Multiple sequence alignment - TraesCS2B01G400400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G400400 chr2B 100.000 2252 0 0 1 2252 568743875 568746126 0.000000e+00 4159
1 TraesCS2B01G400400 chr2B 90.980 255 20 2 127 378 252543731 252543477 7.700000e-90 340
2 TraesCS2B01G400400 chr2D 91.520 1757 83 36 521 2245 484071642 484073364 0.000000e+00 2359
3 TraesCS2B01G400400 chr2D 88.626 422 27 7 371 783 484047846 484048255 5.590000e-136 494
4 TraesCS2B01G400400 chr2D 92.623 244 17 1 128 371 608734164 608734406 1.280000e-92 350
5 TraesCS2B01G400400 chr2D 91.339 254 22 0 130 383 115881171 115880918 4.600000e-92 348
6 TraesCS2B01G400400 chr2D 92.245 245 19 0 128 372 476066272 476066516 4.600000e-92 348
7 TraesCS2B01G400400 chr2D 91.667 252 20 1 130 381 490824840 490824590 4.600000e-92 348
8 TraesCS2B01G400400 chr2A 93.470 827 21 9 1437 2245 627926802 627927613 0.000000e+00 1197
9 TraesCS2B01G400400 chr2A 90.179 896 56 19 510 1396 627925930 627926802 0.000000e+00 1138
10 TraesCS2B01G400400 chr2A 92.245 245 18 1 126 370 521325762 521326005 1.660000e-91 346
11 TraesCS2B01G400400 chr2A 88.927 289 20 5 363 642 627916731 627917016 1.660000e-91 346
12 TraesCS2B01G400400 chr3D 94.421 233 13 0 138 370 477341794 477342026 2.130000e-95 359
13 TraesCS2B01G400400 chr3D 92.245 245 19 0 126 370 451432008 451431764 4.600000e-92 348
14 TraesCS2B01G400400 chr7D 90.114 263 22 4 119 378 368589079 368588818 2.770000e-89 339
15 TraesCS2B01G400400 chr7B 82.759 116 17 2 1078 1190 428491951 428491836 1.420000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G400400 chr2B 568743875 568746126 2251 False 4159.0 4159 100.0000 1 2252 1 chr2B.!!$F1 2251
1 TraesCS2B01G400400 chr2D 484071642 484073364 1722 False 2359.0 2359 91.5200 521 2245 1 chr2D.!!$F3 1724
2 TraesCS2B01G400400 chr2A 627925930 627927613 1683 False 1167.5 1197 91.8245 510 2245 2 chr2A.!!$F3 1735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.037232 GCCATCCCGCAGTATAGACC 60.037 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1260 1281 2.483745 CGACCAAGCAGCAGCATG 59.516 61.111 3.17 0.72 45.49 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.779759 CTTACAAAAGCAACACTTGGCA 58.220 40.909 0.00 0.00 39.09 4.92
28 29 2.298411 ACAAAAGCAACACTTGGCAG 57.702 45.000 0.00 0.00 39.09 4.85
29 30 1.134729 ACAAAAGCAACACTTGGCAGG 60.135 47.619 0.00 0.00 39.09 4.85
30 31 1.136695 CAAAAGCAACACTTGGCAGGA 59.863 47.619 2.65 0.00 39.09 3.86
31 32 1.484038 AAAGCAACACTTGGCAGGAA 58.516 45.000 2.65 0.00 39.09 3.36
32 33 1.484038 AAGCAACACTTGGCAGGAAA 58.516 45.000 2.65 0.00 37.17 3.13
33 34 1.484038 AGCAACACTTGGCAGGAAAA 58.516 45.000 2.65 0.00 0.00 2.29
34 35 2.041701 AGCAACACTTGGCAGGAAAAT 58.958 42.857 2.65 0.00 0.00 1.82
35 36 3.230134 AGCAACACTTGGCAGGAAAATA 58.770 40.909 2.65 0.00 0.00 1.40
36 37 3.640967 AGCAACACTTGGCAGGAAAATAA 59.359 39.130 2.65 0.00 0.00 1.40
37 38 3.740832 GCAACACTTGGCAGGAAAATAAC 59.259 43.478 2.65 0.00 0.00 1.89
38 39 4.501400 GCAACACTTGGCAGGAAAATAACT 60.501 41.667 2.65 0.00 0.00 2.24
39 40 5.278758 GCAACACTTGGCAGGAAAATAACTA 60.279 40.000 2.65 0.00 0.00 2.24
40 41 6.381801 CAACACTTGGCAGGAAAATAACTAG 58.618 40.000 2.65 0.00 0.00 2.57
41 42 5.010282 ACACTTGGCAGGAAAATAACTAGG 58.990 41.667 2.65 0.00 0.00 3.02
42 43 4.399303 CACTTGGCAGGAAAATAACTAGGG 59.601 45.833 2.65 0.00 0.00 3.53
43 44 4.291249 ACTTGGCAGGAAAATAACTAGGGA 59.709 41.667 2.65 0.00 0.00 4.20
44 45 4.938575 TGGCAGGAAAATAACTAGGGAA 57.061 40.909 0.00 0.00 0.00 3.97
45 46 5.263872 TGGCAGGAAAATAACTAGGGAAA 57.736 39.130 0.00 0.00 0.00 3.13
46 47 5.646215 TGGCAGGAAAATAACTAGGGAAAA 58.354 37.500 0.00 0.00 0.00 2.29
47 48 5.714806 TGGCAGGAAAATAACTAGGGAAAAG 59.285 40.000 0.00 0.00 0.00 2.27
48 49 5.949952 GGCAGGAAAATAACTAGGGAAAAGA 59.050 40.000 0.00 0.00 0.00 2.52
49 50 6.095580 GGCAGGAAAATAACTAGGGAAAAGAG 59.904 42.308 0.00 0.00 0.00 2.85
50 51 6.404844 GCAGGAAAATAACTAGGGAAAAGAGC 60.405 42.308 0.00 0.00 0.00 4.09
51 52 6.659242 CAGGAAAATAACTAGGGAAAAGAGCA 59.341 38.462 0.00 0.00 0.00 4.26
52 53 7.176690 CAGGAAAATAACTAGGGAAAAGAGCAA 59.823 37.037 0.00 0.00 0.00 3.91
53 54 7.728532 AGGAAAATAACTAGGGAAAAGAGCAAA 59.271 33.333 0.00 0.00 0.00 3.68
54 55 7.813148 GGAAAATAACTAGGGAAAAGAGCAAAC 59.187 37.037 0.00 0.00 0.00 2.93
55 56 7.833285 AAATAACTAGGGAAAAGAGCAAACA 57.167 32.000 0.00 0.00 0.00 2.83
56 57 8.422577 AAATAACTAGGGAAAAGAGCAAACAT 57.577 30.769 0.00 0.00 0.00 2.71
57 58 9.528489 AAATAACTAGGGAAAAGAGCAAACATA 57.472 29.630 0.00 0.00 0.00 2.29
58 59 9.528489 AATAACTAGGGAAAAGAGCAAACATAA 57.472 29.630 0.00 0.00 0.00 1.90
59 60 7.833285 AACTAGGGAAAAGAGCAAACATAAA 57.167 32.000 0.00 0.00 0.00 1.40
60 61 7.215719 ACTAGGGAAAAGAGCAAACATAAAC 57.784 36.000 0.00 0.00 0.00 2.01
61 62 7.004691 ACTAGGGAAAAGAGCAAACATAAACT 58.995 34.615 0.00 0.00 0.00 2.66
62 63 8.161425 ACTAGGGAAAAGAGCAAACATAAACTA 58.839 33.333 0.00 0.00 0.00 2.24
63 64 7.833285 AGGGAAAAGAGCAAACATAAACTAA 57.167 32.000 0.00 0.00 0.00 2.24
64 65 8.422577 AGGGAAAAGAGCAAACATAAACTAAT 57.577 30.769 0.00 0.00 0.00 1.73
65 66 8.870116 AGGGAAAAGAGCAAACATAAACTAATT 58.130 29.630 0.00 0.00 0.00 1.40
83 84 9.886132 AAACTAATTAGATAGAAAAGGAGCGAA 57.114 29.630 19.38 0.00 0.00 4.70
84 85 9.886132 AACTAATTAGATAGAAAAGGAGCGAAA 57.114 29.630 19.38 0.00 0.00 3.46
85 86 9.886132 ACTAATTAGATAGAAAAGGAGCGAAAA 57.114 29.630 19.38 0.00 0.00 2.29
107 108 4.779993 AAGATTGGTGGATTAGACTCCC 57.220 45.455 0.00 0.00 34.12 4.30
108 109 4.014273 AGATTGGTGGATTAGACTCCCT 57.986 45.455 0.00 0.00 34.12 4.20
109 110 4.375313 AGATTGGTGGATTAGACTCCCTT 58.625 43.478 0.00 0.00 34.12 3.95
110 111 4.790790 AGATTGGTGGATTAGACTCCCTTT 59.209 41.667 0.00 0.00 34.12 3.11
111 112 4.569719 TTGGTGGATTAGACTCCCTTTC 57.430 45.455 0.00 0.00 34.12 2.62
112 113 3.803340 TGGTGGATTAGACTCCCTTTCT 58.197 45.455 0.00 0.00 34.12 2.52
113 114 4.175962 TGGTGGATTAGACTCCCTTTCTT 58.824 43.478 0.00 0.00 34.12 2.52
114 115 4.601857 TGGTGGATTAGACTCCCTTTCTTT 59.398 41.667 0.00 0.00 34.12 2.52
115 116 5.186942 GGTGGATTAGACTCCCTTTCTTTC 58.813 45.833 0.00 0.00 34.12 2.62
116 117 5.186942 GTGGATTAGACTCCCTTTCTTTCC 58.813 45.833 0.00 0.00 34.12 3.13
117 118 4.849810 TGGATTAGACTCCCTTTCTTTCCA 59.150 41.667 0.00 0.00 34.34 3.53
118 119 5.492524 TGGATTAGACTCCCTTTCTTTCCAT 59.507 40.000 0.00 0.00 32.95 3.41
119 120 5.825151 GGATTAGACTCCCTTTCTTTCCATG 59.175 44.000 0.00 0.00 30.16 3.66
120 121 3.728385 AGACTCCCTTTCTTTCCATGG 57.272 47.619 4.97 4.97 0.00 3.66
121 122 2.989571 AGACTCCCTTTCTTTCCATGGT 59.010 45.455 12.58 0.00 0.00 3.55
122 123 3.399305 AGACTCCCTTTCTTTCCATGGTT 59.601 43.478 12.58 0.00 0.00 3.67
123 124 4.140924 AGACTCCCTTTCTTTCCATGGTTT 60.141 41.667 12.58 0.00 0.00 3.27
124 125 3.897505 ACTCCCTTTCTTTCCATGGTTTG 59.102 43.478 12.58 3.00 0.00 2.93
125 126 3.897505 CTCCCTTTCTTTCCATGGTTTGT 59.102 43.478 12.58 0.00 0.00 2.83
126 127 5.068215 TCCCTTTCTTTCCATGGTTTGTA 57.932 39.130 12.58 0.00 0.00 2.41
127 128 5.650283 TCCCTTTCTTTCCATGGTTTGTAT 58.350 37.500 12.58 0.00 0.00 2.29
128 129 5.714806 TCCCTTTCTTTCCATGGTTTGTATC 59.285 40.000 12.58 0.00 0.00 2.24
129 130 5.716703 CCCTTTCTTTCCATGGTTTGTATCT 59.283 40.000 12.58 0.00 0.00 1.98
130 131 6.127619 CCCTTTCTTTCCATGGTTTGTATCTC 60.128 42.308 12.58 0.00 0.00 2.75
131 132 6.660949 CCTTTCTTTCCATGGTTTGTATCTCT 59.339 38.462 12.58 0.00 0.00 3.10
132 133 7.829211 CCTTTCTTTCCATGGTTTGTATCTCTA 59.171 37.037 12.58 0.00 0.00 2.43
133 134 8.561738 TTTCTTTCCATGGTTTGTATCTCTAC 57.438 34.615 12.58 0.00 0.00 2.59
134 135 7.496346 TCTTTCCATGGTTTGTATCTCTACT 57.504 36.000 12.58 0.00 0.00 2.57
135 136 7.556844 TCTTTCCATGGTTTGTATCTCTACTC 58.443 38.462 12.58 0.00 0.00 2.59
136 137 7.400339 TCTTTCCATGGTTTGTATCTCTACTCT 59.600 37.037 12.58 0.00 0.00 3.24
137 138 7.496346 TTCCATGGTTTGTATCTCTACTCTT 57.504 36.000 12.58 0.00 0.00 2.85
138 139 8.603898 TTCCATGGTTTGTATCTCTACTCTTA 57.396 34.615 12.58 0.00 0.00 2.10
139 140 8.783660 TCCATGGTTTGTATCTCTACTCTTAT 57.216 34.615 12.58 0.00 0.00 1.73
140 141 9.877222 TCCATGGTTTGTATCTCTACTCTTATA 57.123 33.333 12.58 0.00 0.00 0.98
164 165 5.458041 AAAAACTGAGTTGGTGATGATGG 57.542 39.130 0.00 0.00 0.00 3.51
165 166 3.795688 AACTGAGTTGGTGATGATGGT 57.204 42.857 0.00 0.00 0.00 3.55
166 167 3.063510 ACTGAGTTGGTGATGATGGTG 57.936 47.619 0.00 0.00 0.00 4.17
167 168 2.373169 ACTGAGTTGGTGATGATGGTGT 59.627 45.455 0.00 0.00 0.00 4.16
168 169 2.745821 CTGAGTTGGTGATGATGGTGTG 59.254 50.000 0.00 0.00 0.00 3.82
169 170 2.106338 TGAGTTGGTGATGATGGTGTGT 59.894 45.455 0.00 0.00 0.00 3.72
170 171 2.744202 GAGTTGGTGATGATGGTGTGTC 59.256 50.000 0.00 0.00 0.00 3.67
171 172 2.373169 AGTTGGTGATGATGGTGTGTCT 59.627 45.455 0.00 0.00 0.00 3.41
172 173 2.477845 TGGTGATGATGGTGTGTCTG 57.522 50.000 0.00 0.00 0.00 3.51
173 174 1.089920 GGTGATGATGGTGTGTCTGC 58.910 55.000 0.00 0.00 0.00 4.26
174 175 1.089920 GTGATGATGGTGTGTCTGCC 58.910 55.000 0.00 0.00 0.00 4.85
175 176 0.691904 TGATGATGGTGTGTCTGCCA 59.308 50.000 0.00 0.00 39.33 4.92
179 180 1.304282 ATGGTGTGTCTGCCATCCC 59.696 57.895 0.00 0.00 41.24 3.85
180 181 2.436646 GGTGTGTCTGCCATCCCG 60.437 66.667 0.00 0.00 0.00 5.14
181 182 3.127533 GTGTGTCTGCCATCCCGC 61.128 66.667 0.00 0.00 0.00 6.13
182 183 3.635191 TGTGTCTGCCATCCCGCA 61.635 61.111 0.00 0.00 37.19 5.69
189 190 3.141409 TGCCATCCCGCAGTATAGA 57.859 52.632 0.00 0.00 33.92 1.98
190 191 0.679505 TGCCATCCCGCAGTATAGAC 59.320 55.000 0.00 0.00 33.92 2.59
191 192 0.037232 GCCATCCCGCAGTATAGACC 60.037 60.000 0.00 0.00 0.00 3.85
192 193 0.243907 CCATCCCGCAGTATAGACCG 59.756 60.000 0.00 0.00 0.00 4.79
193 194 0.959553 CATCCCGCAGTATAGACCGT 59.040 55.000 0.00 0.00 0.00 4.83
194 195 1.068472 CATCCCGCAGTATAGACCGTC 60.068 57.143 0.00 0.00 0.00 4.79
195 196 0.820891 TCCCGCAGTATAGACCGTCC 60.821 60.000 0.00 0.00 0.00 4.79
196 197 1.281960 CCGCAGTATAGACCGTCCG 59.718 63.158 0.00 0.00 0.00 4.79
197 198 1.162181 CCGCAGTATAGACCGTCCGA 61.162 60.000 0.00 0.00 0.00 4.55
198 199 0.873054 CGCAGTATAGACCGTCCGAT 59.127 55.000 0.00 0.00 0.00 4.18
199 200 1.136029 CGCAGTATAGACCGTCCGATC 60.136 57.143 0.00 0.00 0.00 3.69
200 201 2.152830 GCAGTATAGACCGTCCGATCT 58.847 52.381 0.00 0.00 0.00 2.75
201 202 3.332919 GCAGTATAGACCGTCCGATCTA 58.667 50.000 0.00 0.00 32.11 1.98
202 203 3.940221 GCAGTATAGACCGTCCGATCTAT 59.060 47.826 8.53 8.53 40.47 1.98
203 204 5.114780 GCAGTATAGACCGTCCGATCTATA 58.885 45.833 6.69 6.69 38.71 1.31
204 205 5.759273 GCAGTATAGACCGTCCGATCTATAT 59.241 44.000 12.62 2.18 40.68 0.86
205 206 6.073657 GCAGTATAGACCGTCCGATCTATATC 60.074 46.154 12.62 7.81 40.68 1.63
206 207 7.211573 CAGTATAGACCGTCCGATCTATATCT 58.788 42.308 12.62 9.45 40.68 1.98
207 208 7.170151 CAGTATAGACCGTCCGATCTATATCTG 59.830 44.444 12.62 15.23 40.68 2.90
208 209 4.554960 AGACCGTCCGATCTATATCTGA 57.445 45.455 0.00 0.00 0.00 3.27
209 210 5.105567 AGACCGTCCGATCTATATCTGAT 57.894 43.478 0.00 0.00 29.47 2.90
210 211 4.878971 AGACCGTCCGATCTATATCTGATG 59.121 45.833 0.00 0.00 34.08 3.07
211 212 3.378742 ACCGTCCGATCTATATCTGATGC 59.621 47.826 0.00 0.00 33.37 3.91
212 213 3.378427 CCGTCCGATCTATATCTGATGCA 59.622 47.826 0.00 0.00 33.37 3.96
213 214 4.037327 CCGTCCGATCTATATCTGATGCAT 59.963 45.833 0.00 0.00 33.37 3.96
214 215 5.239525 CCGTCCGATCTATATCTGATGCATA 59.760 44.000 0.00 0.00 33.37 3.14
215 216 6.369799 CGTCCGATCTATATCTGATGCATAG 58.630 44.000 0.00 1.10 29.23 2.23
216 217 6.203723 CGTCCGATCTATATCTGATGCATAGA 59.796 42.308 0.00 10.88 36.12 1.98
217 218 7.254932 CGTCCGATCTATATCTGATGCATAGAA 60.255 40.741 12.01 0.00 35.50 2.10
218 219 8.409371 GTCCGATCTATATCTGATGCATAGAAA 58.591 37.037 12.01 0.00 35.50 2.52
219 220 8.628280 TCCGATCTATATCTGATGCATAGAAAG 58.372 37.037 12.01 9.58 35.50 2.62
220 221 7.381948 CCGATCTATATCTGATGCATAGAAAGC 59.618 40.741 12.01 6.38 35.50 3.51
222 223 9.597170 GATCTATATCTGATGCATAGAAAGCAA 57.403 33.333 12.01 0.00 46.27 3.91
223 224 9.955102 ATCTATATCTGATGCATAGAAAGCAAA 57.045 29.630 12.01 0.00 46.27 3.68
224 225 9.212641 TCTATATCTGATGCATAGAAAGCAAAC 57.787 33.333 0.00 0.00 46.27 2.93
225 226 9.217278 CTATATCTGATGCATAGAAAGCAAACT 57.783 33.333 0.00 0.00 46.27 2.66
227 228 9.736414 ATATCTGATGCATAGAAAGCAAACTAT 57.264 29.630 0.00 0.00 46.27 2.12
228 229 7.255491 TCTGATGCATAGAAAGCAAACTATG 57.745 36.000 0.00 15.02 46.27 2.23
229 230 7.049754 TCTGATGCATAGAAAGCAAACTATGA 58.950 34.615 20.23 10.71 46.27 2.15
230 231 7.011763 TCTGATGCATAGAAAGCAAACTATGAC 59.988 37.037 20.23 14.28 46.27 3.06
231 232 6.598850 TGATGCATAGAAAGCAAACTATGACA 59.401 34.615 20.23 17.50 46.27 3.58
232 233 6.816134 TGCATAGAAAGCAAACTATGACAA 57.184 33.333 20.23 8.30 44.80 3.18
233 234 7.395190 TGCATAGAAAGCAAACTATGACAAT 57.605 32.000 20.23 0.00 44.80 2.71
234 235 7.829725 TGCATAGAAAGCAAACTATGACAATT 58.170 30.769 20.23 0.00 44.80 2.32
235 236 8.306038 TGCATAGAAAGCAAACTATGACAATTT 58.694 29.630 20.23 0.00 44.80 1.82
236 237 9.143631 GCATAGAAAGCAAACTATGACAATTTT 57.856 29.630 20.23 0.00 44.80 1.82
249 250 9.423061 ACTATGACAATTTTGCAAAAAGATACC 57.577 29.630 27.10 14.67 0.00 2.73
250 251 7.671495 ATGACAATTTTGCAAAAAGATACCC 57.329 32.000 27.10 13.32 0.00 3.69
251 252 5.694006 TGACAATTTTGCAAAAAGATACCCG 59.306 36.000 27.10 12.09 0.00 5.28
252 253 4.450757 ACAATTTTGCAAAAAGATACCCGC 59.549 37.500 27.10 0.00 0.00 6.13
253 254 3.735237 TTTTGCAAAAAGATACCCGCA 57.265 38.095 21.94 0.00 0.00 5.69
254 255 2.715737 TTGCAAAAAGATACCCGCAC 57.284 45.000 0.00 0.00 0.00 5.34
255 256 0.885196 TGCAAAAAGATACCCGCACC 59.115 50.000 0.00 0.00 0.00 5.01
256 257 0.172578 GCAAAAAGATACCCGCACCC 59.827 55.000 0.00 0.00 0.00 4.61
257 258 0.815095 CAAAAAGATACCCGCACCCC 59.185 55.000 0.00 0.00 0.00 4.95
258 259 0.702316 AAAAAGATACCCGCACCCCT 59.298 50.000 0.00 0.00 0.00 4.79
259 260 0.255033 AAAAGATACCCGCACCCCTC 59.745 55.000 0.00 0.00 0.00 4.30
260 261 0.620700 AAAGATACCCGCACCCCTCT 60.621 55.000 0.00 0.00 0.00 3.69
261 262 1.049289 AAGATACCCGCACCCCTCTC 61.049 60.000 0.00 0.00 0.00 3.20
262 263 2.446036 ATACCCGCACCCCTCTCC 60.446 66.667 0.00 0.00 0.00 3.71
263 264 3.326385 ATACCCGCACCCCTCTCCA 62.326 63.158 0.00 0.00 0.00 3.86
266 267 3.402681 CCGCACCCCTCTCCACAT 61.403 66.667 0.00 0.00 0.00 3.21
267 268 2.671070 CGCACCCCTCTCCACATT 59.329 61.111 0.00 0.00 0.00 2.71
268 269 1.002134 CGCACCCCTCTCCACATTT 60.002 57.895 0.00 0.00 0.00 2.32
269 270 1.308069 CGCACCCCTCTCCACATTTG 61.308 60.000 0.00 0.00 0.00 2.32
270 271 1.598701 GCACCCCTCTCCACATTTGC 61.599 60.000 0.00 0.00 0.00 3.68
271 272 0.251297 CACCCCTCTCCACATTTGCA 60.251 55.000 0.00 0.00 0.00 4.08
272 273 0.038744 ACCCCTCTCCACATTTGCAG 59.961 55.000 0.00 0.00 0.00 4.41
273 274 0.329261 CCCCTCTCCACATTTGCAGA 59.671 55.000 0.00 0.00 0.00 4.26
274 275 1.064166 CCCCTCTCCACATTTGCAGAT 60.064 52.381 0.00 0.00 0.00 2.90
275 276 2.173356 CCCCTCTCCACATTTGCAGATA 59.827 50.000 0.00 0.00 0.00 1.98
276 277 3.371917 CCCCTCTCCACATTTGCAGATAA 60.372 47.826 0.00 0.00 0.00 1.75
277 278 4.272489 CCCTCTCCACATTTGCAGATAAA 58.728 43.478 0.00 0.00 0.00 1.40
278 279 4.337555 CCCTCTCCACATTTGCAGATAAAG 59.662 45.833 0.00 0.00 0.00 1.85
279 280 4.201990 CCTCTCCACATTTGCAGATAAAGC 60.202 45.833 0.00 0.00 0.00 3.51
280 281 3.696051 TCTCCACATTTGCAGATAAAGCC 59.304 43.478 0.00 0.00 0.00 4.35
281 282 3.698040 CTCCACATTTGCAGATAAAGCCT 59.302 43.478 0.00 0.00 0.00 4.58
282 283 4.088634 TCCACATTTGCAGATAAAGCCTT 58.911 39.130 0.00 0.00 0.00 4.35
283 284 5.260424 TCCACATTTGCAGATAAAGCCTTA 58.740 37.500 0.00 0.00 0.00 2.69
284 285 5.125417 TCCACATTTGCAGATAAAGCCTTAC 59.875 40.000 0.00 0.00 0.00 2.34
285 286 5.343249 CACATTTGCAGATAAAGCCTTACC 58.657 41.667 0.00 0.00 0.00 2.85
286 287 5.126061 CACATTTGCAGATAAAGCCTTACCT 59.874 40.000 0.00 0.00 0.00 3.08
287 288 5.358160 ACATTTGCAGATAAAGCCTTACCTC 59.642 40.000 0.00 0.00 0.00 3.85
288 289 3.179443 TGCAGATAAAGCCTTACCTCG 57.821 47.619 0.00 0.00 0.00 4.63
289 290 2.500098 TGCAGATAAAGCCTTACCTCGT 59.500 45.455 0.00 0.00 0.00 4.18
290 291 3.055385 TGCAGATAAAGCCTTACCTCGTT 60.055 43.478 0.00 0.00 0.00 3.85
291 292 3.556365 GCAGATAAAGCCTTACCTCGTTC 59.444 47.826 0.00 0.00 0.00 3.95
292 293 4.755411 CAGATAAAGCCTTACCTCGTTCA 58.245 43.478 0.00 0.00 0.00 3.18
293 294 5.360591 CAGATAAAGCCTTACCTCGTTCAT 58.639 41.667 0.00 0.00 0.00 2.57
294 295 5.463724 CAGATAAAGCCTTACCTCGTTCATC 59.536 44.000 0.00 0.00 0.00 2.92
295 296 3.983044 AAAGCCTTACCTCGTTCATCT 57.017 42.857 0.00 0.00 0.00 2.90
296 297 3.983044 AAGCCTTACCTCGTTCATCTT 57.017 42.857 0.00 0.00 0.00 2.40
297 298 3.983044 AGCCTTACCTCGTTCATCTTT 57.017 42.857 0.00 0.00 0.00 2.52
298 299 3.600388 AGCCTTACCTCGTTCATCTTTG 58.400 45.455 0.00 0.00 0.00 2.77
299 300 3.008049 AGCCTTACCTCGTTCATCTTTGT 59.992 43.478 0.00 0.00 0.00 2.83
300 301 3.371285 GCCTTACCTCGTTCATCTTTGTC 59.629 47.826 0.00 0.00 0.00 3.18
301 302 4.822026 CCTTACCTCGTTCATCTTTGTCT 58.178 43.478 0.00 0.00 0.00 3.41
302 303 4.865365 CCTTACCTCGTTCATCTTTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
303 304 5.462530 TTACCTCGTTCATCTTTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
304 305 3.654414 ACCTCGTTCATCTTTGTCTCAC 58.346 45.455 0.00 0.00 0.00 3.51
305 306 3.069586 ACCTCGTTCATCTTTGTCTCACA 59.930 43.478 0.00 0.00 0.00 3.58
306 307 3.430218 CCTCGTTCATCTTTGTCTCACAC 59.570 47.826 0.00 0.00 0.00 3.82
307 308 4.051237 CTCGTTCATCTTTGTCTCACACA 58.949 43.478 0.00 0.00 0.00 3.72
308 309 4.438148 TCGTTCATCTTTGTCTCACACAA 58.562 39.130 0.00 0.00 43.68 3.33
309 310 4.507756 TCGTTCATCTTTGTCTCACACAAG 59.492 41.667 0.00 0.00 45.98 3.16
310 311 4.507756 CGTTCATCTTTGTCTCACACAAGA 59.492 41.667 0.00 0.00 45.98 3.02
311 312 5.178252 CGTTCATCTTTGTCTCACACAAGAT 59.822 40.000 7.61 7.61 45.98 2.40
312 313 6.366061 CGTTCATCTTTGTCTCACACAAGATA 59.634 38.462 10.84 0.00 45.98 1.98
313 314 7.095649 CGTTCATCTTTGTCTCACACAAGATAA 60.096 37.037 10.84 0.00 45.98 1.75
314 315 8.559536 GTTCATCTTTGTCTCACACAAGATAAA 58.440 33.333 10.84 0.00 45.98 1.40
315 316 8.087982 TCATCTTTGTCTCACACAAGATAAAC 57.912 34.615 10.84 0.00 45.98 2.01
316 317 7.714813 TCATCTTTGTCTCACACAAGATAAACA 59.285 33.333 10.84 0.00 45.98 2.83
317 318 7.857734 TCTTTGTCTCACACAAGATAAACAA 57.142 32.000 0.00 0.00 45.98 2.83
318 319 7.693952 TCTTTGTCTCACACAAGATAAACAAC 58.306 34.615 0.00 0.00 45.98 3.32
319 320 7.552687 TCTTTGTCTCACACAAGATAAACAACT 59.447 33.333 0.00 0.00 45.98 3.16
320 321 6.844696 TGTCTCACACAAGATAAACAACTC 57.155 37.500 0.00 0.00 29.30 3.01
321 322 5.462068 TGTCTCACACAAGATAAACAACTCG 59.538 40.000 0.00 0.00 29.30 4.18
322 323 5.462398 GTCTCACACAAGATAAACAACTCGT 59.538 40.000 0.00 0.00 0.00 4.18
323 324 6.639686 GTCTCACACAAGATAAACAACTCGTA 59.360 38.462 0.00 0.00 0.00 3.43
324 325 7.328737 GTCTCACACAAGATAAACAACTCGTAT 59.671 37.037 0.00 0.00 0.00 3.06
325 326 8.517056 TCTCACACAAGATAAACAACTCGTATA 58.483 33.333 0.00 0.00 0.00 1.47
326 327 8.456904 TCACACAAGATAAACAACTCGTATAC 57.543 34.615 0.00 0.00 0.00 1.47
327 328 8.083462 TCACACAAGATAAACAACTCGTATACA 58.917 33.333 3.32 0.00 0.00 2.29
328 329 8.869897 CACACAAGATAAACAACTCGTATACAT 58.130 33.333 3.32 0.00 0.00 2.29
329 330 8.869897 ACACAAGATAAACAACTCGTATACATG 58.130 33.333 3.32 0.00 0.00 3.21
330 331 7.846107 CACAAGATAAACAACTCGTATACATGC 59.154 37.037 3.32 0.00 0.00 4.06
331 332 7.547722 ACAAGATAAACAACTCGTATACATGCA 59.452 33.333 3.32 0.00 0.00 3.96
332 333 8.551205 CAAGATAAACAACTCGTATACATGCAT 58.449 33.333 3.32 0.00 0.00 3.96
333 334 8.299262 AGATAAACAACTCGTATACATGCATC 57.701 34.615 0.00 1.81 0.00 3.91
334 335 8.144478 AGATAAACAACTCGTATACATGCATCT 58.856 33.333 0.00 0.00 0.00 2.90
335 336 6.985188 AAACAACTCGTATACATGCATCTT 57.015 33.333 0.00 0.00 0.00 2.40
336 337 5.973651 ACAACTCGTATACATGCATCTTG 57.026 39.130 0.00 0.00 0.00 3.02
337 338 5.660460 ACAACTCGTATACATGCATCTTGA 58.340 37.500 0.00 0.00 0.00 3.02
338 339 6.283694 ACAACTCGTATACATGCATCTTGAT 58.716 36.000 0.00 0.00 0.00 2.57
339 340 6.201615 ACAACTCGTATACATGCATCTTGATG 59.798 38.462 0.00 6.27 0.00 3.07
340 341 5.847304 ACTCGTATACATGCATCTTGATGT 58.153 37.500 11.61 0.00 36.72 3.06
341 342 6.283694 ACTCGTATACATGCATCTTGATGTT 58.716 36.000 11.61 0.00 34.60 2.71
342 343 6.763135 ACTCGTATACATGCATCTTGATGTTT 59.237 34.615 11.61 0.00 34.60 2.83
343 344 7.042456 ACTCGTATACATGCATCTTGATGTTTC 60.042 37.037 11.61 0.00 34.60 2.78
344 345 6.067039 CGTATACATGCATCTTGATGTTTCG 58.933 40.000 11.61 0.00 34.60 3.46
345 346 6.292328 CGTATACATGCATCTTGATGTTTCGT 60.292 38.462 11.61 7.19 34.60 3.85
346 347 4.087510 ACATGCATCTTGATGTTTCGTG 57.912 40.909 11.61 9.05 27.94 4.35
347 348 2.617250 TGCATCTTGATGTTTCGTGC 57.383 45.000 11.61 0.00 0.00 5.34
348 349 1.878734 TGCATCTTGATGTTTCGTGCA 59.121 42.857 11.61 0.00 38.62 4.57
349 350 2.292845 TGCATCTTGATGTTTCGTGCAA 59.707 40.909 11.61 0.00 38.07 4.08
350 351 2.658325 GCATCTTGATGTTTCGTGCAAC 59.342 45.455 11.61 0.00 0.00 4.17
351 352 3.852939 GCATCTTGATGTTTCGTGCAACA 60.853 43.478 11.61 0.00 40.92 3.33
352 353 3.332761 TCTTGATGTTTCGTGCAACAC 57.667 42.857 0.00 0.00 39.48 3.32
353 354 2.680339 TCTTGATGTTTCGTGCAACACA 59.320 40.909 0.00 0.00 39.48 3.72
354 355 3.314913 TCTTGATGTTTCGTGCAACACAT 59.685 39.130 0.00 0.00 39.48 3.21
355 356 2.997463 TGATGTTTCGTGCAACACATG 58.003 42.857 6.15 0.00 39.48 3.21
356 357 2.287487 TGATGTTTCGTGCAACACATGG 60.287 45.455 0.00 0.00 39.48 3.66
357 358 0.383590 TGTTTCGTGCAACACATGGG 59.616 50.000 0.00 0.00 35.74 4.00
358 359 0.939106 GTTTCGTGCAACACATGGGC 60.939 55.000 0.00 0.00 35.74 5.36
359 360 2.081425 TTTCGTGCAACACATGGGCC 62.081 55.000 0.00 0.00 35.74 5.80
360 361 2.974692 TTCGTGCAACACATGGGCCT 62.975 55.000 4.53 0.00 35.74 5.19
361 362 2.964978 GTGCAACACATGGGCCTC 59.035 61.111 4.53 0.00 36.32 4.70
362 363 1.604593 GTGCAACACATGGGCCTCT 60.605 57.895 4.53 0.00 36.32 3.69
363 364 1.153524 TGCAACACATGGGCCTCTT 59.846 52.632 4.53 0.00 0.00 2.85
364 365 1.180456 TGCAACACATGGGCCTCTTG 61.180 55.000 4.53 4.12 0.00 3.02
365 366 1.880819 GCAACACATGGGCCTCTTGG 61.881 60.000 4.53 0.00 0.00 3.61
366 367 0.540365 CAACACATGGGCCTCTTGGT 60.540 55.000 4.53 0.00 35.27 3.67
367 368 1.072266 AACACATGGGCCTCTTGGTA 58.928 50.000 4.53 0.00 35.27 3.25
368 369 0.620556 ACACATGGGCCTCTTGGTAG 59.379 55.000 4.53 0.00 35.27 3.18
369 370 0.620556 CACATGGGCCTCTTGGTAGT 59.379 55.000 4.53 0.00 35.27 2.73
370 371 1.004745 CACATGGGCCTCTTGGTAGTT 59.995 52.381 4.53 0.00 35.27 2.24
371 372 2.238646 CACATGGGCCTCTTGGTAGTTA 59.761 50.000 4.53 0.00 35.27 2.24
372 373 2.916934 ACATGGGCCTCTTGGTAGTTAA 59.083 45.455 4.53 0.00 35.27 2.01
373 374 3.332485 ACATGGGCCTCTTGGTAGTTAAA 59.668 43.478 4.53 0.00 35.27 1.52
374 375 4.202631 ACATGGGCCTCTTGGTAGTTAAAA 60.203 41.667 4.53 0.00 35.27 1.52
375 376 4.456662 TGGGCCTCTTGGTAGTTAAAAA 57.543 40.909 4.53 0.00 35.27 1.94
376 377 5.005628 TGGGCCTCTTGGTAGTTAAAAAT 57.994 39.130 4.53 0.00 35.27 1.82
377 378 6.142259 TGGGCCTCTTGGTAGTTAAAAATA 57.858 37.500 4.53 0.00 35.27 1.40
378 379 5.947566 TGGGCCTCTTGGTAGTTAAAAATAC 59.052 40.000 4.53 0.00 35.27 1.89
379 380 5.947566 GGGCCTCTTGGTAGTTAAAAATACA 59.052 40.000 0.84 0.00 31.54 2.29
380 381 6.434965 GGGCCTCTTGGTAGTTAAAAATACAA 59.565 38.462 0.84 0.00 31.54 2.41
381 382 7.310664 GGCCTCTTGGTAGTTAAAAATACAAC 58.689 38.462 0.00 0.00 31.54 3.32
382 383 7.040271 GGCCTCTTGGTAGTTAAAAATACAACA 60.040 37.037 0.00 0.00 31.54 3.33
383 384 7.806487 GCCTCTTGGTAGTTAAAAATACAACAC 59.194 37.037 3.12 0.00 31.54 3.32
384 385 8.013378 CCTCTTGGTAGTTAAAAATACAACACG 58.987 37.037 3.12 0.00 31.54 4.49
385 386 7.354257 TCTTGGTAGTTAAAAATACAACACGC 58.646 34.615 3.12 0.00 31.54 5.34
386 387 6.864360 TGGTAGTTAAAAATACAACACGCT 57.136 33.333 3.12 0.00 31.54 5.07
387 388 7.959689 TGGTAGTTAAAAATACAACACGCTA 57.040 32.000 3.12 0.00 31.54 4.26
388 389 8.550710 TGGTAGTTAAAAATACAACACGCTAT 57.449 30.769 3.12 0.00 31.54 2.97
389 390 9.001542 TGGTAGTTAAAAATACAACACGCTATT 57.998 29.630 3.12 0.00 31.54 1.73
390 391 9.481800 GGTAGTTAAAAATACAACACGCTATTC 57.518 33.333 3.12 0.00 31.54 1.75
393 394 8.995220 AGTTAAAAATACAACACGCTATTCTGA 58.005 29.630 0.00 0.00 0.00 3.27
394 395 9.047871 GTTAAAAATACAACACGCTATTCTGAC 57.952 33.333 0.00 0.00 0.00 3.51
395 396 5.796350 AAATACAACACGCTATTCTGACC 57.204 39.130 0.00 0.00 0.00 4.02
396 397 2.831685 ACAACACGCTATTCTGACCA 57.168 45.000 0.00 0.00 0.00 4.02
397 398 3.334583 ACAACACGCTATTCTGACCAT 57.665 42.857 0.00 0.00 0.00 3.55
398 399 4.465632 ACAACACGCTATTCTGACCATA 57.534 40.909 0.00 0.00 0.00 2.74
399 400 5.023533 ACAACACGCTATTCTGACCATAT 57.976 39.130 0.00 0.00 0.00 1.78
400 401 5.428253 ACAACACGCTATTCTGACCATATT 58.572 37.500 0.00 0.00 0.00 1.28
401 402 5.294306 ACAACACGCTATTCTGACCATATTG 59.706 40.000 0.00 0.00 0.00 1.90
402 403 3.809832 ACACGCTATTCTGACCATATTGC 59.190 43.478 0.00 0.00 0.00 3.56
403 404 3.809279 CACGCTATTCTGACCATATTGCA 59.191 43.478 0.00 0.00 0.00 4.08
404 405 3.809832 ACGCTATTCTGACCATATTGCAC 59.190 43.478 0.00 0.00 0.00 4.57
405 406 4.060900 CGCTATTCTGACCATATTGCACT 58.939 43.478 0.00 0.00 0.00 4.40
406 407 5.221441 ACGCTATTCTGACCATATTGCACTA 60.221 40.000 0.00 0.00 0.00 2.74
407 408 5.871524 CGCTATTCTGACCATATTGCACTAT 59.128 40.000 0.00 0.00 0.00 2.12
408 409 6.035435 CGCTATTCTGACCATATTGCACTATC 59.965 42.308 0.00 0.00 0.00 2.08
409 410 6.875726 GCTATTCTGACCATATTGCACTATCA 59.124 38.462 0.00 0.00 0.00 2.15
410 411 7.551974 GCTATTCTGACCATATTGCACTATCAT 59.448 37.037 0.00 0.00 0.00 2.45
411 412 7.918536 ATTCTGACCATATTGCACTATCATC 57.081 36.000 0.00 0.00 0.00 2.92
412 413 6.423776 TCTGACCATATTGCACTATCATCA 57.576 37.500 0.00 1.07 0.00 3.07
413 414 7.012661 TCTGACCATATTGCACTATCATCAT 57.987 36.000 7.05 0.00 0.00 2.45
414 415 7.455891 TCTGACCATATTGCACTATCATCATT 58.544 34.615 7.05 0.00 0.00 2.57
415 416 7.940688 TCTGACCATATTGCACTATCATCATTT 59.059 33.333 7.05 0.00 0.00 2.32
416 417 7.878036 TGACCATATTGCACTATCATCATTTG 58.122 34.615 0.00 0.00 0.00 2.32
417 418 7.720515 TGACCATATTGCACTATCATCATTTGA 59.279 33.333 0.00 0.00 39.12 2.69
418 419 8.645814 ACCATATTGCACTATCATCATTTGAT 57.354 30.769 0.00 0.00 46.86 2.57
419 420 9.743581 ACCATATTGCACTATCATCATTTGATA 57.256 29.630 0.00 0.00 43.43 2.15
424 425 6.958255 TGCACTATCATCATTTGATAAACCG 58.042 36.000 0.00 0.00 44.72 4.44
425 426 5.853282 GCACTATCATCATTTGATAAACCGC 59.147 40.000 0.00 0.00 44.72 5.68
426 427 6.073369 CACTATCATCATTTGATAAACCGCG 58.927 40.000 0.00 0.00 44.72 6.46
427 428 5.989168 ACTATCATCATTTGATAAACCGCGA 59.011 36.000 8.23 0.00 44.72 5.87
428 429 5.749596 ATCATCATTTGATAAACCGCGAA 57.250 34.783 8.23 0.00 43.43 4.70
429 430 5.553290 TCATCATTTGATAAACCGCGAAA 57.447 34.783 8.23 0.00 32.63 3.46
430 431 5.944013 TCATCATTTGATAAACCGCGAAAA 58.056 33.333 8.23 0.00 32.63 2.29
431 432 6.559810 TCATCATTTGATAAACCGCGAAAAT 58.440 32.000 8.23 0.00 32.63 1.82
432 433 6.471841 TCATCATTTGATAAACCGCGAAAATG 59.528 34.615 8.23 11.49 36.70 2.32
433 434 4.560819 TCATTTGATAAACCGCGAAAATGC 59.439 37.500 8.23 0.00 35.81 3.56
434 435 3.840890 TTGATAAACCGCGAAAATGCT 57.159 38.095 8.23 0.00 0.00 3.79
435 436 3.840890 TGATAAACCGCGAAAATGCTT 57.159 38.095 8.23 0.00 0.00 3.91
436 437 3.753842 TGATAAACCGCGAAAATGCTTC 58.246 40.909 8.23 0.00 0.00 3.86
437 438 3.438781 TGATAAACCGCGAAAATGCTTCT 59.561 39.130 8.23 0.00 0.00 2.85
438 439 2.793278 AAACCGCGAAAATGCTTCTT 57.207 40.000 8.23 0.00 0.00 2.52
439 440 2.331809 AACCGCGAAAATGCTTCTTC 57.668 45.000 8.23 0.00 0.00 2.87
440 441 1.523758 ACCGCGAAAATGCTTCTTCT 58.476 45.000 8.23 0.00 0.00 2.85
441 442 1.464997 ACCGCGAAAATGCTTCTTCTC 59.535 47.619 8.23 0.00 0.00 2.87
442 443 1.734465 CCGCGAAAATGCTTCTTCTCT 59.266 47.619 8.23 0.00 0.00 3.10
443 444 2.160417 CCGCGAAAATGCTTCTTCTCTT 59.840 45.455 8.23 0.00 0.00 2.85
444 445 3.365364 CCGCGAAAATGCTTCTTCTCTTT 60.365 43.478 8.23 0.00 0.00 2.52
445 446 3.601211 CGCGAAAATGCTTCTTCTCTTTG 59.399 43.478 0.00 0.00 0.00 2.77
446 447 4.611355 CGCGAAAATGCTTCTTCTCTTTGA 60.611 41.667 0.00 0.00 0.00 2.69
447 448 5.397326 GCGAAAATGCTTCTTCTCTTTGAT 58.603 37.500 0.00 0.00 0.00 2.57
448 449 5.860716 GCGAAAATGCTTCTTCTCTTTGATT 59.139 36.000 0.00 0.00 0.00 2.57
449 450 6.033302 GCGAAAATGCTTCTTCTCTTTGATTC 59.967 38.462 0.00 0.00 0.00 2.52
450 451 7.080099 CGAAAATGCTTCTTCTCTTTGATTCA 58.920 34.615 0.00 0.00 0.00 2.57
451 452 7.592533 CGAAAATGCTTCTTCTCTTTGATTCAA 59.407 33.333 0.00 0.00 0.00 2.69
452 453 8.813643 AAAATGCTTCTTCTCTTTGATTCAAG 57.186 30.769 0.00 0.00 0.00 3.02
453 454 7.521871 AATGCTTCTTCTCTTTGATTCAAGT 57.478 32.000 0.00 0.00 0.00 3.16
454 455 8.627208 AATGCTTCTTCTCTTTGATTCAAGTA 57.373 30.769 0.00 0.00 0.00 2.24
455 456 8.804912 ATGCTTCTTCTCTTTGATTCAAGTAT 57.195 30.769 0.00 0.00 0.00 2.12
456 457 9.896645 ATGCTTCTTCTCTTTGATTCAAGTATA 57.103 29.630 0.00 0.00 0.00 1.47
457 458 9.896645 TGCTTCTTCTCTTTGATTCAAGTATAT 57.103 29.630 0.00 0.00 0.00 0.86
533 534 9.605955 TCAACAATACTCGTGAAATGTTTAATG 57.394 29.630 0.00 0.00 0.00 1.90
541 542 9.180678 ACTCGTGAAATGTTTAATGATTTGAAC 57.819 29.630 0.00 0.00 33.25 3.18
564 565 7.624360 ACGTATCAGCAGAATTTTTGGATTA 57.376 32.000 0.00 0.00 0.00 1.75
566 567 7.968405 ACGTATCAGCAGAATTTTTGGATTAAC 59.032 33.333 0.00 0.00 0.00 2.01
568 569 9.860898 GTATCAGCAGAATTTTTGGATTAACTT 57.139 29.630 0.00 0.00 0.00 2.66
570 571 7.950512 TCAGCAGAATTTTTGGATTAACTTGA 58.049 30.769 0.00 0.00 0.00 3.02
646 664 1.338136 ATCCGAGGGGTTTGCGATCT 61.338 55.000 0.00 0.00 33.83 2.75
649 667 1.165270 CGAGGGGTTTGCGATCTTTT 58.835 50.000 0.00 0.00 0.00 2.27
652 670 3.189702 CGAGGGGTTTGCGATCTTTTTAA 59.810 43.478 0.00 0.00 0.00 1.52
656 674 6.530120 AGGGGTTTGCGATCTTTTTAAAAAT 58.470 32.000 13.55 0.19 0.00 1.82
657 675 6.649141 AGGGGTTTGCGATCTTTTTAAAAATC 59.351 34.615 13.55 8.66 0.00 2.17
658 676 6.649141 GGGGTTTGCGATCTTTTTAAAAATCT 59.351 34.615 13.55 4.59 0.00 2.40
659 677 7.148639 GGGGTTTGCGATCTTTTTAAAAATCTC 60.149 37.037 13.55 11.69 0.00 2.75
660 678 7.383843 GGGTTTGCGATCTTTTTAAAAATCTCA 59.616 33.333 13.55 8.06 0.00 3.27
663 681 8.687824 TTGCGATCTTTTTAAAAATCTCATCC 57.312 30.769 13.55 7.98 0.00 3.51
664 682 8.055279 TGCGATCTTTTTAAAAATCTCATCCT 57.945 30.769 13.55 0.00 0.00 3.24
666 684 7.374491 GCGATCTTTTTAAAAATCTCATCCTCG 59.626 37.037 13.55 12.61 0.00 4.63
667 685 7.374491 CGATCTTTTTAAAAATCTCATCCTCGC 59.626 37.037 13.55 0.00 0.00 5.03
668 686 7.687941 TCTTTTTAAAAATCTCATCCTCGCT 57.312 32.000 13.55 0.00 0.00 4.93
669 687 8.786826 TCTTTTTAAAAATCTCATCCTCGCTA 57.213 30.769 13.55 0.00 0.00 4.26
670 688 8.883731 TCTTTTTAAAAATCTCATCCTCGCTAG 58.116 33.333 13.55 0.00 0.00 3.42
671 689 7.553881 TTTTAAAAATCTCATCCTCGCTAGG 57.446 36.000 0.00 0.00 45.21 3.02
682 700 6.253758 TCATCCTCGCTAGGGAATTATCTTA 58.746 40.000 11.05 0.00 43.84 2.10
729 748 9.374838 GTAGGAATACAGGAAAAAGTAAATCGA 57.625 33.333 0.00 0.00 0.00 3.59
743 762 1.107114 AATCGAGTCCAGCGAGACAT 58.893 50.000 11.11 0.00 41.49 3.06
756 775 1.406069 CGAGACATGGGAGGTTCTTGG 60.406 57.143 0.00 0.00 0.00 3.61
923 944 2.482374 GCGCAGTGCAACAGGATC 59.518 61.111 16.83 0.00 45.45 3.36
939 960 1.134521 GGATCATCAGTACGGGTTGCA 60.135 52.381 0.00 0.00 0.00 4.08
954 975 3.433740 GGGTTGCACTAGCTTATTAGGCT 60.434 47.826 5.57 5.57 42.74 4.58
1200 1221 4.379243 CACTTCCTCCACGGCGCT 62.379 66.667 6.90 0.00 0.00 5.92
1201 1222 4.379243 ACTTCCTCCACGGCGCTG 62.379 66.667 16.39 16.39 0.00 5.18
1299 1320 0.248661 GCATGCTGCTTGCTGATCAG 60.249 55.000 27.19 18.84 40.96 2.90
1353 1374 5.005779 CCATGTTCTAACTCGTGTATTCTGC 59.994 44.000 0.00 0.00 0.00 4.26
1360 1381 2.492088 ACTCGTGTATTCTGCTGCACTA 59.508 45.455 0.00 0.00 30.52 2.74
1365 1386 4.442403 CGTGTATTCTGCTGCACTATGTAG 59.558 45.833 0.00 0.00 33.01 2.74
1434 1465 6.210078 AGTAACTCTCAAGAAGACAAGAACG 58.790 40.000 0.00 0.00 0.00 3.95
1463 1494 1.250154 TACAGCCTGGTGCAATTGGC 61.250 55.000 14.86 14.86 44.83 4.52
1475 1506 2.227865 TGCAATTGGCTCGGTTTTACTC 59.772 45.455 7.72 0.00 45.15 2.59
1478 1509 2.074547 TTGGCTCGGTTTTACTCTCG 57.925 50.000 0.00 0.00 0.00 4.04
1574 1611 8.467598 GTCTGTTTTAATCCCCTCCTTAATTTC 58.532 37.037 0.00 0.00 0.00 2.17
2187 2239 9.710900 AAAAGTGGAAATAAAATCTGAATGTCC 57.289 29.630 0.00 0.00 0.00 4.02
2233 2285 6.618287 TTGTGTTTTGTGTCCTTGATAGAG 57.382 37.500 0.00 0.00 0.00 2.43
2245 2297 8.023706 GTGTCCTTGATAGAGAAAACAAAATCC 58.976 37.037 0.00 0.00 0.00 3.01
2246 2298 7.944554 TGTCCTTGATAGAGAAAACAAAATCCT 59.055 33.333 0.00 0.00 0.00 3.24
2247 2299 8.797438 GTCCTTGATAGAGAAAACAAAATCCTT 58.203 33.333 0.00 0.00 0.00 3.36
2248 2300 8.796475 TCCTTGATAGAGAAAACAAAATCCTTG 58.204 33.333 0.00 0.00 0.00 3.61
2249 2301 7.543520 CCTTGATAGAGAAAACAAAATCCTTGC 59.456 37.037 0.00 0.00 0.00 4.01
2250 2302 6.611381 TGATAGAGAAAACAAAATCCTTGCG 58.389 36.000 0.00 0.00 0.00 4.85
2251 2303 6.429692 TGATAGAGAAAACAAAATCCTTGCGA 59.570 34.615 0.00 0.00 0.00 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.779759 TGCCAAGTGTTGCTTTTGTAAG 58.220 40.909 0.00 0.00 34.69 2.34
8 9 2.100584 CCTGCCAAGTGTTGCTTTTGTA 59.899 45.455 0.00 0.00 34.69 2.41
9 10 1.134729 CCTGCCAAGTGTTGCTTTTGT 60.135 47.619 0.00 0.00 34.69 2.83
10 11 1.136695 TCCTGCCAAGTGTTGCTTTTG 59.863 47.619 0.00 0.00 34.69 2.44
11 12 1.484038 TCCTGCCAAGTGTTGCTTTT 58.516 45.000 0.00 0.00 34.69 2.27
12 13 1.484038 TTCCTGCCAAGTGTTGCTTT 58.516 45.000 0.00 0.00 34.69 3.51
13 14 1.484038 TTTCCTGCCAAGTGTTGCTT 58.516 45.000 0.00 0.00 38.08 3.91
14 15 1.484038 TTTTCCTGCCAAGTGTTGCT 58.516 45.000 0.00 0.00 0.00 3.91
15 16 2.531522 ATTTTCCTGCCAAGTGTTGC 57.468 45.000 0.00 0.00 0.00 4.17
16 17 5.200368 AGTTATTTTCCTGCCAAGTGTTG 57.800 39.130 0.00 0.00 0.00 3.33
17 18 5.476945 CCTAGTTATTTTCCTGCCAAGTGTT 59.523 40.000 0.00 0.00 0.00 3.32
18 19 5.010282 CCTAGTTATTTTCCTGCCAAGTGT 58.990 41.667 0.00 0.00 0.00 3.55
19 20 4.399303 CCCTAGTTATTTTCCTGCCAAGTG 59.601 45.833 0.00 0.00 0.00 3.16
20 21 4.291249 TCCCTAGTTATTTTCCTGCCAAGT 59.709 41.667 0.00 0.00 0.00 3.16
21 22 4.855340 TCCCTAGTTATTTTCCTGCCAAG 58.145 43.478 0.00 0.00 0.00 3.61
22 23 4.938575 TCCCTAGTTATTTTCCTGCCAA 57.061 40.909 0.00 0.00 0.00 4.52
23 24 4.938575 TTCCCTAGTTATTTTCCTGCCA 57.061 40.909 0.00 0.00 0.00 4.92
24 25 5.949952 TCTTTTCCCTAGTTATTTTCCTGCC 59.050 40.000 0.00 0.00 0.00 4.85
25 26 6.404844 GCTCTTTTCCCTAGTTATTTTCCTGC 60.405 42.308 0.00 0.00 0.00 4.85
26 27 6.659242 TGCTCTTTTCCCTAGTTATTTTCCTG 59.341 38.462 0.00 0.00 0.00 3.86
27 28 6.790319 TGCTCTTTTCCCTAGTTATTTTCCT 58.210 36.000 0.00 0.00 0.00 3.36
28 29 7.462571 TTGCTCTTTTCCCTAGTTATTTTCC 57.537 36.000 0.00 0.00 0.00 3.13
29 30 8.357402 TGTTTGCTCTTTTCCCTAGTTATTTTC 58.643 33.333 0.00 0.00 0.00 2.29
30 31 8.245195 TGTTTGCTCTTTTCCCTAGTTATTTT 57.755 30.769 0.00 0.00 0.00 1.82
31 32 7.833285 TGTTTGCTCTTTTCCCTAGTTATTT 57.167 32.000 0.00 0.00 0.00 1.40
32 33 9.528489 TTATGTTTGCTCTTTTCCCTAGTTATT 57.472 29.630 0.00 0.00 0.00 1.40
33 34 9.528489 TTTATGTTTGCTCTTTTCCCTAGTTAT 57.472 29.630 0.00 0.00 0.00 1.89
34 35 8.789762 GTTTATGTTTGCTCTTTTCCCTAGTTA 58.210 33.333 0.00 0.00 0.00 2.24
35 36 7.505923 AGTTTATGTTTGCTCTTTTCCCTAGTT 59.494 33.333 0.00 0.00 0.00 2.24
36 37 7.004691 AGTTTATGTTTGCTCTTTTCCCTAGT 58.995 34.615 0.00 0.00 0.00 2.57
37 38 7.454260 AGTTTATGTTTGCTCTTTTCCCTAG 57.546 36.000 0.00 0.00 0.00 3.02
38 39 8.927675 TTAGTTTATGTTTGCTCTTTTCCCTA 57.072 30.769 0.00 0.00 0.00 3.53
39 40 7.833285 TTAGTTTATGTTTGCTCTTTTCCCT 57.167 32.000 0.00 0.00 0.00 4.20
57 58 9.886132 TTCGCTCCTTTTCTATCTAATTAGTTT 57.114 29.630 12.19 4.48 0.00 2.66
58 59 9.886132 TTTCGCTCCTTTTCTATCTAATTAGTT 57.114 29.630 12.19 6.82 0.00 2.24
59 60 9.886132 TTTTCGCTCCTTTTCTATCTAATTAGT 57.114 29.630 12.19 3.08 0.00 2.24
83 84 5.952347 GGGAGTCTAATCCACCAATCTTTTT 59.048 40.000 0.00 0.00 41.52 1.94
84 85 5.254032 AGGGAGTCTAATCCACCAATCTTTT 59.746 40.000 0.00 0.00 41.52 2.27
85 86 4.790790 AGGGAGTCTAATCCACCAATCTTT 59.209 41.667 0.00 0.00 41.52 2.52
86 87 4.375313 AGGGAGTCTAATCCACCAATCTT 58.625 43.478 0.00 0.00 41.52 2.40
87 88 4.014273 AGGGAGTCTAATCCACCAATCT 57.986 45.455 0.00 0.00 41.52 2.40
88 89 4.779993 AAGGGAGTCTAATCCACCAATC 57.220 45.455 0.00 0.00 41.52 2.67
89 90 4.790790 AGAAAGGGAGTCTAATCCACCAAT 59.209 41.667 0.00 0.00 41.52 3.16
90 91 4.175962 AGAAAGGGAGTCTAATCCACCAA 58.824 43.478 0.00 0.00 41.52 3.67
91 92 3.803340 AGAAAGGGAGTCTAATCCACCA 58.197 45.455 0.00 0.00 41.52 4.17
92 93 4.846168 AAGAAAGGGAGTCTAATCCACC 57.154 45.455 0.00 0.00 41.52 4.61
93 94 5.186942 GGAAAGAAAGGGAGTCTAATCCAC 58.813 45.833 0.00 0.00 41.52 4.02
94 95 4.849810 TGGAAAGAAAGGGAGTCTAATCCA 59.150 41.667 0.00 5.30 41.52 3.41
95 96 5.437191 TGGAAAGAAAGGGAGTCTAATCC 57.563 43.478 0.00 0.00 38.76 3.01
96 97 5.825151 CCATGGAAAGAAAGGGAGTCTAATC 59.175 44.000 5.56 0.00 0.00 1.75
97 98 5.254032 ACCATGGAAAGAAAGGGAGTCTAAT 59.746 40.000 21.47 0.00 0.00 1.73
98 99 4.601857 ACCATGGAAAGAAAGGGAGTCTAA 59.398 41.667 21.47 0.00 0.00 2.10
99 100 4.175962 ACCATGGAAAGAAAGGGAGTCTA 58.824 43.478 21.47 0.00 0.00 2.59
100 101 2.989571 ACCATGGAAAGAAAGGGAGTCT 59.010 45.455 21.47 0.00 0.00 3.24
101 102 3.441500 ACCATGGAAAGAAAGGGAGTC 57.558 47.619 21.47 0.00 0.00 3.36
102 103 3.897505 CAAACCATGGAAAGAAAGGGAGT 59.102 43.478 21.47 0.00 0.00 3.85
103 104 3.897505 ACAAACCATGGAAAGAAAGGGAG 59.102 43.478 21.47 0.00 0.00 4.30
104 105 3.922375 ACAAACCATGGAAAGAAAGGGA 58.078 40.909 21.47 0.00 0.00 4.20
105 106 5.716703 AGATACAAACCATGGAAAGAAAGGG 59.283 40.000 21.47 0.00 0.00 3.95
106 107 6.660949 AGAGATACAAACCATGGAAAGAAAGG 59.339 38.462 21.47 1.20 0.00 3.11
107 108 7.693969 AGAGATACAAACCATGGAAAGAAAG 57.306 36.000 21.47 3.24 0.00 2.62
108 109 8.383175 AGTAGAGATACAAACCATGGAAAGAAA 58.617 33.333 21.47 0.00 0.00 2.52
109 110 7.918076 AGTAGAGATACAAACCATGGAAAGAA 58.082 34.615 21.47 0.56 0.00 2.52
110 111 7.400339 AGAGTAGAGATACAAACCATGGAAAGA 59.600 37.037 21.47 0.00 0.00 2.52
111 112 7.560368 AGAGTAGAGATACAAACCATGGAAAG 58.440 38.462 21.47 9.63 0.00 2.62
112 113 7.496346 AGAGTAGAGATACAAACCATGGAAA 57.504 36.000 21.47 0.00 0.00 3.13
113 114 7.496346 AAGAGTAGAGATACAAACCATGGAA 57.504 36.000 21.47 0.00 0.00 3.53
114 115 8.783660 ATAAGAGTAGAGATACAAACCATGGA 57.216 34.615 21.47 0.00 0.00 3.41
142 143 4.895297 ACCATCATCACCAACTCAGTTTTT 59.105 37.500 0.00 0.00 0.00 1.94
143 144 4.279169 CACCATCATCACCAACTCAGTTTT 59.721 41.667 0.00 0.00 0.00 2.43
144 145 3.822735 CACCATCATCACCAACTCAGTTT 59.177 43.478 0.00 0.00 0.00 2.66
145 146 3.181440 ACACCATCATCACCAACTCAGTT 60.181 43.478 0.00 0.00 0.00 3.16
146 147 2.373169 ACACCATCATCACCAACTCAGT 59.627 45.455 0.00 0.00 0.00 3.41
147 148 2.745821 CACACCATCATCACCAACTCAG 59.254 50.000 0.00 0.00 0.00 3.35
148 149 2.106338 ACACACCATCATCACCAACTCA 59.894 45.455 0.00 0.00 0.00 3.41
149 150 2.744202 GACACACCATCATCACCAACTC 59.256 50.000 0.00 0.00 0.00 3.01
150 151 2.373169 AGACACACCATCATCACCAACT 59.627 45.455 0.00 0.00 0.00 3.16
151 152 2.485426 CAGACACACCATCATCACCAAC 59.515 50.000 0.00 0.00 0.00 3.77
152 153 2.781923 CAGACACACCATCATCACCAA 58.218 47.619 0.00 0.00 0.00 3.67
153 154 1.611410 GCAGACACACCATCATCACCA 60.611 52.381 0.00 0.00 0.00 4.17
154 155 1.089920 GCAGACACACCATCATCACC 58.910 55.000 0.00 0.00 0.00 4.02
155 156 1.089920 GGCAGACACACCATCATCAC 58.910 55.000 0.00 0.00 0.00 3.06
156 157 0.691904 TGGCAGACACACCATCATCA 59.308 50.000 0.00 0.00 0.00 3.07
157 158 2.048444 ATGGCAGACACACCATCATC 57.952 50.000 0.00 0.00 43.26 2.92
162 163 2.756400 GGGATGGCAGACACACCA 59.244 61.111 4.00 0.00 41.06 4.17
163 164 2.436646 CGGGATGGCAGACACACC 60.437 66.667 0.00 0.00 0.00 4.16
164 165 3.127533 GCGGGATGGCAGACACAC 61.128 66.667 0.00 0.00 0.00 3.82
165 166 3.635191 TGCGGGATGGCAGACACA 61.635 61.111 0.00 0.00 38.17 3.72
171 172 0.679505 GTCTATACTGCGGGATGGCA 59.320 55.000 0.00 0.00 41.45 4.92
172 173 0.037232 GGTCTATACTGCGGGATGGC 60.037 60.000 0.00 0.00 0.00 4.40
173 174 0.243907 CGGTCTATACTGCGGGATGG 59.756 60.000 0.00 0.00 0.00 3.51
174 175 0.959553 ACGGTCTATACTGCGGGATG 59.040 55.000 0.00 0.00 35.17 3.51
175 176 1.245732 GACGGTCTATACTGCGGGAT 58.754 55.000 0.00 0.00 35.17 3.85
176 177 0.820891 GGACGGTCTATACTGCGGGA 60.821 60.000 8.23 0.00 35.17 5.14
177 178 1.658673 GGACGGTCTATACTGCGGG 59.341 63.158 8.23 0.00 35.17 6.13
178 179 1.162181 TCGGACGGTCTATACTGCGG 61.162 60.000 8.23 0.00 35.17 5.69
179 180 0.873054 ATCGGACGGTCTATACTGCG 59.127 55.000 8.23 1.37 35.17 5.18
180 181 2.152830 AGATCGGACGGTCTATACTGC 58.847 52.381 5.58 0.00 35.17 4.40
181 182 7.170151 CAGATATAGATCGGACGGTCTATACTG 59.830 44.444 27.45 27.04 40.68 2.74
182 183 7.069702 TCAGATATAGATCGGACGGTCTATACT 59.930 40.741 27.45 22.96 40.68 2.12
183 184 7.208777 TCAGATATAGATCGGACGGTCTATAC 58.791 42.308 27.45 21.72 40.68 1.47
184 185 7.357429 TCAGATATAGATCGGACGGTCTATA 57.643 40.000 27.21 27.21 41.56 1.31
185 186 6.236558 TCAGATATAGATCGGACGGTCTAT 57.763 41.667 25.24 25.24 40.02 1.98
186 187 5.672421 TCAGATATAGATCGGACGGTCTA 57.328 43.478 16.04 16.04 37.15 2.59
187 188 4.554960 TCAGATATAGATCGGACGGTCT 57.445 45.455 12.50 12.50 37.15 3.85
188 189 4.496673 GCATCAGATATAGATCGGACGGTC 60.497 50.000 2.19 0.00 38.82 4.79
189 190 3.378742 GCATCAGATATAGATCGGACGGT 59.621 47.826 2.19 0.00 38.82 4.83
190 191 3.378427 TGCATCAGATATAGATCGGACGG 59.622 47.826 2.19 0.39 38.82 4.79
191 192 4.622701 TGCATCAGATATAGATCGGACG 57.377 45.455 2.19 0.00 38.82 4.79
192 193 7.503521 TCTATGCATCAGATATAGATCGGAC 57.496 40.000 0.19 0.00 38.82 4.79
193 194 8.525290 TTTCTATGCATCAGATATAGATCGGA 57.475 34.615 0.19 2.64 40.05 4.55
194 195 7.381948 GCTTTCTATGCATCAGATATAGATCGG 59.618 40.741 0.19 0.00 37.15 4.18
195 196 7.919621 TGCTTTCTATGCATCAGATATAGATCG 59.080 37.037 0.19 0.00 34.86 3.69
196 197 9.597170 TTGCTTTCTATGCATCAGATATAGATC 57.403 33.333 0.19 0.00 40.34 2.75
197 198 9.955102 TTTGCTTTCTATGCATCAGATATAGAT 57.045 29.630 0.19 0.00 40.34 1.98
198 199 9.212641 GTTTGCTTTCTATGCATCAGATATAGA 57.787 33.333 0.19 0.00 40.34 1.98
199 200 9.217278 AGTTTGCTTTCTATGCATCAGATATAG 57.783 33.333 0.19 0.00 40.34 1.31
201 202 9.736414 ATAGTTTGCTTTCTATGCATCAGATAT 57.264 29.630 0.19 0.00 40.34 1.63
202 203 8.996271 CATAGTTTGCTTTCTATGCATCAGATA 58.004 33.333 0.19 0.00 40.34 1.98
203 204 7.718314 TCATAGTTTGCTTTCTATGCATCAGAT 59.282 33.333 0.19 0.00 41.59 2.90
204 205 7.011763 GTCATAGTTTGCTTTCTATGCATCAGA 59.988 37.037 0.19 1.93 41.59 3.27
205 206 7.130917 GTCATAGTTTGCTTTCTATGCATCAG 58.869 38.462 0.19 0.00 41.59 2.90
206 207 6.598850 TGTCATAGTTTGCTTTCTATGCATCA 59.401 34.615 0.19 0.00 41.59 3.07
207 208 7.019774 TGTCATAGTTTGCTTTCTATGCATC 57.980 36.000 0.19 0.00 41.59 3.91
208 209 7.395190 TTGTCATAGTTTGCTTTCTATGCAT 57.605 32.000 3.79 3.79 41.59 3.96
209 210 6.816134 TTGTCATAGTTTGCTTTCTATGCA 57.184 33.333 13.59 0.00 41.59 3.96
210 211 8.693542 AAATTGTCATAGTTTGCTTTCTATGC 57.306 30.769 13.59 10.77 41.59 3.14
223 224 9.423061 GGTATCTTTTTGCAAAATTGTCATAGT 57.577 29.630 24.39 10.32 0.00 2.12
224 225 8.872845 GGGTATCTTTTTGCAAAATTGTCATAG 58.127 33.333 24.39 16.41 0.00 2.23
225 226 7.543868 CGGGTATCTTTTTGCAAAATTGTCATA 59.456 33.333 24.39 12.99 0.00 2.15
226 227 6.368516 CGGGTATCTTTTTGCAAAATTGTCAT 59.631 34.615 24.39 13.84 0.00 3.06
227 228 5.694006 CGGGTATCTTTTTGCAAAATTGTCA 59.306 36.000 24.39 9.07 0.00 3.58
228 229 5.389411 GCGGGTATCTTTTTGCAAAATTGTC 60.389 40.000 24.39 13.66 0.00 3.18
229 230 4.450757 GCGGGTATCTTTTTGCAAAATTGT 59.549 37.500 24.39 14.99 0.00 2.71
230 231 4.450419 TGCGGGTATCTTTTTGCAAAATTG 59.550 37.500 24.39 19.07 0.00 2.32
231 232 4.450757 GTGCGGGTATCTTTTTGCAAAATT 59.549 37.500 24.39 14.72 33.67 1.82
232 233 3.993736 GTGCGGGTATCTTTTTGCAAAAT 59.006 39.130 24.39 12.94 33.67 1.82
233 234 3.385577 GTGCGGGTATCTTTTTGCAAAA 58.614 40.909 20.46 20.46 33.67 2.44
234 235 2.288518 GGTGCGGGTATCTTTTTGCAAA 60.289 45.455 8.05 8.05 33.67 3.68
235 236 1.271102 GGTGCGGGTATCTTTTTGCAA 59.729 47.619 0.00 0.00 33.67 4.08
236 237 0.885196 GGTGCGGGTATCTTTTTGCA 59.115 50.000 0.00 0.00 0.00 4.08
237 238 0.172578 GGGTGCGGGTATCTTTTTGC 59.827 55.000 0.00 0.00 0.00 3.68
238 239 0.815095 GGGGTGCGGGTATCTTTTTG 59.185 55.000 0.00 0.00 0.00 2.44
239 240 0.702316 AGGGGTGCGGGTATCTTTTT 59.298 50.000 0.00 0.00 0.00 1.94
240 241 0.255033 GAGGGGTGCGGGTATCTTTT 59.745 55.000 0.00 0.00 0.00 2.27
241 242 0.620700 AGAGGGGTGCGGGTATCTTT 60.621 55.000 0.00 0.00 0.00 2.52
242 243 1.003051 AGAGGGGTGCGGGTATCTT 59.997 57.895 0.00 0.00 0.00 2.40
243 244 1.457831 GAGAGGGGTGCGGGTATCT 60.458 63.158 0.00 0.00 0.00 1.98
244 245 2.508751 GGAGAGGGGTGCGGGTATC 61.509 68.421 0.00 0.00 0.00 2.24
245 246 2.446036 GGAGAGGGGTGCGGGTAT 60.446 66.667 0.00 0.00 0.00 2.73
246 247 4.000620 TGGAGAGGGGTGCGGGTA 62.001 66.667 0.00 0.00 0.00 3.69
249 250 2.484287 AAATGTGGAGAGGGGTGCGG 62.484 60.000 0.00 0.00 0.00 5.69
250 251 1.002134 AAATGTGGAGAGGGGTGCG 60.002 57.895 0.00 0.00 0.00 5.34
251 252 1.598701 GCAAATGTGGAGAGGGGTGC 61.599 60.000 0.00 0.00 0.00 5.01
252 253 0.251297 TGCAAATGTGGAGAGGGGTG 60.251 55.000 0.00 0.00 0.00 4.61
253 254 0.038744 CTGCAAATGTGGAGAGGGGT 59.961 55.000 0.00 0.00 45.65 4.95
254 255 0.329261 TCTGCAAATGTGGAGAGGGG 59.671 55.000 2.39 0.00 46.25 4.79
255 256 3.963733 TCTGCAAATGTGGAGAGGG 57.036 52.632 2.39 0.00 46.25 4.30
259 260 3.698040 AGGCTTTATCTGCAAATGTGGAG 59.302 43.478 0.00 0.00 44.23 3.86
260 261 3.700538 AGGCTTTATCTGCAAATGTGGA 58.299 40.909 0.00 0.00 0.00 4.02
261 262 4.460948 AAGGCTTTATCTGCAAATGTGG 57.539 40.909 0.00 0.00 0.00 4.17
262 263 5.126061 AGGTAAGGCTTTATCTGCAAATGTG 59.874 40.000 4.45 0.00 29.02 3.21
263 264 5.264395 AGGTAAGGCTTTATCTGCAAATGT 58.736 37.500 4.45 0.00 29.02 2.71
264 265 5.504665 CGAGGTAAGGCTTTATCTGCAAATG 60.505 44.000 6.03 0.00 30.33 2.32
265 266 4.576463 CGAGGTAAGGCTTTATCTGCAAAT 59.424 41.667 6.03 0.00 30.33 2.32
266 267 3.938963 CGAGGTAAGGCTTTATCTGCAAA 59.061 43.478 6.03 0.00 30.33 3.68
267 268 3.055385 ACGAGGTAAGGCTTTATCTGCAA 60.055 43.478 6.03 0.00 30.33 4.08
268 269 2.500098 ACGAGGTAAGGCTTTATCTGCA 59.500 45.455 6.03 0.00 30.33 4.41
269 270 3.180891 ACGAGGTAAGGCTTTATCTGC 57.819 47.619 6.03 0.00 30.33 4.26
270 271 4.755411 TGAACGAGGTAAGGCTTTATCTG 58.245 43.478 6.03 1.98 30.33 2.90
271 272 5.364157 AGATGAACGAGGTAAGGCTTTATCT 59.636 40.000 4.45 0.14 32.88 1.98
272 273 5.602628 AGATGAACGAGGTAAGGCTTTATC 58.397 41.667 4.45 0.35 0.00 1.75
273 274 5.615925 AGATGAACGAGGTAAGGCTTTAT 57.384 39.130 4.45 0.00 0.00 1.40
274 275 5.416271 AAGATGAACGAGGTAAGGCTTTA 57.584 39.130 4.45 0.00 0.00 1.85
275 276 3.983044 AGATGAACGAGGTAAGGCTTT 57.017 42.857 4.45 0.00 0.00 3.51
276 277 3.983044 AAGATGAACGAGGTAAGGCTT 57.017 42.857 4.58 4.58 0.00 4.35
277 278 3.008049 ACAAAGATGAACGAGGTAAGGCT 59.992 43.478 0.00 0.00 0.00 4.58
278 279 3.335579 ACAAAGATGAACGAGGTAAGGC 58.664 45.455 0.00 0.00 0.00 4.35
279 280 4.822026 AGACAAAGATGAACGAGGTAAGG 58.178 43.478 0.00 0.00 0.00 2.69
280 281 5.346281 GTGAGACAAAGATGAACGAGGTAAG 59.654 44.000 0.00 0.00 0.00 2.34
281 282 5.221362 TGTGAGACAAAGATGAACGAGGTAA 60.221 40.000 0.00 0.00 0.00 2.85
282 283 4.279922 TGTGAGACAAAGATGAACGAGGTA 59.720 41.667 0.00 0.00 0.00 3.08
283 284 3.069586 TGTGAGACAAAGATGAACGAGGT 59.930 43.478 0.00 0.00 0.00 3.85
284 285 3.430218 GTGTGAGACAAAGATGAACGAGG 59.570 47.826 0.00 0.00 0.00 4.63
285 286 4.051237 TGTGTGAGACAAAGATGAACGAG 58.949 43.478 0.00 0.00 0.00 4.18
286 287 4.053469 TGTGTGAGACAAAGATGAACGA 57.947 40.909 0.00 0.00 0.00 3.85
287 288 4.507756 TCTTGTGTGAGACAAAGATGAACG 59.492 41.667 0.00 0.00 44.14 3.95
288 289 5.991328 TCTTGTGTGAGACAAAGATGAAC 57.009 39.130 0.00 0.00 44.14 3.18
289 290 8.559536 GTTTATCTTGTGTGAGACAAAGATGAA 58.440 33.333 13.53 10.44 44.14 2.57
290 291 7.714813 TGTTTATCTTGTGTGAGACAAAGATGA 59.285 33.333 13.53 6.52 44.14 2.92
291 292 7.864686 TGTTTATCTTGTGTGAGACAAAGATG 58.135 34.615 13.53 0.00 44.14 2.90
292 293 8.345565 GTTGTTTATCTTGTGTGAGACAAAGAT 58.654 33.333 0.00 4.98 44.14 2.40
293 294 7.552687 AGTTGTTTATCTTGTGTGAGACAAAGA 59.447 33.333 0.00 0.00 44.14 2.52
294 295 7.697691 AGTTGTTTATCTTGTGTGAGACAAAG 58.302 34.615 0.00 0.00 44.14 2.77
295 296 7.465379 CGAGTTGTTTATCTTGTGTGAGACAAA 60.465 37.037 0.00 0.00 44.14 2.83
296 297 6.019075 CGAGTTGTTTATCTTGTGTGAGACAA 60.019 38.462 0.00 0.00 42.55 3.18
297 298 5.462068 CGAGTTGTTTATCTTGTGTGAGACA 59.538 40.000 0.00 0.00 0.00 3.41
298 299 5.462398 ACGAGTTGTTTATCTTGTGTGAGAC 59.538 40.000 0.00 0.00 0.00 3.36
299 300 5.597806 ACGAGTTGTTTATCTTGTGTGAGA 58.402 37.500 0.00 0.00 0.00 3.27
300 301 5.907197 ACGAGTTGTTTATCTTGTGTGAG 57.093 39.130 0.00 0.00 0.00 3.51
301 302 8.083462 TGTATACGAGTTGTTTATCTTGTGTGA 58.917 33.333 0.00 0.00 31.67 3.58
302 303 8.234887 TGTATACGAGTTGTTTATCTTGTGTG 57.765 34.615 0.00 0.00 31.67 3.82
303 304 8.869897 CATGTATACGAGTTGTTTATCTTGTGT 58.130 33.333 0.00 0.00 31.67 3.72
304 305 7.846107 GCATGTATACGAGTTGTTTATCTTGTG 59.154 37.037 0.00 0.00 31.67 3.33
305 306 7.547722 TGCATGTATACGAGTTGTTTATCTTGT 59.452 33.333 0.00 0.00 33.52 3.16
306 307 7.905126 TGCATGTATACGAGTTGTTTATCTTG 58.095 34.615 0.00 0.00 0.00 3.02
307 308 8.662781 ATGCATGTATACGAGTTGTTTATCTT 57.337 30.769 0.00 0.00 0.00 2.40
308 309 8.144478 AGATGCATGTATACGAGTTGTTTATCT 58.856 33.333 2.46 0.00 0.00 1.98
309 310 8.299262 AGATGCATGTATACGAGTTGTTTATC 57.701 34.615 2.46 0.00 0.00 1.75
310 311 8.551205 CAAGATGCATGTATACGAGTTGTTTAT 58.449 33.333 2.46 0.00 0.00 1.40
311 312 7.762159 TCAAGATGCATGTATACGAGTTGTTTA 59.238 33.333 2.46 0.00 0.00 2.01
312 313 6.593770 TCAAGATGCATGTATACGAGTTGTTT 59.406 34.615 2.46 0.00 0.00 2.83
313 314 6.106003 TCAAGATGCATGTATACGAGTTGTT 58.894 36.000 2.46 0.00 0.00 2.83
314 315 5.660460 TCAAGATGCATGTATACGAGTTGT 58.340 37.500 2.46 0.00 0.00 3.32
315 316 6.201615 ACATCAAGATGCATGTATACGAGTTG 59.798 38.462 2.46 0.00 42.39 3.16
316 317 6.283694 ACATCAAGATGCATGTATACGAGTT 58.716 36.000 2.46 0.00 42.39 3.01
317 318 5.847304 ACATCAAGATGCATGTATACGAGT 58.153 37.500 2.46 0.00 42.39 4.18
318 319 6.775939 AACATCAAGATGCATGTATACGAG 57.224 37.500 2.46 0.00 42.39 4.18
319 320 6.074356 CGAAACATCAAGATGCATGTATACGA 60.074 38.462 2.46 0.00 42.39 3.43
320 321 6.067039 CGAAACATCAAGATGCATGTATACG 58.933 40.000 2.46 0.00 42.39 3.06
321 322 6.847792 CACGAAACATCAAGATGCATGTATAC 59.152 38.462 2.46 0.00 42.39 1.47
322 323 6.511605 GCACGAAACATCAAGATGCATGTATA 60.512 38.462 2.46 0.00 42.39 1.47
323 324 5.731406 GCACGAAACATCAAGATGCATGTAT 60.731 40.000 2.46 0.00 42.39 2.29
324 325 4.437255 GCACGAAACATCAAGATGCATGTA 60.437 41.667 2.46 0.00 42.39 2.29
325 326 3.671433 GCACGAAACATCAAGATGCATGT 60.671 43.478 2.46 0.00 42.39 3.21
326 327 2.850060 GCACGAAACATCAAGATGCATG 59.150 45.455 2.46 0.00 42.39 4.06
327 328 2.488937 TGCACGAAACATCAAGATGCAT 59.511 40.909 9.85 0.00 42.39 3.96
328 329 1.878734 TGCACGAAACATCAAGATGCA 59.121 42.857 9.85 0.00 42.39 3.96
329 330 2.617250 TGCACGAAACATCAAGATGC 57.383 45.000 9.85 0.00 42.39 3.91
330 331 3.665409 GTGTTGCACGAAACATCAAGATG 59.335 43.478 8.45 8.45 41.81 2.90
331 332 3.314913 TGTGTTGCACGAAACATCAAGAT 59.685 39.130 0.00 0.00 41.81 2.40
332 333 2.680339 TGTGTTGCACGAAACATCAAGA 59.320 40.909 0.00 0.00 41.81 3.02
333 334 3.063670 TGTGTTGCACGAAACATCAAG 57.936 42.857 0.00 0.00 41.81 3.02
334 335 3.370276 CATGTGTTGCACGAAACATCAA 58.630 40.909 0.00 0.00 41.81 2.57
335 336 2.287487 CCATGTGTTGCACGAAACATCA 60.287 45.455 0.00 0.00 41.81 3.07
336 337 2.318578 CCATGTGTTGCACGAAACATC 58.681 47.619 0.00 0.00 41.81 3.06
337 338 1.000385 CCCATGTGTTGCACGAAACAT 60.000 47.619 0.00 0.00 41.81 2.71
338 339 0.383590 CCCATGTGTTGCACGAAACA 59.616 50.000 0.00 0.00 37.14 2.83
339 340 0.939106 GCCCATGTGTTGCACGAAAC 60.939 55.000 0.00 0.00 37.14 2.78
340 341 1.361993 GCCCATGTGTTGCACGAAA 59.638 52.632 0.00 0.00 37.14 3.46
341 342 2.560119 GGCCCATGTGTTGCACGAA 61.560 57.895 0.00 0.00 37.14 3.85
342 343 2.983030 GGCCCATGTGTTGCACGA 60.983 61.111 0.00 0.00 37.14 4.35
343 344 2.981560 GAGGCCCATGTGTTGCACG 61.982 63.158 0.00 0.00 37.14 5.34
344 345 1.181098 AAGAGGCCCATGTGTTGCAC 61.181 55.000 0.00 0.00 34.56 4.57
345 346 1.153524 AAGAGGCCCATGTGTTGCA 59.846 52.632 0.00 0.00 0.00 4.08
346 347 1.588082 CAAGAGGCCCATGTGTTGC 59.412 57.895 0.00 0.00 0.00 4.17
347 348 0.540365 ACCAAGAGGCCCATGTGTTG 60.540 55.000 0.00 0.00 39.06 3.33
348 349 1.004745 CTACCAAGAGGCCCATGTGTT 59.995 52.381 0.00 0.00 39.06 3.32
349 350 0.620556 CTACCAAGAGGCCCATGTGT 59.379 55.000 0.00 0.00 39.06 3.72
350 351 0.620556 ACTACCAAGAGGCCCATGTG 59.379 55.000 0.00 0.00 39.06 3.21
351 352 1.372501 AACTACCAAGAGGCCCATGT 58.627 50.000 0.00 0.00 39.06 3.21
352 353 3.644966 TTAACTACCAAGAGGCCCATG 57.355 47.619 0.00 0.00 39.06 3.66
353 354 4.668138 TTTTAACTACCAAGAGGCCCAT 57.332 40.909 0.00 0.00 39.06 4.00
354 355 4.456662 TTTTTAACTACCAAGAGGCCCA 57.543 40.909 0.00 0.00 39.06 5.36
355 356 5.947566 TGTATTTTTAACTACCAAGAGGCCC 59.052 40.000 0.00 0.00 39.06 5.80
356 357 7.040271 TGTTGTATTTTTAACTACCAAGAGGCC 60.040 37.037 0.00 0.00 39.06 5.19
357 358 7.806487 GTGTTGTATTTTTAACTACCAAGAGGC 59.194 37.037 0.00 0.00 39.06 4.70
358 359 8.013378 CGTGTTGTATTTTTAACTACCAAGAGG 58.987 37.037 0.00 0.00 42.21 3.69
359 360 7.532884 GCGTGTTGTATTTTTAACTACCAAGAG 59.467 37.037 0.00 0.00 0.00 2.85
360 361 7.227116 AGCGTGTTGTATTTTTAACTACCAAGA 59.773 33.333 0.00 0.00 0.00 3.02
361 362 7.357303 AGCGTGTTGTATTTTTAACTACCAAG 58.643 34.615 0.00 0.00 0.00 3.61
362 363 7.261829 AGCGTGTTGTATTTTTAACTACCAA 57.738 32.000 0.00 0.00 0.00 3.67
363 364 6.864360 AGCGTGTTGTATTTTTAACTACCA 57.136 33.333 0.00 0.00 0.00 3.25
364 365 9.481800 GAATAGCGTGTTGTATTTTTAACTACC 57.518 33.333 0.00 0.00 0.00 3.18
367 368 8.995220 TCAGAATAGCGTGTTGTATTTTTAACT 58.005 29.630 0.00 0.00 0.00 2.24
368 369 9.047871 GTCAGAATAGCGTGTTGTATTTTTAAC 57.952 33.333 0.00 0.00 0.00 2.01
369 370 8.231837 GGTCAGAATAGCGTGTTGTATTTTTAA 58.768 33.333 0.00 0.00 0.00 1.52
370 371 7.388224 TGGTCAGAATAGCGTGTTGTATTTTTA 59.612 33.333 0.00 0.00 0.00 1.52
371 372 6.205853 TGGTCAGAATAGCGTGTTGTATTTTT 59.794 34.615 0.00 0.00 0.00 1.94
372 373 5.703592 TGGTCAGAATAGCGTGTTGTATTTT 59.296 36.000 0.00 0.00 0.00 1.82
373 374 5.242434 TGGTCAGAATAGCGTGTTGTATTT 58.758 37.500 0.00 0.00 0.00 1.40
374 375 4.827692 TGGTCAGAATAGCGTGTTGTATT 58.172 39.130 0.00 0.00 0.00 1.89
375 376 4.465632 TGGTCAGAATAGCGTGTTGTAT 57.534 40.909 0.00 0.00 0.00 2.29
376 377 3.945981 TGGTCAGAATAGCGTGTTGTA 57.054 42.857 0.00 0.00 0.00 2.41
377 378 2.831685 TGGTCAGAATAGCGTGTTGT 57.168 45.000 0.00 0.00 0.00 3.32
378 379 5.741425 CAATATGGTCAGAATAGCGTGTTG 58.259 41.667 0.00 0.00 31.64 3.33
379 380 4.273480 GCAATATGGTCAGAATAGCGTGTT 59.727 41.667 0.00 0.00 0.00 3.32
380 381 3.809832 GCAATATGGTCAGAATAGCGTGT 59.190 43.478 0.00 0.00 0.00 4.49
381 382 3.809279 TGCAATATGGTCAGAATAGCGTG 59.191 43.478 0.00 0.00 0.00 5.34
382 383 3.809832 GTGCAATATGGTCAGAATAGCGT 59.190 43.478 0.00 0.00 0.00 5.07
383 384 4.060900 AGTGCAATATGGTCAGAATAGCG 58.939 43.478 0.00 0.00 0.00 4.26
384 385 6.875726 TGATAGTGCAATATGGTCAGAATAGC 59.124 38.462 12.08 0.00 0.00 2.97
385 386 9.096160 GATGATAGTGCAATATGGTCAGAATAG 57.904 37.037 12.08 0.00 0.00 1.73
386 387 8.596293 TGATGATAGTGCAATATGGTCAGAATA 58.404 33.333 12.08 0.00 0.00 1.75
387 388 7.455891 TGATGATAGTGCAATATGGTCAGAAT 58.544 34.615 12.08 0.00 0.00 2.40
388 389 6.829849 TGATGATAGTGCAATATGGTCAGAA 58.170 36.000 12.08 0.00 0.00 3.02
389 390 6.423776 TGATGATAGTGCAATATGGTCAGA 57.576 37.500 12.08 0.00 0.00 3.27
390 391 7.683437 AATGATGATAGTGCAATATGGTCAG 57.317 36.000 12.08 0.00 0.00 3.51
391 392 7.720515 TCAAATGATGATAGTGCAATATGGTCA 59.279 33.333 12.08 14.50 31.50 4.02
392 393 8.102800 TCAAATGATGATAGTGCAATATGGTC 57.897 34.615 12.08 9.51 31.50 4.02
407 408 5.553290 TTTCGCGGTTTATCAAATGATGA 57.447 34.783 6.13 0.00 43.67 2.92
408 409 6.630015 CATTTTCGCGGTTTATCAAATGATG 58.370 36.000 6.13 0.00 34.80 3.07
409 410 5.231991 GCATTTTCGCGGTTTATCAAATGAT 59.768 36.000 6.13 1.01 34.80 2.45
410 411 4.560819 GCATTTTCGCGGTTTATCAAATGA 59.439 37.500 6.13 0.00 34.80 2.57
411 412 4.562394 AGCATTTTCGCGGTTTATCAAATG 59.438 37.500 6.13 10.57 35.58 2.32
412 413 4.743493 AGCATTTTCGCGGTTTATCAAAT 58.257 34.783 6.13 0.00 36.85 2.32
413 414 4.167554 AGCATTTTCGCGGTTTATCAAA 57.832 36.364 6.13 0.00 36.85 2.69
414 415 3.840890 AGCATTTTCGCGGTTTATCAA 57.159 38.095 6.13 0.00 36.85 2.57
415 416 3.438781 AGAAGCATTTTCGCGGTTTATCA 59.561 39.130 6.13 0.00 36.85 2.15
416 417 4.016113 AGAAGCATTTTCGCGGTTTATC 57.984 40.909 6.13 0.00 36.85 1.75
417 418 4.156008 AGAAGAAGCATTTTCGCGGTTTAT 59.844 37.500 6.13 0.00 36.85 1.40
418 419 3.500680 AGAAGAAGCATTTTCGCGGTTTA 59.499 39.130 6.13 0.00 36.85 2.01
419 420 2.293399 AGAAGAAGCATTTTCGCGGTTT 59.707 40.909 6.13 0.00 36.85 3.27
420 421 1.880027 AGAAGAAGCATTTTCGCGGTT 59.120 42.857 6.13 0.00 36.85 4.44
421 422 1.464997 GAGAAGAAGCATTTTCGCGGT 59.535 47.619 6.13 0.00 36.85 5.68
422 423 1.734465 AGAGAAGAAGCATTTTCGCGG 59.266 47.619 6.13 0.00 36.85 6.46
423 424 3.461946 AAGAGAAGAAGCATTTTCGCG 57.538 42.857 0.00 0.00 36.85 5.87
424 425 4.787598 TCAAAGAGAAGAAGCATTTTCGC 58.212 39.130 0.00 0.00 0.00 4.70
425 426 7.080099 TGAATCAAAGAGAAGAAGCATTTTCG 58.920 34.615 0.00 0.00 0.00 3.46
426 427 8.807667 TTGAATCAAAGAGAAGAAGCATTTTC 57.192 30.769 0.00 0.00 0.00 2.29
427 428 8.419442 ACTTGAATCAAAGAGAAGAAGCATTTT 58.581 29.630 0.00 0.00 0.00 1.82
428 429 7.949434 ACTTGAATCAAAGAGAAGAAGCATTT 58.051 30.769 0.00 0.00 0.00 2.32
429 430 7.521871 ACTTGAATCAAAGAGAAGAAGCATT 57.478 32.000 0.00 0.00 0.00 3.56
430 431 8.804912 ATACTTGAATCAAAGAGAAGAAGCAT 57.195 30.769 0.00 0.00 0.00 3.79
431 432 9.896645 ATATACTTGAATCAAAGAGAAGAAGCA 57.103 29.630 0.00 0.00 0.00 3.91
495 496 9.773328 CACGAGTATTGTTGATGAAATTTATGT 57.227 29.630 0.00 0.00 0.00 2.29
496 497 9.986833 TCACGAGTATTGTTGATGAAATTTATG 57.013 29.630 0.00 0.00 0.00 1.90
499 500 9.912634 ATTTCACGAGTATTGTTGATGAAATTT 57.087 25.926 0.00 0.00 40.57 1.82
500 501 9.345517 CATTTCACGAGTATTGTTGATGAAATT 57.654 29.630 6.57 0.00 41.16 1.82
501 502 8.514594 ACATTTCACGAGTATTGTTGATGAAAT 58.485 29.630 0.00 0.00 42.86 2.17
502 503 7.870826 ACATTTCACGAGTATTGTTGATGAAA 58.129 30.769 0.00 0.00 38.52 2.69
503 504 7.433708 ACATTTCACGAGTATTGTTGATGAA 57.566 32.000 0.00 0.00 0.00 2.57
504 505 7.433708 AACATTTCACGAGTATTGTTGATGA 57.566 32.000 0.00 0.00 0.00 2.92
505 506 9.605955 TTAAACATTTCACGAGTATTGTTGATG 57.394 29.630 0.00 0.00 0.00 3.07
507 508 9.605955 CATTAAACATTTCACGAGTATTGTTGA 57.394 29.630 0.00 0.00 0.00 3.18
508 509 9.605955 TCATTAAACATTTCACGAGTATTGTTG 57.394 29.630 0.00 0.00 0.00 3.33
515 516 9.180678 GTTCAAATCATTAAACATTTCACGAGT 57.819 29.630 0.00 0.00 0.00 4.18
516 517 8.357966 CGTTCAAATCATTAAACATTTCACGAG 58.642 33.333 12.88 0.00 32.34 4.18
517 518 7.858382 ACGTTCAAATCATTAAACATTTCACGA 59.142 29.630 19.02 4.93 33.63 4.35
518 519 7.991736 ACGTTCAAATCATTAAACATTTCACG 58.008 30.769 14.76 14.76 34.61 4.35
533 534 8.368126 CAAAAATTCTGCTGATACGTTCAAATC 58.632 33.333 0.00 0.00 32.78 2.17
538 539 5.938322 TCCAAAAATTCTGCTGATACGTTC 58.062 37.500 0.00 0.00 0.00 3.95
541 542 8.184192 AGTTAATCCAAAAATTCTGCTGATACG 58.816 33.333 0.00 0.00 0.00 3.06
582 583 6.677781 TTTTGTAATCCATCGATCTTGGTC 57.322 37.500 0.00 3.28 35.64 4.02
633 651 6.649141 AGATTTTTAAAAAGATCGCAAACCCC 59.351 34.615 17.72 0.00 35.39 4.95
663 681 5.357314 TCGGATAAGATAATTCCCTAGCGAG 59.643 44.000 0.00 0.00 0.00 5.03
664 682 5.258841 TCGGATAAGATAATTCCCTAGCGA 58.741 41.667 0.00 0.00 0.00 4.93
666 684 7.612677 TCTTTCGGATAAGATAATTCCCTAGC 58.387 38.462 0.00 0.00 0.00 3.42
667 685 9.998106 TTTCTTTCGGATAAGATAATTCCCTAG 57.002 33.333 0.00 0.00 34.33 3.02
669 687 9.695155 TTTTTCTTTCGGATAAGATAATTCCCT 57.305 29.630 0.00 0.00 34.33 4.20
670 688 9.952188 CTTTTTCTTTCGGATAAGATAATTCCC 57.048 33.333 0.00 0.00 34.33 3.97
682 700 6.599638 CCTACCAAGATCTTTTTCTTTCGGAT 59.400 38.462 4.86 0.00 33.69 4.18
702 721 8.610035 CGATTTACTTTTTCCTGTATTCCTACC 58.390 37.037 0.00 0.00 0.00 3.18
729 748 1.305297 TCCCATGTCTCGCTGGACT 60.305 57.895 7.30 0.00 37.16 3.85
756 775 0.179119 GCATGGCCAGCACTTGAATC 60.179 55.000 13.05 0.00 0.00 2.52
921 942 1.555075 AGTGCAACCCGTACTGATGAT 59.445 47.619 0.00 0.00 39.36 2.45
922 943 0.973632 AGTGCAACCCGTACTGATGA 59.026 50.000 0.00 0.00 39.36 2.92
923 944 2.540515 CTAGTGCAACCCGTACTGATG 58.459 52.381 0.00 0.00 41.17 3.07
954 975 2.048419 TACTCCCTCGCTAGCCGCTA 62.048 60.000 9.66 0.00 36.73 4.26
959 980 1.801309 CTGCCTACTCCCTCGCTAGC 61.801 65.000 4.06 4.06 0.00 3.42
985 1006 1.597302 CCATGGATCAGCTCCTGCG 60.597 63.158 5.56 0.00 45.21 5.18
993 1014 2.242572 CGTGCTCGCCATGGATCAG 61.243 63.158 18.40 8.33 0.00 2.90
1137 1158 4.106925 CACCTGGGCTGCTCCTCC 62.107 72.222 0.00 0.00 34.39 4.30
1260 1281 2.483745 CGACCAAGCAGCAGCATG 59.516 61.111 3.17 0.72 45.49 4.06
1299 1320 2.587473 GCAGGAGAAGCTAGCGGC 60.587 66.667 9.55 5.37 42.19 6.53
1353 1374 6.734104 AAAAAGAAGAGCTACATAGTGCAG 57.266 37.500 0.00 0.00 0.00 4.41
1395 1424 5.978814 AGAGTTACTCGCATGGAAATTACT 58.021 37.500 6.73 0.00 35.36 2.24
1414 1443 3.181475 TGCGTTCTTGTCTTCTTGAGAGT 60.181 43.478 0.00 0.00 34.31 3.24
1434 1465 3.578688 CACCAGGCTGTAAAAGATTTGC 58.421 45.455 14.43 0.00 0.00 3.68
1463 1494 2.853003 GCTAAGCGAGAGTAAAACCGAG 59.147 50.000 0.00 0.00 0.00 4.63
2187 2239 8.557029 ACAAACTACTTTCCTGAAAATTACTCG 58.443 33.333 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.