>input_sequence_76146
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GTGCGACTCACCCTTTTCCCCCATGTCGGACGTTTACAAG
AAAGCCAAGCCCGGCCGCCTCGTCTTCAAGGGCGGCGAGGCCGCCACCCTCCGCAAGCCCAAGAAGCAAAAGAAGAACAA
GAAGCCCGCCGACGATGTCCCCGCCGACGCCGACGCTGAA---------GCCGCCGCTGCCGCTGCGGCCACGGAGGGTG
CCGAAGCCGGAGGCGACTACACCATCGACGCGGCGAAGCGGATGAAGTACGAGGAGCTGTTCCCCGTGGAGACGAGGAAG
TTCGGGTACGACCCGTCCAACGCCGCCCGCACCTCCCGCGACCGCACCGTCGAGCAGGCCCTCGACGACCGCGTGAGGAA
GAAGGCCGACCGCTACTGCAAGTGAGGTCAGGCGCTAGAATCTAGGGTTTGTTGATTCGGCGGAATCGGTCGCCTTAGAT
TGTTGCGCTCGGGGCGAATTAGATTGGTTTCTGGTGTT-AAACACATGGATTAAGTTGTCGGGGAACTGATTTATGTTCG
ATTGCGTAGTTTGATTTGGTATCGATATGAATTATGAAACAGCC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>chr2B_1_TraesCS2B01G421600
AAGCAGCGGGGATATCTCCGACAGGTTGGAGACCTCGAGGAACTGCAGGCGCACGACATGGACGTCTTCGGCGCCGCTCC
TCCTTTTTGCTTGTGCGAGCGGCAGTAGCTGTTGTTACTTAGCTGGAGGAGTGAAGCCCGGAGCCGCTCGACGTGTAGAC
CGCGGCGGAGGAGGAGCGTGGCGCGCGGCGGGCCGGTGGCAGAGGCCGCGGCGTCGGCTGCGGCTGCGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGAGGTGGGCG
GAGGCCGCGACAGGCTACTGCGGCGGAGGAGGAGCGCGGCGGGCAGCGGGCCGGTGGCAGCGGCCGCGGAAGAGCTAACG
GCGGGCCAGTGGCAGCGGCCGCGGAGGAGCGCTTGTCCGCTTTTTGTTCTTGTGTGTTGGGTTTATCCAAACGTCGCGCG
TGTCCGCCTCAGGTCCGCTAGGCGGACGGACGACCCAAACGGACAAAATGCGGACAAAATCCGTGTCCGTCCTTGGAGTT
GCTTCATGTGAGGAAAAATGGCTAACTGAAAATTCAAAGGAAGACAAACCAAATCGGAGAGAAATACAAGAGCACAATGA
ATTTTAGGGTAAAGAAAATCTGATACTCCATCGCGCCTCGAGCTGTAGCCAACCGATCCGGCGACACCCGAGCCCGACAT
CGACCACATCATACATACAAGGCACACCTCGGCGTCAGCCGTGCGACTCACCCTTTTCCCCCATGTCGGACGTTTACAAG
AAAGCCAAGCCCGGCCGCCTCGTCTTCAAGGGCGGCGAGGCCGCCACCCTCCGCAAGCCCAAGAAGCAAAAGAAGAACAA
GAAGCCCGCCGACGATGTCCCCGCCGACGCCGACGCTGAA---------GCCGCCGCTGCCGCTGCGGCCACGGAGGGTG
CCGAAGCCGGAGGCGACTACACCATCGACGCGGCGAAGCGGATGAAGTACGAGGAGCTGTTCCCCGTGGAGACGAGGAAG
TTCGGGTACGACCCGTCCAACGCCGCCCGCACCTCCCGCGACCGCACCGTCGAGCAGGCCCTCGACGACCGCGTGAGGAA
GAAGGCCGACCGCTACTGCAAGTGAGGTCAGGCGCTAGAATCTAGGGTTTGTTGATTCGGCGGAATCGGTCGCCTTAGAT
TGTTGCGCTCGGGGCGAATTAGATTGGTTTCTGGTGTT-AAACACATGGATTAAGTTGTCGGGGAACTGATTTATGTTCG
ATTGCGTAGTTTGATTTGGTATCGATATGAATTATGAAACAGCCATATGTGATGTGTTGCTACTTTTGTTCAATGTTTGA
TGCACATTGGCGATACCAGAGAAACAGTTTGTATTTATACAATCTACAATTTCGGATGTTGCTGTTATCCAACTTTTGAG
TGTAGATGTGGAAGTTGCTAAAATACCTTAGGGTTGGTTGGATCCTTAAAGTGTTGGTAGAAAGGATCACATACAGGGTA
ATGTAGAAATCCACTGACCAGGCTTACTGCTATATCCAAGGGGATTGAGTCACAGTGAGATTACTCTTAATTTCTATAAT
AATAGTTGTCATGAGGTGCGAATGTTATTTACTGTTTTGTTAGTCTTAAACGGGTGCTTAGCATAGGCAGAGAGGTGAAT
ACTCACTGTCGTAATGACTGACAAACTTCAGCTGGTAGTGATACTTGTGGGTTATGATCGGGTTATCTTCGTATTATTTT
TGGCATTGTCCTGGTCCCTTCTTCTGGTAGATAAATGATACACATAGGACAAAACTGACCATGCTGTTGTTCTT----CG
TTGATGGGAAGAAGGAAGACCCACTGCCCCGTGTTATCCTTTTGCTGGTCATGAGCTCTTTTATCATATATTGTTTGATT
GTGTATAGAAATCATGGCATGACATGACAATGAAACGGTGTGTTTGTATTGATGGCCATGTTCAAACTGAATGTAGCTTG
ATTTTTTTTTCTTACTTGACAGGTGATTAACTCATCTTAGTCGTTTGCTGCTGTGATGGACAGACGGCTCACTTCAGTTA
GTTGTTCTCAATGTATCAGAAAGTGCATCTTTGGACAACTGTTAGTCCAATGGTGGCATATGTAATAGAACTATTCTCTG
CAGCGATCAAGCAATTCCTTTATCTTGCATGTTT-GTACTAGTAAACACGT---GTATA--AAATCTCATGTTCACTCTC
GGTTGTCCGTTTTGGTCAATTGGATAAATGGTGTATGCTTGGTACATGCCAATTTATAACTGTGTTTTCCATTCAGTTGT
GTCCTTTATTTCTC
>chr2A_860
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AGAAATACAAGAGCACAAAAT
TTAGGGTAAAGA---AACTCTGATTCTCCATCGCGCCTCGAGCTGTAGCCAACCGACCCGGCG--ACCCGAGCCCGACAT
CGACCACATCATACATACAAGGCACACCTCGGCGTCAGCCGTGCGACTCACCCTTTTCCCCCATGTCGGACGTTTACAAG
AAAGCCAAGCCCGGCCGCCTCGTCTTCAAGGGCGGCGAGGCCGCCACCCTCCGCAAGCCCAAGAAGCAAAAGAAGAACAA
GAAGCCCGCCGACGATGTCCCCGCCGACGCCGACGCTGAAGCCTCCGCCGCTGCTGCTGCCGCTGCGGCCACGGAGGGCG
CCGAAGCCGGCGGCGACTACACCATCGACGCGGCGAAGCGGATGAAGTACGAGGAGCTGTTCCCCGTGGAGACGAGGAAG
TTCGGGTACGACCCGTCCAACGCCGCCCGCACCTCCCGCGACCGCACCGTCGAGCAGGCCCTCGACGACCGCGTGAGGAA
GAAGGCCGACCGCTACTGCAAGTGAGGTCAGGCGCTAGAATCTAGGGTTTGTTGATTCGGCGGAATCGGTCGCCTTAGAT
TGTTGCGCTCGAGGCGAATTAGATTGGTTTCTGGTGTTGAAACACATGGATTAAGTTGTCGGGGAACTGATTTATGTTCG
ATTGTTTAGTTTGATTTGGTATCGATATGAATTATGAAACAGCCATATGTGATGTGTTGCTACTTTTGTTCAATGTTTGA
TGCACATTGGCAATACCAGAGTAACAATC--TATTTATATAATCCACAATTTCGGATGCTGCTGTTATCCAACTTTTGAG
TGTGGATGTGGAAGTTGCTAAAATACCTGAGGGTTGGTTGGATCCTTAAAGTGTTGGTAA------------ACAGGGTA
ATGTAGAAATCCACTGACCAGGCTTACTGCTATATCCAAGGGGATTGAGTCACAGTGAGATTATTCTTAATTTCTATAAT
AATAGTTGTCATGAGGTGTGAATGTTATATACTGTTTTGTTAGTCTTAAACAGGTGCTTAGCATTGGCAGAGAGGTGAAT
ACTCACTGTCATAATAACTGACGAACTTCAGCTGGTAGTGATACTTGTGGGTTATGATCGGGTTATCTTCGTATTATTTT
TGGCATTGTTCTGGTCCCTTCTTCTGGTAGATAAACGTTACACTTAGGACAAAACTAACTATGCTGTTGTTCTTTCTTCA
TTGATGGGAAGAAGGAAGACCCACTGCCCCGTGTTCTCCTTTTGCTGGCCATGAGCTCATTTATCATCTATTTTTTGATT
GTGTATAGAAATCATGGCATGACATGACAATGAAATGGTGTGTTTGTATTGATGCTCATGTTCAAACCGAATGTAGCTTG
A-TTTTTTTTCTTACTTGACAGGTGATTAACTCATCTTAGTTGTTTGCTGCTGTGATGGACAGAAGGCTCACTTCAGTT-
---GTTCTCAATGTATCAGAAGGTGCACCTTTGGACAACTGTTAGTCCAATGGTGGCATATGTAATAGAGCTAGTCTCTG
CAGCGATCAAGCAATTCCTTTATCTTGCATGTTTTGTACTAGTAAACACAT---GTGGTATAAATCTCATGTTCACTCTC
GGTTGTCCGTTTTGGTCAATTGGATAAATGGTGTATGCTTGGTACATGCCAATTTATAACTGCGTTTTCCATTCAGCTGT
ATCCTTTATTTCTC
>chr2D_891
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------AAAAA---AACTCTGATTCTCCATCGCGCCTCGAGCC----CCAACCGACCCGGCG--ACCCGAGCCCGACAT
CGACCACATCATACATACGAGGCACACCTCGGCGTCAGCCGTGCGACTCACCCTTTTACCCCATGTCGGACGTTTACAAG
AAAGCCAAGCCCGGCCGCCTCGTCTTCAAGGGCGGCGAGGCCGCCACCCTCCGCAAGCCCAAGAAGCAAAAGAAGAACAA
GAAGCCCGCCGACGATGTCCCCGCCGACGCCGACGCTGAAGCCGCCGCCGCCGCTGCTGCCGCTGCGGCCACGGAGGGCG
CCGAAGCCGGAGGCGACTACACCATCGACGCGGCGAAGCGGATGAAGTACGAGGAGCTGTTCCCCGTGGAGACGAGGAAG
TTCGGGTACGACCCGTCCAACGCCGCCCGCACCTCCCGCGACCGCACCGTCGAGCAGGCCCTCGACGACCGCGTGAGGAA
GAAGGCCGACCGCTACTGCAAGTGAGGTCAGGCGCTAGAATCTAGGGTTTGTTGATTCGGCGGAATCGGTCGCCTTAGAT
TGTTGCGCTTGAGGCGAATTAGATTGGTTTCTGGTGTTGAAACACATGGATTAAGTTGTCGGGGAACTGATTTATGTTCG
ATTGTGTAGTTTGATTTGGTATCGATATGAATTATGAAACATCCATATGTGATGTGTTGCTACTTTTGTTCAATGTTTGA
TGCACATTGGTGATACCAGAGTAACAGTC--TATTTATACAATCCACAATTTCGTTTGTTGCTGTTATCCAACTTTTGAG
TGTTGATGTGGAAGTTGCTAAAATACCTTAGGGTTGGTTGGATCCTTAAAGTGTTGGTAGAAAGGACTACTTACAGGGTA
ATGTAGAAATCCACCGACCAGGCTTACTGCTATATCCAAGGAGATTGTGTCACAGTGAGATTATTCTTAATTTCTATAAT
AATAGTTGTCATGAGGTGTGAATGTTATATACTGTTTTCTTAGTCTTAAACGGTTGCTTAGCATTGACAGAGAGGTGAAT
ACTCACTATCATAATAACTGACGAACTTCAGCTGGTAGTGATACTTG--GGTTATGATCGGGTTATCTTCGTATTATTTT
TGGCATTGTTCTGGTCCCTTCTTCTGGTAGATAAATGTTACACATAGGACAAAACTGACCATGCTGTTGTTCTTTCTTCG
TTGATAGGAAGAAGGAAGACCCACTGCCCCGTCTTCTCCTTTTTCTGGTCTTGAGCTCATTTATCATATATTTTTTGATT
GTGTATAGAAATTATGGCATGACATGACAATGAAACGGTATGTTTGTATTGATGGTCATGTTCAAACCGAATGTAGCTTG
A-TTTTTTTTCTTACTTGACAGGTGATTAACTCATCTTAGTCGTTTGCTGCTGTGATGGACAGAAGGCTCACTTCAGTTA
GTTGTTCTCAATGTATCAGAAAGTGCATCTTTGGACAACTGTTAGTCCAATGGTGGCATATGTAATAGAGCTAGTCTCTG
CAGCGATCAAGCAATTCCTTTATCTTGCATGTTT-GTACTAGTAAACACATGTGGTATA--AAATCTCATGTTCACTCTC
GGTTGTCCGTTTTGGTCAATTGGATAAATGGTGTATGCTTGGTACATGCCAATTTATAACTGTGTTCTCCATTCAGTTGT
GTCCTTTATTT---
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------SSS
S-SSSSSSSS--SSS--S------S-------------------------------S------SS---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-----------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
----S---------------------------------------------------------------------------
---------------------S------SSS-------------S-----------------------------------
---S--------------------------------------------------------------SS--S---------
---------------------------------------------------------------S----------------
------------------S---------S-----------------------------------S---------------
----------S----S------S---------------------------------------------------------
---------S---------------------------S------------------------------------------
-----------------------------------S----------------------S-------------S-------
-------------------------------------------------------S-----------S------------
-S--------------------------------------------------------------S---------------
---------------------------------------------------------------------S---S------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
--------------
>forward_100
--------------------------------------------------------------------------------
TCCTTTTTGCTTGTGCGAGC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>reverse_2010
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CCTGGTCCCTTCTTCTGGTAG--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
