.73
2623 2681 3.327757 TGGATTTGACTGCCTCAAGTACT 59.672 43.478 0.00 0.00 40.12 2.73
2624 2682 3.935828 GGATTTGACTGCCTCAAGTACTC 59.064 47.826 0.00 0.00 40.12 2.59
2625 2683 4.563580 GGATTTGACTGCCTCAAGTACTCA 60.564 45.833 0.00 0.00 40.12 3.41
2626 2684 3.667497 TTGACTGCCTCAAGTACTCAG 57.333 47.619 0.00 1.03 33.65 3.35
2627 2685 1.895798 TGACTGCCTCAAGTACTCAGG 59.104 52.381 14.21 14.21 0.00 3.86
2628 2686 1.205893 GACTGCCTCAAGTACTCAGGG 59.794 57.143 18.36 11.59 0.00 4.45
2629 2687 1.270907 CTGCCTCAAGTACTCAGGGT 58.729 55.000 18.36 0.00 0.00 4.34
2630 2688 1.205893 CTGCCTCAAGTACTCAGGGTC 59.794 57.143 18.36 7.06 0.00 4.46
2631 2689 1.267121 GCCTCAAGTACTCAGGGTCA 58.733 55.000 18.36 0.00 0.00 4.02
2632 2690 1.623811 GCCTCAAGTACTCAGGGTCAA 59.376 52.381 18.36 0.00 0.00 3.18
2633 2691 2.038557 GCCTCAAGTACTCAGGGTCAAA 59.961 50.000 18.36 0.00 0.00 2.69
2634 2692 3.665190 CCTCAAGTACTCAGGGTCAAAC 58.335 50.000 11.58 0.00 0.00 2.93
2635 2693 3.071023 CCTCAAGTACTCAGGGTCAAACA 59.929 47.826 11.58 0.00 0.00 2.83
2636 2694 4.058817 CTCAAGTACTCAGGGTCAAACAC 58.941 47.826 0.00 0.00 0.00 3.32
2637 2695 3.709653 TCAAGTACTCAGGGTCAAACACT 59.290 43.478 0.00 0.00 26.76 3.55
2641 2699 4.577152 CAGGGTCAAACACTGCCA 57.423 55.556 0.00 0.00 43.40 4.92
2642 2700 2.032981 CAGGGTCAAACACTGCCAC 58.967 57.895 0.00 0.00 43.40 5.01
2643 2701 1.152756 AGGGTCAAACACTGCCACC 60.153 57.895 0.00 0.00 25.25 4.61
2644 2702 1.454847 GGGTCAAACACTGCCACCA 60.455 57.895 0.00 0.00 0.00 4.17
2645 2703 1.733526 GGTCAAACACTGCCACCAC 59.266 57.895 0.00 0.00 0.00 4.16
2646 2704 1.355210 GTCAAACACTGCCACCACG 59.645 57.895 0.00 0.00 0.00 4.94
2647 2705 1.821759 TCAAACACTGCCACCACGG 60.822 57.895 0.00 0.00 38.11 4.94
2656 2714 3.065306 CCACCACGGCCTTGTAGA 58.935 61.111 8.63 0.00 0.00 2.59
2657 2715 1.373435 CCACCACGGCCTTGTAGAA 59.627 57.895 8.63 0.00 0.00 2.10
2658 2716 0.673644 CCACCACGGCCTTGTAGAAG 60.674 60.000 8.63 0.00 0.00 2.85
2659 2717 0.034896 CACCACGGCCTTGTAGAAGT 59.965 55.000 8.63 0.00 0.00 3.01
2660 2718 0.763035 ACCACGGCCTTGTAGAAGTT 59.237 50.000 8.63 0.00 0.00 2.66
2661 2719 1.156736 CCACGGCCTTGTAGAAGTTG 58.843 55.000 8.63 0.00 0.00 3.16
2662 2720 1.542547 CCACGGCCTTGTAGAAGTTGT 60.543 52.381 8.63 0.00 0.00 3.32
2663 2721 2.289195 CCACGGCCTTGTAGAAGTTGTA 60.289 50.000 8.63 0.00 0.00 2.41
2664 2722 2.735134 CACGGCCTTGTAGAAGTTGTAC 59.265 50.000 0.00 3.26 0.00 2.90
2665 2723 2.366266 ACGGCCTTGTAGAAGTTGTACA 59.634 45.455 8.71 8.71 0.00 2.90
2666 2724 2.993899 CGGCCTTGTAGAAGTTGTACAG 59.006 50.000 12.16 4.43 32.08 2.74
2667 2725 3.554337 CGGCCTTGTAGAAGTTGTACAGT 60.554 47.826 12.16 0.00 32.08 3.55
2668 2726 4.386711 GGCCTTGTAGAAGTTGTACAGTT 58.613 43.478 12.16 0.00 32.08 3.16
2669 2727 5.544650 GGCCTTGTAGAAGTTGTACAGTTA 58.455 41.667 12.16 0.00 32.08 2.24
2670 2728 5.407691 GGCCTTGTAGAAGTTGTACAGTTAC 59.592 44.000 12.16 4.98 32.08 2.50
2671 2729 5.987347 GCCTTGTAGAAGTTGTACAGTTACA 59.013 40.000 12.16 0.00 36.36 2.41
2672 2730 6.145696 GCCTTGTAGAAGTTGTACAGTTACAG 59.854 42.308 12.16 7.24 39.44 2.74
2673 2731 6.145696 CCTTGTAGAAGTTGTACAGTTACAGC 59.854 42.308 12.16 0.00 39.44 4.40
2674 2732 6.151663 TGTAGAAGTTGTACAGTTACAGCA 57.848 37.500 8.71 0.00 40.84 4.41
2675 2733 6.213677 TGTAGAAGTTGTACAGTTACAGCAG 58.786 40.000 8.71 0.00 40.84 4.24
2676 2734 5.531122 AGAAGTTGTACAGTTACAGCAGA 57.469 39.130 0.00 0.00 40.84 4.26
2677 2735 5.290386 AGAAGTTGTACAGTTACAGCAGAC 58.710 41.667 0.00 0.00 40.84 3.51
2678 2736 4.665833 AGTTGTACAGTTACAGCAGACA 57.334 40.909 0.00 0.00 40.84 3.41
2679 2737 5.215252 AGTTGTACAGTTACAGCAGACAT 57.785 39.130 0.00 0.00 40.84 3.06
2680 2738 4.991056 AGTTGTACAGTTACAGCAGACATG 59.009 41.667 0.00 0.00 40.84 3.21
2681 2739 4.600692 TGTACAGTTACAGCAGACATGT 57.399 40.909 0.00 0.00 32.98 3.21
2682 2740 4.556233 TGTACAGTTACAGCAGACATGTC 58.444 43.478 18.47 18.47 32.98 3.06
2683 2741 2.677199 ACAGTTACAGCAGACATGTCG 58.323 47.619 19.85 15.27 32.02 4.35
2684 2742 2.296190 ACAGTTACAGCAGACATGTCGA 59.704 45.455 19.85 0.37 32.02 4.20
2685 2743 2.663602 CAGTTACAGCAGACATGTCGAC 59.336 50.000 19.85 15.47 32.02 4.20
2686 2744 2.558795 AGTTACAGCAGACATGTCGACT 59.441 45.455 19.85 17.40 32.02 4.18
2687 2745 2.917971 GTTACAGCAGACATGTCGACTC 59.082 50.000 19.85 6.13 32.02 3.36
2688 2746 0.961753 ACAGCAGACATGTCGACTCA 59.038 50.000 19.85 0.00 34.09 3.41
2689 2747 1.336332 ACAGCAGACATGTCGACTCAC 60.336 52.381 19.85 7.33 34.09 3.51
2690 2748 1.067985 CAGCAGACATGTCGACTCACT 60.068 52.381 19.85 9.35 34.09 3.41
2691 2749 1.201181 AGCAGACATGTCGACTCACTC 59.799 52.381 19.85 6.10 34.09 3.51
2692 2750 1.068264 GCAGACATGTCGACTCACTCA 60.068 52.381 19.85 0.00 34.09 3.41
2693 2751 2.416566 GCAGACATGTCGACTCACTCAT 60.417 50.000 19.85 0.00 34.09 2.90
2694 2752 3.177487 CAGACATGTCGACTCACTCATG 58.823 50.000 19.85 12.93 42.00 3.07
2695 2753 1.923204 GACATGTCGACTCACTCATGC 59.077 52.381 17.92 4.07 40.57 4.06
2696 2754 1.284657 CATGTCGACTCACTCATGCC 58.715 55.000 17.92 0.00 32.83 4.40
2697 2755 0.176680 ATGTCGACTCACTCATGCCC 59.823 55.000 17.92 0.00 0.00 5.36
2698 2756 1.184970 TGTCGACTCACTCATGCCCA 61.185 55.000 17.92 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.875727 TCATAAACACGTCCGGTCAAAAA 59.124 39.130 0.00 0.00 0.00 1.94
12 13 3.464907 TCATAAACACGTCCGGTCAAAA 58.535 40.909 0.00 0.00 0.00 2.44
13 14 3.061322 CTCATAAACACGTCCGGTCAAA 58.939 45.455 0.00 0.00 0.00 2.69
14 15 2.610976 CCTCATAAACACGTCCGGTCAA 60.611 50.000 0.00 0.00 0.00 3.18
15 16 1.067425 CCTCATAAACACGTCCGGTCA 60.067 52.381 0.00 0.00 0.00 4.02
16 17 1.203052 TCCTCATAAACACGTCCGGTC 59.797 52.381 0.00 0.00 0.00 4.79
17 18 1.259609 TCCTCATAAACACGTCCGGT 58.740 50.000 0.00 0.00 0.00 5.28
18 19 2.596904 ATCCTCATAAACACGTCCGG 57.403 50.000 0.00 0.00 0.00 5.14
19 20 3.259064 ACAATCCTCATAAACACGTCCG 58.741 45.455 0.00 0.00 0.00 4.79
20 21 5.064325 GGTTACAATCCTCATAAACACGTCC 59.936 44.000 0.00 0.00 0.00 4.79
21 22 5.064325 GGGTTACAATCCTCATAAACACGTC 59.936 44.000 0.00 0.00 0.00 4.34
22 23 4.939439 GGGTTACAATCCTCATAAACACGT 59.061 41.667 0.00 0.00 0.00 4.49
23 24 4.938832 TGGGTTACAATCCTCATAAACACG 59.061 41.667 0.00 0.00 0.00 4.49
24 25 6.827586 TTGGGTTACAATCCTCATAAACAC 57.172 37.500 0.00 0.00 33.18 3.32
25 26 6.379703 CCATTGGGTTACAATCCTCATAAACA 59.620 38.462 0.00 0.00 46.67 2.83
26 27 6.682861 GCCATTGGGTTACAATCCTCATAAAC 60.683 42.308 4.53 0.00 46.67 2.01
27 28 5.362430 GCCATTGGGTTACAATCCTCATAAA 59.638 40.000 4.53 0.00 46.67 1.40
28 29 4.892934 GCCATTGGGTTACAATCCTCATAA 59.107 41.667 4.53 0.00 46.67 1.90
29 30 4.167892 AGCCATTGGGTTACAATCCTCATA 59.832 41.667 0.36 0.00 46.67 2.15
30 31 3.052642 AGCCATTGGGTTACAATCCTCAT 60.053 43.478 0.36 0.00 46.67 2.90
31 32 2.311542 AGCCATTGGGTTACAATCCTCA 59.688 45.455 0.36 0.00 46.67 3.86
32 33 3.018423 AGCCATTGGGTTACAATCCTC 57.982 47.619 0.36 0.00 46.67 3.71
33 34 3.099141 CAAGCCATTGGGTTACAATCCT 58.901 45.455 19.19 0.00 46.67 3.24
34 35 3.525268 CAAGCCATTGGGTTACAATCC 57.475 47.619 19.19 0.00 46.67 3.01
45 46 5.413309 TTTAATTACCCACCAAGCCATTG 57.587 39.130 0.00 0.00 36.09 2.82
46 47 5.723887 TGATTTAATTACCCACCAAGCCATT 59.276 36.000 0.00 0.00 0.00 3.16
47 48 5.276440 TGATTTAATTACCCACCAAGCCAT 58.724 37.500 0.00 0.00 0.00 4.40
48 49 4.678256 TGATTTAATTACCCACCAAGCCA 58.322 39.130 0.00 0.00 0.00 4.75
49 50 4.953579 TCTGATTTAATTACCCACCAAGCC 59.046 41.667 0.00 0.00 0.00 4.35
50 51 6.715347 ATCTGATTTAATTACCCACCAAGC 57.285 37.500 0.00 0.00 0.00 4.01
51 52 6.980397 GCAATCTGATTTAATTACCCACCAAG 59.020 38.462 0.00 0.00 0.00 3.61
52 53 6.438741 TGCAATCTGATTTAATTACCCACCAA 59.561 34.615 0.00 0.00 0.00 3.67
53 54 5.954752 TGCAATCTGATTTAATTACCCACCA 59.045 36.000 0.00 0.00 0.00 4.17
54 55 6.463995 TGCAATCTGATTTAATTACCCACC 57.536 37.500 0.00 0.00 0.00 4.61
55 56 7.491682 ACATGCAATCTGATTTAATTACCCAC 58.508 34.615 0.00 0.00 0.00 4.61
56 57 7.658525 ACATGCAATCTGATTTAATTACCCA 57.341 32.000 0.00 0.00 0.00 4.51
57 58 8.819974 CAAACATGCAATCTGATTTAATTACCC 58.180 33.333 0.00 0.00 0.00 3.69
58 59 9.585099 TCAAACATGCAATCTGATTTAATTACC 57.415 29.630 0.00 0.00 0.00 2.85
62 63 9.104965 CCATTCAAACATGCAATCTGATTTAAT 57.895 29.630 0.00 0.00 0.00 1.40
63 64 8.312564 TCCATTCAAACATGCAATCTGATTTAA 58.687 29.630 0.00 0.00 0.00 1.52
64 65 7.838884 TCCATTCAAACATGCAATCTGATTTA 58.161 30.769 0.00 0.00 0.00 1.40
65 66 6.703319 TCCATTCAAACATGCAATCTGATTT 58.297 32.000 0.00 0.00 0.00 2.17
66 67 6.288941 TCCATTCAAACATGCAATCTGATT 57.711 33.333 0.00 0.00 0.00 2.57
67 68 5.925506 TCCATTCAAACATGCAATCTGAT 57.074 34.783 0.00 0.00 0.00 2.90
68 69 5.925506 ATCCATTCAAACATGCAATCTGA 57.074 34.783 0.00 0.00 0.00 3.27
69 70 7.430441 TCATATCCATTCAAACATGCAATCTG 58.570 34.615 0.00 0.00 0.00 2.90
70 71 7.591421 TCATATCCATTCAAACATGCAATCT 57.409 32.000 0.00 0.00 0.00 2.40
71 72 8.139350 TCTTCATATCCATTCAAACATGCAATC 58.861 33.333 0.00 0.00 0.00 2.67
72 73 8.014070 TCTTCATATCCATTCAAACATGCAAT 57.986 30.769 0.00 0.00 0.00 3.56
73 74 7.407393 TCTTCATATCCATTCAAACATGCAA 57.593 32.000 0.00 0.00 0.00 4.08
74 75 7.591421 ATCTTCATATCCATTCAAACATGCA 57.409 32.000 0.00 0.00 0.00 3.96
75 76 8.761497 CAAATCTTCATATCCATTCAAACATGC 58.239 33.333 0.00 0.00 0.00 4.06
76 77 9.256477 CCAAATCTTCATATCCATTCAAACATG 57.744 33.333 0.00 0.00 0.00 3.21
77 78 8.984855 ACCAAATCTTCATATCCATTCAAACAT 58.015 29.630 0.00 0.00 0.00 2.71
78 79 8.365060 ACCAAATCTTCATATCCATTCAAACA 57.635 30.769 0.00 0.00 0.00 2.83
79 80 9.305925 GAACCAAATCTTCATATCCATTCAAAC 57.694 33.333 0.00 0.00 0.00 2.93
80 81 9.258629 AGAACCAAATCTTCATATCCATTCAAA 57.741 29.630 0.00 0.00 0.00 2.69
81 82 8.827832 AGAACCAAATCTTCATATCCATTCAA 57.172 30.769 0.00 0.00 0.00 2.69
82 83 7.503566 GGAGAACCAAATCTTCATATCCATTCA 59.496 37.037 0.00 0.00 35.97 2.57
83 84 7.503566 TGGAGAACCAAATCTTCATATCCATTC 59.496 37.037 0.00 0.00 43.91 2.67
84 85 7.356680 TGGAGAACCAAATCTTCATATCCATT 58.643 34.615 0.00 0.00 43.91 3.16
85 86 6.914665 TGGAGAACCAAATCTTCATATCCAT 58.085 36.000 0.00 0.00 43.91 3.41
86 87 6.325993 TGGAGAACCAAATCTTCATATCCA 57.674 37.500 0.00 0.00 43.91 3.41
102 103 3.990959 AAGGAAGAGATGGTGGAGAAC 57.009 47.619 0.00 0.00 0.00 3.01
103 104 5.309543 TGTAAAAGGAAGAGATGGTGGAGAA 59.690 40.000 0.00 0.00 0.00 2.87
104 105 4.844085 TGTAAAAGGAAGAGATGGTGGAGA 59.156 41.667 0.00 0.00 0.00 3.71
105 106 5.165961 TGTAAAAGGAAGAGATGGTGGAG 57.834 43.478 0.00 0.00 0.00 3.86
106 107 5.165961 CTGTAAAAGGAAGAGATGGTGGA 57.834 43.478 0.00 0.00 0.00 4.02
119 120 9.277783 CAATTCATCTACTATCCCTGTAAAAGG 57.722 37.037 0.00 0.00 46.94 3.11
120 121 8.778358 GCAATTCATCTACTATCCCTGTAAAAG 58.222 37.037 0.00 0.00 0.00 2.27
121 122 7.719633 GGCAATTCATCTACTATCCCTGTAAAA 59.280 37.037 0.00 0.00 0.00 1.52
122 123 7.224297 GGCAATTCATCTACTATCCCTGTAAA 58.776 38.462 0.00 0.00 0.00 2.01
123 124 6.239887 GGGCAATTCATCTACTATCCCTGTAA 60.240 42.308 0.00 0.00 0.00 2.41
124 125 5.248477 GGGCAATTCATCTACTATCCCTGTA 59.752 44.000 0.00 0.00 0.00 2.74
125 126 4.042187 GGGCAATTCATCTACTATCCCTGT 59.958 45.833 0.00 0.00 0.00 4.00
126 127 4.583871 GGGCAATTCATCTACTATCCCTG 58.416 47.826 0.00 0.00 0.00 4.45
127 128 3.261897 CGGGCAATTCATCTACTATCCCT 59.738 47.826 0.00 0.00 0.00 4.20
128 129 3.260884 TCGGGCAATTCATCTACTATCCC 59.739 47.826 0.00 0.00 0.00 3.85
129 130 4.537135 TCGGGCAATTCATCTACTATCC 57.463 45.455 0.00 0.00 0.00 2.59
130 131 5.635700 GTCTTCGGGCAATTCATCTACTATC 59.364 44.000 0.00 0.00 0.00 2.08
131 132 5.511545 GGTCTTCGGGCAATTCATCTACTAT 60.512 44.000 0.00 0.00 0.00 2.12
132 133 4.202223 GGTCTTCGGGCAATTCATCTACTA 60.202 45.833 0.00 0.00 0.00 1.82
133 134 3.432326 GGTCTTCGGGCAATTCATCTACT 60.432 47.826 0.00 0.00 0.00 2.57
134 135 2.872858 GGTCTTCGGGCAATTCATCTAC 59.127 50.000 0.00 0.00 0.00 2.59
135 136 2.483013 CGGTCTTCGGGCAATTCATCTA 60.483 50.000 0.00 0.00 34.75 1.98
136 137 1.743772 CGGTCTTCGGGCAATTCATCT 60.744 52.381 0.00 0.00 34.75 2.90
137 138 0.657840 CGGTCTTCGGGCAATTCATC 59.342 55.000 0.00 0.00 34.75 2.92
138 139 0.251916 TCGGTCTTCGGGCAATTCAT 59.748 50.000 0.00 0.00 39.77 2.57
184 185 1.534163 GGAAAGGTCGTAACTTGCCAC 59.466 52.381 5.14 0.00 42.32 5.01
185 186 1.874739 CGGAAAGGTCGTAACTTGCCA 60.875 52.381 9.50 0.00 42.81 4.92
186 187 0.794473 CGGAAAGGTCGTAACTTGCC 59.206 55.000 0.77 0.77 39.82 4.52
217 218 0.978151 TAAACAGCAGCGGGAAGGTA 59.022 50.000 0.00 0.00 0.00 3.08
223 224 1.718757 GCCAGATAAACAGCAGCGGG 61.719 60.000 0.00 0.00 0.00 6.13
250 251 7.461182 AATTCGTCAACTCCAATCCAAATTA 57.539 32.000 0.00 0.00 0.00 1.40
279 282 7.016466 CACTTGGTCGCACGTTTTTATATTTA 58.984 34.615 0.00 0.00 0.00 1.40
354 357 1.065358 CGGTTAAGACGTCGCAATGT 58.935 50.000 10.46 0.00 0.00 2.71
481 488 1.003355 TGCTACCTGCTGTTCTGGC 60.003 57.895 0.00 0.00 43.37 4.85
513 520 3.909732 ACTATTCCTGACCTCTCCTCTG 58.090 50.000 0.00 0.00 0.00 3.35
516 523 5.604650 CCATTAACTATTCCTGACCTCTCCT 59.395 44.000 0.00 0.00 0.00 3.69
519 526 4.103311 GGCCATTAACTATTCCTGACCTCT 59.897 45.833 0.00 0.00 0.00 3.69
520 527 4.390264 GGCCATTAACTATTCCTGACCTC 58.610 47.826 0.00 0.00 0.00 3.85
701 711 1.070134 TCTTCGACCTTGGTTGTCTGG 59.930 52.381 6.90 0.00 0.00 3.86
702 712 2.526304 TCTTCGACCTTGGTTGTCTG 57.474 50.000 6.90 0.30 0.00 3.51
703 713 2.224305 CCTTCTTCGACCTTGGTTGTCT 60.224 50.000 6.90 0.00 0.00 3.41
704 714 2.143925 CCTTCTTCGACCTTGGTTGTC 58.856 52.381 6.90 0.00 0.00 3.18
705 715 1.489230 ACCTTCTTCGACCTTGGTTGT 59.511 47.619 6.90 0.00 0.00 3.32
706 716 1.873591 CACCTTCTTCGACCTTGGTTG 59.126 52.381 0.61 0.61 0.00 3.77
707 717 1.814248 GCACCTTCTTCGACCTTGGTT 60.814 52.381 0.00 0.00 0.00 3.67
708 718 0.250338 GCACCTTCTTCGACCTTGGT 60.250 55.000 0.00 0.00 0.00 3.67
709 719 1.291877 CGCACCTTCTTCGACCTTGG 61.292 60.000 0.00 0.00 0.00 3.61
710 720 0.600255 ACGCACCTTCTTCGACCTTG 60.600 55.000 0.00 0.00 0.00 3.61
711 721 0.600255 CACGCACCTTCTTCGACCTT 60.600 55.000 0.00 0.00 0.00 3.50
712 722 1.006102 CACGCACCTTCTTCGACCT 60.006 57.895 0.00 0.00 0.00 3.85
713 723 0.599204 TTCACGCACCTTCTTCGACC 60.599 55.000 0.00 0.00 0.00 4.79
714 724 0.784778 CTTCACGCACCTTCTTCGAC 59.215 55.000 0.00 0.00 0.00 4.20
943 955 1.197721 GATCTTGGACACACGCAAAGG 59.802 52.381 0.00 0.00 0.00 3.11
971 983 1.002087 GAATTCTCTGGTGGTCACGGT 59.998 52.381 0.00 0.00 0.00 4.83
1128 1146 2.097038 CAAGGCTCTCTCGTTGCGG 61.097 63.158 0.00 0.00 0.00 5.69
1240 1258 2.266055 CTCCAGGAACTCCCGCAC 59.734 66.667 0.00 0.00 40.87 5.34
1278 1296 3.299977 TACACCTGCGGCGACACT 61.300 61.111 12.98 0.00 0.00 3.55
1705 1723 4.980805 TGCGTCCAGGTTGGCGAC 62.981 66.667 13.42 0.00 38.63 5.19
1756 1774 4.862092 CGATGAGCTCGTGCGGCT 62.862 66.667 14.59 7.15 45.42 5.52
1793 1811 2.027745 ACTTGGCACTCGATCTTGTCAT 60.028 45.455 0.00 0.00 0.00 3.06
1898 1925 4.086199 TCGCATCGGTTTATTTTCCAAC 57.914 40.909 0.00 0.00 0.00 3.77
1907 1934 5.300034 TCTTACTAATCCTCGCATCGGTTTA 59.700 40.000 0.00 0.00 0.00 2.01
1908 1936 2.981859 ACTAATCCTCGCATCGGTTT 57.018 45.000 0.00 0.00 0.00 3.27
1944 1972 1.330829 GCCCGCATAAGCAGAGTAAAC 59.669 52.381 0.00 0.00 42.27 2.01
1951 1984 0.248743 CATTGTGCCCGCATAAGCAG 60.249 55.000 5.13 0.00 40.28 4.24
2004 2037 0.813821 CGATCTGCCAGTCTCTGTCA 59.186 55.000 0.00 0.00 0.00 3.58
2010 2043 1.102154 CTCACTCGATCTGCCAGTCT 58.898 55.000 0.00 0.00 0.00 3.24
2056 2112 8.000709 TGTCCCCTTCTCTTTATTCTACGTATA 58.999 37.037 0.00 0.00 0.00 1.47
2057 2113 6.837568 TGTCCCCTTCTCTTTATTCTACGTAT 59.162 38.462 0.00 0.00 0.00 3.06
2091 2147 1.526917 GATCATGGGCCGGGAGTTG 60.527 63.158 2.18 0.00 0.00 3.16
2167 2223 3.179795 CGTTCGGCATTGATACGTTCTAG 59.820 47.826 0.00 0.00 0.00 2.43
2168 2224 3.110358 CGTTCGGCATTGATACGTTCTA 58.890 45.455 0.00 0.00 0.00 2.10
2169 2225 1.924524 CGTTCGGCATTGATACGTTCT 59.075 47.619 0.00 0.00 0.00 3.01
2180 2236 2.355986 TGGAGGCTACGTTCGGCAT 61.356 57.895 12.39 4.61 0.00 4.40
2311 2368 3.360340 GCTGTCCTGTGCTGTGCC 61.360 66.667 0.00 0.00 0.00 5.01
2315 2372 1.303799 GGATGTGCTGTCCTGTGCTG 61.304 60.000 0.00 0.00 32.85 4.41
2316 2373 1.002868 GGATGTGCTGTCCTGTGCT 60.003 57.895 0.00 0.00 32.85 4.40
2317 2374 2.042831 GGGATGTGCTGTCCTGTGC 61.043 63.158 3.28 0.00 36.00 4.57
2318 2375 1.377725 GGGGATGTGCTGTCCTGTG 60.378 63.158 3.28 0.00 36.00 3.66
2319 2376 2.959484 CGGGGATGTGCTGTCCTGT 61.959 63.158 3.28 0.00 36.00 4.00
2320 2377 2.124983 CGGGGATGTGCTGTCCTG 60.125 66.667 3.28 0.00 36.00 3.86
2321 2378 3.402681 CCGGGGATGTGCTGTCCT 61.403 66.667 0.00 0.00 36.00 3.85
2323 2380 4.408821 TGCCGGGGATGTGCTGTC 62.409 66.667 2.18 0.00 0.00 3.51
2324 2381 4.722700 GTGCCGGGGATGTGCTGT 62.723 66.667 2.18 0.00 0.00 4.40
2345 2402 2.409870 GGCTTGATGGGGTTGCTCG 61.410 63.158 0.00 0.00 0.00 5.03
2369 2426 1.135315 CGAGTCGTTTTCCGTATCCCA 60.135 52.381 3.82 0.00 37.94 4.37
2371 2428 2.268730 ACGAGTCGTTTTCCGTATCC 57.731 50.000 13.56 0.00 36.35 2.59
2397 2454 3.978672 ATCAGGATCTGATCCACCAATGA 59.021 43.478 32.30 26.22 46.83 2.57
2453 2510 1.729838 GTCACACGACTCACGAGGC 60.730 63.158 0.00 0.00 45.77 4.70
2464 2521 1.079127 GGATGGACCAGGTCACACG 60.079 63.158 21.75 0.00 38.79 4.49
2465 2522 2.066340 TGGATGGACCAGGTCACAC 58.934 57.895 21.75 10.69 44.64 3.82
2504 2562 1.044611 TGGCCTAACCCTTTTGCAAC 58.955 50.000 3.32 0.00 37.83 4.17
2505 2563 1.414550 GTTGGCCTAACCCTTTTGCAA 59.585 47.619 3.32 0.00 37.83 4.08
2506 2564 1.044611 GTTGGCCTAACCCTTTTGCA 58.955 50.000 3.32 0.00 37.83 4.08
2507 2565 1.272490 GAGTTGGCCTAACCCTTTTGC 59.728 52.381 3.32 0.00 40.24 3.68
2508 2566 1.893137 GGAGTTGGCCTAACCCTTTTG 59.107 52.381 3.32 0.00 40.24 2.44
2509 2567 1.501604 TGGAGTTGGCCTAACCCTTTT 59.498 47.619 3.32 0.00 40.24 2.27
2510 2568 1.075536 CTGGAGTTGGCCTAACCCTTT 59.924 52.381 3.32 0.00 40.24 3.11
2511 2569 0.698818 CTGGAGTTGGCCTAACCCTT 59.301 55.000 3.32 0.00 40.24 3.95
2513 2571 0.253327 CTCTGGAGTTGGCCTAACCC 59.747 60.000 3.32 10.60 40.24 4.11
2514 2572 0.393132 GCTCTGGAGTTGGCCTAACC 60.393 60.000 3.32 4.44 40.24 2.85
2515 2573 0.324943 TGCTCTGGAGTTGGCCTAAC 59.675 55.000 3.32 7.14 39.65 2.34
2516 2574 0.324943 GTGCTCTGGAGTTGGCCTAA 59.675 55.000 3.32 0.00 0.00 2.69
2517 2575 1.888436 CGTGCTCTGGAGTTGGCCTA 61.888 60.000 3.32 0.00 0.00 3.93
2518 2576 2.753029 GTGCTCTGGAGTTGGCCT 59.247 61.111 3.32 0.00 0.00 5.19
2519 2577 2.743928 CGTGCTCTGGAGTTGGCC 60.744 66.667 0.00 0.00 0.00 5.36
2520 2578 2.029844 GTCGTGCTCTGGAGTTGGC 61.030 63.158 0.00 0.00 0.00 4.52
2521 2579 1.374758 GGTCGTGCTCTGGAGTTGG 60.375 63.158 0.00 0.00 0.00 3.77
2522 2580 1.374758 GGGTCGTGCTCTGGAGTTG 60.375 63.158 0.00 0.00 0.00 3.16
2523 2581 0.251653 TAGGGTCGTGCTCTGGAGTT 60.252 55.000 0.00 0.00 0.00 3.01
2524 2582 0.251653 TTAGGGTCGTGCTCTGGAGT 60.252 55.000 0.00 0.00 0.00 3.85
2525 2583 0.895530 TTTAGGGTCGTGCTCTGGAG 59.104 55.000 0.00 0.00 0.00 3.86
2526 2584 0.606604 GTTTAGGGTCGTGCTCTGGA 59.393 55.000 0.00 0.00 0.00 3.86
2527 2585 0.736325 CGTTTAGGGTCGTGCTCTGG 60.736 60.000 0.00 0.00 0.00 3.86
2528 2586 0.736325 CCGTTTAGGGTCGTGCTCTG 60.736 60.000 0.00 0.00 35.97 3.35
2529 2587 0.896940 TCCGTTTAGGGTCGTGCTCT 60.897 55.000 0.00 0.00 41.52 4.09
2530 2588 0.735287 GTCCGTTTAGGGTCGTGCTC 60.735 60.000 0.00 0.00 41.52 4.26
2531 2589 1.291272 GTCCGTTTAGGGTCGTGCT 59.709 57.895 0.00 0.00 41.52 4.40
2532 2590 0.390735 ATGTCCGTTTAGGGTCGTGC 60.391 55.000 0.00 0.00 41.52 5.34
2533 2591 1.636988 GATGTCCGTTTAGGGTCGTG 58.363 55.000 0.00 0.00 41.52 4.35
2534 2592 0.533951 GGATGTCCGTTTAGGGTCGT 59.466 55.000 0.00 0.00 41.52 4.34
2535 2593 3.357504 GGATGTCCGTTTAGGGTCG 57.642 57.895 0.00 0.00 41.52 4.79
2546 2604 9.233232 GACATATTTCAAATTAAACGGATGTCC 57.767 33.333 8.05 0.00 34.32 4.02
2547 2605 9.233232 GGACATATTTCAAATTAAACGGATGTC 57.767 33.333 9.89 9.89 36.60 3.06
2548 2606 7.913297 CGGACATATTTCAAATTAAACGGATGT 59.087 33.333 0.00 0.00 0.00 3.06
2549 2607 7.913297 ACGGACATATTTCAAATTAAACGGATG 59.087 33.333 0.00 0.00 0.00 3.51
2550 2608 7.992008 ACGGACATATTTCAAATTAAACGGAT 58.008 30.769 0.00 0.00 0.00 4.18
2551 2609 7.380431 ACGGACATATTTCAAATTAAACGGA 57.620 32.000 0.00 0.00 0.00 4.69
2552 2610 8.455598 AAACGGACATATTTCAAATTAAACGG 57.544 30.769 0.00 0.00 0.00 4.44
2559 2617 8.899771 CCCTACTTAAACGGACATATTTCAAAT 58.100 33.333 0.00 0.00 0.00 2.32
2560 2618 7.884354 ACCCTACTTAAACGGACATATTTCAAA 59.116 33.333 0.00 0.00 0.00 2.69
2561 2619 7.396418 ACCCTACTTAAACGGACATATTTCAA 58.604 34.615 0.00 0.00 0.00 2.69
2562 2620 6.949715 ACCCTACTTAAACGGACATATTTCA 58.050 36.000 0.00 0.00 0.00 2.69
2563 2621 8.947055 TTACCCTACTTAAACGGACATATTTC 57.053 34.615 0.00 0.00 0.00 2.17
2566 2624 8.810041 CCTATTACCCTACTTAAACGGACATAT 58.190 37.037 0.00 0.00 0.00 1.78
2567 2625 7.233348 CCCTATTACCCTACTTAAACGGACATA 59.767 40.741 0.00 0.00 0.00 2.29
2568 2626 6.042437 CCCTATTACCCTACTTAAACGGACAT 59.958 42.308 0.00 0.00 0.00 3.06
2569 2627 5.363580 CCCTATTACCCTACTTAAACGGACA 59.636 44.000 0.00 0.00 0.00 4.02
2570 2628 5.363868 ACCCTATTACCCTACTTAAACGGAC 59.636 44.000 0.00 0.00 0.00 4.79
2571 2629 5.528337 ACCCTATTACCCTACTTAAACGGA 58.472 41.667 0.00 0.00 0.00 4.69
2572 2630 5.507985 CGACCCTATTACCCTACTTAAACGG 60.508 48.000 0.00 0.00 0.00 4.44
2573 2631 5.067805 ACGACCCTATTACCCTACTTAAACG 59.932 44.000 0.00 0.00 0.00 3.60
2574 2632 6.127338 ACACGACCCTATTACCCTACTTAAAC 60.127 42.308 0.00 0.00 0.00 2.01
2575 2633 5.957774 ACACGACCCTATTACCCTACTTAAA 59.042 40.000 0.00 0.00 0.00 1.52
2576 2634 5.518865 ACACGACCCTATTACCCTACTTAA 58.481 41.667 0.00 0.00 0.00 1.85
2577 2635 5.103940 AGACACGACCCTATTACCCTACTTA 60.104 44.000 0.00 0.00 0.00 2.24
2578 2636 3.956848 GACACGACCCTATTACCCTACTT 59.043 47.826 0.00 0.00 0.00 2.24
2579 2637 3.203934 AGACACGACCCTATTACCCTACT 59.796 47.826 0.00 0.00 0.00 2.57
2580 2638 3.317430 CAGACACGACCCTATTACCCTAC 59.683 52.174 0.00 0.00 0.00 3.18
2581 2639 3.559069 CAGACACGACCCTATTACCCTA 58.441 50.000 0.00 0.00 0.00 3.53
2582 2640 2.385803 CAGACACGACCCTATTACCCT 58.614 52.381 0.00 0.00 0.00 4.34
2583 2641 1.411612 CCAGACACGACCCTATTACCC 59.588 57.143 0.00 0.00 0.00 3.69
2584 2642 2.381911 TCCAGACACGACCCTATTACC 58.618 52.381 0.00 0.00 0.00 2.85
2585 2643 4.667519 AATCCAGACACGACCCTATTAC 57.332 45.455 0.00 0.00 0.00 1.89
2586 2644 4.712829 TCAAATCCAGACACGACCCTATTA 59.287 41.667 0.00 0.00 0.00 0.98
2587 2645 3.517901 TCAAATCCAGACACGACCCTATT 59.482 43.478 0.00 0.00 0.00 1.73
2588 2646 3.104512 TCAAATCCAGACACGACCCTAT 58.895 45.455 0.00 0.00 0.00 2.57
2589 2647 2.232941 GTCAAATCCAGACACGACCCTA 59.767 50.000 0.00 0.00 36.06 3.53
2590 2648 1.002087 GTCAAATCCAGACACGACCCT 59.998 52.381 0.00 0.00 36.06 4.34
2591 2649 1.002087 AGTCAAATCCAGACACGACCC 59.998 52.381 0.00 0.00 38.46 4.46
2592 2650 2.069273 CAGTCAAATCCAGACACGACC 58.931 52.381 0.00 0.00 38.46 4.79
2593 2651 1.461127 GCAGTCAAATCCAGACACGAC 59.539 52.381 0.00 0.00 38.46 4.34
2594 2652 1.608025 GGCAGTCAAATCCAGACACGA 60.608 52.381 0.00 0.00 38.46 4.35
2595 2653 0.798776 GGCAGTCAAATCCAGACACG 59.201 55.000 0.00 0.00 38.46 4.49
2596 2654 2.079925 GAGGCAGTCAAATCCAGACAC 58.920 52.381 0.00 0.00 38.46 3.67
2597 2655 1.699083 TGAGGCAGTCAAATCCAGACA 59.301 47.619 0.00 0.00 38.46 3.41
2598 2656 2.479566 TGAGGCAGTCAAATCCAGAC 57.520 50.000 0.00 0.00 36.26 3.51
2599 2657 2.373169 ACTTGAGGCAGTCAAATCCAGA 59.627 45.455 2.70 0.00 44.83 3.86
2600 2658 2.787994 ACTTGAGGCAGTCAAATCCAG 58.212 47.619 2.70 0.00 44.83 3.86
2601 2659 2.957402 ACTTGAGGCAGTCAAATCCA 57.043 45.000 2.70 0.00 44.83 3.41
2602 2660 3.935828 GAGTACTTGAGGCAGTCAAATCC 59.064 47.826 0.00 0.00 44.83 3.01
2603 2661 4.569943 TGAGTACTTGAGGCAGTCAAATC 58.430 43.478 0.00 0.85 44.83 2.17
2604 2662 4.564406 CCTGAGTACTTGAGGCAGTCAAAT 60.564 45.833 8.54 0.00 44.83 2.32
2605 2663 3.244215 CCTGAGTACTTGAGGCAGTCAAA 60.244 47.826 8.54 0.00 44.83 2.69
2606 2664 2.300152 CCTGAGTACTTGAGGCAGTCAA 59.700 50.000 8.54 1.22 43.26 3.18
2607 2665 1.895798 CCTGAGTACTTGAGGCAGTCA 59.104 52.381 8.54 0.00 0.00 3.41
2608 2666 1.205893 CCCTGAGTACTTGAGGCAGTC 59.794 57.143 13.99 0.00 0.00 3.51
2609 2667 1.270907 CCCTGAGTACTTGAGGCAGT 58.729 55.000 13.99 0.00 0.00 4.40
2610 2668 1.205893 GACCCTGAGTACTTGAGGCAG 59.794 57.143 13.99 8.49 0.00 4.85
2611 2669 1.267121 GACCCTGAGTACTTGAGGCA 58.733 55.000 13.99 0.00 0.00 4.75
2612 2670 1.267121 TGACCCTGAGTACTTGAGGC 58.733 55.000 13.99 5.05 0.00 4.70
2613 2671 3.071023 TGTTTGACCCTGAGTACTTGAGG 59.929 47.826 12.90 12.90 0.00 3.86
2614 2672 4.058817 GTGTTTGACCCTGAGTACTTGAG 58.941 47.826 0.00 0.00 0.00 3.02
2615 2673 3.709653 AGTGTTTGACCCTGAGTACTTGA 59.290 43.478 0.00 0.00 0.00 3.02
2616 2674 3.809832 CAGTGTTTGACCCTGAGTACTTG 59.190 47.826 0.00 0.00 0.00 3.16
2617 2675 3.744530 GCAGTGTTTGACCCTGAGTACTT 60.745 47.826 0.00 0.00 0.00 2.24
2618 2676 2.224305 GCAGTGTTTGACCCTGAGTACT 60.224 50.000 0.00 0.00 0.00 2.73
2619 2677 2.143925 GCAGTGTTTGACCCTGAGTAC 58.856 52.381 0.00 0.00 0.00 2.73
2620 2678 1.071699 GGCAGTGTTTGACCCTGAGTA 59.928 52.381 0.00 0.00 0.00 2.59
2621 2679 0.179018 GGCAGTGTTTGACCCTGAGT 60.179 55.000 0.00 0.00 0.00 3.41
2622 2680 0.179020 TGGCAGTGTTTGACCCTGAG 60.179 55.000 0.00 0.00 31.91 3.35
2623 2681 0.465460 GTGGCAGTGTTTGACCCTGA 60.465 55.000 0.00 0.00 31.91 3.86
2624 2682 1.455383 GGTGGCAGTGTTTGACCCTG 61.455 60.000 0.00 0.00 31.91 4.45
2625 2683 1.152756 GGTGGCAGTGTTTGACCCT 60.153 57.895 0.00 0.00 31.91 4.34
2626 2684 1.454847 TGGTGGCAGTGTTTGACCC 60.455 57.895 0.00 0.00 31.91 4.46
2627 2685 1.733526 GTGGTGGCAGTGTTTGACC 59.266 57.895 0.00 0.00 31.91 4.02
2628 2686 1.355210 CGTGGTGGCAGTGTTTGAC 59.645 57.895 0.00 0.00 34.37 3.18
2629 2687 1.821759 CCGTGGTGGCAGTGTTTGA 60.822 57.895 0.00 0.00 0.00 2.69
2630 2688 2.721231 CCGTGGTGGCAGTGTTTG 59.279 61.111 0.00 0.00 0.00 2.93
2639 2697 0.673644 CTTCTACAAGGCCGTGGTGG 60.674 60.000 23.09 12.02 42.50 4.61
2640 2698 0.034896 ACTTCTACAAGGCCGTGGTG 59.965 55.000 23.09 14.24 33.37 4.17
2641 2699 0.763035 AACTTCTACAAGGCCGTGGT 59.237 50.000 23.09 12.53 33.37 4.16
2642 2700 1.156736 CAACTTCTACAAGGCCGTGG 58.843 55.000 23.09 5.69 33.37 4.94
2643 2701 1.878953 ACAACTTCTACAAGGCCGTG 58.121 50.000 17.83 17.83 33.37 4.94
2644 2702 2.366266 TGTACAACTTCTACAAGGCCGT 59.634 45.455 0.00 0.00 33.37 5.68
2645 2703 2.993899 CTGTACAACTTCTACAAGGCCG 59.006 50.000 0.00 0.00 33.37 6.13
2646 2704 4.004196 ACTGTACAACTTCTACAAGGCC 57.996 45.455 0.00 0.00 33.37 5.19
2647 2705 5.987347 TGTAACTGTACAACTTCTACAAGGC 59.013 40.000 0.00 0.00 37.29 4.35
2648 2706 6.145696 GCTGTAACTGTACAACTTCTACAAGG 59.854 42.308 0.00 0.00 39.75 3.61
2649 2707 6.700081 TGCTGTAACTGTACAACTTCTACAAG 59.300 38.462 0.00 0.00 39.75 3.16
2650 2708 6.575267 TGCTGTAACTGTACAACTTCTACAA 58.425 36.000 0.00 0.00 39.75 2.41
2651 2709 6.040054 TCTGCTGTAACTGTACAACTTCTACA 59.960 38.462 0.00 0.28 39.75 2.74
2652 2710 6.362820 GTCTGCTGTAACTGTACAACTTCTAC 59.637 42.308 0.00 0.00 39.75 2.59
2653 2711 6.040054 TGTCTGCTGTAACTGTACAACTTCTA 59.960 38.462 0.00 0.00 39.75 2.10
2654 2712 5.163447 TGTCTGCTGTAACTGTACAACTTCT 60.163 40.000 0.00 0.00 39.75 2.85
2655 2713 5.047847 TGTCTGCTGTAACTGTACAACTTC 58.952 41.667 0.00 0.00 39.75 3.01
2656 2714 5.018539 TGTCTGCTGTAACTGTACAACTT 57.981 39.130 0.00 0.00 39.75 2.66
2657 2715 4.665833 TGTCTGCTGTAACTGTACAACT 57.334 40.909 0.00 0.00 39.75 3.16
2658 2716 4.750098 ACATGTCTGCTGTAACTGTACAAC 59.250 41.667 0.00 0.00 39.75 3.32
2659 2717 4.956085 ACATGTCTGCTGTAACTGTACAA 58.044 39.130 0.00 0.00 39.75 2.41
2660 2718 4.556233 GACATGTCTGCTGTAACTGTACA 58.444 43.478 18.83 0.00 37.92 2.90
2661 2719 3.608506 CGACATGTCTGCTGTAACTGTAC 59.391 47.826 22.95 0.00 0.00 2.90
2662 2720 3.504520 TCGACATGTCTGCTGTAACTGTA 59.495 43.478 22.95 0.00 0.00 2.74
2663 2721 2.296190 TCGACATGTCTGCTGTAACTGT 59.704 45.455 22.95 0.00 0.00 3.55
2664 2722 2.663602 GTCGACATGTCTGCTGTAACTG 59.336 50.000 22.95 4.18 0.00 3.16
2665 2723 2.558795 AGTCGACATGTCTGCTGTAACT 59.441 45.455 22.95 12.00 0.00 2.24
2666 2724 2.917971 GAGTCGACATGTCTGCTGTAAC 59.082 50.000 22.95 10.24 0.00 2.50
2667 2725 2.556622 TGAGTCGACATGTCTGCTGTAA 59.443 45.455 22.95 6.66 0.00 2.41
2668 2726 2.095212 GTGAGTCGACATGTCTGCTGTA 60.095 50.000 22.95 9.31 0.00 2.74
2669 2727 0.961753 TGAGTCGACATGTCTGCTGT 59.038 50.000 22.95 3.74 0.00 4.40
2670 2728 1.067985 AGTGAGTCGACATGTCTGCTG 60.068 52.381 22.95 8.12 0.00 4.41
2671 2729 1.201181 GAGTGAGTCGACATGTCTGCT 59.799 52.381 22.95 19.01 0.00 4.24
2672 2730 1.068264 TGAGTGAGTCGACATGTCTGC 60.068 52.381 22.95 14.89 0.00 4.26
2673 2731 2.997485 TGAGTGAGTCGACATGTCTG 57.003 50.000 22.95 16.06 0.00 3.51
2674 2732 2.416566 GCATGAGTGAGTCGACATGTCT 60.417 50.000 22.95 10.06 41.14 3.41
2675 2733 1.923204 GCATGAGTGAGTCGACATGTC 59.077 52.381 19.50 16.21 41.14 3.06
2676 2734 1.404717 GGCATGAGTGAGTCGACATGT 60.405 52.381 19.50 0.00 41.14 3.21
2677 2735 1.284657 GGCATGAGTGAGTCGACATG 58.715 55.000 19.50 12.32 41.72 3.21
2678 2736 0.176680 GGGCATGAGTGAGTCGACAT 59.823 55.000 19.50 2.45 0.00 3.06
2679 2737 1.184970 TGGGCATGAGTGAGTCGACA 61.185 55.000 19.50 0.00 0.00 4.35
2680 2738 1.591703 TGGGCATGAGTGAGTCGAC 59.408 57.895 7.70 7.70 0.00 4.20
2681 2739 4.111967 TGGGCATGAGTGAGTCGA 57.888 55.556 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.