Multiple sequence alignment - TraesCS2B01G421600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G421600 chr2B 100.000 2007 0 0 548 2554 607048242 607050248 0.000000e+00 3707.0
1 TraesCS2B01G421600 chr2B 100.000 228 0 0 1 228 607047695 607047922 3.040000e-114 422.0
2 TraesCS2B01G421600 chr2B 82.203 118 19 2 674 790 238637918 238637802 1.620000e-17 100.0
3 TraesCS2B01G421600 chr2D 95.176 1679 52 11 891 2551 515573837 515575504 0.000000e+00 2625.0
4 TraesCS2B01G421600 chr2D 94.737 38 2 0 824 861 515551430 515551467 2.740000e-05 60.2
5 TraesCS2B01G421600 chr2A 94.571 1713 50 17 860 2554 659270720 659272407 0.000000e+00 2608.0
6 TraesCS2B01G421600 chr2A 94.737 38 2 0 824 861 659232361 659232398 2.740000e-05 60.2
7 TraesCS2B01G421600 chr4B 88.066 243 28 1 548 790 636772160 636772401 1.160000e-73 287.0
8 TraesCS2B01G421600 chr5B 86.893 206 23 1 581 786 509209376 509209577 7.110000e-56 228.0
9 TraesCS2B01G421600 chr7D 85.950 121 15 2 671 790 327491159 327491278 7.420000e-26 128.0
10 TraesCS2B01G421600 chrUn 85.455 110 13 3 674 782 472384248 472384141 7.470000e-21 111.0
11 TraesCS2B01G421600 chrUn 92.537 67 5 0 722 788 304492392 304492326 2.090000e-16 97.1
12 TraesCS2B01G421600 chrUn 92.537 67 5 0 722 788 469849386 469849452 2.090000e-16 97.1
13 TraesCS2B01G421600 chr4A 83.898 118 16 3 674 790 69994644 69994529 2.690000e-20 110.0
14 TraesCS2B01G421600 chr3A 92.958 71 5 0 720 790 660904135 660904065 1.250000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G421600 chr2B 607047695 607050248 2553 False 2064.5 3707 100.000 1 2554 2 chr2B.!!$F1 2553
1 TraesCS2B01G421600 chr2D 515573837 515575504 1667 False 2625.0 2625 95.176 891 2551 1 chr2D.!!$F2 1660
2 TraesCS2B01G421600 chr2A 659270720 659272407 1687 False 2608.0 2608 94.571 860 2554 1 chr2A.!!$F2 1694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.030638 TCCTTTTTGCTTGTGCGAGC 59.969 50.0 4.53 4.53 43.34 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 2010 1.834263 CTACCAGAAGAAGGGACCAGG 59.166 57.143 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.062070 AAGCAGCGGGGATATCTCC 58.938 57.895 12.09 12.09 41.26 3.71
25 26 3.459386 GGGGATATCTCCGACAGGT 57.541 57.895 5.69 0.00 43.11 4.00
26 27 1.718280 GGGGATATCTCCGACAGGTT 58.282 55.000 5.69 0.00 43.11 3.50
27 28 1.344763 GGGGATATCTCCGACAGGTTG 59.655 57.143 5.69 0.00 43.11 3.77
28 29 1.344763 GGGATATCTCCGACAGGTTGG 59.655 57.143 2.05 0.00 43.11 3.77
29 30 2.317040 GGATATCTCCGACAGGTTGGA 58.683 52.381 8.12 8.12 40.77 3.53
40 41 4.436368 GGTTGGAGACCTCGAGGA 57.564 61.111 37.69 12.53 45.55 3.71
41 42 2.667348 GGTTGGAGACCTCGAGGAA 58.333 57.895 37.69 18.20 45.55 3.36
42 43 0.246910 GGTTGGAGACCTCGAGGAAC 59.753 60.000 37.69 27.39 45.55 3.62
43 44 2.166485 GGTTGGAGACCTCGAGGAACT 61.166 57.143 37.69 31.03 45.55 3.01
44 45 1.067495 GTTGGAGACCTCGAGGAACTG 60.067 57.143 37.69 11.43 41.55 3.16
45 46 1.251527 TGGAGACCTCGAGGAACTGC 61.252 60.000 37.69 33.11 41.55 4.40
46 47 1.251527 GGAGACCTCGAGGAACTGCA 61.252 60.000 37.69 0.00 41.55 4.41
47 48 0.172352 GAGACCTCGAGGAACTGCAG 59.828 60.000 37.69 13.48 41.55 4.41
48 49 1.216710 GACCTCGAGGAACTGCAGG 59.783 63.158 37.69 9.39 41.55 4.85
49 50 2.125350 CCTCGAGGAACTGCAGGC 60.125 66.667 28.21 9.55 41.55 4.85
50 51 2.507992 CTCGAGGAACTGCAGGCG 60.508 66.667 19.93 12.97 41.55 5.52
51 52 4.742201 TCGAGGAACTGCAGGCGC 62.742 66.667 19.93 0.00 41.55 6.53
53 54 3.426568 GAGGAACTGCAGGCGCAC 61.427 66.667 19.93 3.36 45.36 5.34
56 57 4.077188 GAACTGCAGGCGCACGAC 62.077 66.667 19.93 0.00 45.36 4.34
57 58 4.908687 AACTGCAGGCGCACGACA 62.909 61.111 19.93 0.00 45.36 4.35
58 59 4.687215 ACTGCAGGCGCACGACAT 62.687 61.111 19.93 0.00 45.36 3.06
59 60 4.156622 CTGCAGGCGCACGACATG 62.157 66.667 10.83 0.00 45.36 3.21
62 63 3.490759 CAGGCGCACGACATGGAC 61.491 66.667 10.83 0.00 0.00 4.02
65 66 3.838795 GCGCACGACATGGACGTC 61.839 66.667 7.13 7.13 42.07 4.34
66 67 2.126463 CGCACGACATGGACGTCT 60.126 61.111 16.46 0.00 42.07 4.18
67 68 1.733041 CGCACGACATGGACGTCTT 60.733 57.895 16.46 0.12 42.07 3.01
68 69 1.674611 CGCACGACATGGACGTCTTC 61.675 60.000 16.46 6.26 42.07 2.87
69 70 1.674611 GCACGACATGGACGTCTTCG 61.675 60.000 16.46 18.79 42.07 3.79
70 71 1.071019 CACGACATGGACGTCTTCGG 61.071 60.000 23.26 12.40 42.07 4.30
71 72 2.158959 CGACATGGACGTCTTCGGC 61.159 63.158 16.46 4.98 45.48 5.54
87 88 3.056328 GCGCCGCTCCTCCTTTTT 61.056 61.111 0.00 0.00 0.00 1.94
88 89 2.870372 CGCCGCTCCTCCTTTTTG 59.130 61.111 0.00 0.00 0.00 2.44
89 90 2.568612 GCCGCTCCTCCTTTTTGC 59.431 61.111 0.00 0.00 0.00 3.68
90 91 1.973812 GCCGCTCCTCCTTTTTGCT 60.974 57.895 0.00 0.00 0.00 3.91
91 92 1.527433 GCCGCTCCTCCTTTTTGCTT 61.527 55.000 0.00 0.00 0.00 3.91
92 93 0.242017 CCGCTCCTCCTTTTTGCTTG 59.758 55.000 0.00 0.00 0.00 4.01
93 94 0.954452 CGCTCCTCCTTTTTGCTTGT 59.046 50.000 0.00 0.00 0.00 3.16
94 95 1.335324 CGCTCCTCCTTTTTGCTTGTG 60.335 52.381 0.00 0.00 0.00 3.33
95 96 1.603931 GCTCCTCCTTTTTGCTTGTGC 60.604 52.381 0.00 0.00 40.20 4.57
96 97 0.667993 TCCTCCTTTTTGCTTGTGCG 59.332 50.000 0.00 0.00 43.34 5.34
97 98 0.667993 CCTCCTTTTTGCTTGTGCGA 59.332 50.000 0.00 0.00 43.34 5.10
98 99 1.335324 CCTCCTTTTTGCTTGTGCGAG 60.335 52.381 0.00 0.00 43.34 5.03
99 100 0.030638 TCCTTTTTGCTTGTGCGAGC 59.969 50.000 4.53 4.53 43.34 5.03
100 101 1.270777 CCTTTTTGCTTGTGCGAGCG 61.271 55.000 6.90 0.00 45.64 5.03
101 102 1.270777 CTTTTTGCTTGTGCGAGCGG 61.271 55.000 6.90 0.00 45.64 5.52
102 103 3.822403 TTTTGCTTGTGCGAGCGGC 62.822 57.895 6.90 0.00 45.64 6.53
118 119 2.080286 CGGCAGTAGCTGTTGTTACT 57.920 50.000 0.00 0.00 42.33 2.24
119 120 2.413837 CGGCAGTAGCTGTTGTTACTT 58.586 47.619 0.00 0.00 42.33 2.24
120 121 3.581755 CGGCAGTAGCTGTTGTTACTTA 58.418 45.455 0.00 0.00 42.33 2.24
121 122 3.612860 CGGCAGTAGCTGTTGTTACTTAG 59.387 47.826 0.00 0.00 42.33 2.18
122 123 3.371285 GGCAGTAGCTGTTGTTACTTAGC 59.629 47.826 0.00 0.00 37.98 3.09
124 125 4.092091 GCAGTAGCTGTTGTTACTTAGCTG 59.908 45.833 14.96 0.00 45.36 4.24
125 126 4.627467 CAGTAGCTGTTGTTACTTAGCTGG 59.373 45.833 14.96 0.00 45.36 4.85
126 127 4.527038 AGTAGCTGTTGTTACTTAGCTGGA 59.473 41.667 14.96 0.00 45.36 3.86
127 128 3.931578 AGCTGTTGTTACTTAGCTGGAG 58.068 45.455 0.00 0.00 44.23 3.86
128 129 3.003480 GCTGTTGTTACTTAGCTGGAGG 58.997 50.000 0.00 0.00 33.53 4.30
129 130 3.306780 GCTGTTGTTACTTAGCTGGAGGA 60.307 47.826 0.00 0.00 33.53 3.71
130 131 4.499183 CTGTTGTTACTTAGCTGGAGGAG 58.501 47.826 0.00 0.00 0.00 3.69
131 132 3.901844 TGTTGTTACTTAGCTGGAGGAGT 59.098 43.478 0.00 0.00 0.00 3.85
132 133 4.246458 GTTGTTACTTAGCTGGAGGAGTG 58.754 47.826 0.00 0.00 0.00 3.51
133 134 3.774734 TGTTACTTAGCTGGAGGAGTGA 58.225 45.455 0.00 0.00 0.00 3.41
134 135 4.157246 TGTTACTTAGCTGGAGGAGTGAA 58.843 43.478 0.00 0.00 0.00 3.18
135 136 4.220821 TGTTACTTAGCTGGAGGAGTGAAG 59.779 45.833 0.00 0.00 0.00 3.02
136 137 1.552792 ACTTAGCTGGAGGAGTGAAGC 59.447 52.381 0.00 0.00 35.86 3.86
137 138 0.905357 TTAGCTGGAGGAGTGAAGCC 59.095 55.000 0.00 0.00 36.28 4.35
138 139 0.978146 TAGCTGGAGGAGTGAAGCCC 60.978 60.000 0.00 0.00 36.28 5.19
139 140 2.581354 CTGGAGGAGTGAAGCCCG 59.419 66.667 0.00 0.00 0.00 6.13
140 141 3.003173 TGGAGGAGTGAAGCCCGG 61.003 66.667 0.00 0.00 0.00 5.73
141 142 2.683933 GGAGGAGTGAAGCCCGGA 60.684 66.667 0.73 0.00 0.00 5.14
142 143 2.726351 GGAGGAGTGAAGCCCGGAG 61.726 68.421 0.73 0.00 0.00 4.63
143 144 3.378399 GAGGAGTGAAGCCCGGAGC 62.378 68.421 0.73 4.57 44.25 4.70
144 145 4.475135 GGAGTGAAGCCCGGAGCC 62.475 72.222 0.73 0.00 45.47 4.70
145 146 4.821589 GAGTGAAGCCCGGAGCCG 62.822 72.222 0.73 1.06 45.47 5.52
156 157 3.807538 GGAGCCGCTCGACGTGTA 61.808 66.667 14.21 0.00 41.42 2.90
157 158 2.277373 GAGCCGCTCGACGTGTAG 60.277 66.667 4.23 0.00 41.42 2.74
158 159 2.745100 AGCCGCTCGACGTGTAGA 60.745 61.111 0.00 0.00 41.42 2.59
159 160 2.576317 GCCGCTCGACGTGTAGAC 60.576 66.667 0.00 0.00 41.42 2.59
160 161 2.099831 CCGCTCGACGTGTAGACC 59.900 66.667 0.00 0.00 41.42 3.85
161 162 2.276493 CGCTCGACGTGTAGACCG 60.276 66.667 0.00 0.00 36.87 4.79
162 163 2.576317 GCTCGACGTGTAGACCGC 60.576 66.667 0.00 0.00 0.00 5.68
587 588 4.880537 CAGGCTACTGCGGCGGAG 62.881 72.222 27.12 27.12 38.01 4.63
590 591 4.577246 GCTACTGCGGCGGAGGAG 62.577 72.222 33.16 33.16 35.59 3.69
591 592 3.905678 CTACTGCGGCGGAGGAGG 61.906 72.222 30.51 16.41 33.63 4.30
592 593 4.435970 TACTGCGGCGGAGGAGGA 62.436 66.667 31.33 11.57 33.63 3.71
637 638 4.508128 CGGCCGCGGAAGAGCTAA 62.508 66.667 33.48 0.00 34.40 3.09
638 639 2.890961 GGCCGCGGAAGAGCTAAC 60.891 66.667 33.48 7.28 34.40 2.34
639 640 3.255379 GCCGCGGAAGAGCTAACG 61.255 66.667 33.48 0.00 34.40 3.18
640 641 2.582498 CCGCGGAAGAGCTAACGG 60.582 66.667 24.07 0.00 34.40 4.44
641 642 3.255379 CGCGGAAGAGCTAACGGC 61.255 66.667 0.00 0.00 42.19 5.68
687 688 3.250220 CGCTTGTCCGCTTTTTGTT 57.750 47.368 0.00 0.00 0.00 2.83
688 689 1.120437 CGCTTGTCCGCTTTTTGTTC 58.880 50.000 0.00 0.00 0.00 3.18
689 690 1.268539 CGCTTGTCCGCTTTTTGTTCT 60.269 47.619 0.00 0.00 0.00 3.01
690 691 2.794631 CGCTTGTCCGCTTTTTGTTCTT 60.795 45.455 0.00 0.00 0.00 2.52
691 692 2.535574 GCTTGTCCGCTTTTTGTTCTTG 59.464 45.455 0.00 0.00 0.00 3.02
692 693 3.769536 CTTGTCCGCTTTTTGTTCTTGT 58.230 40.909 0.00 0.00 0.00 3.16
693 694 3.143807 TGTCCGCTTTTTGTTCTTGTG 57.856 42.857 0.00 0.00 0.00 3.33
694 695 2.490115 TGTCCGCTTTTTGTTCTTGTGT 59.510 40.909 0.00 0.00 0.00 3.72
695 696 2.851824 GTCCGCTTTTTGTTCTTGTGTG 59.148 45.455 0.00 0.00 0.00 3.82
696 697 2.490115 TCCGCTTTTTGTTCTTGTGTGT 59.510 40.909 0.00 0.00 0.00 3.72
697 698 3.057174 TCCGCTTTTTGTTCTTGTGTGTT 60.057 39.130 0.00 0.00 0.00 3.32
698 699 3.060628 CCGCTTTTTGTTCTTGTGTGTTG 59.939 43.478 0.00 0.00 0.00 3.33
699 700 3.060628 CGCTTTTTGTTCTTGTGTGTTGG 59.939 43.478 0.00 0.00 0.00 3.77
700 701 3.370672 GCTTTTTGTTCTTGTGTGTTGGG 59.629 43.478 0.00 0.00 0.00 4.12
701 702 4.565022 CTTTTTGTTCTTGTGTGTTGGGT 58.435 39.130 0.00 0.00 0.00 4.51
702 703 4.608948 TTTTGTTCTTGTGTGTTGGGTT 57.391 36.364 0.00 0.00 0.00 4.11
703 704 4.608948 TTTGTTCTTGTGTGTTGGGTTT 57.391 36.364 0.00 0.00 0.00 3.27
704 705 5.723672 TTTGTTCTTGTGTGTTGGGTTTA 57.276 34.783 0.00 0.00 0.00 2.01
705 706 5.923733 TTGTTCTTGTGTGTTGGGTTTAT 57.076 34.783 0.00 0.00 0.00 1.40
706 707 5.508200 TGTTCTTGTGTGTTGGGTTTATC 57.492 39.130 0.00 0.00 0.00 1.75
707 708 4.339814 TGTTCTTGTGTGTTGGGTTTATCC 59.660 41.667 0.00 0.00 0.00 2.59
708 709 4.171878 TCTTGTGTGTTGGGTTTATCCA 57.828 40.909 0.00 0.00 38.11 3.41
709 710 4.537751 TCTTGTGTGTTGGGTTTATCCAA 58.462 39.130 0.00 0.00 43.82 3.53
710 711 4.956700 TCTTGTGTGTTGGGTTTATCCAAA 59.043 37.500 0.00 0.00 46.98 3.28
711 712 4.657436 TGTGTGTTGGGTTTATCCAAAC 57.343 40.909 0.00 0.00 46.98 2.93
715 716 3.191735 GTTGGGTTTATCCAAACGTCG 57.808 47.619 0.00 0.00 46.98 5.12
716 717 1.158434 TGGGTTTATCCAAACGTCGC 58.842 50.000 0.00 0.00 44.20 5.19
717 718 0.095762 GGGTTTATCCAAACGTCGCG 59.904 55.000 0.00 0.00 44.20 5.87
718 719 0.519792 GGTTTATCCAAACGTCGCGC 60.520 55.000 0.00 0.00 44.20 6.86
735 736 4.436998 CGTGTCCGCCTCAGGTCC 62.437 72.222 0.00 0.00 0.00 4.46
736 737 4.436998 GTGTCCGCCTCAGGTCCG 62.437 72.222 0.00 0.00 0.00 4.79
739 740 4.435970 TCCGCCTCAGGTCCGCTA 62.436 66.667 0.00 0.00 0.00 4.26
740 741 3.905678 CCGCCTCAGGTCCGCTAG 61.906 72.222 0.00 0.00 0.00 3.42
741 742 3.905678 CGCCTCAGGTCCGCTAGG 61.906 72.222 0.00 3.49 39.46 3.02
753 754 4.549516 GCTAGGCGGACGGACGAC 62.550 72.222 5.17 1.68 43.75 4.34
754 755 3.885521 CTAGGCGGACGGACGACC 61.886 72.222 3.11 0.12 44.75 4.79
758 759 4.668118 GCGGACGGACGACCCAAA 62.668 66.667 7.57 0.00 35.47 3.28
759 760 2.735857 CGGACGGACGACCCAAAC 60.736 66.667 7.57 0.00 35.47 2.93
760 761 2.735857 GGACGGACGACCCAAACG 60.736 66.667 0.00 0.00 34.14 3.60
761 762 2.735857 GACGGACGACCCAAACGG 60.736 66.667 0.00 0.00 37.81 4.44
762 763 3.211564 GACGGACGACCCAAACGGA 62.212 63.158 0.00 0.00 34.64 4.69
763 764 2.735857 CGGACGACCCAAACGGAC 60.736 66.667 0.00 0.00 34.64 4.79
764 765 2.422591 GGACGACCCAAACGGACA 59.577 61.111 0.00 0.00 34.64 4.02
765 766 1.227615 GGACGACCCAAACGGACAA 60.228 57.895 0.00 0.00 34.64 3.18
766 767 0.814812 GGACGACCCAAACGGACAAA 60.815 55.000 0.00 0.00 34.64 2.83
767 768 1.015868 GACGACCCAAACGGACAAAA 58.984 50.000 0.00 0.00 34.64 2.44
768 769 1.605232 GACGACCCAAACGGACAAAAT 59.395 47.619 0.00 0.00 34.64 1.82
769 770 1.335496 ACGACCCAAACGGACAAAATG 59.665 47.619 0.00 0.00 34.64 2.32
770 771 1.778334 GACCCAAACGGACAAAATGC 58.222 50.000 0.00 0.00 34.64 3.56
777 778 3.855630 CGGACAAAATGCGGACAAA 57.144 47.368 0.00 0.00 38.73 2.83
778 779 2.126914 CGGACAAAATGCGGACAAAA 57.873 45.000 0.00 0.00 38.73 2.44
779 780 2.671596 CGGACAAAATGCGGACAAAAT 58.328 42.857 0.00 0.00 38.73 1.82
780 781 2.661195 CGGACAAAATGCGGACAAAATC 59.339 45.455 0.00 0.00 38.73 2.17
781 782 2.993220 GGACAAAATGCGGACAAAATCC 59.007 45.455 0.00 0.00 45.20 3.01
791 792 0.794473 GACAAAATCCGTGTCCGTCC 59.206 55.000 0.00 0.00 39.62 4.79
792 793 0.395312 ACAAAATCCGTGTCCGTCCT 59.605 50.000 0.00 0.00 0.00 3.85
793 794 1.202722 ACAAAATCCGTGTCCGTCCTT 60.203 47.619 0.00 0.00 0.00 3.36
794 795 1.196808 CAAAATCCGTGTCCGTCCTTG 59.803 52.381 0.00 0.00 0.00 3.61
795 796 0.321298 AAATCCGTGTCCGTCCTTGG 60.321 55.000 0.00 0.00 0.00 3.61
796 797 1.189524 AATCCGTGTCCGTCCTTGGA 61.190 55.000 0.00 0.00 35.04 3.53
797 798 1.605058 ATCCGTGTCCGTCCTTGGAG 61.605 60.000 0.00 0.00 39.14 3.86
798 799 2.571216 CCGTGTCCGTCCTTGGAGT 61.571 63.158 0.00 0.00 39.14 3.85
799 800 1.366366 CGTGTCCGTCCTTGGAGTT 59.634 57.895 0.00 0.00 39.14 3.01
800 801 0.944311 CGTGTCCGTCCTTGGAGTTG 60.944 60.000 0.00 0.00 39.14 3.16
801 802 1.070786 TGTCCGTCCTTGGAGTTGC 59.929 57.895 0.00 0.00 39.14 4.17
802 803 1.371558 GTCCGTCCTTGGAGTTGCT 59.628 57.895 0.00 0.00 39.14 3.91
803 804 0.250338 GTCCGTCCTTGGAGTTGCTT 60.250 55.000 0.00 0.00 39.14 3.91
804 805 0.034896 TCCGTCCTTGGAGTTGCTTC 59.965 55.000 0.00 0.00 33.05 3.86
805 806 0.250295 CCGTCCTTGGAGTTGCTTCA 60.250 55.000 0.00 0.00 0.00 3.02
806 807 1.611673 CCGTCCTTGGAGTTGCTTCAT 60.612 52.381 0.00 0.00 0.00 2.57
807 808 1.466167 CGTCCTTGGAGTTGCTTCATG 59.534 52.381 0.00 0.00 0.00 3.07
808 809 2.508526 GTCCTTGGAGTTGCTTCATGT 58.491 47.619 0.00 0.00 0.00 3.21
809 810 2.227388 GTCCTTGGAGTTGCTTCATGTG 59.773 50.000 0.00 0.00 0.00 3.21
810 811 2.106338 TCCTTGGAGTTGCTTCATGTGA 59.894 45.455 0.00 0.00 0.00 3.58
811 812 2.486982 CCTTGGAGTTGCTTCATGTGAG 59.513 50.000 0.00 0.00 0.00 3.51
812 813 2.189594 TGGAGTTGCTTCATGTGAGG 57.810 50.000 0.00 0.00 0.00 3.86
813 814 1.699083 TGGAGTTGCTTCATGTGAGGA 59.301 47.619 0.00 0.00 0.00 3.71
814 815 2.106338 TGGAGTTGCTTCATGTGAGGAA 59.894 45.455 0.00 0.00 0.00 3.36
815 816 3.149196 GGAGTTGCTTCATGTGAGGAAA 58.851 45.455 7.19 0.00 0.00 3.13
816 817 3.569701 GGAGTTGCTTCATGTGAGGAAAA 59.430 43.478 7.19 0.00 0.00 2.29
817 818 4.037923 GGAGTTGCTTCATGTGAGGAAAAA 59.962 41.667 7.19 0.00 0.00 1.94
818 819 5.279156 GGAGTTGCTTCATGTGAGGAAAAAT 60.279 40.000 7.19 0.00 0.00 1.82
819 820 5.535333 AGTTGCTTCATGTGAGGAAAAATG 58.465 37.500 7.19 0.00 0.00 2.32
820 821 4.524316 TGCTTCATGTGAGGAAAAATGG 57.476 40.909 0.00 0.00 0.00 3.16
821 822 3.256558 GCTTCATGTGAGGAAAAATGGC 58.743 45.455 0.00 0.00 0.00 4.40
822 823 3.056322 GCTTCATGTGAGGAAAAATGGCT 60.056 43.478 0.00 0.00 0.00 4.75
823 824 4.158394 GCTTCATGTGAGGAAAAATGGCTA 59.842 41.667 0.00 0.00 0.00 3.93
824 825 5.336690 GCTTCATGTGAGGAAAAATGGCTAA 60.337 40.000 0.00 0.00 0.00 3.09
825 826 5.643379 TCATGTGAGGAAAAATGGCTAAC 57.357 39.130 0.00 0.00 0.00 2.34
826 827 5.324409 TCATGTGAGGAAAAATGGCTAACT 58.676 37.500 0.00 0.00 0.00 2.24
827 828 5.183713 TCATGTGAGGAAAAATGGCTAACTG 59.816 40.000 0.00 0.00 0.00 3.16
828 829 4.724399 TGTGAGGAAAAATGGCTAACTGA 58.276 39.130 0.00 0.00 0.00 3.41
829 830 5.136828 TGTGAGGAAAAATGGCTAACTGAA 58.863 37.500 0.00 0.00 0.00 3.02
830 831 5.596361 TGTGAGGAAAAATGGCTAACTGAAA 59.404 36.000 0.00 0.00 0.00 2.69
831 832 6.097554 TGTGAGGAAAAATGGCTAACTGAAAA 59.902 34.615 0.00 0.00 0.00 2.29
832 833 7.154656 GTGAGGAAAAATGGCTAACTGAAAAT 58.845 34.615 0.00 0.00 0.00 1.82
833 834 7.657354 GTGAGGAAAAATGGCTAACTGAAAATT 59.343 33.333 0.00 0.00 0.00 1.82
834 835 7.872483 TGAGGAAAAATGGCTAACTGAAAATTC 59.128 33.333 0.00 0.00 0.00 2.17
835 836 7.734942 AGGAAAAATGGCTAACTGAAAATTCA 58.265 30.769 0.00 0.00 35.57 2.57
836 837 8.210265 AGGAAAAATGGCTAACTGAAAATTCAA 58.790 29.630 0.00 0.00 36.64 2.69
837 838 8.835439 GGAAAAATGGCTAACTGAAAATTCAAA 58.165 29.630 0.00 0.00 36.64 2.69
838 839 9.868389 GAAAAATGGCTAACTGAAAATTCAAAG 57.132 29.630 0.00 0.00 36.64 2.77
839 840 7.967890 AAATGGCTAACTGAAAATTCAAAGG 57.032 32.000 0.00 0.00 36.64 3.11
840 841 6.916360 ATGGCTAACTGAAAATTCAAAGGA 57.084 33.333 0.00 0.00 36.64 3.36
841 842 6.723298 TGGCTAACTGAAAATTCAAAGGAA 57.277 33.333 0.00 0.00 36.64 3.36
842 843 6.748132 TGGCTAACTGAAAATTCAAAGGAAG 58.252 36.000 0.00 0.00 36.64 3.46
843 844 6.549364 TGGCTAACTGAAAATTCAAAGGAAGA 59.451 34.615 0.00 0.00 36.64 2.87
844 845 6.863645 GGCTAACTGAAAATTCAAAGGAAGAC 59.136 38.462 0.00 0.00 36.64 3.01
845 846 7.425606 GCTAACTGAAAATTCAAAGGAAGACA 58.574 34.615 0.00 0.00 36.64 3.41
846 847 7.920682 GCTAACTGAAAATTCAAAGGAAGACAA 59.079 33.333 0.00 0.00 36.64 3.18
847 848 9.801873 CTAACTGAAAATTCAAAGGAAGACAAA 57.198 29.630 0.00 0.00 36.64 2.83
848 849 8.479313 AACTGAAAATTCAAAGGAAGACAAAC 57.521 30.769 0.00 0.00 36.64 2.93
849 850 7.041721 ACTGAAAATTCAAAGGAAGACAAACC 58.958 34.615 0.00 0.00 36.64 3.27
850 851 6.940739 TGAAAATTCAAAGGAAGACAAACCA 58.059 32.000 0.00 0.00 36.25 3.67
851 852 7.390027 TGAAAATTCAAAGGAAGACAAACCAA 58.610 30.769 0.00 0.00 36.25 3.67
852 853 7.880195 TGAAAATTCAAAGGAAGACAAACCAAA 59.120 29.630 0.00 0.00 36.25 3.28
853 854 8.806429 AAAATTCAAAGGAAGACAAACCAAAT 57.194 26.923 0.00 0.00 36.25 2.32
854 855 8.437360 AAATTCAAAGGAAGACAAACCAAATC 57.563 30.769 0.00 0.00 36.25 2.17
855 856 5.181690 TCAAAGGAAGACAAACCAAATCG 57.818 39.130 0.00 0.00 0.00 3.34
856 857 4.037446 TCAAAGGAAGACAAACCAAATCGG 59.963 41.667 0.00 0.00 42.50 4.18
857 858 3.502123 AGGAAGACAAACCAAATCGGA 57.498 42.857 0.00 0.00 38.63 4.55
858 859 3.412386 AGGAAGACAAACCAAATCGGAG 58.588 45.455 0.00 0.00 38.63 4.63
877 878 4.872691 CGGAGAGAAATACAAGAGCACAAT 59.127 41.667 0.00 0.00 0.00 2.71
878 879 5.220548 CGGAGAGAAATACAAGAGCACAATG 60.221 44.000 0.00 0.00 0.00 2.82
879 880 5.877012 GGAGAGAAATACAAGAGCACAATGA 59.123 40.000 0.00 0.00 0.00 2.57
880 881 6.372659 GGAGAGAAATACAAGAGCACAATGAA 59.627 38.462 0.00 0.00 0.00 2.57
882 883 8.345724 AGAGAAATACAAGAGCACAATGAATT 57.654 30.769 0.00 0.00 0.00 2.17
883 884 8.800332 AGAGAAATACAAGAGCACAATGAATTT 58.200 29.630 0.00 0.00 0.00 1.82
884 885 9.415544 GAGAAATACAAGAGCACAATGAATTTT 57.584 29.630 0.00 0.00 0.00 1.82
887 888 9.643693 AAATACAAGAGCACAATGAATTTTAGG 57.356 29.630 0.00 0.00 0.00 2.69
888 889 6.029346 ACAAGAGCACAATGAATTTTAGGG 57.971 37.500 0.00 0.00 0.00 3.53
889 890 5.539955 ACAAGAGCACAATGAATTTTAGGGT 59.460 36.000 0.00 0.00 0.00 4.34
892 893 7.775053 AGAGCACAATGAATTTTAGGGTAAA 57.225 32.000 0.00 0.00 0.00 2.01
893 894 7.830739 AGAGCACAATGAATTTTAGGGTAAAG 58.169 34.615 0.00 0.00 0.00 1.85
894 895 7.669722 AGAGCACAATGAATTTTAGGGTAAAGA 59.330 33.333 0.00 0.00 0.00 2.52
897 898 9.267084 GCACAATGAATTTTAGGGTAAAGAAAA 57.733 29.630 0.00 0.00 0.00 2.29
936 937 1.141881 CGAGCTGTAGCCAACCGAT 59.858 57.895 0.00 0.00 43.38 4.18
1442 1452 0.652592 CCTTAGATTGTTGCGCTCGG 59.347 55.000 9.73 0.00 0.00 4.63
1514 1525 5.273944 GGGAACTGATTTATGTTCGATTGC 58.726 41.667 0.00 0.00 42.28 3.56
1618 1629 2.301870 TGGCGATACCAGAGAAACAGTT 59.698 45.455 0.00 0.00 46.36 3.16
1619 1630 3.244422 TGGCGATACCAGAGAAACAGTTT 60.244 43.478 0.00 0.00 46.36 2.66
1620 1631 3.125316 GGCGATACCAGAGAAACAGTTTG 59.875 47.826 2.34 0.00 38.86 2.93
1673 1684 6.058833 TGCTGTTATCCAACTTTTGAGTGTA 58.941 36.000 0.00 0.00 35.56 2.90
1736 1747 7.086685 TCCTTAAAGTGTTGGTAGAAAGGAT 57.913 36.000 0.00 0.00 37.05 3.24
1737 1748 7.166167 TCCTTAAAGTGTTGGTAGAAAGGATC 58.834 38.462 0.00 0.00 37.05 3.36
1740 1751 4.974645 AGTGTTGGTAGAAAGGATCACA 57.025 40.909 0.00 0.00 0.00 3.58
1813 1824 5.112686 GGGATTGAGTCACAGTGAGATTAC 58.887 45.833 2.53 0.00 0.00 1.89
1848 1859 9.929180 TCTATAATAATAGTTGTCATGAGGTGC 57.071 33.333 0.00 0.00 37.06 5.01
1858 1869 4.260985 TGTCATGAGGTGCGAATGTTATT 58.739 39.130 0.00 0.00 0.00 1.40
1894 1905 4.081309 AGTCTTAAACGGGTGCTTAGCATA 60.081 41.667 11.03 0.00 41.91 3.14
1999 2010 8.856490 ATCTTCGTATTATTTTTGGCATTGTC 57.144 30.769 0.00 0.00 0.00 3.18
2027 2038 6.099845 GGTCCCTTCTTCTGGTAGATAAATGA 59.900 42.308 0.00 0.00 0.00 2.57
2101 2116 2.850130 ACCCACTGCCCCGTGTTA 60.850 61.111 0.00 0.00 33.07 2.41
2124 2139 2.434428 CTTTTGCTGGTCATGAGCTCT 58.566 47.619 24.30 0.00 37.35 4.09
2201 2216 2.227865 ACGGTGTGTTTGTATTGATGGC 59.772 45.455 0.00 0.00 0.00 4.40
2213 2228 4.771577 TGTATTGATGGCCATGTTCAAACT 59.228 37.500 26.56 10.70 33.45 2.66
2227 2242 6.882610 TGTTCAAACTGAATGTAGCTTGAT 57.117 33.333 0.00 0.00 38.79 2.57
2375 2390 6.714810 GTCCAATGGTGGCATATGTAATAGAA 59.285 38.462 4.29 0.00 45.54 2.10
2379 2394 9.453572 CAATGGTGGCATATGTAATAGAACTAT 57.546 33.333 4.29 0.00 28.50 2.12
2434 2450 6.218025 TGCATGTTTGTACTAGTAAACACG 57.782 37.500 20.82 16.04 46.01 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.279069 CGGAGATATCCCCGCTGCT 61.279 63.158 13.10 0.00 39.22 4.24
2 3 2.262915 CGGAGATATCCCCGCTGC 59.737 66.667 13.10 0.00 39.22 5.25
3 4 1.179174 TGTCGGAGATATCCCCGCTG 61.179 60.000 20.02 3.30 44.96 5.18
4 5 0.896019 CTGTCGGAGATATCCCCGCT 60.896 60.000 20.02 0.00 44.96 5.52
5 6 1.587054 CTGTCGGAGATATCCCCGC 59.413 63.158 20.02 15.10 44.96 6.13
6 7 0.539901 ACCTGTCGGAGATATCCCCG 60.540 60.000 18.89 18.89 46.57 5.73
7 8 1.344763 CAACCTGTCGGAGATATCCCC 59.655 57.143 0.00 0.00 40.67 4.81
8 9 1.344763 CCAACCTGTCGGAGATATCCC 59.655 57.143 0.00 0.00 40.67 3.85
9 10 2.317040 TCCAACCTGTCGGAGATATCC 58.683 52.381 0.00 0.00 40.67 2.59
16 17 3.787394 GGTCTCCAACCTGTCGGA 58.213 61.111 0.00 0.00 45.45 4.55
24 25 1.067495 CAGTTCCTCGAGGTCTCCAAC 60.067 57.143 30.17 24.47 36.34 3.77
25 26 1.257743 CAGTTCCTCGAGGTCTCCAA 58.742 55.000 30.17 14.62 36.34 3.53
26 27 1.251527 GCAGTTCCTCGAGGTCTCCA 61.252 60.000 30.17 8.66 36.34 3.86
27 28 1.251527 TGCAGTTCCTCGAGGTCTCC 61.252 60.000 30.17 19.49 36.34 3.71
28 29 0.172352 CTGCAGTTCCTCGAGGTCTC 59.828 60.000 30.17 20.13 36.34 3.36
29 30 1.254284 CCTGCAGTTCCTCGAGGTCT 61.254 60.000 30.17 24.43 36.34 3.85
30 31 1.216710 CCTGCAGTTCCTCGAGGTC 59.783 63.158 30.17 22.76 36.34 3.85
31 32 2.948720 GCCTGCAGTTCCTCGAGGT 61.949 63.158 30.17 9.49 36.34 3.85
32 33 2.125350 GCCTGCAGTTCCTCGAGG 60.125 66.667 26.32 26.32 0.00 4.63
33 34 2.507992 CGCCTGCAGTTCCTCGAG 60.508 66.667 13.81 5.13 0.00 4.04
34 35 4.742201 GCGCCTGCAGTTCCTCGA 62.742 66.667 13.81 0.00 42.15 4.04
45 46 3.490759 GTCCATGTCGTGCGCCTG 61.491 66.667 4.18 0.00 0.00 4.85
48 49 3.838795 GACGTCCATGTCGTGCGC 61.839 66.667 15.81 0.00 41.64 6.09
49 50 1.674611 GAAGACGTCCATGTCGTGCG 61.675 60.000 13.01 4.46 43.70 5.34
50 51 1.674611 CGAAGACGTCCATGTCGTGC 61.675 60.000 13.01 8.95 43.70 5.34
51 52 1.071019 CCGAAGACGTCCATGTCGTG 61.071 60.000 13.01 7.16 43.70 4.35
52 53 1.211969 CCGAAGACGTCCATGTCGT 59.788 57.895 13.01 11.85 43.70 4.34
53 54 2.158959 GCCGAAGACGTCCATGTCG 61.159 63.158 13.01 15.51 43.70 4.35
54 55 2.158959 CGCCGAAGACGTCCATGTC 61.159 63.158 13.01 4.06 39.21 3.06
55 56 2.126071 CGCCGAAGACGTCCATGT 60.126 61.111 13.01 0.00 37.88 3.21
56 57 3.554692 GCGCCGAAGACGTCCATG 61.555 66.667 13.01 1.42 37.88 3.66
57 58 4.814294 GGCGCCGAAGACGTCCAT 62.814 66.667 12.58 0.63 37.88 3.41
70 71 3.056328 AAAAAGGAGGAGCGGCGC 61.056 61.111 26.86 26.86 0.00 6.53
71 72 2.870372 CAAAAAGGAGGAGCGGCG 59.130 61.111 0.51 0.51 0.00 6.46
72 73 1.527433 AAGCAAAAAGGAGGAGCGGC 61.527 55.000 0.00 0.00 0.00 6.53
73 74 0.242017 CAAGCAAAAAGGAGGAGCGG 59.758 55.000 0.00 0.00 0.00 5.52
74 75 0.954452 ACAAGCAAAAAGGAGGAGCG 59.046 50.000 0.00 0.00 0.00 5.03
75 76 1.603931 GCACAAGCAAAAAGGAGGAGC 60.604 52.381 0.00 0.00 41.58 4.70
76 77 1.335324 CGCACAAGCAAAAAGGAGGAG 60.335 52.381 0.00 0.00 42.27 3.69
77 78 0.667993 CGCACAAGCAAAAAGGAGGA 59.332 50.000 0.00 0.00 42.27 3.71
78 79 0.667993 TCGCACAAGCAAAAAGGAGG 59.332 50.000 0.00 0.00 42.27 4.30
79 80 1.927710 GCTCGCACAAGCAAAAAGGAG 60.928 52.381 0.00 0.00 42.05 3.69
80 81 0.030638 GCTCGCACAAGCAAAAAGGA 59.969 50.000 0.00 0.00 42.05 3.36
81 82 1.270777 CGCTCGCACAAGCAAAAAGG 61.271 55.000 3.94 0.00 42.62 3.11
82 83 1.270777 CCGCTCGCACAAGCAAAAAG 61.271 55.000 3.94 0.00 42.62 2.27
83 84 1.299014 CCGCTCGCACAAGCAAAAA 60.299 52.632 3.94 0.00 42.62 1.94
84 85 2.331098 CCGCTCGCACAAGCAAAA 59.669 55.556 3.94 0.00 42.62 2.44
85 86 4.326766 GCCGCTCGCACAAGCAAA 62.327 61.111 3.94 0.00 42.62 3.68
89 90 2.432456 TACTGCCGCTCGCACAAG 60.432 61.111 0.00 0.00 44.64 3.16
90 91 2.432456 CTACTGCCGCTCGCACAA 60.432 61.111 0.00 0.00 44.64 3.33
92 93 4.803426 AGCTACTGCCGCTCGCAC 62.803 66.667 0.00 0.00 44.64 5.34
94 95 4.803426 ACAGCTACTGCCGCTCGC 62.803 66.667 0.00 0.00 40.80 5.03
95 96 2.125912 AACAGCTACTGCCGCTCG 60.126 61.111 0.00 0.00 40.80 5.03
96 97 0.951040 AACAACAGCTACTGCCGCTC 60.951 55.000 0.00 0.00 40.80 5.03
97 98 0.320374 TAACAACAGCTACTGCCGCT 59.680 50.000 0.00 0.00 40.80 5.52
98 99 0.442699 GTAACAACAGCTACTGCCGC 59.557 55.000 0.00 0.00 40.80 6.53
99 100 2.080286 AGTAACAACAGCTACTGCCG 57.920 50.000 0.00 0.00 40.80 5.69
100 101 3.371285 GCTAAGTAACAACAGCTACTGCC 59.629 47.826 0.00 0.00 40.80 4.85
101 102 4.092091 CAGCTAAGTAACAACAGCTACTGC 59.908 45.833 0.00 0.00 42.33 4.40
102 103 4.627467 CCAGCTAAGTAACAACAGCTACTG 59.373 45.833 0.00 0.00 42.33 2.74
103 104 4.527038 TCCAGCTAAGTAACAACAGCTACT 59.473 41.667 0.00 0.00 42.33 2.57
104 105 4.817517 TCCAGCTAAGTAACAACAGCTAC 58.182 43.478 0.00 0.00 42.33 3.58
105 106 4.081642 CCTCCAGCTAAGTAACAACAGCTA 60.082 45.833 0.00 0.00 42.33 3.32
106 107 3.307059 CCTCCAGCTAAGTAACAACAGCT 60.307 47.826 0.00 0.00 45.01 4.24
107 108 3.003480 CCTCCAGCTAAGTAACAACAGC 58.997 50.000 0.00 0.00 0.00 4.40
108 109 4.021016 ACTCCTCCAGCTAAGTAACAACAG 60.021 45.833 0.00 0.00 0.00 3.16
109 110 3.901844 ACTCCTCCAGCTAAGTAACAACA 59.098 43.478 0.00 0.00 0.00 3.33
110 111 4.021368 TCACTCCTCCAGCTAAGTAACAAC 60.021 45.833 0.00 0.00 0.00 3.32
111 112 4.157246 TCACTCCTCCAGCTAAGTAACAA 58.843 43.478 0.00 0.00 0.00 2.83
112 113 3.774734 TCACTCCTCCAGCTAAGTAACA 58.225 45.455 0.00 0.00 0.00 2.41
113 114 4.749976 CTTCACTCCTCCAGCTAAGTAAC 58.250 47.826 0.00 0.00 0.00 2.50
114 115 3.195825 GCTTCACTCCTCCAGCTAAGTAA 59.804 47.826 0.00 0.00 0.00 2.24
115 116 2.761208 GCTTCACTCCTCCAGCTAAGTA 59.239 50.000 0.00 0.00 0.00 2.24
116 117 1.552792 GCTTCACTCCTCCAGCTAAGT 59.447 52.381 0.00 0.00 0.00 2.24
117 118 1.134551 GGCTTCACTCCTCCAGCTAAG 60.135 57.143 0.00 0.00 32.52 2.18
118 119 0.905357 GGCTTCACTCCTCCAGCTAA 59.095 55.000 0.00 0.00 32.52 3.09
119 120 0.978146 GGGCTTCACTCCTCCAGCTA 60.978 60.000 0.00 0.00 32.52 3.32
120 121 2.297129 GGGCTTCACTCCTCCAGCT 61.297 63.158 0.00 0.00 32.52 4.24
121 122 2.270527 GGGCTTCACTCCTCCAGC 59.729 66.667 0.00 0.00 0.00 4.85
122 123 2.581354 CGGGCTTCACTCCTCCAG 59.419 66.667 0.00 0.00 0.00 3.86
123 124 3.003173 CCGGGCTTCACTCCTCCA 61.003 66.667 0.00 0.00 0.00 3.86
124 125 2.683933 TCCGGGCTTCACTCCTCC 60.684 66.667 0.00 0.00 0.00 4.30
125 126 2.896443 CTCCGGGCTTCACTCCTC 59.104 66.667 0.00 0.00 0.00 3.71
126 127 3.394836 GCTCCGGGCTTCACTCCT 61.395 66.667 0.00 0.00 38.06 3.69
127 128 4.475135 GGCTCCGGGCTTCACTCC 62.475 72.222 13.58 0.00 41.46 3.85
128 129 4.821589 CGGCTCCGGGCTTCACTC 62.822 72.222 13.58 0.00 41.46 3.51
139 140 3.736482 CTACACGTCGAGCGGCTCC 62.736 68.421 23.36 10.04 46.52 4.70
140 141 2.277373 CTACACGTCGAGCGGCTC 60.277 66.667 19.92 19.92 46.52 4.70
141 142 2.745100 TCTACACGTCGAGCGGCT 60.745 61.111 0.00 0.00 46.52 5.52
142 143 2.576317 GTCTACACGTCGAGCGGC 60.576 66.667 0.00 0.00 46.52 6.53
143 144 2.099831 GGTCTACACGTCGAGCGG 59.900 66.667 0.00 4.22 46.52 5.52
145 146 2.576317 GCGGTCTACACGTCGAGC 60.576 66.667 0.00 0.00 0.00 5.03
146 147 2.276493 CGCGGTCTACACGTCGAG 60.276 66.667 0.00 0.00 34.54 4.04
147 148 3.792047 CCGCGGTCTACACGTCGA 61.792 66.667 19.50 0.00 34.54 4.20
570 571 4.880537 CTCCGCCGCAGTAGCCTG 62.881 72.222 0.00 0.00 41.91 4.85
573 574 4.577246 CTCCTCCGCCGCAGTAGC 62.577 72.222 0.00 0.00 37.42 3.58
574 575 3.905678 CCTCCTCCGCCGCAGTAG 61.906 72.222 0.00 0.00 0.00 2.57
575 576 4.435970 TCCTCCTCCGCCGCAGTA 62.436 66.667 0.00 0.00 0.00 2.74
620 621 4.508128 TTAGCTCTTCCGCGGCCG 62.508 66.667 24.05 24.05 34.40 6.13
621 622 2.890961 GTTAGCTCTTCCGCGGCC 60.891 66.667 23.51 5.85 34.40 6.13
622 623 3.255379 CGTTAGCTCTTCCGCGGC 61.255 66.667 23.51 8.49 34.40 6.53
623 624 2.582498 CCGTTAGCTCTTCCGCGG 60.582 66.667 22.12 22.12 34.40 6.46
624 625 3.255379 GCCGTTAGCTCTTCCGCG 61.255 66.667 0.00 0.00 38.99 6.46
625 626 3.255379 CGCCGTTAGCTCTTCCGC 61.255 66.667 0.00 0.00 40.39 5.54
626 627 2.582498 CCGCCGTTAGCTCTTCCG 60.582 66.667 0.00 0.00 40.39 4.30
627 628 2.202892 CCCGCCGTTAGCTCTTCC 60.203 66.667 0.00 0.00 40.39 3.46
628 629 2.890961 GCCCGCCGTTAGCTCTTC 60.891 66.667 0.00 0.00 40.39 2.87
629 630 4.468689 GGCCCGCCGTTAGCTCTT 62.469 66.667 0.00 0.00 40.39 2.85
663 664 3.941657 AAGCGGACAAGCGCTCCTC 62.942 63.158 12.06 8.19 40.89 3.71
664 665 3.537206 AAAGCGGACAAGCGCTCCT 62.537 57.895 12.06 0.00 40.89 3.69
665 666 2.130073 AAAAAGCGGACAAGCGCTCC 62.130 55.000 12.06 7.35 40.89 4.70
666 667 0.998727 CAAAAAGCGGACAAGCGCTC 60.999 55.000 12.06 0.00 40.89 5.03
667 668 1.008538 CAAAAAGCGGACAAGCGCT 60.009 52.632 2.64 2.64 43.88 5.92
668 669 0.869880 AACAAAAAGCGGACAAGCGC 60.870 50.000 0.00 0.00 43.00 5.92
669 670 1.120437 GAACAAAAAGCGGACAAGCG 58.880 50.000 0.00 0.00 43.00 4.68
670 671 2.492019 AGAACAAAAAGCGGACAAGC 57.508 45.000 0.00 0.00 37.41 4.01
671 672 3.547468 CACAAGAACAAAAAGCGGACAAG 59.453 43.478 0.00 0.00 0.00 3.16
672 673 3.057174 ACACAAGAACAAAAAGCGGACAA 60.057 39.130 0.00 0.00 0.00 3.18
673 674 2.490115 ACACAAGAACAAAAAGCGGACA 59.510 40.909 0.00 0.00 0.00 4.02
674 675 2.851824 CACACAAGAACAAAAAGCGGAC 59.148 45.455 0.00 0.00 0.00 4.79
675 676 2.490115 ACACACAAGAACAAAAAGCGGA 59.510 40.909 0.00 0.00 0.00 5.54
676 677 2.874849 ACACACAAGAACAAAAAGCGG 58.125 42.857 0.00 0.00 0.00 5.52
677 678 3.060628 CCAACACACAAGAACAAAAAGCG 59.939 43.478 0.00 0.00 0.00 4.68
678 679 3.370672 CCCAACACACAAGAACAAAAAGC 59.629 43.478 0.00 0.00 0.00 3.51
679 680 4.565022 ACCCAACACACAAGAACAAAAAG 58.435 39.130 0.00 0.00 0.00 2.27
680 681 4.608948 ACCCAACACACAAGAACAAAAA 57.391 36.364 0.00 0.00 0.00 1.94
681 682 4.608948 AACCCAACACACAAGAACAAAA 57.391 36.364 0.00 0.00 0.00 2.44
682 683 4.608948 AAACCCAACACACAAGAACAAA 57.391 36.364 0.00 0.00 0.00 2.83
683 684 5.163499 GGATAAACCCAACACACAAGAACAA 60.163 40.000 0.00 0.00 0.00 2.83
684 685 4.339814 GGATAAACCCAACACACAAGAACA 59.660 41.667 0.00 0.00 0.00 3.18
685 686 4.339814 TGGATAAACCCAACACACAAGAAC 59.660 41.667 0.00 0.00 38.00 3.01
686 687 4.537751 TGGATAAACCCAACACACAAGAA 58.462 39.130 0.00 0.00 38.00 2.52
687 688 4.171878 TGGATAAACCCAACACACAAGA 57.828 40.909 0.00 0.00 38.00 3.02
688 689 4.927978 TTGGATAAACCCAACACACAAG 57.072 40.909 0.00 0.00 40.99 3.16
689 690 4.440250 CGTTTGGATAAACCCAACACACAA 60.440 41.667 0.00 0.00 45.13 3.33
690 691 3.066900 CGTTTGGATAAACCCAACACACA 59.933 43.478 0.00 0.00 45.13 3.72
691 692 3.067040 ACGTTTGGATAAACCCAACACAC 59.933 43.478 0.00 0.00 45.13 3.82
692 693 3.288964 ACGTTTGGATAAACCCAACACA 58.711 40.909 0.00 0.00 45.13 3.72
693 694 3.607542 CGACGTTTGGATAAACCCAACAC 60.608 47.826 0.00 0.00 45.13 3.32
694 695 2.548904 CGACGTTTGGATAAACCCAACA 59.451 45.455 0.00 0.00 45.13 3.33
695 696 2.666344 GCGACGTTTGGATAAACCCAAC 60.666 50.000 0.00 0.00 45.13 3.77
696 697 1.536331 GCGACGTTTGGATAAACCCAA 59.464 47.619 0.00 0.00 42.50 4.12
697 698 1.158434 GCGACGTTTGGATAAACCCA 58.842 50.000 0.00 0.00 42.50 4.51
698 699 0.095762 CGCGACGTTTGGATAAACCC 59.904 55.000 0.00 0.00 42.50 4.11
699 700 0.519792 GCGCGACGTTTGGATAAACC 60.520 55.000 12.10 0.00 42.50 3.27
700 701 0.850391 CGCGCGACGTTTGGATAAAC 60.850 55.000 28.94 0.00 42.14 2.01
701 702 1.416820 CGCGCGACGTTTGGATAAA 59.583 52.632 28.94 0.00 36.87 1.40
702 703 3.074296 CGCGCGACGTTTGGATAA 58.926 55.556 28.94 0.00 36.87 1.75
718 719 4.436998 GGACCTGAGGCGGACACG 62.437 72.222 0.00 0.00 44.63 4.49
719 720 4.436998 CGGACCTGAGGCGGACAC 62.437 72.222 0.00 0.00 0.00 3.67
722 723 4.435970 TAGCGGACCTGAGGCGGA 62.436 66.667 0.00 0.00 0.00 5.54
723 724 3.905678 CTAGCGGACCTGAGGCGG 61.906 72.222 0.00 0.00 0.00 6.13
724 725 3.905678 CCTAGCGGACCTGAGGCG 61.906 72.222 0.00 0.00 0.00 5.52
736 737 4.549516 GTCGTCCGTCCGCCTAGC 62.550 72.222 0.00 0.00 0.00 3.42
737 738 3.885521 GGTCGTCCGTCCGCCTAG 61.886 72.222 0.00 0.00 0.00 3.02
741 742 4.668118 TTTGGGTCGTCCGTCCGC 62.668 66.667 0.00 0.00 38.76 5.54
742 743 2.735857 GTTTGGGTCGTCCGTCCG 60.736 66.667 0.00 0.00 38.76 4.79
743 744 2.735857 CGTTTGGGTCGTCCGTCC 60.736 66.667 0.00 0.00 38.76 4.79
744 745 2.735857 CCGTTTGGGTCGTCCGTC 60.736 66.667 0.00 0.00 38.76 4.79
745 746 3.225798 TCCGTTTGGGTCGTCCGT 61.226 61.111 0.00 0.00 38.76 4.69
746 747 2.735857 GTCCGTTTGGGTCGTCCG 60.736 66.667 0.00 0.00 38.76 4.79
747 748 0.814812 TTTGTCCGTTTGGGTCGTCC 60.815 55.000 0.00 0.00 37.00 4.79
748 749 1.015868 TTTTGTCCGTTTGGGTCGTC 58.984 50.000 0.00 0.00 37.00 4.20
749 750 1.335496 CATTTTGTCCGTTTGGGTCGT 59.665 47.619 0.00 0.00 37.00 4.34
750 751 1.928595 GCATTTTGTCCGTTTGGGTCG 60.929 52.381 0.00 0.00 37.00 4.79
751 752 1.778334 GCATTTTGTCCGTTTGGGTC 58.222 50.000 0.00 0.00 37.00 4.46
752 753 0.031449 CGCATTTTGTCCGTTTGGGT 59.969 50.000 0.00 0.00 37.00 4.51
753 754 0.665972 CCGCATTTTGTCCGTTTGGG 60.666 55.000 0.00 0.00 35.24 4.12
754 755 0.312416 TCCGCATTTTGTCCGTTTGG 59.688 50.000 0.00 0.00 0.00 3.28
755 756 1.268794 TGTCCGCATTTTGTCCGTTTG 60.269 47.619 0.00 0.00 0.00 2.93
756 757 1.025812 TGTCCGCATTTTGTCCGTTT 58.974 45.000 0.00 0.00 0.00 3.60
757 758 1.025812 TTGTCCGCATTTTGTCCGTT 58.974 45.000 0.00 0.00 0.00 4.44
758 759 1.025812 TTTGTCCGCATTTTGTCCGT 58.974 45.000 0.00 0.00 0.00 4.69
759 760 2.126914 TTTTGTCCGCATTTTGTCCG 57.873 45.000 0.00 0.00 0.00 4.79
760 761 2.993220 GGATTTTGTCCGCATTTTGTCC 59.007 45.455 0.00 0.00 37.23 4.02
772 773 0.794473 GGACGGACACGGATTTTGTC 59.206 55.000 0.00 0.00 46.48 3.18
773 774 0.395312 AGGACGGACACGGATTTTGT 59.605 50.000 0.00 0.00 46.48 2.83
774 775 1.196808 CAAGGACGGACACGGATTTTG 59.803 52.381 0.00 0.00 46.48 2.44
775 776 1.519408 CAAGGACGGACACGGATTTT 58.481 50.000 0.00 0.00 46.48 1.82
776 777 0.321298 CCAAGGACGGACACGGATTT 60.321 55.000 0.00 0.00 46.48 2.17
777 778 1.189524 TCCAAGGACGGACACGGATT 61.190 55.000 0.00 0.00 46.48 3.01
778 779 1.605058 CTCCAAGGACGGACACGGAT 61.605 60.000 0.00 0.00 46.48 4.18
779 780 2.203523 TCCAAGGACGGACACGGA 60.204 61.111 0.00 0.00 46.48 4.69
780 781 2.095978 AACTCCAAGGACGGACACGG 62.096 60.000 0.00 0.00 46.48 4.94
782 783 1.228657 GCAACTCCAAGGACGGACAC 61.229 60.000 0.00 0.00 0.00 3.67
783 784 1.070786 GCAACTCCAAGGACGGACA 59.929 57.895 0.00 0.00 0.00 4.02
784 785 0.250338 AAGCAACTCCAAGGACGGAC 60.250 55.000 0.00 0.00 0.00 4.79
785 786 0.034896 GAAGCAACTCCAAGGACGGA 59.965 55.000 0.00 0.00 0.00 4.69
786 787 0.250295 TGAAGCAACTCCAAGGACGG 60.250 55.000 0.00 0.00 0.00 4.79
787 788 1.466167 CATGAAGCAACTCCAAGGACG 59.534 52.381 0.00 0.00 0.00 4.79
788 789 2.227388 CACATGAAGCAACTCCAAGGAC 59.773 50.000 0.00 0.00 0.00 3.85
789 790 2.106338 TCACATGAAGCAACTCCAAGGA 59.894 45.455 0.00 0.00 0.00 3.36
790 791 2.486982 CTCACATGAAGCAACTCCAAGG 59.513 50.000 0.00 0.00 0.00 3.61
791 792 2.486982 CCTCACATGAAGCAACTCCAAG 59.513 50.000 0.00 0.00 0.00 3.61
792 793 2.106338 TCCTCACATGAAGCAACTCCAA 59.894 45.455 0.00 0.00 0.00 3.53
793 794 1.699083 TCCTCACATGAAGCAACTCCA 59.301 47.619 0.00 0.00 0.00 3.86
794 795 2.479566 TCCTCACATGAAGCAACTCC 57.520 50.000 0.00 0.00 0.00 3.85
795 796 4.836125 TTTTCCTCACATGAAGCAACTC 57.164 40.909 0.00 0.00 0.00 3.01
796 797 5.510179 CCATTTTTCCTCACATGAAGCAACT 60.510 40.000 0.00 0.00 0.00 3.16
797 798 4.687483 CCATTTTTCCTCACATGAAGCAAC 59.313 41.667 0.00 0.00 0.00 4.17
798 799 4.800249 GCCATTTTTCCTCACATGAAGCAA 60.800 41.667 0.00 0.00 0.00 3.91
799 800 3.306225 GCCATTTTTCCTCACATGAAGCA 60.306 43.478 0.00 0.00 0.00 3.91
800 801 3.056322 AGCCATTTTTCCTCACATGAAGC 60.056 43.478 0.00 0.00 0.00 3.86
801 802 4.796038 AGCCATTTTTCCTCACATGAAG 57.204 40.909 0.00 0.00 0.00 3.02
802 803 5.774690 AGTTAGCCATTTTTCCTCACATGAA 59.225 36.000 0.00 0.00 0.00 2.57
803 804 5.183713 CAGTTAGCCATTTTTCCTCACATGA 59.816 40.000 0.00 0.00 0.00 3.07
804 805 5.183713 TCAGTTAGCCATTTTTCCTCACATG 59.816 40.000 0.00 0.00 0.00 3.21
805 806 5.324409 TCAGTTAGCCATTTTTCCTCACAT 58.676 37.500 0.00 0.00 0.00 3.21
806 807 4.724399 TCAGTTAGCCATTTTTCCTCACA 58.276 39.130 0.00 0.00 0.00 3.58
807 808 5.705609 TTCAGTTAGCCATTTTTCCTCAC 57.294 39.130 0.00 0.00 0.00 3.51
808 809 6.723298 TTTTCAGTTAGCCATTTTTCCTCA 57.277 33.333 0.00 0.00 0.00 3.86
809 810 7.872483 TGAATTTTCAGTTAGCCATTTTTCCTC 59.128 33.333 0.00 0.00 32.50 3.71
810 811 7.734942 TGAATTTTCAGTTAGCCATTTTTCCT 58.265 30.769 0.00 0.00 32.50 3.36
811 812 7.961325 TGAATTTTCAGTTAGCCATTTTTCC 57.039 32.000 0.00 0.00 32.50 3.13
812 813 9.868389 CTTTGAATTTTCAGTTAGCCATTTTTC 57.132 29.630 0.00 0.00 38.61 2.29
813 814 8.839343 CCTTTGAATTTTCAGTTAGCCATTTTT 58.161 29.630 0.00 0.00 38.61 1.94
814 815 8.210265 TCCTTTGAATTTTCAGTTAGCCATTTT 58.790 29.630 0.00 0.00 38.61 1.82
815 816 7.734942 TCCTTTGAATTTTCAGTTAGCCATTT 58.265 30.769 0.00 0.00 38.61 2.32
816 817 7.301868 TCCTTTGAATTTTCAGTTAGCCATT 57.698 32.000 0.00 0.00 38.61 3.16
817 818 6.916360 TCCTTTGAATTTTCAGTTAGCCAT 57.084 33.333 0.00 0.00 38.61 4.40
818 819 6.549364 TCTTCCTTTGAATTTTCAGTTAGCCA 59.451 34.615 0.00 0.00 38.61 4.75
819 820 6.863645 GTCTTCCTTTGAATTTTCAGTTAGCC 59.136 38.462 0.00 0.00 38.61 3.93
820 821 7.425606 TGTCTTCCTTTGAATTTTCAGTTAGC 58.574 34.615 0.00 0.00 38.61 3.09
821 822 9.801873 TTTGTCTTCCTTTGAATTTTCAGTTAG 57.198 29.630 0.00 0.00 38.61 2.34
822 823 9.581099 GTTTGTCTTCCTTTGAATTTTCAGTTA 57.419 29.630 0.00 0.00 38.61 2.24
823 824 7.549134 GGTTTGTCTTCCTTTGAATTTTCAGTT 59.451 33.333 0.00 0.00 38.61 3.16
824 825 7.041721 GGTTTGTCTTCCTTTGAATTTTCAGT 58.958 34.615 0.00 0.00 38.61 3.41
825 826 7.041107 TGGTTTGTCTTCCTTTGAATTTTCAG 58.959 34.615 0.00 0.00 38.61 3.02
826 827 6.940739 TGGTTTGTCTTCCTTTGAATTTTCA 58.059 32.000 0.00 0.00 34.92 2.69
827 828 7.841915 TTGGTTTGTCTTCCTTTGAATTTTC 57.158 32.000 0.00 0.00 0.00 2.29
828 829 8.806429 ATTTGGTTTGTCTTCCTTTGAATTTT 57.194 26.923 0.00 0.00 0.00 1.82
829 830 7.224557 CGATTTGGTTTGTCTTCCTTTGAATTT 59.775 33.333 0.00 0.00 0.00 1.82
830 831 6.701400 CGATTTGGTTTGTCTTCCTTTGAATT 59.299 34.615 0.00 0.00 0.00 2.17
831 832 6.215845 CGATTTGGTTTGTCTTCCTTTGAAT 58.784 36.000 0.00 0.00 0.00 2.57
832 833 5.451242 CCGATTTGGTTTGTCTTCCTTTGAA 60.451 40.000 0.00 0.00 0.00 2.69
833 834 4.037446 CCGATTTGGTTTGTCTTCCTTTGA 59.963 41.667 0.00 0.00 0.00 2.69
834 835 4.037446 TCCGATTTGGTTTGTCTTCCTTTG 59.963 41.667 0.00 0.00 39.52 2.77
835 836 4.211920 TCCGATTTGGTTTGTCTTCCTTT 58.788 39.130 0.00 0.00 39.52 3.11
836 837 3.821033 CTCCGATTTGGTTTGTCTTCCTT 59.179 43.478 0.00 0.00 39.52 3.36
837 838 3.072476 TCTCCGATTTGGTTTGTCTTCCT 59.928 43.478 0.00 0.00 39.52 3.36
838 839 3.408634 TCTCCGATTTGGTTTGTCTTCC 58.591 45.455 0.00 0.00 39.52 3.46
839 840 4.315803 TCTCTCCGATTTGGTTTGTCTTC 58.684 43.478 0.00 0.00 39.52 2.87
840 841 4.351874 TCTCTCCGATTTGGTTTGTCTT 57.648 40.909 0.00 0.00 39.52 3.01
841 842 4.351874 TTCTCTCCGATTTGGTTTGTCT 57.648 40.909 0.00 0.00 39.52 3.41
842 843 5.629079 ATTTCTCTCCGATTTGGTTTGTC 57.371 39.130 0.00 0.00 39.52 3.18
843 844 6.001460 TGTATTTCTCTCCGATTTGGTTTGT 58.999 36.000 0.00 0.00 39.52 2.83
844 845 6.494893 TGTATTTCTCTCCGATTTGGTTTG 57.505 37.500 0.00 0.00 39.52 2.93
845 846 6.940298 TCTTGTATTTCTCTCCGATTTGGTTT 59.060 34.615 0.00 0.00 39.52 3.27
846 847 6.472887 TCTTGTATTTCTCTCCGATTTGGTT 58.527 36.000 0.00 0.00 39.52 3.67
847 848 6.049955 TCTTGTATTTCTCTCCGATTTGGT 57.950 37.500 0.00 0.00 39.52 3.67
848 849 5.007136 GCTCTTGTATTTCTCTCCGATTTGG 59.993 44.000 0.00 0.00 40.09 3.28
849 850 5.582269 TGCTCTTGTATTTCTCTCCGATTTG 59.418 40.000 0.00 0.00 0.00 2.32
850 851 5.582665 GTGCTCTTGTATTTCTCTCCGATTT 59.417 40.000 0.00 0.00 0.00 2.17
851 852 5.112686 GTGCTCTTGTATTTCTCTCCGATT 58.887 41.667 0.00 0.00 0.00 3.34
852 853 4.160439 TGTGCTCTTGTATTTCTCTCCGAT 59.840 41.667 0.00 0.00 0.00 4.18
853 854 3.509967 TGTGCTCTTGTATTTCTCTCCGA 59.490 43.478 0.00 0.00 0.00 4.55
854 855 3.849911 TGTGCTCTTGTATTTCTCTCCG 58.150 45.455 0.00 0.00 0.00 4.63
855 856 5.877012 TCATTGTGCTCTTGTATTTCTCTCC 59.123 40.000 0.00 0.00 0.00 3.71
856 857 6.974932 TCATTGTGCTCTTGTATTTCTCTC 57.025 37.500 0.00 0.00 0.00 3.20
857 858 7.934855 ATTCATTGTGCTCTTGTATTTCTCT 57.065 32.000 0.00 0.00 0.00 3.10
858 859 8.976986 AAATTCATTGTGCTCTTGTATTTCTC 57.023 30.769 0.00 0.00 0.00 2.87
882 883 9.901172 GGAGTATCAGATTTTCTTTACCCTAAA 57.099 33.333 0.00 0.00 36.25 1.85
883 884 9.053472 TGGAGTATCAGATTTTCTTTACCCTAA 57.947 33.333 0.00 0.00 36.25 2.69
884 885 8.618240 TGGAGTATCAGATTTTCTTTACCCTA 57.382 34.615 0.00 0.00 36.25 3.53
885 886 7.510675 TGGAGTATCAGATTTTCTTTACCCT 57.489 36.000 0.00 0.00 36.25 4.34
886 887 7.171678 CGATGGAGTATCAGATTTTCTTTACCC 59.828 40.741 0.00 0.00 36.25 3.69
887 888 7.307455 GCGATGGAGTATCAGATTTTCTTTACC 60.307 40.741 0.00 0.00 36.25 2.85
888 889 7.567771 CGCGATGGAGTATCAGATTTTCTTTAC 60.568 40.741 0.00 0.00 36.25 2.01
889 890 6.420903 CGCGATGGAGTATCAGATTTTCTTTA 59.579 38.462 0.00 0.00 36.25 1.85
892 893 4.302455 CGCGATGGAGTATCAGATTTTCT 58.698 43.478 0.00 0.00 36.25 2.52
893 894 3.120854 GCGCGATGGAGTATCAGATTTTC 60.121 47.826 12.10 0.00 36.25 2.29
894 895 2.802816 GCGCGATGGAGTATCAGATTTT 59.197 45.455 12.10 0.00 36.25 1.82
897 898 0.244994 GGCGCGATGGAGTATCAGAT 59.755 55.000 12.10 0.00 36.25 2.90
943 944 3.771160 GATGTCGGGCTCGGGTGT 61.771 66.667 5.94 0.00 36.95 4.16
944 945 4.873129 CGATGTCGGGCTCGGGTG 62.873 72.222 5.94 0.00 36.95 4.61
1442 1452 3.066760 CCAGAAACCAATCTAATTCGCCC 59.933 47.826 0.00 0.00 0.00 6.13
1514 1525 8.515473 TCATATCGATACCAAATCAAACTACG 57.485 34.615 7.41 0.00 0.00 3.51
1634 1645 6.183360 GGATAACAGCAACATCCGAAATTGTA 60.183 38.462 0.00 0.00 0.00 2.41
1673 1684 6.485171 AGGTATTTTAGCAACTTCCACATCT 58.515 36.000 0.00 0.00 0.00 2.90
1736 1747 7.126573 TGGATTTCTACATTACCCTGTATGTGA 59.873 37.037 0.00 0.00 36.46 3.58
1737 1748 7.226720 GTGGATTTCTACATTACCCTGTATGTG 59.773 40.741 0.00 0.00 36.46 3.21
1740 1751 7.347222 TCAGTGGATTTCTACATTACCCTGTAT 59.653 37.037 0.00 0.00 31.49 2.29
1858 1869 7.552330 ACCCGTTTAAGACTAACAAAACAGTAA 59.448 33.333 0.00 0.00 32.61 2.24
1894 1905 2.763448 GTGAGTATTCACCTCTCTGCCT 59.237 50.000 7.11 0.00 46.47 4.75
1920 1931 5.334414 CCAGCTGAAGTTTGTCAGTCATTAC 60.334 44.000 17.39 0.00 45.75 1.89
1925 1936 2.565841 ACCAGCTGAAGTTTGTCAGTC 58.434 47.619 17.39 0.00 45.75 3.51
1932 1943 5.746990 AGTATCACTACCAGCTGAAGTTT 57.253 39.130 17.39 10.23 0.00 2.66
1999 2010 1.834263 CTACCAGAAGAAGGGACCAGG 59.166 57.143 0.00 0.00 0.00 4.45
2027 2038 6.121776 TGGTCAGTTTTGTCCTATGTGTAT 57.878 37.500 0.00 0.00 34.14 2.29
2101 2116 2.097825 GCTCATGACCAGCAAAAGGAT 58.902 47.619 0.00 0.00 36.82 3.24
2138 2153 8.190122 TGCCATGATTTCTATACACAATCAAAC 58.810 33.333 0.00 0.00 39.69 2.93
2201 2216 5.633830 AGCTACATTCAGTTTGAACATGG 57.366 39.130 0.00 0.00 39.45 3.66
2290 2305 2.755650 ACAACTAACTGAAGTGAGCCG 58.244 47.619 0.00 0.00 29.18 5.52
2375 2390 3.715495 CTTGATCGCTGCAGAGAATAGT 58.285 45.455 24.24 7.66 0.00 2.12
2379 2394 0.037046 TGCTTGATCGCTGCAGAGAA 60.037 50.000 24.24 5.96 32.55 2.87
2434 2450 8.535592 CGAGAGTGAACATGAGATTTTATACAC 58.464 37.037 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.