>input_sequence_71393
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---------------------------------------------------ATGGCTTCCGCCGAGCTAGGGTCGGACGC
GTGC------GGCTTTCCCTGCGGCGGCGACGACGGCGCGATGGCGGCGCTCTCGCCGACGGTCGTCGTGTCGGTGCTCG
CGTCTCTGCTGGAGCGGCACATCGCCCGCAACGAGAGAGCCTTGGCCGGGACGACGGCCGGTCGTGGCCATGCGGCGTCC
GGCGAGGACGCGAGGAGGGCCGCGGCCTTTGACGGCGGCACGGTGCTGGACATGGGCGTGCGGGAGTTCCTGGAGCGGTT
CTCCCGGTACGCGCAAGTGTCGCCGCAGGTGTACGTGGTGGCGTACGCCTACCTGGACCGGCTCCGCCGCGGCGGCGACG
GCGCCGGGGCGGTGCGCGTCGTGGCGACCAACGCGCAGCGGCTGCTCACCGCGGCCATCCTGGTGGCCTCCAAGTTCGTG
GAGGACAGGAACTACAAGAACTCCTACTTCGCGGCGGTGGGCGGTCTCAGCGCGGCGGAGCTGAGCTCGCTGGAGCTGGA
CTTCCTCTTCCTGATGCGGTTCAGGCTCAACGTCAGCGTGAGCGTGTTCCGGAGCTACTGCCGGCACCTCGAGAGGGAGG
TGGGCCACGGCGGCGGGTACCAGGTCGAGAGGTGCCTAGAGAAGGCCCTCCTCGTCTCCTCCGGGGAGGCGCGGAGGCAG
CACCGGCAGGCGCCAGCGGCGGCAGCAGCTCAGTAA--------------------------------------------
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>chr2B_1_TraesCS2B01G432000
GGGTGCTTTTTTTTTTGACCGGACGTGTTTATGAGGATTGTAACCCAATGGCTTGGTGGGTAATTAAATCAGATTGCATG
TTTGAATGGATATGAAGATTTGGTTCTCCACCATCTCTTCCTTTTACAGGGATAGTAGATGAATTGCCCGAAGACCGAAA
AATCGAGACACCCGAATGCCCACTGTGGCAAGTTACGACCTTTCCGCATGCGTAGAGTACCTTCCCGCTGCTGTTTATCT
GGCATTTTTTT-AATTTGGATTGGAG-TTGACGAATTTATATAAATATAAAAACGTGCGACCAAGTGGTTAAGAGCTGTT
AGTTAGGCCGCGCCCAACCACACTGTCTCCGGCGGTACATTGCGACGTCTTAACCGAAGCCCCCATCGCGCCATTAACAA
TGACAATCTATTCTCTCGCAAGCAAGCAA----GAGGATCCGTCCACGCCCACGCCCACGCGTCATGCGTGCCATCGAGA
CGCCCATGCCAGAACAGCAGGTAGCAGCACGTACGCAGGCAGAGGAGA---GGTCAGGAATAGTTAATGGCCGTACGGCG
ATCCACCGGCACCGGCAGACACCGACAAGACAATTTGGCACCGGCCTCTGCGATCACGGATGCCGCTCCAACCGCACCAC
CGGACAAGGCCATCGCGCCCGAATCCGCCGTTATTATACGCTTCGTAATCTCAGACCCTCTAAACCAAGGCCAGACAACC
AAGGTCGAAGAAGGTGCGTGAAGCCTTCCTCTCCGTCGTCCTTTG-CCCCCCTGTTACGTGCACGCTGTGATTATGTTAA
TGCCGCGAC-GCCATCGCTTTCGCCGTCCTTTCCTCCAACCTCCATTGTTTAGCCACTGGCCCACGCCCTGCCGCCCCCT
CAAATGCTTAAGTACCGGCGCCCTCGAGGCCTTGGAGTGTACGTGGTGCGGGCGTGGCGGTAGGAACCAGCCAACCTTTG
CGTGTGTCCAAGATCCTCGTGAACCGTGACCACCAGAGAATTCTTGGAGAAATGGCTTCCGCCGAGCTAGGGTCGGACGC
GTGC------GGCTTTCCCTGCGGCGGCGACGACGGCGCGATGGCGGCGCTCTCGCCGACGGTCGTCGTGTCGGTGCTCG
CGTCTCTGCTGGAGCGGCACATCGCCCGCAACGAGAGAGCCTTGGCCGGGACGACGGCCGGTCGTGGCCATGCGGCGTCC
GGCGAGGACGCGAGGAGGGCCGCGGCCTTTGACGGCGGCACGGTGCTGGACATGGGCGTGCGGGAGTTCCTGGAGCGGTT
CTCCCGGTACGCGCAAGTGTCGCCGCAGGTGTACGTGGTGGCGTACGCCTACCTGGACCGGCTCCGCCGCGGCGGCGACG
GCGCCGGGGCGGTGCGCGTCGTGGCGACCAACGCGCAGCGGCTGCTCACCGCGGCCATCCTGGTGGCCTCCAAGTTCGTG
GAGGACAGGAACTACAAGAACTCCTACTTCGCGGCGGTGGGCGGTCTCAGCGCGGCGGAGCTGAGCTCGCTGGAGCTGGA
CTTCCTCTTCCTGATGCGGTTCAGGCTCAACGTCAGCGTGAGCGTGTTCCGGAGCTACTGCCGGCACCTCGAGAGGGAGG
TGGGCCACGGCGGCGGGTACCAGGTCGAGAGGTGCCTAGAGAAGGCCCTCCTCGTCTCCTCCGGGGAGGCGCGGAGGCAG
CACCGGCAGGCGCCAGCGGCGGCAGCAGCTCAGTAAAAGGCCGTCGCCAACCTGGACGCACTAAAGACTAAGGTAGCCGC
AGCCATTGACGGCAGCCGCACGAGCTCATCGCCGTGGCGTGTGCCGCGTCATGACAAGATCGAGTGCCAAGTGCCC----
--ACACGGGCTGTACCTGTACGTACATAATC---GTAGAAAGTTTGCTAACTTGCATGTGTTAGCAGTTGTACACACAAC
CTCGGTTGGAAAAT-AAACCGATGCGAGGATTAGTAAGAAAAAATCTCTCTGTTT-ACT----CTGCTTATGCGGGCACA
ATGACAAACGATTGCTTTTTAGCAGCTAAACAGAATTGACAGAGACTGGCAGATCGAGTGAGAATTGTAACAAAATATCT
-----------------------TTCCCATTTATACGTAGAATAAAGAGAAGGGGACACCTTTCCGCAACTCCCGGCCCA
TGATCATGCCAACCGACGGCAACAAATGATTCCATACCACTTTGTTAATCTACAAATGATTACTAGAACGTATCAATGCC
GAACGTAGCCTCCACAATCTTCTTCATTTTCTCTTCGAAAATGTGCGATT-GTGTCGTCGGTGCGACATCATATCATCGG
CCAATAACTTTGCTGATAATGAAAAGGTGGTAGGCACGGCACGGCACGGCACAGCACAGGACAGCACATCCCCGGCACGC
TCGAGCAACCCCATCAAGCCCCCACTGGGATACGGAAAACGACTCGTATCCGTTCATTGGTGGATCAGATCCTGATAGTG
CAGCTGCACGGAGGATACCCCTGGCCCGGGCCTCGTGAGTCGTGTGACCTGGTCCAT-CCATGCGCATTTGCGCACACAG
CGTTGCAAAAGGGTTAGGCCAACTCCAGAGCACGACCCTAAACGGACATCCGTTTAATTTGAAATATGTCCGTTTAAGTA
GGGTAATAGGGTCGTGTCTGGATTTGACTGCCTCAAGTACTCAGGGTCAAACACTGCCACCACGGCCTTGTAGAAGTTGT
ACAGTTACAGCAGACATGTCGACTCACTCATGCCCA
>chr2D_140
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-----------------------------------------------------------TGAATTGCCCGAAGACCGAAA
AATCGAGACACCCGAATGCCCACT---GCAAGTTACGACCTTTCCGCATGCGTAGAGCACCTTTCCGCTGCTGTTTATCT
GGCATTTAAAAAAAATTGGATTGGAGTTTGACGAATTTATACAAATATAAAAACGTGCGACCAAGTGGTTAAGAGCTGTT
AGTTAGGGCGCGCCCAACCACACTGTCTCCGGCGGTGCATTGCGACGTCTTAACCGAAGCCCCCATCGCGCCATTAACAA
TGACAATCTATTCTCTCGCAAGCAAGCAAAC--GAGGATCCGTCCACGCCCACGCCCACGCGTCATGCGTGCCACCGAGA
CGCCCATACCAGAACAGCAGGTAGCAGCACGTACGCAGGGAGGGGTCAGCCGGTCAGGAATAGTTAATG-CCGTACGGCG
ATCCACCGGCACCGGCAGACACCGACAAGACAATTTGGCACCGGCCTCGCCGATCACGGATGCCGCTCCAACCGCACCAC
CGGACAAGCCCATCGCGCCCGAATCCGCCGTTATTATACGCTTCGTAATCTCAGAGCCTCTAAACCAAGG----------
----TCGAAGAAGGTGCGTGAAGCCTTCCTCTCCGTCGTCCTTTG--CCCCCTGTTACGTGCACGTTGTGATTATGTTAA
TGCCGCGTTGGCCATCGCTTTCGCCGTCCTTTCCTCCAACCTCCATTGTTTAGCCACTTCCCCACGCCCTGCCGCCACCT
CAAATGCTTAAGTATTGGCGCCCTCGAGGCCTTGGAGTGTACGTGGTGCGGGCGTGGCGGTAGGAACCAGCCAAGCTTTG
GGTGTGTCCAAGATCCTCGTGAGCCGTGACCACCAGAGAATTCTTGGAGAAATGGCTTCCGCCGAGCTTGGGTCGGACGC
GTGC------GGCTTCCCCTGCGGCGGCGACGACGGCGCGATGGCGGCGCTCTCGCCGACGGTCGTCGTGTCGGTGCTCG
CGTCTCTGCTGGAGCGGCACATCGCGCGCAACGAGAGGGCCACGGCCGGGGCGACGGCCGGCCATGGCCCCGAGGCGTCC
GGCGAGGACGCGAGGAGGGCCGCGGCCTTCGACGGCGGCACGGTGCTGGACATGGGCATGCGGGAGTTCCTGGAGCGATT
CTCCCGGTACGCGCACGTGTCGCCGCAGGTGTACGTGGTGGCGTACGCCTACCTGGACCGGCTCCGCCGCGGCGGCGACG
GCGCCGGGGCGGTGCGCGTCGTGGCGACCAACGCGCAGCGGCTGCTCACTGCGGCCATCCTGGTGGCCTCCAAGTTCGTG
GAGGACAGGAACTACAAGAACTCCTACTTCGCGGCGGTGGGCGGGCTGAGCGCGGCGGAGCTGAGTTCGCTGGAGCTGGA
CTTCCTCTTCCTGATGCGGTTCAGGCTCAACGTGAGCGTGAGCGTGTTCCGGAGCTACTGCCGGCACCTGGAGAGGGAGG
TGGGCCACGGCGGCGGGTACCAGGTCGAGAGGTGCCTCGAGAAGGCCCTCCTCGTCTCCTCCGGGGAGGCGCGGCGGCAG
CACCGGCAGACGCCAGCGGCGGCAGCAGCTCAGTAAAAGGCCCTCGCCAACCTGGACACACTAAAGACTAAGGTAGCCGC
AGCCATTGACGGCGGCCGCACGAGCTCGTCGCCGTGGCGTGTGCCGCGTCGTGACAAGATCGAGTGCCCAGTGGCC----
--ACACGGGCTGTACCTGTACGTACATAATC---GTAGAAAGTTTGCTAACTTGCATGTGTTAGCAGTTGTACACACAAC
CTCGATAGGAAAAA-GAACCAATGCGAGGATTAGTAAGAAAAAAAATCTCTTTTTTACT----TTGCTTATTCGGGCACA
ATGACAAATGATTGCTTTTTAGCAGCTAAACAGAATGGACAGGGACTGGCAGATCGAGTGAGAATTGTAACAAAATATCC
-----------------------TTCCCATT--TACGTAGAATAAAGAGAAGGGGACAGCTTTCCGTAACTCCCGGCCCA
TGATCATGCCAACCGACGGCAACAAATGATTCCATACCACTTTCTTAATCTACAAATGATTA---GAACGTATCTGTGCC
GAACGTAGCCTCCACAATCTTCTTCATTTTCTCTTCGAAAATGTGCGACTA-TGTCGTCGGTGCGACATCATATCATCGG
CCAATAACTTTGCCGATAATGAAAAGGTGGTAGGCACGGCACGGCACAGCA----------CA-----TCCCCGGCACGC
TGCAGCAACCCCATCAAGCCCCCACAGCGATACGGAAAAGGACTCGTATCCGTCCATTGGTGGATCAGATCCTGACAGTG
CAGCTGCACGGAGGATACCCGTGGCCCGGCCCTCGTGAGT--TGTGACCTGGCCCAT-CCATGCGCAGTTGCGCACACAG
CA---TTCCAAAAGG-----------------------------------------------------------------
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>chr2A_219
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----------------------------------------------------------ACCTTTCCGCTGCTGTTTATCT
GGCATTTTTTA-GATTTGAATTGGAGTTTGACGAATTTATACAAATATAAAAACGTGCGACCAAGTGGTTAAGAGCTGTT
AGTTAGGGCGCGCCCAACCACATTGTCTCCGGCGGTGCATTGCGACGTCTTAACCGAAGCCCCCATCGCACCATTAACAA
TGACAATCTATTCTCTCGCAAGCAAGCAAGCAAGAGGATCCGTCCACGCCCACGCCCACGCGTCACGCGTGCCATCCAGA
CGCCCATACCAGAACAGCAGGTAGCAGCACGTACGCGGGGAGGGGTCAGCCGGTCAGGAATAGTTAATGGCCGTACGGCG
ATCCACCGGCACCGGCAGACACCGACAAGACAATTTGGCACCGGCCTCTGCGATCACGGATGCCGCCCCAACCGCACCGC
CGGACAAGCCCATCGCGCCCGAATCCGCCGTTATTATACGCTTCGTAATCTCAGACCCTCTAAACCAAGGA---------
-----CGAAGAAGGTGCGTGAAGCCTTCCTCTCCGTCGTCCTTTGCCCCCCCTGTTACGTGCACGCTGCGATTATGTTAA
TGCCGCGCTGGCCATCGCTTTCGCCGTCCTTTCCTCCAACCTCCATTGTTTAGCCGCTGGCCCACGCCCCGCCGCCCCCT
CAAATGCTTAAGTATCGGCGCCCTCGAGGCCTCGGAGTGTACGTGGTGCGGGCGTGGCGGTAGGAACCAGCCAAGCTTTG
CGTGCGTCCAAGATCCTCGTGAGCCGTGACCGCCAGAGAATTCTTCCAGAAATGGCTTCCGCCGAGCTAGGGTCGGAGTC
GGACGGGTATGGCTTCCCCTGCGGCGGCGACGACGGCGCGACGGCGGCGCTCTCGCCGGCGGTGGTCGTGTCGGTGCTCG
CGTCTCTGCTGGAGCGGCACATCGCGCGCAACGAGAGGGCCTTGGCCGG---------CGCCCATGGCCATGCGGCGTCC
GGCGAGGACGCGAGGAGGGCCGCGGCCTTCGACGGCGGCACGGTGCTGGACATGGGCATGCGGGAGTTCCTGGAGCGGTT
CTCCCGGTACGCGCACGTGTCGCCGCAGGTGTACGTGGTGGCGTACGCCTACCTGGACCGGCTCCGCCGCGGCGGCGACG
GCGCCGGGGCGGTGCGCGTCGTGGCGACCAACGCGCAGCGCCTGCTCACCGCGGCCATCCTGGTGGCCTCCAAGTTCGTG
GAGGACAGGAACTACAAGAACTCCTACTTCGCGGCGGTGGGCGGGCTGGGCGCGGCGGAGCTGAGCTCGCTGGAGCTGGA
CTTCCTCTTCCTGATGCGGTTCCGGCTCAACGTCAGCGTGAGCGTGTTCCGGAGCTACTGCCGGCACCTGGAGAGGGAGG
CGGGCCACGGCGGCGGGTACCAGGTCGAGAGGTGCCTTGAGAAGGCCCTCCTCGTCTCCTCCGGGGAGGCGCGGCGGCAG
CACCGGCAGCCGCCAGCGGCGGCGGCAGCTCAGTAAAAGGTCCTCGCCAACCTCGACGCACTAAAGACTAAGGTAGCCGA
TGCCATTGACGGCGGCCGCACGAGCTCGTCGCCGTGGCGTGTGCCGTGTCGTGACAAGATCGAGCGCCCAGTGCCGACAC
GGACACGGGCTGTACCTGTACGTACATAATGGTAGTAGAAAGTTTGCTAACTTGCATGTATTAGCAGTTGTACACACAAC
CTCGATTGGAAAAAAGAACCGATGCGAGGATTAGTAAGAGAAAATCTCTCTTTTT-ACTCTGCTTACTTATGCGGGCACA
ATGACAAACGATTGCTTTTTAGCAGCTAAACAGAATCGACAGGGGCTGGCAGATCGAGTGAGAATTGTAACAAAATATCT
TTCCCGTCAAAAAATATATATCTTTCCCATT--TACGTAGAATAAAGAGAAGGGGACACCTTTGCGTAACTCCCGGCCCG
TGATCATGCCAACCGACGGCAACAAATGATTCCATACCACTTTCTAAATCCACAAATGATTA---GAACGTATCAGTGCT
GAACGTAGCCTCCACAATCTTCTTCATTTTCTCTTCGAAAATGTGCGATTTGTGTCGTCGGTGCGACATCATGTCATCGG
CCAATAACTTTGCTGATAATGAAAAGGTGGTAGGCACGGCACGGCACAGCA----------CAGCACATCCCCGGCACGC
TGGAGCAACCCCATCAAGCCCCCACAGCGATACGGAAAAGGACTCGTATCCGTCCATTGGTGGATCAGATCCTGACAGTG
CAGGTGCACGGAGGATACCCCTGGGCCGGCC-----------TGTAACCTGGTCCATCCCATGCGCACTTGCGCACACAG
CAGCATTCCAAAAGG-----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
------------------------SSS------------------------------S-----S----------------
----------S------------------------------S--------------------------------------
-------S----------------------------S-------------------------------------------
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-------S-------------------------------S--S--SS---------------------------------
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--------S-------------------------------------------------------------SSSSSSSSSS
SSSS----------------------------------------------------------------------------
-------SS-----------------------------------------------------------------------
--------------S-----------------------------------------------------------S-----
----------------------S---------------------------------------------------------
---------------S----------------------------------------------------------------
-------------------------S-----------S------------S----------S-S----------------
-----------------------------S---------------------------S----------------------
---------------S----------------------------------------------------------------
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--------------------------------------------S--S--------------------------------
---------------------------------------------------------------------S----------
-------------------------------------S------------------------------------S-----
---------S--------------------------------S-------------------------------------
-------------S-------------S----------------------S-----------------S-----------
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----S--------S-S-----------------------------------S-----------S----------------
------------------------------------S-----S-------------------------------------
-------------------------------SS---------------------------------S-------------
-------------------------------------------S------------------SSS----------S----
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-----------------------------------------------S---SSSSSSSSSS-------------------
-S-----------------------S-S-----------S-------------S---------------------S----
-----------------------------S----------SS-------------------------S------------
-SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_721
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-------------------------------------------------------------AAACCAAGGCCAGACAACC
A-------------------------------------------------------------------------------
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>reverse_2698
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---------------------------------------------------------CACCACGGCCTTGTAGAAGT---
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