Multiple sequence alignment - TraesCS2B01G420100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G420100 chr2B 100.000 4682 0 0 1 4682 601943706 601939025 0.000000e+00 8647.0
1 TraesCS2B01G420100 chr2D 91.910 4487 198 68 5 4372 512172950 512168510 0.000000e+00 6122.0
2 TraesCS2B01G420100 chr2D 94.667 150 8 0 4473 4622 307423471 307423620 2.820000e-57 233.0
3 TraesCS2B01G420100 chr2A 91.941 4070 198 54 498 4472 655550971 655546937 0.000000e+00 5579.0
4 TraesCS2B01G420100 chr2A 85.645 411 23 14 4 384 655551730 655551326 2.620000e-107 399.0
5 TraesCS2B01G420100 chr2A 92.537 67 5 0 4566 4632 384687052 384686986 3.860000e-16 97.1
6 TraesCS2B01G420100 chr5A 99.351 154 1 0 4472 4625 673770417 673770570 3.570000e-71 279.0
7 TraesCS2B01G420100 chr5A 96.753 154 5 0 4470 4623 640067797 640067644 1.670000e-64 257.0
8 TraesCS2B01G420100 chr3A 98.684 152 2 0 4472 4623 517776028 517776179 2.150000e-68 270.0
9 TraesCS2B01G420100 chr7A 97.368 152 4 0 4472 4623 91517507 91517356 4.650000e-65 259.0
10 TraesCS2B01G420100 chr5D 94.079 152 9 0 4472 4623 45938610 45938459 1.010000e-56 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G420100 chr2B 601939025 601943706 4681 True 8647 8647 100.000 1 4682 1 chr2B.!!$R1 4681
1 TraesCS2B01G420100 chr2D 512168510 512172950 4440 True 6122 6122 91.910 5 4372 1 chr2D.!!$R1 4367
2 TraesCS2B01G420100 chr2A 655546937 655551730 4793 True 2989 5579 88.793 4 4472 2 chr2A.!!$R2 4468

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 377 0.552848 ATCCATCGTCCCCATTTGCT 59.447 50.000 0.00 0.0 0.00 3.91 F
916 1337 1.337447 CGCTTTCTCGTCCCCAAGTTA 60.337 52.381 0.00 0.0 0.00 2.24 F
1555 2035 1.260544 GAAATGGCAAGCCTTCTGGT 58.739 50.000 12.96 0.0 36.94 4.00 F
2755 3237 0.095935 CACTCAGCGGCAAGAAATCG 59.904 55.000 1.45 0.0 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1555 2035 0.539669 TCTCAACTGTCCTCGGAGCA 60.540 55.000 0.00 0.0 0.00 4.26 R
1837 2317 1.149627 CCAAACCCGGACAACTCCA 59.850 57.895 0.73 0.0 36.12 3.86 R
3220 3707 0.749649 TGGTTTTTGCTTGTCGCCAT 59.250 45.000 0.00 0.0 38.05 4.40 R
4546 5061 0.034477 ATCCGTTGGCCCCACTTTAG 60.034 55.000 0.00 0.0 0.00 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 54 7.502561 ACCAGTACTGCTCAAGTTTTTATTCTT 59.497 33.333 17.86 0.00 40.56 2.52
48 55 7.805071 CCAGTACTGCTCAAGTTTTTATTCTTG 59.195 37.037 17.86 0.00 40.56 3.02
64 77 3.777106 TCTTGTGCTGAAGATTCCTGT 57.223 42.857 0.00 0.00 0.00 4.00
80 93 2.876645 GTCTCTCGTCTTGGCGCG 60.877 66.667 0.00 0.00 0.00 6.86
219 255 4.124126 GGACCCCATCCCCCTCCT 62.124 72.222 0.00 0.00 42.46 3.69
257 293 2.045280 CTCCCATCTCCGATTCGCT 58.955 57.895 0.00 0.00 0.00 4.93
265 305 3.470888 CCGATTCGCTCACCCCCT 61.471 66.667 0.00 0.00 0.00 4.79
318 361 2.889170 TTCCATTCCGTTCCAATCCA 57.111 45.000 0.00 0.00 0.00 3.41
319 362 3.380471 TTCCATTCCGTTCCAATCCAT 57.620 42.857 0.00 0.00 0.00 3.41
333 377 0.552848 ATCCATCGTCCCCATTTGCT 59.447 50.000 0.00 0.00 0.00 3.91
397 441 4.368808 CACCCAAGAACACGCGCG 62.369 66.667 30.96 30.96 0.00 6.86
428 472 3.314331 CAGACAGGGCCGACACCT 61.314 66.667 0.00 0.00 39.43 4.00
429 473 2.997897 AGACAGGGCCGACACCTC 60.998 66.667 0.00 0.00 35.78 3.85
439 483 2.760385 GACACCTCCCTCCCTCCG 60.760 72.222 0.00 0.00 0.00 4.63
457 501 3.416880 TCCCTCGGGCCCCAATTC 61.417 66.667 18.66 0.00 34.68 2.17
542 919 3.606687 GCGAGTTTTTCTATTCCCCTCA 58.393 45.455 0.00 0.00 0.00 3.86
578 957 1.399572 CTTCGAGATATGTGTCGCCG 58.600 55.000 4.02 0.00 40.59 6.46
585 964 2.124903 GATATGTGTCGCCGAATTCGT 58.875 47.619 25.10 7.74 37.74 3.85
605 984 2.046314 CACCGCCCGTTCCTTCAT 60.046 61.111 0.00 0.00 0.00 2.57
607 986 2.267642 CCGCCCGTTCCTTCATCA 59.732 61.111 0.00 0.00 0.00 3.07
733 1141 4.580551 GCGGCCAGATGCATTGCC 62.581 66.667 20.11 20.11 43.89 4.52
781 1189 1.537202 GGGATTTCATGGCAGATACGC 59.463 52.381 0.00 0.00 0.00 4.42
916 1337 1.337447 CGCTTTCTCGTCCCCAAGTTA 60.337 52.381 0.00 0.00 0.00 2.24
924 1345 2.435410 CCCCAAGTTACCGCCGAC 60.435 66.667 0.00 0.00 0.00 4.79
1093 1540 3.431626 CCATGGAGTCGTGCCAATTAGTA 60.432 47.826 5.56 0.00 39.21 1.82
1135 1588 2.683933 GTGGAGGCGGAGGAGGAA 60.684 66.667 0.00 0.00 0.00 3.36
1136 1589 2.121832 TGGAGGCGGAGGAGGAAA 59.878 61.111 0.00 0.00 0.00 3.13
1510 1990 1.831580 GCAGGAGCTCCAGTTCATTT 58.168 50.000 33.90 8.39 38.89 2.32
1513 1993 2.751806 CAGGAGCTCCAGTTCATTTTCC 59.248 50.000 33.90 3.39 38.89 3.13
1516 1996 3.441922 GGAGCTCCAGTTCATTTTCCTTC 59.558 47.826 28.43 0.00 35.64 3.46
1552 2032 2.571548 CCGAAATGGCAAGCCTTCT 58.428 52.632 12.96 0.00 36.94 2.85
1555 2035 1.260544 GAAATGGCAAGCCTTCTGGT 58.739 50.000 12.96 0.00 36.94 4.00
1921 2401 1.079503 CTTGCGTCTACCTCAAAGCC 58.920 55.000 0.00 0.00 0.00 4.35
2034 2514 3.319755 CCTGCATTGTGATTCCAACAAC 58.680 45.455 0.00 0.00 0.00 3.32
2080 2560 2.042686 TGCATGAGTTCTATGGGCAC 57.957 50.000 0.00 0.00 0.00 5.01
2179 2660 5.275067 TGGGATTGTTTTTGTTTCTCCTG 57.725 39.130 0.00 0.00 0.00 3.86
2189 2670 9.802039 TGTTTTTGTTTCTCCTGTATATACCTT 57.198 29.630 10.38 0.00 0.00 3.50
2326 2807 6.064846 CATAGCAACTTTGGTAGGCTTATG 57.935 41.667 6.97 0.00 43.44 1.90
2393 2874 1.467734 GCTGACAGTTTGCTCTCCATG 59.532 52.381 3.99 0.00 0.00 3.66
2396 2878 3.141398 TGACAGTTTGCTCTCCATGTTC 58.859 45.455 0.00 0.00 0.00 3.18
2415 2897 1.417517 TCTGCAGTGACTTGTGTCCAT 59.582 47.619 14.67 0.00 42.28 3.41
2425 2907 4.457603 TGACTTGTGTCCATTTTAATCCGG 59.542 41.667 0.00 0.00 42.28 5.14
2445 2927 2.512885 GCAGACGACAATTGCTTCATG 58.487 47.619 5.05 0.85 35.05 3.07
2454 2936 4.338012 ACAATTGCTTCATGACTGGATCA 58.662 39.130 5.05 0.00 43.13 2.92
2572 3054 5.391629 CCTGATGGAAAGGTACGTTTTTAGC 60.392 44.000 14.28 9.91 34.57 3.09
2643 3125 3.691609 ACTGATCTCCAATTTTCCTTCGC 59.308 43.478 0.00 0.00 0.00 4.70
2674 3156 0.517316 GTGCAGTGGTTGGAACGATC 59.483 55.000 0.00 0.00 0.00 3.69
2755 3237 0.095935 CACTCAGCGGCAAGAAATCG 59.904 55.000 1.45 0.00 0.00 3.34
2861 3345 4.527816 AGCCCTTTTTCATCAAGCATGTTA 59.472 37.500 0.00 0.00 33.66 2.41
3166 3653 1.340017 GGGGAGCACATAGTTTCTGCA 60.340 52.381 0.00 0.00 33.06 4.41
3214 3701 2.631160 ACCGTGACAACCAAGATGAA 57.369 45.000 0.00 0.00 0.00 2.57
3220 3707 4.929211 CGTGACAACCAAGATGAATCTGTA 59.071 41.667 0.00 0.00 37.19 2.74
3232 3719 7.648343 AGATGAATCTGTATGGCGACAAGCA 62.648 44.000 0.00 0.00 41.16 3.91
3310 3797 1.435515 GCACGGCACAAAACCAAGA 59.564 52.632 0.00 0.00 0.00 3.02
3311 3798 0.594796 GCACGGCACAAAACCAAGAG 60.595 55.000 0.00 0.00 0.00 2.85
3323 3810 0.251787 ACCAAGAGGCCATGTTTCCC 60.252 55.000 5.01 0.00 39.06 3.97
3340 3827 0.982704 CCCTGGCCTCTCATATCCAG 59.017 60.000 3.32 0.00 44.25 3.86
3377 3864 5.363580 TCCAGCAAAAGTTTTCCTTCAAGAT 59.636 36.000 0.00 0.00 31.27 2.40
3529 4016 2.843701 CACAAGCTTCTGAGGAACTGT 58.156 47.619 0.00 0.00 41.55 3.55
3568 4055 4.781616 TGGGGCCGGGTGATCGTA 62.782 66.667 2.18 0.00 0.00 3.43
3650 4137 3.376935 CTGGTTCATCCGGAGCGCT 62.377 63.158 11.27 11.27 45.09 5.92
3665 4152 1.289109 GCGCTCGGTGAAAGCAAGTA 61.289 55.000 0.00 0.00 39.81 2.24
3715 4203 1.514873 GCCATCAAGAAAAGCGCCG 60.515 57.895 2.29 0.00 0.00 6.46
3744 4232 2.903357 CTATGGCGCTGGACCAGT 59.097 61.111 22.58 5.09 41.46 4.00
3919 4416 1.404315 GCTCGCTAGCTTTGTACCACT 60.404 52.381 13.93 0.00 45.85 4.00
3922 4421 1.739371 CGCTAGCTTTGTACCACTCCC 60.739 57.143 13.93 0.00 0.00 4.30
4057 4568 2.844348 GTGTAAATTCTCCTCCCTCCCA 59.156 50.000 0.00 0.00 0.00 4.37
4077 4588 1.271597 ACTGAATGTGTGGGAAGGAGC 60.272 52.381 0.00 0.00 0.00 4.70
4090 4601 0.622665 AAGGAGCCTGATGGAACTGG 59.377 55.000 0.00 0.00 34.57 4.00
4091 4602 0.548682 AGGAGCCTGATGGAACTGGT 60.549 55.000 0.00 0.00 34.57 4.00
4092 4603 1.204146 GGAGCCTGATGGAACTGGTA 58.796 55.000 0.00 0.00 34.57 3.25
4101 4612 5.512060 CCTGATGGAACTGGTAGGATACATG 60.512 48.000 0.00 0.00 38.45 3.21
4123 4634 4.838423 TGTGTTCCATCCATCCGAGTATAT 59.162 41.667 0.00 0.00 0.00 0.86
4125 4636 5.047306 GTGTTCCATCCATCCGAGTATATGA 60.047 44.000 0.00 0.00 0.00 2.15
4141 4652 9.370126 CGAGTATATGAAAAATTCGTTCATTCC 57.630 33.333 17.70 9.52 41.82 3.01
4172 4683 2.797156 CAGTGTCCAGTTCTCTTCAACG 59.203 50.000 0.00 0.00 0.00 4.10
4177 4688 4.038763 TGTCCAGTTCTCTTCAACGTATGT 59.961 41.667 0.00 0.00 0.00 2.29
4178 4689 5.242171 TGTCCAGTTCTCTTCAACGTATGTA 59.758 40.000 0.00 0.00 0.00 2.29
4179 4690 5.800941 GTCCAGTTCTCTTCAACGTATGTAG 59.199 44.000 0.00 0.00 0.00 2.74
4180 4691 4.563184 CCAGTTCTCTTCAACGTATGTAGC 59.437 45.833 0.00 0.00 0.00 3.58
4181 4692 5.161358 CAGTTCTCTTCAACGTATGTAGCA 58.839 41.667 0.00 0.00 0.00 3.49
4182 4693 5.061064 CAGTTCTCTTCAACGTATGTAGCAC 59.939 44.000 0.00 0.00 0.00 4.40
4183 4694 3.754955 TCTCTTCAACGTATGTAGCACG 58.245 45.455 0.00 0.00 44.80 5.34
4184 4695 2.256174 TCTTCAACGTATGTAGCACGC 58.744 47.619 0.00 0.00 43.10 5.34
4185 4696 2.094906 TCTTCAACGTATGTAGCACGCT 60.095 45.455 0.00 0.00 43.10 5.07
4187 4698 1.989864 TCAACGTATGTAGCACGCTTG 59.010 47.619 0.00 0.00 43.10 4.01
4188 4699 1.724623 CAACGTATGTAGCACGCTTGT 59.275 47.619 0.00 0.00 43.10 3.16
4189 4700 2.918600 CAACGTATGTAGCACGCTTGTA 59.081 45.455 0.00 0.00 43.10 2.41
4190 4701 2.523015 ACGTATGTAGCACGCTTGTAC 58.477 47.619 0.00 0.00 43.10 2.90
4206 4721 3.417069 TGTACCCAGTTTCAGATGTGG 57.583 47.619 0.00 0.00 0.00 4.17
4209 4724 4.348461 TGTACCCAGTTTCAGATGTGGTTA 59.652 41.667 0.00 0.00 0.00 2.85
4227 4742 3.408634 GTTAAGCTTGTGGTTCTGGCTA 58.591 45.455 9.86 0.00 35.36 3.93
4256 4771 4.947147 GTGTGGGCCTTGTGCGGA 62.947 66.667 4.53 0.00 42.61 5.54
4282 4797 6.377146 TGCTGAAAAGGTAATTATTGTCCCTC 59.623 38.462 0.00 0.00 0.00 4.30
4323 4838 5.959594 TGGTTGATCCCTTGATTGATTGATT 59.040 36.000 0.00 0.00 34.77 2.57
4372 4887 8.164070 GTCCCATAAATATACTGGTCCTGAATT 58.836 37.037 2.23 0.00 0.00 2.17
4373 4888 8.163408 TCCCATAAATATACTGGTCCTGAATTG 58.837 37.037 2.23 0.00 0.00 2.32
4374 4889 8.163408 CCCATAAATATACTGGTCCTGAATTGA 58.837 37.037 2.23 0.00 0.00 2.57
4378 4893 8.915057 AAATATACTGGTCCTGAATTGATCTG 57.085 34.615 2.23 0.00 0.00 2.90
4379 4894 5.965033 ATACTGGTCCTGAATTGATCTGT 57.035 39.130 2.23 0.00 0.00 3.41
4380 4895 4.647564 ACTGGTCCTGAATTGATCTGTT 57.352 40.909 2.23 0.00 0.00 3.16
4413 4928 1.737735 CTGGCGAACGTGCATCTCA 60.738 57.895 0.00 0.00 36.28 3.27
4417 4932 1.002366 GCGAACGTGCATCTCATCTT 58.998 50.000 0.00 0.00 34.15 2.40
4423 4938 3.519579 ACGTGCATCTCATCTTCTTGAG 58.480 45.455 0.00 0.00 43.70 3.02
4424 4939 3.056250 ACGTGCATCTCATCTTCTTGAGT 60.056 43.478 0.00 0.00 43.02 3.41
4425 4940 4.158579 ACGTGCATCTCATCTTCTTGAGTA 59.841 41.667 0.00 0.00 43.02 2.59
4426 4941 4.739228 CGTGCATCTCATCTTCTTGAGTAG 59.261 45.833 0.00 0.00 43.02 2.57
4427 4942 5.659463 GTGCATCTCATCTTCTTGAGTAGT 58.341 41.667 0.00 0.00 43.02 2.73
4428 4943 6.458888 CGTGCATCTCATCTTCTTGAGTAGTA 60.459 42.308 0.00 0.00 43.02 1.82
4429 4944 7.432869 GTGCATCTCATCTTCTTGAGTAGTAT 58.567 38.462 0.00 0.00 43.02 2.12
4430 4945 7.594758 GTGCATCTCATCTTCTTGAGTAGTATC 59.405 40.741 0.00 0.00 43.02 2.24
4431 4946 7.505248 TGCATCTCATCTTCTTGAGTAGTATCT 59.495 37.037 1.76 0.00 43.02 1.98
4432 4947 8.359642 GCATCTCATCTTCTTGAGTAGTATCTT 58.640 37.037 1.76 0.00 43.02 2.40
4439 4954 8.988546 TCTTCTTGAGTAGTATCTTCTGCTAT 57.011 34.615 0.00 0.00 31.04 2.97
4452 4967 2.875296 TCTGCTATGCCCTGTGTTTTT 58.125 42.857 0.00 0.00 0.00 1.94
4485 5000 3.618774 GCAAAGAGCACTGCTATGC 57.381 52.632 15.98 15.98 46.50 3.14
4498 5013 3.745332 TGCTATGCAGACGATGTTTTG 57.255 42.857 0.00 0.00 33.32 2.44
4499 5014 3.333804 TGCTATGCAGACGATGTTTTGA 58.666 40.909 0.00 0.00 33.32 2.69
4500 5015 3.750652 TGCTATGCAGACGATGTTTTGAA 59.249 39.130 0.00 0.00 33.32 2.69
4501 5016 4.142838 TGCTATGCAGACGATGTTTTGAAG 60.143 41.667 0.00 0.00 33.32 3.02
4502 5017 4.093408 GCTATGCAGACGATGTTTTGAAGA 59.907 41.667 0.00 0.00 0.00 2.87
4503 5018 3.878086 TGCAGACGATGTTTTGAAGAC 57.122 42.857 0.00 0.00 0.00 3.01
4504 5019 2.220824 TGCAGACGATGTTTTGAAGACG 59.779 45.455 0.00 0.00 0.00 4.18
4505 5020 2.475111 GCAGACGATGTTTTGAAGACGA 59.525 45.455 0.00 0.00 0.00 4.20
4506 5021 3.123621 GCAGACGATGTTTTGAAGACGAT 59.876 43.478 0.00 0.00 0.00 3.73
4507 5022 4.377431 GCAGACGATGTTTTGAAGACGATT 60.377 41.667 0.00 0.00 0.00 3.34
4508 5023 5.679906 CAGACGATGTTTTGAAGACGATTT 58.320 37.500 0.00 0.00 0.00 2.17
4509 5024 5.561499 CAGACGATGTTTTGAAGACGATTTG 59.439 40.000 0.00 0.00 0.00 2.32
4510 5025 5.236478 AGACGATGTTTTGAAGACGATTTGT 59.764 36.000 0.00 0.00 0.00 2.83
4511 5026 5.204833 ACGATGTTTTGAAGACGATTTGTG 58.795 37.500 0.00 0.00 0.00 3.33
4512 5027 5.204833 CGATGTTTTGAAGACGATTTGTGT 58.795 37.500 0.00 0.00 0.00 3.72
4513 5028 6.018588 ACGATGTTTTGAAGACGATTTGTGTA 60.019 34.615 0.00 0.00 0.00 2.90
4514 5029 6.299966 CGATGTTTTGAAGACGATTTGTGTAC 59.700 38.462 0.00 0.00 0.00 2.90
4515 5030 5.494618 TGTTTTGAAGACGATTTGTGTACG 58.505 37.500 0.00 0.00 0.00 3.67
4516 5031 5.291371 TGTTTTGAAGACGATTTGTGTACGA 59.709 36.000 0.00 0.00 0.00 3.43
4517 5032 4.959631 TTGAAGACGATTTGTGTACGAC 57.040 40.909 0.00 0.00 0.00 4.34
4518 5033 3.967401 TGAAGACGATTTGTGTACGACA 58.033 40.909 0.00 0.00 0.00 4.35
4519 5034 4.361420 TGAAGACGATTTGTGTACGACAA 58.639 39.130 6.74 6.74 43.11 3.18
4520 5035 4.207635 TGAAGACGATTTGTGTACGACAAC 59.792 41.667 9.47 0.00 44.53 3.32
4521 5036 3.973657 AGACGATTTGTGTACGACAACT 58.026 40.909 9.47 5.83 44.53 3.16
4522 5037 5.112220 AGACGATTTGTGTACGACAACTA 57.888 39.130 9.47 0.00 44.53 2.24
4523 5038 5.522456 AGACGATTTGTGTACGACAACTAA 58.478 37.500 9.47 0.00 44.53 2.24
4524 5039 5.978919 AGACGATTTGTGTACGACAACTAAA 59.021 36.000 9.47 0.00 44.53 1.85
4525 5040 6.643770 AGACGATTTGTGTACGACAACTAAAT 59.356 34.615 9.47 0.00 44.53 1.40
4526 5041 6.814343 ACGATTTGTGTACGACAACTAAATC 58.186 36.000 9.47 6.51 44.53 2.17
4527 5042 6.421501 ACGATTTGTGTACGACAACTAAATCA 59.578 34.615 19.04 0.00 44.53 2.57
4528 5043 7.042590 ACGATTTGTGTACGACAACTAAATCAA 60.043 33.333 19.04 7.18 44.53 2.57
4529 5044 7.474332 CGATTTGTGTACGACAACTAAATCAAG 59.526 37.037 19.04 10.16 44.53 3.02
4530 5045 5.585500 TGTGTACGACAACTAAATCAAGC 57.415 39.130 0.00 0.00 0.00 4.01
4531 5046 4.449743 TGTGTACGACAACTAAATCAAGCC 59.550 41.667 0.00 0.00 0.00 4.35
4532 5047 3.676172 TGTACGACAACTAAATCAAGCCG 59.324 43.478 0.00 0.00 0.00 5.52
4533 5048 2.762745 ACGACAACTAAATCAAGCCGT 58.237 42.857 0.00 0.00 0.00 5.68
4534 5049 2.735134 ACGACAACTAAATCAAGCCGTC 59.265 45.455 0.00 0.00 0.00 4.79
4535 5050 2.093783 CGACAACTAAATCAAGCCGTCC 59.906 50.000 0.00 0.00 0.00 4.79
4536 5051 3.071479 GACAACTAAATCAAGCCGTCCA 58.929 45.455 0.00 0.00 0.00 4.02
4537 5052 3.686016 ACAACTAAATCAAGCCGTCCAT 58.314 40.909 0.00 0.00 0.00 3.41
4538 5053 3.440173 ACAACTAAATCAAGCCGTCCATG 59.560 43.478 0.00 0.00 0.00 3.66
4539 5054 2.017049 ACTAAATCAAGCCGTCCATGC 58.983 47.619 0.00 0.00 0.00 4.06
4540 5055 2.016318 CTAAATCAAGCCGTCCATGCA 58.984 47.619 0.00 0.00 0.00 3.96
4541 5056 1.477553 AAATCAAGCCGTCCATGCAT 58.522 45.000 0.00 0.00 0.00 3.96
4542 5057 2.346766 AATCAAGCCGTCCATGCATA 57.653 45.000 0.00 0.00 0.00 3.14
4543 5058 2.574006 ATCAAGCCGTCCATGCATAT 57.426 45.000 0.00 0.00 0.00 1.78
4544 5059 1.596603 TCAAGCCGTCCATGCATATG 58.403 50.000 0.00 0.00 0.00 1.78
4545 5060 1.140652 TCAAGCCGTCCATGCATATGA 59.859 47.619 6.97 0.00 36.36 2.15
4546 5061 1.265095 CAAGCCGTCCATGCATATGAC 59.735 52.381 6.97 15.27 36.36 3.06
4547 5062 0.761187 AGCCGTCCATGCATATGACT 59.239 50.000 20.22 0.39 36.36 3.41
4548 5063 1.970640 AGCCGTCCATGCATATGACTA 59.029 47.619 20.22 0.00 36.36 2.59
4549 5064 2.368548 AGCCGTCCATGCATATGACTAA 59.631 45.455 20.22 0.00 36.36 2.24
4550 5065 3.138304 GCCGTCCATGCATATGACTAAA 58.862 45.455 20.22 0.00 36.36 1.85
4551 5066 3.187227 GCCGTCCATGCATATGACTAAAG 59.813 47.826 20.22 11.07 36.36 1.85
4552 5067 4.380531 CCGTCCATGCATATGACTAAAGT 58.619 43.478 20.22 0.00 36.36 2.66
4553 5068 4.212004 CCGTCCATGCATATGACTAAAGTG 59.788 45.833 20.22 8.50 36.36 3.16
4554 5069 4.212004 CGTCCATGCATATGACTAAAGTGG 59.788 45.833 20.22 7.42 36.36 4.00
4555 5070 4.516698 GTCCATGCATATGACTAAAGTGGG 59.483 45.833 17.13 3.51 36.36 4.61
4556 5071 3.822735 CCATGCATATGACTAAAGTGGGG 59.177 47.826 6.97 0.00 36.36 4.96
4557 5072 2.930950 TGCATATGACTAAAGTGGGGC 58.069 47.619 6.97 0.00 0.00 5.80
4558 5073 2.230660 GCATATGACTAAAGTGGGGCC 58.769 52.381 6.97 0.00 0.00 5.80
4559 5074 2.422803 GCATATGACTAAAGTGGGGCCA 60.423 50.000 6.97 0.00 0.00 5.36
4560 5075 3.897239 CATATGACTAAAGTGGGGCCAA 58.103 45.455 4.39 0.00 0.00 4.52
4561 5076 2.215942 ATGACTAAAGTGGGGCCAAC 57.784 50.000 1.60 1.60 0.00 3.77
4562 5077 0.250553 TGACTAAAGTGGGGCCAACG 60.251 55.000 4.39 0.00 0.00 4.10
4563 5078 0.958876 GACTAAAGTGGGGCCAACGG 60.959 60.000 4.39 0.24 0.00 4.44
4564 5079 1.377229 CTAAAGTGGGGCCAACGGA 59.623 57.895 4.39 0.00 0.00 4.69
4565 5080 0.034477 CTAAAGTGGGGCCAACGGAT 60.034 55.000 4.39 0.00 0.00 4.18
4566 5081 0.322997 TAAAGTGGGGCCAACGGATG 60.323 55.000 4.39 0.00 0.00 3.51
4585 5100 3.644966 TGGATTAGCCATCGTTTCCTT 57.355 42.857 0.00 0.00 43.33 3.36
4586 5101 3.278574 TGGATTAGCCATCGTTTCCTTG 58.721 45.455 0.00 0.00 43.33 3.61
4587 5102 3.279434 GGATTAGCCATCGTTTCCTTGT 58.721 45.455 0.00 0.00 36.34 3.16
4588 5103 3.312697 GGATTAGCCATCGTTTCCTTGTC 59.687 47.826 0.00 0.00 36.34 3.18
4589 5104 2.004583 TAGCCATCGTTTCCTTGTCG 57.995 50.000 0.00 0.00 0.00 4.35
4590 5105 0.034896 AGCCATCGTTTCCTTGTCGT 59.965 50.000 0.00 0.00 0.00 4.34
4591 5106 0.165944 GCCATCGTTTCCTTGTCGTG 59.834 55.000 0.00 0.00 0.00 4.35
4592 5107 0.165944 CCATCGTTTCCTTGTCGTGC 59.834 55.000 0.00 0.00 0.00 5.34
4593 5108 0.865111 CATCGTTTCCTTGTCGTGCA 59.135 50.000 0.00 0.00 0.00 4.57
4594 5109 1.136252 CATCGTTTCCTTGTCGTGCAG 60.136 52.381 0.00 0.00 0.00 4.41
4595 5110 0.878523 TCGTTTCCTTGTCGTGCAGG 60.879 55.000 0.00 0.00 0.00 4.85
4596 5111 1.282875 GTTTCCTTGTCGTGCAGGC 59.717 57.895 0.35 0.00 0.00 4.85
4597 5112 1.148273 TTTCCTTGTCGTGCAGGCT 59.852 52.632 0.35 0.00 0.00 4.58
4598 5113 1.165907 TTTCCTTGTCGTGCAGGCTG 61.166 55.000 10.94 10.94 0.00 4.85
4599 5114 2.281070 CCTTGTCGTGCAGGCTGT 60.281 61.111 17.16 0.00 0.00 4.40
4600 5115 2.610694 CCTTGTCGTGCAGGCTGTG 61.611 63.158 17.16 6.78 0.00 3.66
4619 5134 2.661866 GTCGTCCGCACAGCAGTT 60.662 61.111 0.00 0.00 0.00 3.16
4620 5135 2.108157 TCGTCCGCACAGCAGTTT 59.892 55.556 0.00 0.00 0.00 2.66
4621 5136 1.954146 TCGTCCGCACAGCAGTTTC 60.954 57.895 0.00 0.00 0.00 2.78
4622 5137 2.551270 GTCCGCACAGCAGTTTCG 59.449 61.111 0.00 0.00 0.00 3.46
4623 5138 1.954146 GTCCGCACAGCAGTTTCGA 60.954 57.895 2.83 0.00 0.00 3.71
4624 5139 1.005037 TCCGCACAGCAGTTTCGAT 60.005 52.632 2.83 0.00 0.00 3.59
4625 5140 1.014044 TCCGCACAGCAGTTTCGATC 61.014 55.000 2.83 0.00 0.00 3.69
4626 5141 1.016130 CCGCACAGCAGTTTCGATCT 61.016 55.000 2.83 0.00 0.00 2.75
4627 5142 0.094216 CGCACAGCAGTTTCGATCTG 59.906 55.000 12.01 12.01 36.18 2.90
4636 5151 3.495193 CAGTTTCGATCTGCAAATGTGG 58.505 45.455 5.44 0.00 0.00 4.17
4637 5152 3.058016 CAGTTTCGATCTGCAAATGTGGT 60.058 43.478 5.44 0.00 0.00 4.16
4638 5153 4.154015 CAGTTTCGATCTGCAAATGTGGTA 59.846 41.667 5.44 0.00 0.00 3.25
4639 5154 4.393062 AGTTTCGATCTGCAAATGTGGTAG 59.607 41.667 0.00 0.00 0.00 3.18
4640 5155 3.885724 TCGATCTGCAAATGTGGTAGA 57.114 42.857 0.00 0.00 0.00 2.59
4641 5156 3.785486 TCGATCTGCAAATGTGGTAGAG 58.215 45.455 0.00 0.00 0.00 2.43
4642 5157 3.195610 TCGATCTGCAAATGTGGTAGAGT 59.804 43.478 0.00 0.00 0.00 3.24
4643 5158 3.308053 CGATCTGCAAATGTGGTAGAGTG 59.692 47.826 0.00 0.00 0.00 3.51
4644 5159 3.057969 TCTGCAAATGTGGTAGAGTGG 57.942 47.619 0.00 0.00 0.00 4.00
4645 5160 2.086869 CTGCAAATGTGGTAGAGTGGG 58.913 52.381 0.00 0.00 0.00 4.61
4646 5161 1.423541 TGCAAATGTGGTAGAGTGGGT 59.576 47.619 0.00 0.00 0.00 4.51
4647 5162 2.640332 TGCAAATGTGGTAGAGTGGGTA 59.360 45.455 0.00 0.00 0.00 3.69
4648 5163 3.265737 TGCAAATGTGGTAGAGTGGGTAT 59.734 43.478 0.00 0.00 0.00 2.73
4649 5164 4.263727 TGCAAATGTGGTAGAGTGGGTATT 60.264 41.667 0.00 0.00 0.00 1.89
4650 5165 5.045505 TGCAAATGTGGTAGAGTGGGTATTA 60.046 40.000 0.00 0.00 0.00 0.98
4651 5166 6.062095 GCAAATGTGGTAGAGTGGGTATTAT 58.938 40.000 0.00 0.00 0.00 1.28
4652 5167 6.204882 GCAAATGTGGTAGAGTGGGTATTATC 59.795 42.308 0.00 0.00 0.00 1.75
4653 5168 6.435292 AATGTGGTAGAGTGGGTATTATCC 57.565 41.667 0.00 0.00 0.00 2.59
4654 5169 5.152306 TGTGGTAGAGTGGGTATTATCCT 57.848 43.478 0.00 0.00 0.00 3.24
4655 5170 5.145564 TGTGGTAGAGTGGGTATTATCCTC 58.854 45.833 0.00 0.00 0.00 3.71
4656 5171 4.527427 GTGGTAGAGTGGGTATTATCCTCC 59.473 50.000 0.00 0.00 0.00 4.30
4657 5172 4.422592 TGGTAGAGTGGGTATTATCCTCCT 59.577 45.833 0.00 0.00 0.00 3.69
4658 5173 4.773149 GGTAGAGTGGGTATTATCCTCCTG 59.227 50.000 0.00 0.00 0.00 3.86
4659 5174 3.243724 AGAGTGGGTATTATCCTCCTGC 58.756 50.000 0.00 0.00 0.00 4.85
4660 5175 3.116551 AGAGTGGGTATTATCCTCCTGCT 60.117 47.826 0.00 0.00 0.00 4.24
4661 5176 2.975489 AGTGGGTATTATCCTCCTGCTG 59.025 50.000 0.00 0.00 0.00 4.41
4662 5177 1.699634 TGGGTATTATCCTCCTGCTGC 59.300 52.381 0.00 0.00 0.00 5.25
4663 5178 1.699634 GGGTATTATCCTCCTGCTGCA 59.300 52.381 0.88 0.88 0.00 4.41
4664 5179 2.551071 GGGTATTATCCTCCTGCTGCAC 60.551 54.545 0.00 0.00 0.00 4.57
4665 5180 2.551071 GGTATTATCCTCCTGCTGCACC 60.551 54.545 0.00 0.00 0.00 5.01
4666 5181 0.475906 ATTATCCTCCTGCTGCACCC 59.524 55.000 0.00 0.00 0.00 4.61
4667 5182 0.621571 TTATCCTCCTGCTGCACCCT 60.622 55.000 0.00 0.00 0.00 4.34
4668 5183 0.621571 TATCCTCCTGCTGCACCCTT 60.622 55.000 0.00 0.00 0.00 3.95
4669 5184 2.207501 ATCCTCCTGCTGCACCCTTG 62.208 60.000 0.00 0.00 0.00 3.61
4670 5185 2.360852 CTCCTGCTGCACCCTTGG 60.361 66.667 0.00 0.00 0.00 3.61
4671 5186 2.853542 TCCTGCTGCACCCTTGGA 60.854 61.111 0.00 0.00 0.00 3.53
4672 5187 2.115910 CCTGCTGCACCCTTGGAA 59.884 61.111 0.00 0.00 0.00 3.53
4673 5188 2.270986 CCTGCTGCACCCTTGGAAC 61.271 63.158 0.00 0.00 0.00 3.62
4674 5189 1.228367 CTGCTGCACCCTTGGAACT 60.228 57.895 0.00 0.00 0.00 3.01
4675 5190 0.825010 CTGCTGCACCCTTGGAACTT 60.825 55.000 0.00 0.00 0.00 2.66
4676 5191 1.108727 TGCTGCACCCTTGGAACTTG 61.109 55.000 0.00 0.00 0.00 3.16
4677 5192 1.662044 CTGCACCCTTGGAACTTGC 59.338 57.895 0.00 0.00 0.00 4.01
4678 5193 1.076412 TGCACCCTTGGAACTTGCA 60.076 52.632 0.00 0.00 40.81 4.08
4679 5194 0.469705 TGCACCCTTGGAACTTGCAT 60.470 50.000 0.00 0.00 38.25 3.96
4680 5195 0.681175 GCACCCTTGGAACTTGCATT 59.319 50.000 0.00 0.00 33.24 3.56
4681 5196 1.892474 GCACCCTTGGAACTTGCATTA 59.108 47.619 0.00 0.00 33.24 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 7.907214 ATAAAAACTTGAGCAGTACTGGTAG 57.093 36.000 26.58 22.21 41.93 3.18
36 39 8.084684 AGGAATCTTCAGCACAAGAATAAAAAC 58.915 33.333 1.81 0.00 35.99 2.43
37 44 8.084073 CAGGAATCTTCAGCACAAGAATAAAAA 58.916 33.333 1.81 0.00 35.99 1.94
47 54 2.902486 AGAGACAGGAATCTTCAGCACA 59.098 45.455 0.00 0.00 0.00 4.57
48 55 3.520569 GAGAGACAGGAATCTTCAGCAC 58.479 50.000 0.00 0.00 0.00 4.40
64 77 4.116328 CCGCGCCAAGACGAGAGA 62.116 66.667 0.00 0.00 34.56 3.10
129 150 2.035832 CACGCCAAAAAGAAATGGAGGT 59.964 45.455 0.00 0.00 40.38 3.85
135 156 1.412343 ACCAGCACGCCAAAAAGAAAT 59.588 42.857 0.00 0.00 0.00 2.17
211 237 2.525284 TAGGACGTGGAAGGAGGGGG 62.525 65.000 0.00 0.00 0.00 5.40
215 241 4.982916 CGATTTATTAGGACGTGGAAGGAG 59.017 45.833 0.00 0.00 0.00 3.69
216 242 4.738541 GCGATTTATTAGGACGTGGAAGGA 60.739 45.833 0.00 0.00 0.00 3.36
219 255 4.365723 GAGCGATTTATTAGGACGTGGAA 58.634 43.478 0.00 0.00 0.00 3.53
257 293 1.073098 GAAGGGAGAAAAGGGGGTGA 58.927 55.000 0.00 0.00 0.00 4.02
265 305 3.596214 CGGAAAGATCGAAGGGAGAAAA 58.404 45.455 0.00 0.00 0.00 2.29
318 361 0.552848 ATGGAGCAAATGGGGACGAT 59.447 50.000 0.00 0.00 0.00 3.73
319 362 0.394216 CATGGAGCAAATGGGGACGA 60.394 55.000 0.00 0.00 0.00 4.20
374 418 1.444119 CGTGTTCTTGGGTGGTGGTG 61.444 60.000 0.00 0.00 0.00 4.17
375 419 1.153046 CGTGTTCTTGGGTGGTGGT 60.153 57.895 0.00 0.00 0.00 4.16
376 420 2.551912 GCGTGTTCTTGGGTGGTGG 61.552 63.158 0.00 0.00 0.00 4.61
428 472 3.752167 GAGGGACGGAGGGAGGGA 61.752 72.222 0.00 0.00 0.00 4.20
439 483 3.716204 GAATTGGGGCCCGAGGGAC 62.716 68.421 19.57 9.40 44.33 4.46
448 492 4.483243 TCGCTCGGGAATTGGGGC 62.483 66.667 0.00 0.00 0.00 5.80
449 493 2.203070 CTCGCTCGGGAATTGGGG 60.203 66.667 0.00 0.00 0.00 4.96
453 497 2.105128 CTCGCTCGCTCGGGAATT 59.895 61.111 0.00 0.00 29.93 2.17
481 534 2.663196 CGAAGGGAAGGCGGAACT 59.337 61.111 0.00 0.00 0.00 3.01
559 938 1.002792 TCGGCGACACATATCTCGAAG 60.003 52.381 4.99 0.00 31.24 3.79
578 957 1.133869 CGGGCGGTGAAACGAATTC 59.866 57.895 0.00 0.00 38.12 2.17
585 964 1.598685 GAAGGAACGGGCGGTGAAA 60.599 57.895 0.00 0.00 0.00 2.69
620 1000 4.095782 CCAACGAACCAGAAGAAAAGAACA 59.904 41.667 0.00 0.00 0.00 3.18
781 1189 4.552166 AATCGGAACTAATCAATTGCCG 57.448 40.909 10.92 10.92 38.68 5.69
858 1266 5.875359 GCGAGAGGAGAGGAGAATTTAAAAA 59.125 40.000 0.00 0.00 0.00 1.94
860 1268 4.440250 CGCGAGAGGAGAGGAGAATTTAAA 60.440 45.833 0.00 0.00 0.00 1.52
861 1269 3.066900 CGCGAGAGGAGAGGAGAATTTAA 59.933 47.826 0.00 0.00 0.00 1.52
862 1270 2.619177 CGCGAGAGGAGAGGAGAATTTA 59.381 50.000 0.00 0.00 0.00 1.40
916 1337 3.118454 CTGAATTGCGTCGGCGGT 61.118 61.111 13.05 0.00 44.10 5.68
1016 1451 2.290896 TGCAGATAAGAAACAGTGGGGG 60.291 50.000 0.00 0.00 0.00 5.40
1135 1588 2.308039 GCGCGTGTCGAAGAAGGTT 61.308 57.895 8.43 0.00 39.69 3.50
1136 1589 2.733593 GCGCGTGTCGAAGAAGGT 60.734 61.111 8.43 0.00 39.69 3.50
1217 1691 3.394836 GCGCTCCTTCCTGTCCCT 61.395 66.667 0.00 0.00 0.00 4.20
1306 1786 1.551908 CCTCCTGCTGCTTCTCCACT 61.552 60.000 0.00 0.00 0.00 4.00
1471 1951 1.676635 GACCTTGCTGCTGCCATCA 60.677 57.895 13.47 0.00 38.71 3.07
1507 1987 1.566231 AGCCTCCGGATGAAGGAAAAT 59.434 47.619 11.34 0.00 37.32 1.82
1510 1990 1.874129 TAAGCCTCCGGATGAAGGAA 58.126 50.000 11.34 0.00 37.32 3.36
1513 1993 2.869636 GCTCATAAGCCTCCGGATGAAG 60.870 54.545 11.34 0.00 43.10 3.02
1516 1996 3.223661 GCTCATAAGCCTCCGGATG 57.776 57.895 3.57 2.55 43.10 3.51
1552 2032 1.837051 AACTGTCCTCGGAGCACCA 60.837 57.895 0.00 0.00 35.59 4.17
1555 2035 0.539669 TCTCAACTGTCCTCGGAGCA 60.540 55.000 0.00 0.00 0.00 4.26
1786 2266 3.303881 TCAGGACTGAACTTCATCGTG 57.696 47.619 0.00 12.73 36.53 4.35
1837 2317 1.149627 CCAAACCCGGACAACTCCA 59.850 57.895 0.73 0.00 36.12 3.86
1921 2401 3.061848 AACCCATTCTTGCGCCGG 61.062 61.111 4.18 0.00 0.00 6.13
2034 2514 4.846779 TCCTCTGAAATTTGGAAAACCG 57.153 40.909 0.00 0.00 0.00 4.44
2080 2560 4.958509 ACAGATCCAATACATCAGCAGAG 58.041 43.478 0.00 0.00 0.00 3.35
2152 2632 7.508977 AGGAGAAACAAAAACAATCCCATTAGA 59.491 33.333 0.00 0.00 0.00 2.10
2324 2805 7.783596 AGGGAAGCAGAGAAAATATGAATTCAT 59.216 33.333 23.75 23.75 40.22 2.57
2325 2806 7.121382 AGGGAAGCAGAGAAAATATGAATTCA 58.879 34.615 11.26 11.26 0.00 2.57
2326 2807 7.579761 AGGGAAGCAGAGAAAATATGAATTC 57.420 36.000 0.00 0.00 0.00 2.17
2355 2836 9.193806 ACTGTCAGCTTCAATCCATAAATAAAT 57.806 29.630 0.00 0.00 0.00 1.40
2360 2841 6.680810 CAAACTGTCAGCTTCAATCCATAAA 58.319 36.000 0.00 0.00 0.00 1.40
2362 2843 4.156556 GCAAACTGTCAGCTTCAATCCATA 59.843 41.667 0.00 0.00 0.00 2.74
2367 2848 3.484407 AGAGCAAACTGTCAGCTTCAAT 58.516 40.909 0.00 0.00 39.02 2.57
2393 2874 1.599542 GGACACAAGTCACTGCAGAAC 59.400 52.381 23.35 17.54 46.80 3.01
2396 2878 1.888215 ATGGACACAAGTCACTGCAG 58.112 50.000 13.48 13.48 46.80 4.41
2415 2897 2.459060 TGTCGTCTGCCGGATTAAAA 57.541 45.000 5.05 0.00 37.11 1.52
2425 2907 2.160219 TCATGAAGCAATTGTCGTCTGC 59.840 45.455 7.40 0.00 36.29 4.26
2445 2927 1.737838 TGCCGTCAATTGATCCAGTC 58.262 50.000 12.12 0.00 0.00 3.51
2454 2936 1.673920 ACACGAACTTTGCCGTCAATT 59.326 42.857 0.00 0.00 36.83 2.32
2572 3054 8.903570 TTTATCAAAATAACTACAATGGTGCG 57.096 30.769 0.00 0.00 0.00 5.34
2674 3156 5.856455 GTCATAAAACCGACAATTTCCAGTG 59.144 40.000 0.00 0.00 32.24 3.66
2755 3237 8.184192 TGAAAACTTGTGATTCTCTTCAAAGAC 58.816 33.333 0.00 0.00 0.00 3.01
2861 3345 6.721318 TGGAAATGGAAGAGCAATAGTAAGT 58.279 36.000 0.00 0.00 0.00 2.24
3166 3653 7.173907 CAGACATAAATGTTGGAGTCTTCACTT 59.826 37.037 0.00 0.00 41.95 3.16
3214 3701 2.401583 TTGCTTGTCGCCATACAGAT 57.598 45.000 0.00 0.00 38.05 2.90
3220 3707 0.749649 TGGTTTTTGCTTGTCGCCAT 59.250 45.000 0.00 0.00 38.05 4.40
3232 3719 4.327680 GCTCAGAGGAGTATGTGGTTTTT 58.672 43.478 0.00 0.00 43.37 1.94
3244 3731 1.269448 GATAGGAAGCGCTCAGAGGAG 59.731 57.143 12.06 0.00 44.33 3.69
3340 3827 4.893424 TTTGCTGGAACTGTACTTGAAC 57.107 40.909 0.00 0.00 0.00 3.18
3421 3908 2.032528 CCTTTGCACGAGGGCTCA 59.967 61.111 7.32 0.00 34.04 4.26
3445 3932 2.351924 TTTCCTCCGGCCAAGTTGCT 62.352 55.000 2.24 0.00 0.00 3.91
3529 4016 3.621805 TTCGCCGTGCTCTGGGAA 61.622 61.111 5.75 5.75 0.00 3.97
3650 4137 1.868498 CCGTTTACTTGCTTTCACCGA 59.132 47.619 0.00 0.00 0.00 4.69
3665 4152 4.722855 GCGCCAATGCTGCCGTTT 62.723 61.111 0.00 0.00 33.06 3.60
3715 4203 2.124151 CCATAGCTGGGGTGCACC 60.124 66.667 28.57 28.57 39.04 5.01
3744 4232 2.712539 CAAGAAACCGCACACGCA 59.287 55.556 0.00 0.00 38.40 5.24
3960 4459 6.479990 CGAAAGAAAGAAAAAGGGCAAAGAAT 59.520 34.615 0.00 0.00 0.00 2.40
4057 4568 1.271597 GCTCCTTCCCACACATTCAGT 60.272 52.381 0.00 0.00 0.00 3.41
4072 4583 0.548682 ACCAGTTCCATCAGGCTCCT 60.549 55.000 0.00 0.00 33.74 3.69
4077 4588 3.967326 TGTATCCTACCAGTTCCATCAGG 59.033 47.826 0.00 0.00 0.00 3.86
4123 4634 8.709386 TTTTGAAGGAATGAACGAATTTTTCA 57.291 26.923 6.04 6.04 37.38 2.69
4141 4652 6.261826 AGAGAACTGGACACTGAATTTTGAAG 59.738 38.462 0.00 0.00 0.00 3.02
4172 4683 2.199236 GGGTACAAGCGTGCTACATAC 58.801 52.381 0.00 0.00 0.00 2.39
4177 4688 0.682852 AACTGGGTACAAGCGTGCTA 59.317 50.000 0.00 0.00 0.00 3.49
4178 4689 0.179029 AAACTGGGTACAAGCGTGCT 60.179 50.000 0.00 0.00 0.00 4.40
4179 4690 0.237498 GAAACTGGGTACAAGCGTGC 59.763 55.000 0.00 0.00 0.00 5.34
4180 4691 1.531149 CTGAAACTGGGTACAAGCGTG 59.469 52.381 0.00 0.00 0.00 5.34
4181 4692 1.414919 TCTGAAACTGGGTACAAGCGT 59.585 47.619 0.00 0.00 0.00 5.07
4182 4693 2.163818 TCTGAAACTGGGTACAAGCG 57.836 50.000 0.00 0.00 0.00 4.68
4183 4694 3.189287 CACATCTGAAACTGGGTACAAGC 59.811 47.826 0.00 0.00 0.00 4.01
4184 4695 3.753272 CCACATCTGAAACTGGGTACAAG 59.247 47.826 0.00 0.00 0.00 3.16
4185 4696 3.137544 ACCACATCTGAAACTGGGTACAA 59.862 43.478 0.00 0.00 0.00 2.41
4187 4698 3.418684 ACCACATCTGAAACTGGGTAC 57.581 47.619 0.00 0.00 0.00 3.34
4188 4699 5.556915 CTTAACCACATCTGAAACTGGGTA 58.443 41.667 0.00 0.00 0.00 3.69
4189 4700 4.398319 CTTAACCACATCTGAAACTGGGT 58.602 43.478 4.30 0.00 0.00 4.51
4190 4701 3.191371 GCTTAACCACATCTGAAACTGGG 59.809 47.826 4.30 0.00 0.00 4.45
4206 4721 2.230660 AGCCAGAACCACAAGCTTAAC 58.769 47.619 0.00 0.00 0.00 2.01
4209 4724 2.887151 ATAGCCAGAACCACAAGCTT 57.113 45.000 0.00 0.00 35.03 3.74
4227 4742 1.256812 GCCCACACCAAACAGCTTAT 58.743 50.000 0.00 0.00 0.00 1.73
4256 4771 6.897413 AGGGACAATAATTACCTTTTCAGCAT 59.103 34.615 0.00 0.00 0.00 3.79
4282 4797 1.194218 CCACCAAAAGGCCCCATTAG 58.806 55.000 0.00 0.00 0.00 1.73
4290 4805 0.608130 GGGATCAACCACCAAAAGGC 59.392 55.000 0.00 0.00 41.20 4.35
4372 4887 1.596934 GTCCGGCCTCAACAGATCA 59.403 57.895 0.00 0.00 0.00 2.92
4373 4888 1.153349 GGTCCGGCCTCAACAGATC 60.153 63.158 0.00 0.00 0.00 2.75
4374 4889 2.990479 GGTCCGGCCTCAACAGAT 59.010 61.111 0.00 0.00 0.00 2.90
4376 4891 3.691342 TCGGTCCGGCCTCAACAG 61.691 66.667 12.29 0.00 34.25 3.16
4377 4892 3.998672 GTCGGTCCGGCCTCAACA 61.999 66.667 12.29 0.00 34.25 3.33
4398 4913 1.002366 AAGATGAGATGCACGTTCGC 58.998 50.000 0.00 0.00 0.00 4.70
4413 4928 7.896383 AGCAGAAGATACTACTCAAGAAGAT 57.104 36.000 0.00 0.00 0.00 2.40
4417 4932 6.015856 GGCATAGCAGAAGATACTACTCAAGA 60.016 42.308 0.00 0.00 0.00 3.02
4423 4938 4.282195 ACAGGGCATAGCAGAAGATACTAC 59.718 45.833 0.00 0.00 0.00 2.73
4424 4939 4.281941 CACAGGGCATAGCAGAAGATACTA 59.718 45.833 0.00 0.00 0.00 1.82
4425 4940 3.070734 CACAGGGCATAGCAGAAGATACT 59.929 47.826 0.00 0.00 0.00 2.12
4426 4941 3.181461 ACACAGGGCATAGCAGAAGATAC 60.181 47.826 0.00 0.00 0.00 2.24
4427 4942 3.041211 ACACAGGGCATAGCAGAAGATA 58.959 45.455 0.00 0.00 0.00 1.98
4428 4943 1.842562 ACACAGGGCATAGCAGAAGAT 59.157 47.619 0.00 0.00 0.00 2.40
4429 4944 1.279496 ACACAGGGCATAGCAGAAGA 58.721 50.000 0.00 0.00 0.00 2.87
4430 4945 2.119801 AACACAGGGCATAGCAGAAG 57.880 50.000 0.00 0.00 0.00 2.85
4431 4946 2.584835 AAACACAGGGCATAGCAGAA 57.415 45.000 0.00 0.00 0.00 3.02
4432 4947 2.584835 AAAACACAGGGCATAGCAGA 57.415 45.000 0.00 0.00 0.00 4.26
4439 4954 1.552337 TGCAAAGAAAAACACAGGGCA 59.448 42.857 0.00 0.00 0.00 5.36
4478 4993 3.333804 TCAAAACATCGTCTGCATAGCA 58.666 40.909 0.00 0.00 36.92 3.49
4479 4994 4.093408 TCTTCAAAACATCGTCTGCATAGC 59.907 41.667 0.00 0.00 0.00 2.97
4480 4995 5.554636 GTCTTCAAAACATCGTCTGCATAG 58.445 41.667 0.00 0.00 0.00 2.23
4481 4996 4.091365 CGTCTTCAAAACATCGTCTGCATA 59.909 41.667 0.00 0.00 0.00 3.14
4482 4997 3.120546 CGTCTTCAAAACATCGTCTGCAT 60.121 43.478 0.00 0.00 0.00 3.96
4483 4998 2.220824 CGTCTTCAAAACATCGTCTGCA 59.779 45.455 0.00 0.00 0.00 4.41
4484 4999 2.475111 TCGTCTTCAAAACATCGTCTGC 59.525 45.455 0.00 0.00 0.00 4.26
4485 5000 4.910746 ATCGTCTTCAAAACATCGTCTG 57.089 40.909 0.00 0.00 0.00 3.51
4486 5001 5.236478 ACAAATCGTCTTCAAAACATCGTCT 59.764 36.000 0.00 0.00 0.00 4.18
4487 5002 5.336990 CACAAATCGTCTTCAAAACATCGTC 59.663 40.000 0.00 0.00 0.00 4.20
4488 5003 5.204833 CACAAATCGTCTTCAAAACATCGT 58.795 37.500 0.00 0.00 0.00 3.73
4489 5004 5.204833 ACACAAATCGTCTTCAAAACATCG 58.795 37.500 0.00 0.00 0.00 3.84
4490 5005 6.299966 CGTACACAAATCGTCTTCAAAACATC 59.700 38.462 0.00 0.00 0.00 3.06
4491 5006 6.018588 TCGTACACAAATCGTCTTCAAAACAT 60.019 34.615 0.00 0.00 0.00 2.71
4492 5007 5.291371 TCGTACACAAATCGTCTTCAAAACA 59.709 36.000 0.00 0.00 0.00 2.83
4493 5008 5.614382 GTCGTACACAAATCGTCTTCAAAAC 59.386 40.000 0.00 0.00 0.00 2.43
4494 5009 5.291371 TGTCGTACACAAATCGTCTTCAAAA 59.709 36.000 0.00 0.00 29.30 2.44
4495 5010 4.804665 TGTCGTACACAAATCGTCTTCAAA 59.195 37.500 0.00 0.00 29.30 2.69
4496 5011 4.361420 TGTCGTACACAAATCGTCTTCAA 58.639 39.130 0.00 0.00 29.30 2.69
4497 5012 3.967401 TGTCGTACACAAATCGTCTTCA 58.033 40.909 0.00 0.00 29.30 3.02
4498 5013 4.443394 AGTTGTCGTACACAAATCGTCTTC 59.557 41.667 10.97 0.36 46.90 2.87
4499 5014 4.365723 AGTTGTCGTACACAAATCGTCTT 58.634 39.130 10.97 0.00 46.90 3.01
4500 5015 3.973657 AGTTGTCGTACACAAATCGTCT 58.026 40.909 10.97 3.69 46.90 4.18
4501 5016 5.811018 TTAGTTGTCGTACACAAATCGTC 57.189 39.130 12.22 2.71 46.90 4.20
4502 5017 6.421501 TGATTTAGTTGTCGTACACAAATCGT 59.578 34.615 12.22 3.69 46.90 3.73
4503 5018 6.813327 TGATTTAGTTGTCGTACACAAATCG 58.187 36.000 12.22 0.00 46.90 3.34
4504 5019 7.268447 GCTTGATTTAGTTGTCGTACACAAATC 59.732 37.037 12.22 11.22 46.90 2.17
4505 5020 7.075741 GCTTGATTTAGTTGTCGTACACAAAT 58.924 34.615 13.05 13.05 46.90 2.32
4506 5021 6.423862 GCTTGATTTAGTTGTCGTACACAAA 58.576 36.000 10.97 0.00 46.90 2.83
4507 5022 5.049954 GGCTTGATTTAGTTGTCGTACACAA 60.050 40.000 6.74 6.74 43.12 3.33
4508 5023 4.449743 GGCTTGATTTAGTTGTCGTACACA 59.550 41.667 0.00 0.00 0.00 3.72
4509 5024 4.433805 CGGCTTGATTTAGTTGTCGTACAC 60.434 45.833 0.00 0.00 0.00 2.90
4510 5025 3.676172 CGGCTTGATTTAGTTGTCGTACA 59.324 43.478 0.00 0.00 0.00 2.90
4511 5026 3.676646 ACGGCTTGATTTAGTTGTCGTAC 59.323 43.478 0.00 0.00 0.00 3.67
4512 5027 3.916761 ACGGCTTGATTTAGTTGTCGTA 58.083 40.909 0.00 0.00 0.00 3.43
4513 5028 2.735134 GACGGCTTGATTTAGTTGTCGT 59.265 45.455 0.00 0.00 0.00 4.34
4514 5029 2.093783 GGACGGCTTGATTTAGTTGTCG 59.906 50.000 0.00 0.00 0.00 4.35
4515 5030 3.071479 TGGACGGCTTGATTTAGTTGTC 58.929 45.455 0.00 0.00 0.00 3.18
4516 5031 3.134574 TGGACGGCTTGATTTAGTTGT 57.865 42.857 0.00 0.00 0.00 3.32
4517 5032 3.731867 GCATGGACGGCTTGATTTAGTTG 60.732 47.826 0.00 0.00 0.00 3.16
4518 5033 2.423538 GCATGGACGGCTTGATTTAGTT 59.576 45.455 0.00 0.00 0.00 2.24
4519 5034 2.017049 GCATGGACGGCTTGATTTAGT 58.983 47.619 0.00 0.00 0.00 2.24
4520 5035 2.016318 TGCATGGACGGCTTGATTTAG 58.984 47.619 0.00 0.00 0.00 1.85
4521 5036 2.121291 TGCATGGACGGCTTGATTTA 57.879 45.000 0.00 0.00 0.00 1.40
4522 5037 1.477553 ATGCATGGACGGCTTGATTT 58.522 45.000 0.00 0.00 0.00 2.17
4523 5038 2.346766 TATGCATGGACGGCTTGATT 57.653 45.000 10.16 0.00 0.00 2.57
4524 5039 2.156917 CATATGCATGGACGGCTTGAT 58.843 47.619 10.16 0.00 0.00 2.57
4525 5040 1.140652 TCATATGCATGGACGGCTTGA 59.859 47.619 10.16 0.00 32.61 3.02
4526 5041 1.265095 GTCATATGCATGGACGGCTTG 59.735 52.381 10.16 0.00 32.61 4.01
4527 5042 1.141657 AGTCATATGCATGGACGGCTT 59.858 47.619 20.72 7.13 32.61 4.35
4528 5043 0.761187 AGTCATATGCATGGACGGCT 59.239 50.000 20.72 7.48 32.61 5.52
4529 5044 2.455674 TAGTCATATGCATGGACGGC 57.544 50.000 20.72 5.60 32.61 5.68
4530 5045 4.212004 CACTTTAGTCATATGCATGGACGG 59.788 45.833 20.72 15.92 32.61 4.79
4531 5046 4.212004 CCACTTTAGTCATATGCATGGACG 59.788 45.833 20.72 12.79 32.61 4.79
4532 5047 4.516698 CCCACTTTAGTCATATGCATGGAC 59.483 45.833 19.85 19.85 32.61 4.02
4533 5048 4.446167 CCCCACTTTAGTCATATGCATGGA 60.446 45.833 10.16 3.95 32.61 3.41
4534 5049 3.822735 CCCCACTTTAGTCATATGCATGG 59.177 47.826 10.16 1.18 32.61 3.66
4535 5050 3.254166 GCCCCACTTTAGTCATATGCATG 59.746 47.826 10.16 0.00 0.00 4.06
4536 5051 3.490348 GCCCCACTTTAGTCATATGCAT 58.510 45.455 3.79 3.79 0.00 3.96
4537 5052 2.422803 GGCCCCACTTTAGTCATATGCA 60.423 50.000 0.00 0.00 0.00 3.96
4538 5053 2.230660 GGCCCCACTTTAGTCATATGC 58.769 52.381 0.00 0.00 0.00 3.14
4539 5054 3.576078 TGGCCCCACTTTAGTCATATG 57.424 47.619 0.00 0.00 0.00 1.78
4540 5055 3.684413 CGTTGGCCCCACTTTAGTCATAT 60.684 47.826 0.00 0.00 0.00 1.78
4541 5056 2.355310 CGTTGGCCCCACTTTAGTCATA 60.355 50.000 0.00 0.00 0.00 2.15
4542 5057 1.613255 CGTTGGCCCCACTTTAGTCAT 60.613 52.381 0.00 0.00 0.00 3.06
4543 5058 0.250553 CGTTGGCCCCACTTTAGTCA 60.251 55.000 0.00 0.00 0.00 3.41
4544 5059 0.958876 CCGTTGGCCCCACTTTAGTC 60.959 60.000 0.00 0.00 0.00 2.59
4545 5060 1.074248 CCGTTGGCCCCACTTTAGT 59.926 57.895 0.00 0.00 0.00 2.24
4546 5061 0.034477 ATCCGTTGGCCCCACTTTAG 60.034 55.000 0.00 0.00 0.00 1.85
4547 5062 0.322997 CATCCGTTGGCCCCACTTTA 60.323 55.000 0.00 0.00 0.00 1.85
4548 5063 1.606313 CATCCGTTGGCCCCACTTT 60.606 57.895 0.00 0.00 0.00 2.66
4549 5064 2.035626 CATCCGTTGGCCCCACTT 59.964 61.111 0.00 0.00 0.00 3.16
4550 5065 4.047125 CCATCCGTTGGCCCCACT 62.047 66.667 0.00 0.00 39.09 4.00
4551 5066 2.854300 AATCCATCCGTTGGCCCCAC 62.854 60.000 0.00 0.00 46.01 4.61
4552 5067 1.282653 TAATCCATCCGTTGGCCCCA 61.283 55.000 0.00 0.00 46.01 4.96
4553 5068 0.537371 CTAATCCATCCGTTGGCCCC 60.537 60.000 0.00 0.00 46.01 5.80
4554 5069 1.172812 GCTAATCCATCCGTTGGCCC 61.173 60.000 0.00 0.00 46.01 5.80
4555 5070 1.172812 GGCTAATCCATCCGTTGGCC 61.173 60.000 0.00 0.00 46.01 5.36
4556 5071 0.465460 TGGCTAATCCATCCGTTGGC 60.465 55.000 0.00 0.00 46.01 4.52
4566 5081 3.279434 ACAAGGAAACGATGGCTAATCC 58.721 45.455 0.00 0.00 30.80 3.01
4567 5082 3.001330 CGACAAGGAAACGATGGCTAATC 59.999 47.826 0.00 0.00 0.00 1.75
4568 5083 2.936498 CGACAAGGAAACGATGGCTAAT 59.064 45.455 0.00 0.00 0.00 1.73
4569 5084 2.289195 ACGACAAGGAAACGATGGCTAA 60.289 45.455 0.00 0.00 0.00 3.09
4570 5085 1.274167 ACGACAAGGAAACGATGGCTA 59.726 47.619 0.00 0.00 0.00 3.93
4571 5086 0.034896 ACGACAAGGAAACGATGGCT 59.965 50.000 0.00 0.00 0.00 4.75
4572 5087 0.165944 CACGACAAGGAAACGATGGC 59.834 55.000 0.00 0.00 0.00 4.40
4573 5088 0.165944 GCACGACAAGGAAACGATGG 59.834 55.000 0.00 0.00 0.00 3.51
4574 5089 0.865111 TGCACGACAAGGAAACGATG 59.135 50.000 0.00 0.00 0.00 3.84
4575 5090 1.148310 CTGCACGACAAGGAAACGAT 58.852 50.000 0.00 0.00 0.00 3.73
4576 5091 0.878523 CCTGCACGACAAGGAAACGA 60.879 55.000 0.00 0.00 0.00 3.85
4577 5092 1.569493 CCTGCACGACAAGGAAACG 59.431 57.895 0.00 0.00 0.00 3.60
4578 5093 1.166531 AGCCTGCACGACAAGGAAAC 61.167 55.000 6.27 0.00 0.00 2.78
4579 5094 1.148273 AGCCTGCACGACAAGGAAA 59.852 52.632 6.27 0.00 0.00 3.13
4580 5095 1.597854 CAGCCTGCACGACAAGGAA 60.598 57.895 6.27 0.00 0.00 3.36
4581 5096 2.031012 CAGCCTGCACGACAAGGA 59.969 61.111 6.27 0.00 0.00 3.36
4582 5097 2.281070 ACAGCCTGCACGACAAGG 60.281 61.111 0.00 0.00 0.00 3.61
4583 5098 2.941333 CACAGCCTGCACGACAAG 59.059 61.111 0.00 0.00 0.00 3.16
4584 5099 3.279116 GCACAGCCTGCACGACAA 61.279 61.111 0.00 0.00 46.29 3.18
4602 5117 2.159272 GAAACTGCTGTGCGGACGAC 62.159 60.000 1.60 0.00 38.46 4.34
4603 5118 1.954146 GAAACTGCTGTGCGGACGA 60.954 57.895 1.60 0.00 38.46 4.20
4604 5119 2.551270 GAAACTGCTGTGCGGACG 59.449 61.111 1.60 0.00 38.46 4.79
4605 5120 1.291877 ATCGAAACTGCTGTGCGGAC 61.292 55.000 15.63 0.00 38.46 4.79
4606 5121 1.005037 ATCGAAACTGCTGTGCGGA 60.005 52.632 15.63 6.43 38.46 5.54
4607 5122 1.016130 AGATCGAAACTGCTGTGCGG 61.016 55.000 15.63 0.00 41.29 5.69
4608 5123 0.094216 CAGATCGAAACTGCTGTGCG 59.906 55.000 9.41 11.37 0.00 5.34
4609 5124 3.963622 CAGATCGAAACTGCTGTGC 57.036 52.632 9.41 0.00 0.00 4.57
4615 5130 3.058016 ACCACATTTGCAGATCGAAACTG 60.058 43.478 15.52 15.52 38.27 3.16
4616 5131 3.149196 ACCACATTTGCAGATCGAAACT 58.851 40.909 0.00 0.00 0.00 2.66
4617 5132 3.559238 ACCACATTTGCAGATCGAAAC 57.441 42.857 0.00 0.00 0.00 2.78
4618 5133 4.574892 TCTACCACATTTGCAGATCGAAA 58.425 39.130 0.00 0.00 0.00 3.46
4619 5134 4.183865 CTCTACCACATTTGCAGATCGAA 58.816 43.478 0.00 0.00 0.00 3.71
4620 5135 3.195610 ACTCTACCACATTTGCAGATCGA 59.804 43.478 0.00 0.00 0.00 3.59
4621 5136 3.308053 CACTCTACCACATTTGCAGATCG 59.692 47.826 0.00 0.00 0.00 3.69
4622 5137 3.624861 CCACTCTACCACATTTGCAGATC 59.375 47.826 0.00 0.00 0.00 2.75
4623 5138 3.614092 CCACTCTACCACATTTGCAGAT 58.386 45.455 0.00 0.00 0.00 2.90
4624 5139 2.290260 CCCACTCTACCACATTTGCAGA 60.290 50.000 0.00 0.00 0.00 4.26
4625 5140 2.086869 CCCACTCTACCACATTTGCAG 58.913 52.381 0.00 0.00 0.00 4.41
4626 5141 1.423541 ACCCACTCTACCACATTTGCA 59.576 47.619 0.00 0.00 0.00 4.08
4627 5142 2.200373 ACCCACTCTACCACATTTGC 57.800 50.000 0.00 0.00 0.00 3.68
4628 5143 6.710744 GGATAATACCCACTCTACCACATTTG 59.289 42.308 0.00 0.00 0.00 2.32
4629 5144 6.619852 AGGATAATACCCACTCTACCACATTT 59.380 38.462 0.00 0.00 0.00 2.32
4630 5145 6.151049 AGGATAATACCCACTCTACCACATT 58.849 40.000 0.00 0.00 0.00 2.71
4631 5146 5.727630 AGGATAATACCCACTCTACCACAT 58.272 41.667 0.00 0.00 0.00 3.21
4632 5147 5.145564 GAGGATAATACCCACTCTACCACA 58.854 45.833 0.00 0.00 0.00 4.17
4633 5148 4.527427 GGAGGATAATACCCACTCTACCAC 59.473 50.000 0.00 0.00 0.00 4.16
4634 5149 4.422592 AGGAGGATAATACCCACTCTACCA 59.577 45.833 0.00 0.00 0.00 3.25
4635 5150 4.773149 CAGGAGGATAATACCCACTCTACC 59.227 50.000 0.00 0.00 0.00 3.18
4636 5151 4.221041 GCAGGAGGATAATACCCACTCTAC 59.779 50.000 0.00 0.00 0.00 2.59
4637 5152 4.108124 AGCAGGAGGATAATACCCACTCTA 59.892 45.833 0.00 0.00 0.00 2.43
4638 5153 3.116551 AGCAGGAGGATAATACCCACTCT 60.117 47.826 0.00 0.00 0.00 3.24
4639 5154 3.007398 CAGCAGGAGGATAATACCCACTC 59.993 52.174 0.00 0.00 0.00 3.51
4640 5155 2.975489 CAGCAGGAGGATAATACCCACT 59.025 50.000 0.00 0.00 0.00 4.00
4641 5156 2.551071 GCAGCAGGAGGATAATACCCAC 60.551 54.545 0.00 0.00 0.00 4.61
4642 5157 1.699634 GCAGCAGGAGGATAATACCCA 59.300 52.381 0.00 0.00 0.00 4.51
4643 5158 1.699634 TGCAGCAGGAGGATAATACCC 59.300 52.381 0.00 0.00 0.00 3.69
4644 5159 2.551071 GGTGCAGCAGGAGGATAATACC 60.551 54.545 11.86 0.00 0.00 2.73
4645 5160 2.551071 GGGTGCAGCAGGAGGATAATAC 60.551 54.545 19.06 0.00 0.00 1.89
4646 5161 1.699634 GGGTGCAGCAGGAGGATAATA 59.300 52.381 19.06 0.00 0.00 0.98
4647 5162 0.475906 GGGTGCAGCAGGAGGATAAT 59.524 55.000 19.06 0.00 0.00 1.28
4648 5163 0.621571 AGGGTGCAGCAGGAGGATAA 60.622 55.000 19.06 0.00 0.00 1.75
4649 5164 0.621571 AAGGGTGCAGCAGGAGGATA 60.622 55.000 19.06 0.00 0.00 2.59
4650 5165 1.927527 AAGGGTGCAGCAGGAGGAT 60.928 57.895 19.06 0.00 0.00 3.24
4651 5166 2.530151 AAGGGTGCAGCAGGAGGA 60.530 61.111 19.06 0.00 0.00 3.71
4652 5167 2.360852 CAAGGGTGCAGCAGGAGG 60.361 66.667 19.06 0.00 0.00 4.30
4653 5168 2.360852 CCAAGGGTGCAGCAGGAG 60.361 66.667 19.06 4.13 0.00 3.69
4654 5169 2.459969 TTCCAAGGGTGCAGCAGGA 61.460 57.895 19.06 17.73 0.00 3.86
4655 5170 2.115910 TTCCAAGGGTGCAGCAGG 59.884 61.111 19.06 15.70 0.00 4.85
4656 5171 0.825010 AAGTTCCAAGGGTGCAGCAG 60.825 55.000 19.06 6.74 0.00 4.24
4657 5172 1.108727 CAAGTTCCAAGGGTGCAGCA 61.109 55.000 19.06 0.00 0.00 4.41
4658 5173 1.662044 CAAGTTCCAAGGGTGCAGC 59.338 57.895 7.55 7.55 0.00 5.25
4659 5174 1.108727 TGCAAGTTCCAAGGGTGCAG 61.109 55.000 0.00 0.00 40.14 4.41
4660 5175 1.076412 TGCAAGTTCCAAGGGTGCA 60.076 52.632 0.00 0.00 42.62 4.57
4661 5176 0.681175 AATGCAAGTTCCAAGGGTGC 59.319 50.000 0.00 0.00 35.75 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.