Multiple sequence alignment - TraesCS2B01G399600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G399600 chr2B 100.000 3810 0 0 1 3810 567587201 567583392 0.000000e+00 7036.0
1 TraesCS2B01G399600 chr2B 95.930 172 7 0 3248 3419 23589261 23589090 2.900000e-71 279.0
2 TraesCS2B01G399600 chr2B 91.589 107 3 2 1277 1377 53410870 53410764 3.970000e-30 143.0
3 TraesCS2B01G399600 chr2D 92.545 1784 75 27 1407 3150 483076062 483074297 0.000000e+00 2505.0
4 TraesCS2B01G399600 chr2D 89.936 467 22 12 823 1279 483076636 483076185 2.550000e-161 579.0
5 TraesCS2B01G399600 chr2D 82.171 129 21 2 3682 3809 27519517 27519644 4.020000e-20 110.0
6 TraesCS2B01G399600 chr2A 91.712 1460 70 24 1719 3149 625570081 625568644 0.000000e+00 1978.0
7 TraesCS2B01G399600 chr2A 90.132 456 29 11 823 1267 625570825 625570375 2.550000e-161 579.0
8 TraesCS2B01G399600 chr2A 92.135 178 10 2 1564 1737 625570276 625570099 8.170000e-62 248.0
9 TraesCS2B01G399600 chr3B 99.256 806 5 1 1 805 806765288 806766093 0.000000e+00 1454.0
10 TraesCS2B01G399600 chr3B 96.471 170 6 0 3249 3418 246303847 246304016 8.060000e-72 281.0
11 TraesCS2B01G399600 chr3B 85.149 101 11 4 705 803 810310197 810310099 2.420000e-17 100.0
12 TraesCS2B01G399600 chr3B 83.654 104 13 4 705 806 55403495 55403596 1.130000e-15 95.3
13 TraesCS2B01G399600 chr4A 96.618 621 17 3 187 805 710746759 710746141 0.000000e+00 1027.0
14 TraesCS2B01G399600 chr4A 83.619 641 56 10 4 599 112842011 112841375 1.200000e-154 556.0
15 TraesCS2B01G399600 chr4A 95.745 94 4 0 55 148 710747084 710746991 6.590000e-33 152.0
16 TraesCS2B01G399600 chr4A 88.889 90 9 1 1 89 112842057 112841968 4.020000e-20 110.0
17 TraesCS2B01G399600 chr6B 85.277 849 77 14 1 805 646265575 646266419 0.000000e+00 832.0
18 TraesCS2B01G399600 chr6B 95.477 398 13 4 3415 3810 621213068 621212674 6.950000e-177 630.0
19 TraesCS2B01G399600 chr6B 95.954 173 7 0 3245 3417 238152657 238152485 8.060000e-72 281.0
20 TraesCS2B01G399600 chr6B 94.413 179 9 1 3252 3429 559700499 559700321 1.350000e-69 274.0
21 TraesCS2B01G399600 chr6B 88.618 123 6 3 1268 1382 699977438 699977560 3.970000e-30 143.0
22 TraesCS2B01G399600 chr6B 90.179 112 5 2 1277 1382 120647682 120647793 1.430000e-29 141.0
23 TraesCS2B01G399600 chr7D 86.421 788 66 12 57 805 10486604 10487389 0.000000e+00 824.0
24 TraesCS2B01G399600 chr7D 95.012 401 15 3 3415 3810 391231225 391230825 3.230000e-175 625.0
25 TraesCS2B01G399600 chr7D 86.525 141 19 0 3670 3810 219886541 219886401 5.100000e-34 156.0
26 TraesCS2B01G399600 chr7D 85.075 134 19 1 3657 3789 429493614 429493747 6.640000e-28 135.0
27 TraesCS2B01G399600 chr6D 86.168 788 67 10 57 805 277268495 277269279 0.000000e+00 813.0
28 TraesCS2B01G399600 chr6D 81.912 868 61 23 1 802 445064652 445065489 0.000000e+00 645.0
29 TraesCS2B01G399600 chr6D 89.286 112 6 2 1277 1382 15801271 15801160 6.640000e-28 135.0
30 TraesCS2B01G399600 chr4B 84.118 850 87 12 1 807 312083194 312084038 0.000000e+00 778.0
31 TraesCS2B01G399600 chr4B 90.179 112 5 2 1277 1382 25530227 25530338 1.430000e-29 141.0
32 TraesCS2B01G399600 chr4B 90.179 112 5 2 1277 1382 41528096 41528207 1.430000e-29 141.0
33 TraesCS2B01G399600 chr4B 90.179 112 5 2 1277 1382 63753841 63753952 1.430000e-29 141.0
34 TraesCS2B01G399600 chr3D 95.696 395 15 1 3418 3810 338007092 338006698 5.370000e-178 634.0
35 TraesCS2B01G399600 chr3D 95.238 105 4 1 3150 3253 338007198 338007094 8.470000e-37 165.0
36 TraesCS2B01G399600 chr7A 84.531 640 56 9 1 599 686028758 686029395 9.110000e-166 593.0
37 TraesCS2B01G399600 chr7A 83.699 638 61 8 3 599 619640486 619641121 2.570000e-156 562.0
38 TraesCS2B01G399600 chr7A 92.308 169 13 0 634 802 619641113 619641281 1.370000e-59 241.0
39 TraesCS2B01G399600 chr7A 83.333 156 23 3 3657 3810 232461119 232461273 1.430000e-29 141.0
40 TraesCS2B01G399600 chr4D 93.434 396 19 5 3415 3810 314419814 314420202 7.090000e-162 580.0
41 TraesCS2B01G399600 chr4D 91.071 112 4 2 1277 1382 230542550 230542661 3.070000e-31 147.0
42 TraesCS2B01G399600 chr5D 92.677 396 14 6 3415 3810 460459138 460458758 1.200000e-154 556.0
43 TraesCS2B01G399600 chr5B 97.041 169 5 0 3249 3417 622039201 622039369 6.230000e-73 285.0
44 TraesCS2B01G399600 chr5B 95.930 172 7 0 3252 3423 217679216 217679045 2.900000e-71 279.0
45 TraesCS2B01G399600 chr5B 95.906 171 7 0 3246 3416 273888404 273888234 1.040000e-70 278.0
46 TraesCS2B01G399600 chrUn 94.915 177 9 0 3252 3428 87206821 87206645 1.040000e-70 278.0
47 TraesCS2B01G399600 chrUn 88.618 123 6 3 1268 1382 15502645 15502767 3.970000e-30 143.0
48 TraesCS2B01G399600 chr7B 86.920 237 22 7 3236 3464 538750060 538750295 1.360000e-64 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G399600 chr2B 567583392 567587201 3809 True 7036.0 7036 100.000000 1 3810 1 chr2B.!!$R3 3809
1 TraesCS2B01G399600 chr2D 483074297 483076636 2339 True 1542.0 2505 91.240500 823 3150 2 chr2D.!!$R1 2327
2 TraesCS2B01G399600 chr2A 625568644 625570825 2181 True 935.0 1978 91.326333 823 3149 3 chr2A.!!$R1 2326
3 TraesCS2B01G399600 chr3B 806765288 806766093 805 False 1454.0 1454 99.256000 1 805 1 chr3B.!!$F3 804
4 TraesCS2B01G399600 chr4A 710746141 710747084 943 True 589.5 1027 96.181500 55 805 2 chr4A.!!$R2 750
5 TraesCS2B01G399600 chr4A 112841375 112842057 682 True 333.0 556 86.254000 1 599 2 chr4A.!!$R1 598
6 TraesCS2B01G399600 chr6B 646265575 646266419 844 False 832.0 832 85.277000 1 805 1 chr6B.!!$F2 804
7 TraesCS2B01G399600 chr7D 10486604 10487389 785 False 824.0 824 86.421000 57 805 1 chr7D.!!$F1 748
8 TraesCS2B01G399600 chr6D 277268495 277269279 784 False 813.0 813 86.168000 57 805 1 chr6D.!!$F1 748
9 TraesCS2B01G399600 chr6D 445064652 445065489 837 False 645.0 645 81.912000 1 802 1 chr6D.!!$F2 801
10 TraesCS2B01G399600 chr4B 312083194 312084038 844 False 778.0 778 84.118000 1 807 1 chr4B.!!$F4 806
11 TraesCS2B01G399600 chr3D 338006698 338007198 500 True 399.5 634 95.467000 3150 3810 2 chr3D.!!$R1 660
12 TraesCS2B01G399600 chr7A 686028758 686029395 637 False 593.0 593 84.531000 1 599 1 chr7A.!!$F2 598
13 TraesCS2B01G399600 chr7A 619640486 619641281 795 False 401.5 562 88.003500 3 802 2 chr7A.!!$F3 799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 1190 0.031314 TCTAGCAGTAGCAGCGCATC 59.969 55.0 11.47 0.0 45.49 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2845 3283 0.105224 TGACCTACCACCAACACGTG 59.895 55.0 15.48 15.48 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
286 540 1.554392 CGCATTTGGAGACTCTCTCG 58.446 55.000 6.02 0.00 44.28 4.04
545 823 4.083431 GCAACTGTAGTGTAGACGAGAGAA 60.083 45.833 4.40 0.00 0.00 2.87
807 1111 8.417884 CAAGGTTTATTTTAGACTTTTCCCACA 58.582 33.333 0.00 0.00 0.00 4.17
808 1112 8.541899 AGGTTTATTTTAGACTTTTCCCACAA 57.458 30.769 0.00 0.00 0.00 3.33
809 1113 8.638873 AGGTTTATTTTAGACTTTTCCCACAAG 58.361 33.333 0.00 0.00 0.00 3.16
810 1114 8.418662 GGTTTATTTTAGACTTTTCCCACAAGT 58.581 33.333 0.00 0.00 37.18 3.16
845 1149 2.920912 GGTCTCGTGTGGGTCCCA 60.921 66.667 6.47 6.47 0.00 4.37
886 1190 0.031314 TCTAGCAGTAGCAGCGCATC 59.969 55.000 11.47 0.00 45.49 3.91
887 1191 0.943359 CTAGCAGTAGCAGCGCATCC 60.943 60.000 11.47 0.00 45.49 3.51
977 1295 5.141182 GGTAGAGAGAGAGAGAGAGAGAGA 58.859 50.000 0.00 0.00 0.00 3.10
978 1296 5.242838 GGTAGAGAGAGAGAGAGAGAGAGAG 59.757 52.000 0.00 0.00 0.00 3.20
979 1297 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
991 1309 4.614475 AGAGAGAGAGAGAGAGTGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
992 1310 4.648762 AGAGAGAGAGAGAGAGTGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
993 1311 3.133721 AGAGAGAGAGAGAGTGAGAGAGC 59.866 52.174 0.00 0.00 0.00 4.09
994 1312 2.159043 AGAGAGAGAGAGTGAGAGAGCG 60.159 54.545 0.00 0.00 0.00 5.03
1024 1351 4.899239 CCATGGCGCTCCTCCGTC 62.899 72.222 7.64 0.00 0.00 4.79
1060 1387 2.438614 TCCTCCTCTGCTCGTCGG 60.439 66.667 0.00 0.00 0.00 4.79
1216 1543 0.821711 GTGCACACCCCAGTAAGCAA 60.822 55.000 13.17 0.00 36.90 3.91
1224 1551 0.321653 CCCAGTAAGCAAACGCTCCT 60.322 55.000 0.00 0.00 39.40 3.69
1231 1562 0.678048 AGCAAACGCTCCTCATTCCC 60.678 55.000 0.00 0.00 33.18 3.97
1291 1627 5.648330 AAAAAGTTACTCCCTCAGTTCCT 57.352 39.130 0.00 0.00 36.43 3.36
1292 1628 6.758806 AAAAAGTTACTCCCTCAGTTCCTA 57.241 37.500 0.00 0.00 36.43 2.94
1297 1633 8.625467 AAGTTACTCCCTCAGTTCCTAAATAT 57.375 34.615 0.00 0.00 36.43 1.28
1298 1634 9.725206 AAGTTACTCCCTCAGTTCCTAAATATA 57.275 33.333 0.00 0.00 36.43 0.86
1300 1636 9.984190 GTTACTCCCTCAGTTCCTAAATATAAG 57.016 37.037 0.00 0.00 36.43 1.73
1301 1637 9.725206 TTACTCCCTCAGTTCCTAAATATAAGT 57.275 33.333 0.00 0.00 36.43 2.24
1302 1638 8.252624 ACTCCCTCAGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 26.56 3.01
1303 1639 8.068733 ACTCCCTCAGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 26.56 3.24
1304 1640 8.855804 TCCCTCAGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
1305 1641 9.280456 TCCCTCAGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
1306 1642 9.331282 CCCTCAGTTCCTAAATATAAGTCTTTG 57.669 37.037 0.00 0.00 0.00 2.77
1319 1655 9.535878 AATATAAGTCTTTGGAGAGATTCGAAC 57.464 33.333 0.00 0.00 31.07 3.95
1321 1657 3.578716 AGTCTTTGGAGAGATTCGAACCA 59.421 43.478 0.00 0.00 31.07 3.67
1323 1659 3.323691 TCTTTGGAGAGATTCGAACCACA 59.676 43.478 0.00 0.00 0.00 4.17
1324 1660 3.981071 TTGGAGAGATTCGAACCACAT 57.019 42.857 0.00 0.00 0.00 3.21
1325 1661 5.186992 TCTTTGGAGAGATTCGAACCACATA 59.813 40.000 0.00 0.00 0.00 2.29
1326 1662 4.386867 TGGAGAGATTCGAACCACATAC 57.613 45.455 0.00 0.00 0.00 2.39
1327 1663 3.181490 TGGAGAGATTCGAACCACATACG 60.181 47.826 0.00 0.00 0.00 3.06
1328 1664 3.372954 GAGAGATTCGAACCACATACGG 58.627 50.000 0.00 0.00 0.00 4.02
1329 1665 3.021695 AGAGATTCGAACCACATACGGA 58.978 45.455 0.00 0.00 0.00 4.69
1331 1667 3.717707 AGATTCGAACCACATACGGATG 58.282 45.455 5.94 5.94 39.16 3.51
1334 1670 3.425577 TCGAACCACATACGGATGTAC 57.574 47.619 14.23 4.79 44.82 2.90
1335 1671 2.114056 CGAACCACATACGGATGTACG 58.886 52.381 14.23 12.80 44.82 3.67
1336 1672 2.478370 CGAACCACATACGGATGTACGT 60.478 50.000 14.23 9.89 44.82 3.57
1350 1686 8.158169 ACGGATGTACGTAGATGTATTTTAGA 57.842 34.615 10.33 0.00 46.58 2.10
1351 1687 8.288208 ACGGATGTACGTAGATGTATTTTAGAG 58.712 37.037 10.33 0.00 46.58 2.43
1352 1688 8.288208 CGGATGTACGTAGATGTATTTTAGAGT 58.712 37.037 10.33 0.00 0.00 3.24
1353 1689 9.395707 GGATGTACGTAGATGTATTTTAGAGTG 57.604 37.037 10.33 0.00 0.00 3.51
1354 1690 9.947669 GATGTACGTAGATGTATTTTAGAGTGT 57.052 33.333 10.33 0.00 0.00 3.55
1374 1710 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
1375 1711 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
1376 1712 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
1377 1713 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
1378 1714 6.414408 AGATTCACTCATTTTGCTTCGTAG 57.586 37.500 0.00 0.00 0.00 3.51
1379 1715 5.352569 AGATTCACTCATTTTGCTTCGTAGG 59.647 40.000 0.00 0.00 0.00 3.18
1386 1722 8.612619 CACTCATTTTGCTTCGTAGGTATATTT 58.387 33.333 0.00 0.00 0.00 1.40
1387 1723 9.826574 ACTCATTTTGCTTCGTAGGTATATTTA 57.173 29.630 0.00 0.00 0.00 1.40
1389 1725 9.268268 TCATTTTGCTTCGTAGGTATATTTAGG 57.732 33.333 0.00 0.00 0.00 2.69
1390 1726 9.268268 CATTTTGCTTCGTAGGTATATTTAGGA 57.732 33.333 0.00 0.00 0.00 2.94
1400 1736 5.662597 AGGTATATTTAGGAACGGAGGGAT 58.337 41.667 0.00 0.00 0.00 3.85
1401 1737 6.808357 AGGTATATTTAGGAACGGAGGGATA 58.192 40.000 0.00 0.00 0.00 2.59
1402 1738 7.428335 AGGTATATTTAGGAACGGAGGGATAT 58.572 38.462 0.00 0.00 0.00 1.63
1403 1739 8.572221 AGGTATATTTAGGAACGGAGGGATATA 58.428 37.037 0.00 0.00 0.00 0.86
1404 1740 8.637099 GGTATATTTAGGAACGGAGGGATATAC 58.363 40.741 0.00 0.00 33.85 1.47
1454 1816 2.813754 CAACATTGGGTAGTCAGTGGTG 59.186 50.000 0.00 0.00 36.13 4.17
1514 1876 5.916661 TTCAAGCTAGGTATCGAGTCTTT 57.083 39.130 0.00 0.00 0.00 2.52
1521 1883 4.985538 AGGTATCGAGTCTTTGGTAGTG 57.014 45.455 0.00 0.00 0.00 2.74
1672 2038 2.612672 GCGGCTGGGTAGATCTAAAAAC 59.387 50.000 3.40 0.00 0.00 2.43
1696 2062 3.681593 TGGTTTCATCCTAAAAGGTCCG 58.318 45.455 0.00 0.00 36.53 4.79
1725 2091 2.927553 GCACTAGGTTGCAAGAATGG 57.072 50.000 0.00 0.00 42.49 3.16
1753 2155 4.549458 CCACACAACCTAATCTGCTTTTG 58.451 43.478 0.00 0.00 0.00 2.44
1791 2194 1.398451 CGTGCAAGGCTAAAGTGTTCG 60.398 52.381 0.00 0.00 0.00 3.95
1795 2198 2.157863 GCAAGGCTAAAGTGTTCGACTC 59.842 50.000 0.00 0.00 31.73 3.36
1808 2211 1.099295 TCGACTCGCGGTCCATGTAT 61.099 55.000 18.07 0.00 41.64 2.29
1809 2212 0.248907 CGACTCGCGGTCCATGTATT 60.249 55.000 18.07 0.00 41.64 1.89
1810 2213 1.002142 CGACTCGCGGTCCATGTATTA 60.002 52.381 18.07 0.00 41.64 0.98
1811 2214 2.662700 GACTCGCGGTCCATGTATTAG 58.337 52.381 6.13 0.00 38.93 1.73
1833 2236 4.196971 GTCACCCTGACAAGTTTTACAGT 58.803 43.478 0.00 0.00 46.22 3.55
1835 2238 5.465724 GTCACCCTGACAAGTTTTACAGTAG 59.534 44.000 0.00 0.00 46.22 2.57
1904 2310 1.000955 CGTATAGCCTGGGTAGCAAGG 59.999 57.143 11.32 11.32 36.58 3.61
1960 2366 5.465724 GGTATAGAATTTCTGCAGTAACCCG 59.534 44.000 14.67 0.00 0.00 5.28
1961 2367 3.695830 AGAATTTCTGCAGTAACCCGA 57.304 42.857 14.67 0.00 0.00 5.14
1974 2380 1.652947 AACCCGAGGTGTTACTCCAT 58.347 50.000 6.23 0.00 35.34 3.41
1981 2387 4.040461 CCGAGGTGTTACTCCATAATCCAT 59.960 45.833 6.23 0.00 33.93 3.41
2002 2408 8.621532 TCCATATGGCAAGTTTATCTGAATAC 57.378 34.615 17.58 0.00 34.44 1.89
2047 2459 3.438087 TGAGCTTACTTCTGCTGAAATGC 59.562 43.478 7.48 7.45 39.91 3.56
2048 2460 3.415212 AGCTTACTTCTGCTGAAATGCA 58.585 40.909 7.48 0.00 41.05 3.96
2049 2461 3.822735 AGCTTACTTCTGCTGAAATGCAA 59.177 39.130 7.48 0.00 42.83 4.08
2050 2462 4.461781 AGCTTACTTCTGCTGAAATGCAAT 59.538 37.500 7.48 0.00 42.83 3.56
2051 2463 5.649395 AGCTTACTTCTGCTGAAATGCAATA 59.351 36.000 7.48 0.00 42.83 1.90
2052 2464 5.741040 GCTTACTTCTGCTGAAATGCAATAC 59.259 40.000 7.48 0.00 42.83 1.89
2053 2465 6.404074 GCTTACTTCTGCTGAAATGCAATACT 60.404 38.462 7.48 0.00 42.83 2.12
2054 2466 7.201644 GCTTACTTCTGCTGAAATGCAATACTA 60.202 37.037 7.48 0.00 42.83 1.82
2055 2467 6.674694 ACTTCTGCTGAAATGCAATACTAG 57.325 37.500 7.48 0.00 42.83 2.57
2260 2695 1.725641 TTCTCCGCTAAGTGTGCATG 58.274 50.000 0.00 0.00 0.00 4.06
2322 2758 9.540538 TTTTTGGTAGGGAAAGAAATATGATGA 57.459 29.630 0.00 0.00 0.00 2.92
2375 2812 6.045955 GCCTCTTCTGAATAGAATTTCGAGT 58.954 40.000 4.53 0.00 41.83 4.18
2407 2844 3.577415 ACCTGCTCCTTTTAACGAGTAGT 59.423 43.478 0.00 0.00 37.19 2.73
2477 2914 4.096532 CGACTAGCTTCATGTGGAACTCTA 59.903 45.833 0.00 0.00 38.04 2.43
2478 2915 5.221145 CGACTAGCTTCATGTGGAACTCTAT 60.221 44.000 0.00 0.00 38.04 1.98
2502 2939 4.021925 GTTCTGGAGCAGCGGGGT 62.022 66.667 0.00 0.00 0.00 4.95
2524 2961 1.139520 GCAATGGCCCAACATCGTC 59.860 57.895 0.00 0.00 0.00 4.20
2617 3054 2.187946 GAGGCCACCATGAGGACG 59.812 66.667 5.01 0.00 39.93 4.79
2623 3060 1.139734 CACCATGAGGACGGACGAG 59.860 63.158 0.00 0.00 38.69 4.18
2625 3062 1.753078 CCATGAGGACGGACGAGGA 60.753 63.158 0.00 0.00 36.89 3.71
2626 3063 1.433879 CATGAGGACGGACGAGGAC 59.566 63.158 0.00 0.00 0.00 3.85
2803 3240 2.029073 CAGGCCAACGAGTCGTGT 59.971 61.111 20.68 6.74 39.99 4.49
2845 3283 3.581024 TCAACAGAAATGCAGAATGGC 57.419 42.857 0.00 0.00 35.86 4.40
2853 3304 1.653667 TGCAGAATGGCACGTGTTG 59.346 52.632 18.38 7.54 39.25 3.33
2902 3353 1.830477 GAGGGAGATCTCAAGCAGTGT 59.170 52.381 23.85 0.00 34.13 3.55
2924 3375 1.212490 CATTCGCGGTTGGCATGTT 59.788 52.632 6.13 0.00 43.84 2.71
2926 3377 0.109319 ATTCGCGGTTGGCATGTTTC 60.109 50.000 6.13 0.00 43.84 2.78
2927 3378 1.169661 TTCGCGGTTGGCATGTTTCT 61.170 50.000 6.13 0.00 43.84 2.52
2928 3379 1.169661 TCGCGGTTGGCATGTTTCTT 61.170 50.000 6.13 0.00 43.84 2.52
2929 3380 1.003262 CGCGGTTGGCATGTTTCTTG 61.003 55.000 0.00 0.00 43.84 3.02
2930 3381 0.667184 GCGGTTGGCATGTTTCTTGG 60.667 55.000 0.00 0.00 42.87 3.61
2931 3382 0.958091 CGGTTGGCATGTTTCTTGGA 59.042 50.000 0.00 0.00 0.00 3.53
2937 3403 2.288961 GCATGTTTCTTGGATGCCTG 57.711 50.000 0.00 0.00 37.17 4.85
2942 3408 2.424842 TTTCTTGGATGCCTGCGGGT 62.425 55.000 14.55 0.00 34.45 5.28
3017 3487 2.873133 GCCTGTAGCTGTAGTAGTGG 57.127 55.000 0.00 0.00 38.99 4.00
3018 3488 2.376109 GCCTGTAGCTGTAGTAGTGGA 58.624 52.381 0.00 0.00 38.99 4.02
3024 3498 1.546476 AGCTGTAGTAGTGGAGTGTGC 59.454 52.381 0.00 0.00 0.00 4.57
3026 3500 1.893137 CTGTAGTAGTGGAGTGTGCCA 59.107 52.381 0.00 0.00 35.02 4.92
3175 3657 1.227674 GGAGCTGGAGGTAATGCCG 60.228 63.158 0.00 0.00 43.70 5.69
3201 3683 0.114168 TGCACCCCTTTAACATGGCT 59.886 50.000 0.00 0.00 0.00 4.75
3206 3688 4.081142 GCACCCCTTTAACATGGCTTAAAT 60.081 41.667 0.00 0.00 0.00 1.40
3254 3737 9.884814 ATAGAGGTGTATTCCATAACTTCTACT 57.115 33.333 0.00 0.00 35.06 2.57
3255 3738 8.240267 AGAGGTGTATTCCATAACTTCTACTC 57.760 38.462 0.00 0.00 28.32 2.59
3256 3739 7.288158 AGAGGTGTATTCCATAACTTCTACTCC 59.712 40.741 0.00 0.00 28.32 3.85
3257 3740 6.326843 AGGTGTATTCCATAACTTCTACTCCC 59.673 42.308 0.00 0.00 0.00 4.30
3258 3741 6.326843 GGTGTATTCCATAACTTCTACTCCCT 59.673 42.308 0.00 0.00 0.00 4.20
3259 3742 7.435305 GTGTATTCCATAACTTCTACTCCCTC 58.565 42.308 0.00 0.00 0.00 4.30
3260 3743 6.553852 TGTATTCCATAACTTCTACTCCCTCC 59.446 42.308 0.00 0.00 0.00 4.30
3261 3744 3.563223 TCCATAACTTCTACTCCCTCCG 58.437 50.000 0.00 0.00 0.00 4.63
3262 3745 3.053095 TCCATAACTTCTACTCCCTCCGT 60.053 47.826 0.00 0.00 0.00 4.69
3263 3746 3.705072 CCATAACTTCTACTCCCTCCGTT 59.295 47.826 0.00 0.00 0.00 4.44
3264 3747 4.202131 CCATAACTTCTACTCCCTCCGTTC 60.202 50.000 0.00 0.00 0.00 3.95
3265 3748 1.849977 ACTTCTACTCCCTCCGTTCC 58.150 55.000 0.00 0.00 0.00 3.62
3266 3749 1.112950 CTTCTACTCCCTCCGTTCCC 58.887 60.000 0.00 0.00 0.00 3.97
3267 3750 0.410663 TTCTACTCCCTCCGTTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
3268 3751 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
3269 3752 1.203212 TCTACTCCCTCCGTTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
3270 3753 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
3271 3754 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3272 3755 2.271777 ACTCCCTCCGTTCCCAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3273 3756 2.850568 ACTCCCTCCGTTCCCAAATAAT 59.149 45.455 0.00 0.00 0.00 1.28
3274 3757 3.268595 ACTCCCTCCGTTCCCAAATAATT 59.731 43.478 0.00 0.00 0.00 1.40
3275 3758 3.626930 TCCCTCCGTTCCCAAATAATTG 58.373 45.455 0.00 0.00 36.25 2.32
3276 3759 3.010808 TCCCTCCGTTCCCAAATAATTGT 59.989 43.478 0.00 0.00 34.60 2.71
3277 3760 3.380320 CCCTCCGTTCCCAAATAATTGTC 59.620 47.826 0.00 0.00 34.60 3.18
3278 3761 4.270008 CCTCCGTTCCCAAATAATTGTCT 58.730 43.478 0.00 0.00 34.60 3.41
3279 3762 4.705023 CCTCCGTTCCCAAATAATTGTCTT 59.295 41.667 0.00 0.00 34.60 3.01
3280 3763 5.185056 CCTCCGTTCCCAAATAATTGTCTTT 59.815 40.000 0.00 0.00 34.60 2.52
3281 3764 6.262193 TCCGTTCCCAAATAATTGTCTTTC 57.738 37.500 0.00 0.00 34.60 2.62
3282 3765 6.007703 TCCGTTCCCAAATAATTGTCTTTCT 58.992 36.000 0.00 0.00 34.60 2.52
3283 3766 7.169591 TCCGTTCCCAAATAATTGTCTTTCTA 58.830 34.615 0.00 0.00 34.60 2.10
3284 3767 7.335924 TCCGTTCCCAAATAATTGTCTTTCTAG 59.664 37.037 0.00 0.00 34.60 2.43
3285 3768 6.967199 CGTTCCCAAATAATTGTCTTTCTAGC 59.033 38.462 0.00 0.00 34.60 3.42
3286 3769 7.258441 GTTCCCAAATAATTGTCTTTCTAGCC 58.742 38.462 0.00 0.00 34.60 3.93
3287 3770 6.489603 TCCCAAATAATTGTCTTTCTAGCCA 58.510 36.000 0.00 0.00 34.60 4.75
3288 3771 7.125391 TCCCAAATAATTGTCTTTCTAGCCAT 58.875 34.615 0.00 0.00 34.60 4.40
3289 3772 7.285401 TCCCAAATAATTGTCTTTCTAGCCATC 59.715 37.037 0.00 0.00 34.60 3.51
3290 3773 7.286316 CCCAAATAATTGTCTTTCTAGCCATCT 59.714 37.037 0.00 0.00 34.60 2.90
3291 3774 8.348507 CCAAATAATTGTCTTTCTAGCCATCTC 58.651 37.037 0.00 0.00 34.60 2.75
3292 3775 8.896744 CAAATAATTGTCTTTCTAGCCATCTCA 58.103 33.333 0.00 0.00 0.00 3.27
3293 3776 9.466497 AAATAATTGTCTTTCTAGCCATCTCAA 57.534 29.630 0.00 0.00 0.00 3.02
3294 3777 9.466497 AATAATTGTCTTTCTAGCCATCTCAAA 57.534 29.630 0.00 0.00 0.00 2.69
3295 3778 7.951347 AATTGTCTTTCTAGCCATCTCAAAT 57.049 32.000 0.00 0.00 0.00 2.32
3296 3779 6.748333 TTGTCTTTCTAGCCATCTCAAATG 57.252 37.500 0.00 0.00 0.00 2.32
3297 3780 5.188434 TGTCTTTCTAGCCATCTCAAATGG 58.812 41.667 0.00 0.00 41.99 3.16
3298 3781 5.045651 TGTCTTTCTAGCCATCTCAAATGGA 60.046 40.000 8.23 0.00 41.64 3.41
3299 3782 5.295540 GTCTTTCTAGCCATCTCAAATGGAC 59.704 44.000 8.23 0.19 41.64 4.02
3300 3783 5.190528 TCTTTCTAGCCATCTCAAATGGACT 59.809 40.000 8.23 7.12 41.64 3.85
3301 3784 6.384015 TCTTTCTAGCCATCTCAAATGGACTA 59.616 38.462 8.23 7.79 41.64 2.59
3302 3785 5.537300 TCTAGCCATCTCAAATGGACTAC 57.463 43.478 8.23 0.00 41.64 2.73
3303 3786 4.962362 TCTAGCCATCTCAAATGGACTACA 59.038 41.667 8.23 0.00 41.64 2.74
3304 3787 4.574674 AGCCATCTCAAATGGACTACAA 57.425 40.909 8.23 0.00 41.64 2.41
3305 3788 4.265073 AGCCATCTCAAATGGACTACAAC 58.735 43.478 8.23 0.00 41.64 3.32
3306 3789 4.009675 GCCATCTCAAATGGACTACAACA 58.990 43.478 8.23 0.00 41.64 3.33
3307 3790 4.641989 GCCATCTCAAATGGACTACAACAT 59.358 41.667 8.23 0.00 41.64 2.71
3308 3791 5.822519 GCCATCTCAAATGGACTACAACATA 59.177 40.000 8.23 0.00 41.64 2.29
3309 3792 6.238484 GCCATCTCAAATGGACTACAACATAC 60.238 42.308 8.23 0.00 41.64 2.39
3310 3793 6.018751 CCATCTCAAATGGACTACAACATACG 60.019 42.308 0.00 0.00 41.64 3.06
3311 3794 5.416083 TCTCAAATGGACTACAACATACGG 58.584 41.667 0.00 0.00 0.00 4.02
3312 3795 5.186215 TCTCAAATGGACTACAACATACGGA 59.814 40.000 0.00 0.00 0.00 4.69
3313 3796 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
3314 3797 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
3316 3799 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
3317 3800 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
3333 3816 8.234136 ACGGATGTATGTAGACATTTCTTAGA 57.766 34.615 0.00 0.00 40.18 2.10
3334 3817 8.353684 ACGGATGTATGTAGACATTTCTTAGAG 58.646 37.037 0.00 0.00 40.18 2.43
3335 3818 8.353684 CGGATGTATGTAGACATTTCTTAGAGT 58.646 37.037 0.00 0.00 40.18 3.24
3336 3819 9.469807 GGATGTATGTAGACATTTCTTAGAGTG 57.530 37.037 0.00 0.00 40.18 3.51
3355 3838 5.171339 AGTGTAGATTCACTCATTTGCCT 57.829 39.130 0.00 0.00 44.07 4.75
3356 3839 5.564550 AGTGTAGATTCACTCATTTGCCTT 58.435 37.500 0.00 0.00 44.07 4.35
3357 3840 5.645497 AGTGTAGATTCACTCATTTGCCTTC 59.355 40.000 0.00 0.00 44.07 3.46
3358 3841 4.631377 TGTAGATTCACTCATTTGCCTTCG 59.369 41.667 0.00 0.00 0.00 3.79
3359 3842 3.679389 AGATTCACTCATTTGCCTTCGT 58.321 40.909 0.00 0.00 0.00 3.85
3360 3843 4.832248 AGATTCACTCATTTGCCTTCGTA 58.168 39.130 0.00 0.00 0.00 3.43
3361 3844 5.431765 AGATTCACTCATTTGCCTTCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3362 3845 4.944962 TTCACTCATTTGCCTTCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3363 3846 3.937814 TCACTCATTTGCCTTCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3364 3847 5.079689 TCACTCATTTGCCTTCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3365 3848 5.109210 TCACTCATTTGCCTTCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3366 3849 4.870426 CACTCATTTGCCTTCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3367 3850 5.005779 CACTCATTTGCCTTCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3368 3851 5.079689 TCATTTGCCTTCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3369 3852 4.868171 TCATTTGCCTTCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3370 3853 4.530710 TTTGCCTTCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3371 3854 4.530710 TTGCCTTCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3372 3855 3.845178 TGCCTTCGTATGTAGTCACTTG 58.155 45.455 0.00 0.00 0.00 3.16
3373 3856 3.257375 TGCCTTCGTATGTAGTCACTTGT 59.743 43.478 0.00 0.00 0.00 3.16
3374 3857 4.243270 GCCTTCGTATGTAGTCACTTGTT 58.757 43.478 0.00 0.00 0.00 2.83
3375 3858 4.091509 GCCTTCGTATGTAGTCACTTGTTG 59.908 45.833 0.00 0.00 0.00 3.33
3376 3859 5.466819 CCTTCGTATGTAGTCACTTGTTGA 58.533 41.667 0.00 0.00 0.00 3.18
3377 3860 5.924254 CCTTCGTATGTAGTCACTTGTTGAA 59.076 40.000 0.00 0.00 35.39 2.69
3378 3861 6.422701 CCTTCGTATGTAGTCACTTGTTGAAA 59.577 38.462 0.00 0.00 35.39 2.69
3379 3862 7.117812 CCTTCGTATGTAGTCACTTGTTGAAAT 59.882 37.037 0.00 0.00 35.39 2.17
3380 3863 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
3381 3864 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
3382 3865 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
3383 3866 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3384 3867 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3385 3868 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3386 3869 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3387 3870 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3388 3871 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3389 3872 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3390 3873 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3391 3874 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3392 3875 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3393 3876 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3394 3877 9.566432 ACTTGTTGAAATCTCTAGAAAGACAAT 57.434 29.630 0.00 0.00 0.00 2.71
3410 3893 8.947115 AGAAAGACAATTATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
3411 3894 7.625828 AAGACAATTATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
3412 3895 6.954232 AGACAATTATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
3413 3896 7.048512 AGACAATTATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
3414 3897 6.718294 ACAATTATTTAGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
3415 3898 7.854337 ACAATTATTTAGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
3416 3899 7.985752 ACAATTATTTAGAAACGGAGGGAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
3427 3910 6.837471 ACGGAGGGAGTAGAACATATTATC 57.163 41.667 0.00 0.00 0.00 1.75
3487 3972 4.460034 ACCGGTCAAAATGGTTACCATAAC 59.540 41.667 18.07 12.69 44.40 1.89
3779 4264 6.543465 TCAACTTCATTTTGCCTCGATCATAT 59.457 34.615 0.00 0.00 0.00 1.78
3806 4291 3.528905 TCTCCCATTCCCAATTCATGTCT 59.471 43.478 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 59 2.604686 TCGCCTCTTCCAGTGCCT 60.605 61.111 0.00 0.00 0.00 4.75
286 540 1.278238 CGTCGGCAGAATTGGACTAC 58.722 55.000 0.00 0.00 0.00 2.73
807 1111 8.688747 AGACCGCTGTACTAGTATATTTACTT 57.311 34.615 5.75 0.00 39.42 2.24
808 1112 7.117523 CGAGACCGCTGTACTAGTATATTTACT 59.882 40.741 5.75 1.35 41.57 2.24
809 1113 7.095439 ACGAGACCGCTGTACTAGTATATTTAC 60.095 40.741 5.75 0.00 39.95 2.01
810 1114 6.931281 ACGAGACCGCTGTACTAGTATATTTA 59.069 38.462 5.75 0.00 39.95 1.40
811 1115 5.762218 ACGAGACCGCTGTACTAGTATATTT 59.238 40.000 5.75 0.00 39.95 1.40
812 1116 5.178996 CACGAGACCGCTGTACTAGTATATT 59.821 44.000 5.75 0.00 39.95 1.28
813 1117 4.689812 CACGAGACCGCTGTACTAGTATAT 59.310 45.833 5.75 0.00 39.95 0.86
814 1118 4.053983 CACGAGACCGCTGTACTAGTATA 58.946 47.826 5.75 2.15 39.95 1.47
815 1119 2.871022 CACGAGACCGCTGTACTAGTAT 59.129 50.000 5.75 0.00 39.95 2.12
816 1120 2.274437 CACGAGACCGCTGTACTAGTA 58.726 52.381 0.00 0.00 39.95 1.82
817 1121 1.085091 CACGAGACCGCTGTACTAGT 58.915 55.000 0.00 0.00 39.95 2.57
818 1122 1.085091 ACACGAGACCGCTGTACTAG 58.915 55.000 0.00 0.00 39.95 2.57
819 1123 0.800631 CACACGAGACCGCTGTACTA 59.199 55.000 0.00 0.00 39.95 1.82
820 1124 1.579932 CACACGAGACCGCTGTACT 59.420 57.895 0.00 0.00 39.95 2.73
821 1125 1.443872 CCACACGAGACCGCTGTAC 60.444 63.158 0.00 0.00 39.95 2.90
977 1295 0.908910 TCCGCTCTCTCACTCTCTCT 59.091 55.000 0.00 0.00 0.00 3.10
978 1296 1.134521 TCTCCGCTCTCTCACTCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
979 1297 0.908910 TCTCCGCTCTCTCACTCTCT 59.091 55.000 0.00 0.00 0.00 3.10
991 1309 0.692419 ATGGAACCCATCTCTCCGCT 60.692 55.000 0.00 0.00 40.74 5.52
992 1310 0.533755 CATGGAACCCATCTCTCCGC 60.534 60.000 0.00 0.00 43.15 5.54
993 1311 0.107456 CCATGGAACCCATCTCTCCG 59.893 60.000 5.56 0.00 43.15 4.63
994 1312 0.179006 GCCATGGAACCCATCTCTCC 60.179 60.000 18.40 0.00 43.15 3.71
1024 1351 4.785453 GAGGACGCAGGCCAAGGG 62.785 72.222 5.01 8.26 0.00 3.95
1027 1354 4.373116 GACGAGGACGCAGGCCAA 62.373 66.667 5.01 0.00 43.96 4.52
1100 1427 2.770048 CCGCTTCCTCCCCCTCAT 60.770 66.667 0.00 0.00 0.00 2.90
1197 1524 0.821711 TTGCTTACTGGGGTGTGCAC 60.822 55.000 10.75 10.75 35.80 4.57
1216 1543 2.998949 GGGGGAATGAGGAGCGTT 59.001 61.111 0.00 0.00 0.00 4.84
1224 1551 1.295020 ATCCAAGAACGGGGGAATGA 58.705 50.000 0.00 0.00 33.73 2.57
1231 1562 1.202348 GAAGCCAAATCCAAGAACGGG 59.798 52.381 0.00 0.00 0.00 5.28
1273 1604 9.725206 TTATATTTAGGAACTGAGGGAGTAACT 57.275 33.333 0.00 0.00 41.52 2.24
1274 1605 9.984190 CTTATATTTAGGAACTGAGGGAGTAAC 57.016 37.037 0.00 0.00 41.52 2.50
1276 1607 9.364653 GACTTATATTTAGGAACTGAGGGAGTA 57.635 37.037 0.00 0.00 41.52 2.59
1297 1633 5.245301 TGGTTCGAATCTCTCCAAAGACTTA 59.755 40.000 10.29 0.00 0.00 2.24
1298 1634 4.040461 TGGTTCGAATCTCTCCAAAGACTT 59.960 41.667 10.29 0.00 0.00 3.01
1300 1636 3.680458 GTGGTTCGAATCTCTCCAAAGAC 59.320 47.826 10.29 0.00 0.00 3.01
1301 1637 3.323691 TGTGGTTCGAATCTCTCCAAAGA 59.676 43.478 10.29 0.00 0.00 2.52
1302 1638 3.664107 TGTGGTTCGAATCTCTCCAAAG 58.336 45.455 10.29 0.00 0.00 2.77
1303 1639 3.762407 TGTGGTTCGAATCTCTCCAAA 57.238 42.857 10.29 0.00 0.00 3.28
1304 1640 3.981071 ATGTGGTTCGAATCTCTCCAA 57.019 42.857 10.29 0.49 0.00 3.53
1305 1641 3.181490 CGTATGTGGTTCGAATCTCTCCA 60.181 47.826 10.29 5.12 0.00 3.86
1306 1642 3.372954 CGTATGTGGTTCGAATCTCTCC 58.627 50.000 10.29 2.22 0.00 3.71
1308 1644 3.021695 TCCGTATGTGGTTCGAATCTCT 58.978 45.455 10.29 0.00 0.00 3.10
1309 1645 3.431922 TCCGTATGTGGTTCGAATCTC 57.568 47.619 10.29 6.76 0.00 2.75
1310 1646 3.132289 ACATCCGTATGTGGTTCGAATCT 59.868 43.478 10.29 0.00 44.79 2.40
1311 1647 3.454375 ACATCCGTATGTGGTTCGAATC 58.546 45.455 0.00 0.00 44.79 2.52
1312 1648 3.536956 ACATCCGTATGTGGTTCGAAT 57.463 42.857 0.00 0.00 44.79 3.34
1313 1649 3.731565 CGTACATCCGTATGTGGTTCGAA 60.732 47.826 3.56 0.00 45.99 3.71
1314 1650 2.223317 CGTACATCCGTATGTGGTTCGA 60.223 50.000 3.56 0.00 45.99 3.71
1316 1652 3.155093 ACGTACATCCGTATGTGGTTC 57.845 47.619 3.56 0.00 45.99 3.62
1317 1653 3.947196 TCTACGTACATCCGTATGTGGTT 59.053 43.478 3.56 0.00 45.45 3.67
1318 1654 3.544684 TCTACGTACATCCGTATGTGGT 58.455 45.455 3.56 4.60 45.45 4.16
1319 1655 4.023450 ACATCTACGTACATCCGTATGTGG 60.023 45.833 3.56 5.16 45.45 4.17
1324 1660 9.271828 TCTAAAATACATCTACGTACATCCGTA 57.728 33.333 0.00 0.00 42.00 4.02
1325 1661 8.158169 TCTAAAATACATCTACGTACATCCGT 57.842 34.615 0.00 0.00 44.50 4.69
1326 1662 8.288208 ACTCTAAAATACATCTACGTACATCCG 58.712 37.037 0.00 0.00 0.00 4.18
1327 1663 9.395707 CACTCTAAAATACATCTACGTACATCC 57.604 37.037 0.00 0.00 0.00 3.51
1328 1664 9.947669 ACACTCTAAAATACATCTACGTACATC 57.052 33.333 0.00 0.00 0.00 3.06
1351 1687 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
1352 1688 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
1353 1689 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
1354 1690 6.535150 CCTACGAAGCAAAATGAGTGAATCTA 59.465 38.462 0.00 0.00 0.00 1.98
1355 1691 5.352569 CCTACGAAGCAAAATGAGTGAATCT 59.647 40.000 0.00 0.00 0.00 2.40
1356 1692 5.122396 ACCTACGAAGCAAAATGAGTGAATC 59.878 40.000 0.00 0.00 0.00 2.52
1357 1693 5.003804 ACCTACGAAGCAAAATGAGTGAAT 58.996 37.500 0.00 0.00 0.00 2.57
1358 1694 4.385825 ACCTACGAAGCAAAATGAGTGAA 58.614 39.130 0.00 0.00 0.00 3.18
1359 1695 4.002906 ACCTACGAAGCAAAATGAGTGA 57.997 40.909 0.00 0.00 0.00 3.41
1360 1696 7.715265 ATATACCTACGAAGCAAAATGAGTG 57.285 36.000 0.00 0.00 0.00 3.51
1361 1697 8.732746 AAATATACCTACGAAGCAAAATGAGT 57.267 30.769 0.00 0.00 0.00 3.41
1363 1699 9.268268 CCTAAATATACCTACGAAGCAAAATGA 57.732 33.333 0.00 0.00 0.00 2.57
1364 1700 9.268268 TCCTAAATATACCTACGAAGCAAAATG 57.732 33.333 0.00 0.00 0.00 2.32
1365 1701 9.841295 TTCCTAAATATACCTACGAAGCAAAAT 57.159 29.630 0.00 0.00 0.00 1.82
1366 1702 9.101655 GTTCCTAAATATACCTACGAAGCAAAA 57.898 33.333 0.00 0.00 0.00 2.44
1367 1703 7.436080 CGTTCCTAAATATACCTACGAAGCAAA 59.564 37.037 0.00 0.00 0.00 3.68
1368 1704 6.919662 CGTTCCTAAATATACCTACGAAGCAA 59.080 38.462 0.00 0.00 0.00 3.91
1369 1705 6.441274 CGTTCCTAAATATACCTACGAAGCA 58.559 40.000 0.00 0.00 0.00 3.91
1370 1706 5.860716 CCGTTCCTAAATATACCTACGAAGC 59.139 44.000 0.00 0.00 0.00 3.86
1371 1707 7.206981 TCCGTTCCTAAATATACCTACGAAG 57.793 40.000 0.00 0.00 0.00 3.79
1372 1708 6.207417 CCTCCGTTCCTAAATATACCTACGAA 59.793 42.308 0.00 0.00 0.00 3.85
1373 1709 5.707298 CCTCCGTTCCTAAATATACCTACGA 59.293 44.000 0.00 0.00 0.00 3.43
1374 1710 5.105997 CCCTCCGTTCCTAAATATACCTACG 60.106 48.000 0.00 0.00 0.00 3.51
1375 1711 6.012745 TCCCTCCGTTCCTAAATATACCTAC 58.987 44.000 0.00 0.00 0.00 3.18
1376 1712 6.218195 TCCCTCCGTTCCTAAATATACCTA 57.782 41.667 0.00 0.00 0.00 3.08
1377 1713 5.083953 TCCCTCCGTTCCTAAATATACCT 57.916 43.478 0.00 0.00 0.00 3.08
1378 1714 7.672122 ATATCCCTCCGTTCCTAAATATACC 57.328 40.000 0.00 0.00 0.00 2.73
1379 1715 9.418839 AGTATATCCCTCCGTTCCTAAATATAC 57.581 37.037 0.00 0.00 34.10 1.47
1386 1722 5.848286 TGTAGTATATCCCTCCGTTCCTA 57.152 43.478 0.00 0.00 0.00 2.94
1387 1723 4.736611 TGTAGTATATCCCTCCGTTCCT 57.263 45.455 0.00 0.00 0.00 3.36
1389 1725 6.837471 AAGATGTAGTATATCCCTCCGTTC 57.163 41.667 3.46 0.00 0.00 3.95
1390 1726 6.553852 ACAAAGATGTAGTATATCCCTCCGTT 59.446 38.462 3.46 0.00 38.24 4.44
1426 1785 5.221843 ACTGACTACCCAATGTTGCTAGAAA 60.222 40.000 0.00 0.00 0.00 2.52
1454 1816 3.080319 ACGGTAGAGTTACTGAGTGGTC 58.920 50.000 0.00 0.00 38.24 4.02
1521 1883 4.040376 CGGAATTTCTGCGTAGTAGTACC 58.960 47.826 0.00 0.20 42.21 3.34
1672 2038 4.082949 GGACCTTTTAGGATGAAACCAACG 60.083 45.833 0.00 0.00 37.67 4.10
1696 2062 0.107654 AACCTAGTGCAGATTCCGCC 60.108 55.000 0.00 0.00 0.00 6.13
1753 2155 2.410730 CACGTACGACAAGGGATTTCAC 59.589 50.000 24.41 0.00 0.00 3.18
1791 2194 2.034305 ACTAATACATGGACCGCGAGTC 59.966 50.000 8.23 13.63 45.51 3.36
1795 2198 2.124903 GTGACTAATACATGGACCGCG 58.875 52.381 0.00 0.00 0.00 6.46
1833 2236 7.844779 ACCCTGGATTTTAGTGAGAAGATACTA 59.155 37.037 0.00 0.00 0.00 1.82
1835 2238 6.890293 ACCCTGGATTTTAGTGAGAAGATAC 58.110 40.000 0.00 0.00 0.00 2.24
1974 2380 9.812347 ATTCAGATAAACTTGCCATATGGATTA 57.188 29.630 26.47 14.44 37.39 1.75
1981 2387 7.040478 GCCATGTATTCAGATAAACTTGCCATA 60.040 37.037 0.00 0.00 0.00 2.74
2015 2421 7.279536 CAGCAGAAGTAAGCTCAATATTCAGAA 59.720 37.037 0.00 0.00 39.50 3.02
2016 2422 6.760298 CAGCAGAAGTAAGCTCAATATTCAGA 59.240 38.462 0.00 0.00 39.50 3.27
2047 2459 7.747799 CAGTTTGTTGATTCAGTGCTAGTATTG 59.252 37.037 0.00 0.00 0.00 1.90
2048 2460 7.445402 ACAGTTTGTTGATTCAGTGCTAGTATT 59.555 33.333 0.00 0.00 0.00 1.89
2049 2461 6.936900 ACAGTTTGTTGATTCAGTGCTAGTAT 59.063 34.615 0.00 0.00 0.00 2.12
2050 2462 6.288294 ACAGTTTGTTGATTCAGTGCTAGTA 58.712 36.000 0.00 0.00 0.00 1.82
2051 2463 5.126067 ACAGTTTGTTGATTCAGTGCTAGT 58.874 37.500 0.00 0.00 0.00 2.57
2052 2464 5.468072 AGACAGTTTGTTGATTCAGTGCTAG 59.532 40.000 0.00 0.00 0.00 3.42
2053 2465 5.368145 AGACAGTTTGTTGATTCAGTGCTA 58.632 37.500 0.00 0.00 0.00 3.49
2054 2466 4.202441 AGACAGTTTGTTGATTCAGTGCT 58.798 39.130 0.00 0.00 0.00 4.40
2055 2467 4.558538 AGACAGTTTGTTGATTCAGTGC 57.441 40.909 0.00 0.00 0.00 4.40
2322 2758 7.066887 TCCACATGTTATGCGATGATTTTAAGT 59.933 33.333 0.00 0.00 0.00 2.24
2375 2812 3.857157 AAGGAGCAGGTTAACACTGAA 57.143 42.857 21.28 0.00 38.20 3.02
2477 2914 1.476471 GCTGCTCCAGAACCTGCATAT 60.476 52.381 0.00 0.00 34.79 1.78
2478 2915 0.107508 GCTGCTCCAGAACCTGCATA 60.108 55.000 0.00 0.00 34.79 3.14
2626 3063 4.697756 TTCACGAAGGGGCTGCCG 62.698 66.667 13.40 2.93 0.00 5.69
2803 3240 5.606329 TGATACATACCATGGGATTCAGACA 59.394 40.000 18.09 6.60 33.60 3.41
2845 3283 0.105224 TGACCTACCACCAACACGTG 59.895 55.000 15.48 15.48 0.00 4.49
2902 3353 3.059386 GCCAACCGCGAATGGGAA 61.059 61.111 25.04 0.00 37.19 3.97
2937 3403 1.067821 TCACCATTTCAAACAACCCGC 59.932 47.619 0.00 0.00 0.00 6.13
2942 3408 5.184864 AGTCACACTTCACCATTTCAAACAA 59.815 36.000 0.00 0.00 0.00 2.83
2975 3441 1.638133 GCACATTGCACAAACACACA 58.362 45.000 0.00 0.00 44.26 3.72
3167 3649 1.823470 TGCATCAGGGCGGCATTAC 60.823 57.895 12.47 0.00 36.28 1.89
3175 3657 0.324275 TTAAAGGGGTGCATCAGGGC 60.324 55.000 0.00 0.00 0.00 5.19
3201 3683 7.921214 TCAATACACCGTTGCTTGAAAATTTAA 59.079 29.630 0.00 0.00 29.28 1.52
3206 3688 4.902443 TCAATACACCGTTGCTTGAAAA 57.098 36.364 0.00 0.00 29.28 2.29
3218 3701 7.506114 TGGAATACACCTCTATTCAATACACC 58.494 38.462 0.00 0.00 35.57 4.16
3253 3736 3.577805 ATTATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
3254 3737 3.010808 ACAATTATTTGGGAACGGAGGGA 59.989 43.478 2.66 0.00 37.15 4.20
3255 3738 3.361786 ACAATTATTTGGGAACGGAGGG 58.638 45.455 2.66 0.00 37.15 4.30
3256 3739 4.270008 AGACAATTATTTGGGAACGGAGG 58.730 43.478 2.66 0.00 37.15 4.30
3257 3740 5.897377 AAGACAATTATTTGGGAACGGAG 57.103 39.130 2.66 0.00 37.15 4.63
3258 3741 6.007703 AGAAAGACAATTATTTGGGAACGGA 58.992 36.000 2.66 0.00 37.15 4.69
3259 3742 6.267496 AGAAAGACAATTATTTGGGAACGG 57.733 37.500 2.66 0.00 37.15 4.44
3260 3743 6.967199 GCTAGAAAGACAATTATTTGGGAACG 59.033 38.462 0.00 0.00 37.15 3.95
3261 3744 7.093945 TGGCTAGAAAGACAATTATTTGGGAAC 60.094 37.037 0.00 0.00 38.01 3.62
3262 3745 6.951198 TGGCTAGAAAGACAATTATTTGGGAA 59.049 34.615 0.00 0.00 38.01 3.97
3263 3746 6.489603 TGGCTAGAAAGACAATTATTTGGGA 58.510 36.000 0.00 0.00 38.01 4.37
3264 3747 6.773976 TGGCTAGAAAGACAATTATTTGGG 57.226 37.500 0.00 0.00 38.01 4.12
3265 3748 8.230472 AGATGGCTAGAAAGACAATTATTTGG 57.770 34.615 0.00 0.00 46.32 3.28
3266 3749 8.896744 TGAGATGGCTAGAAAGACAATTATTTG 58.103 33.333 0.00 0.00 46.32 2.32
3267 3750 9.466497 TTGAGATGGCTAGAAAGACAATTATTT 57.534 29.630 0.00 0.00 46.32 1.40
3268 3751 9.466497 TTTGAGATGGCTAGAAAGACAATTATT 57.534 29.630 0.00 0.00 46.32 1.40
3269 3752 9.638176 ATTTGAGATGGCTAGAAAGACAATTAT 57.362 29.630 0.00 0.00 46.32 1.28
3270 3753 8.896744 CATTTGAGATGGCTAGAAAGACAATTA 58.103 33.333 0.00 0.00 46.32 1.40
3271 3754 7.147949 CCATTTGAGATGGCTAGAAAGACAATT 60.148 37.037 0.00 0.00 46.32 2.32
3272 3755 6.320672 CCATTTGAGATGGCTAGAAAGACAAT 59.679 38.462 0.00 0.00 46.32 2.71
3273 3756 5.649395 CCATTTGAGATGGCTAGAAAGACAA 59.351 40.000 0.00 0.00 46.32 3.18
3275 3758 5.295540 GTCCATTTGAGATGGCTAGAAAGAC 59.704 44.000 0.00 0.00 39.01 3.01
3276 3759 5.190528 AGTCCATTTGAGATGGCTAGAAAGA 59.809 40.000 0.00 0.00 39.01 2.52
3277 3760 5.435291 AGTCCATTTGAGATGGCTAGAAAG 58.565 41.667 0.00 0.00 39.01 2.62
3278 3761 5.441718 AGTCCATTTGAGATGGCTAGAAA 57.558 39.130 0.00 0.00 39.01 2.52
3279 3762 5.425217 TGTAGTCCATTTGAGATGGCTAGAA 59.575 40.000 0.00 0.00 39.01 2.10
3280 3763 4.962362 TGTAGTCCATTTGAGATGGCTAGA 59.038 41.667 0.00 0.00 39.01 2.43
3281 3764 5.282055 TGTAGTCCATTTGAGATGGCTAG 57.718 43.478 0.00 0.00 39.01 3.42
3282 3765 5.045942 TGTTGTAGTCCATTTGAGATGGCTA 60.046 40.000 0.00 0.33 39.01 3.93
3283 3766 4.263462 TGTTGTAGTCCATTTGAGATGGCT 60.263 41.667 0.00 1.24 39.01 4.75
3284 3767 4.009675 TGTTGTAGTCCATTTGAGATGGC 58.990 43.478 0.00 0.00 39.01 4.40
3285 3768 6.018751 CGTATGTTGTAGTCCATTTGAGATGG 60.019 42.308 0.00 0.00 40.48 3.51
3286 3769 6.018751 CCGTATGTTGTAGTCCATTTGAGATG 60.019 42.308 0.00 0.00 0.00 2.90
3287 3770 6.049149 CCGTATGTTGTAGTCCATTTGAGAT 58.951 40.000 0.00 0.00 0.00 2.75
3288 3771 5.186215 TCCGTATGTTGTAGTCCATTTGAGA 59.814 40.000 0.00 0.00 0.00 3.27
3289 3772 5.416083 TCCGTATGTTGTAGTCCATTTGAG 58.584 41.667 0.00 0.00 0.00 3.02
3290 3773 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
3291 3774 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
3292 3775 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
3293 3776 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
3294 3777 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
3295 3778 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
3305 3788 8.818141 AAGAAATGTCTACATACATCCGTATG 57.182 34.615 10.32 10.32 45.58 2.39
3307 3790 9.346005 TCTAAGAAATGTCTACATACATCCGTA 57.654 33.333 0.00 0.00 39.16 4.02
3308 3791 8.234136 TCTAAGAAATGTCTACATACATCCGT 57.766 34.615 0.00 0.00 39.16 4.69
3309 3792 8.353684 ACTCTAAGAAATGTCTACATACATCCG 58.646 37.037 0.00 0.00 39.16 4.18
3310 3793 9.469807 CACTCTAAGAAATGTCTACATACATCC 57.530 37.037 0.00 0.00 39.16 3.51
3320 3803 9.030452 AGTGAATCTACACTCTAAGAAATGTCT 57.970 33.333 0.00 0.00 46.36 3.41
3334 3817 5.446473 CGAAGGCAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3335 3818 4.631377 CGAAGGCAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3336 3819 4.631813 ACGAAGGCAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3337 3820 4.832248 ACGAAGGCAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3338 3821 3.679389 ACGAAGGCAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3339 3822 5.065218 ACATACGAAGGCAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3340 3823 4.943705 ACATACGAAGGCAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3341 3824 4.323417 ACATACGAAGGCAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3342 3825 3.937814 ACATACGAAGGCAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3343 3826 4.870426 ACTACATACGAAGGCAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3344 3827 5.086104 ACTACATACGAAGGCAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3345 3828 5.005779 GTGACTACATACGAAGGCAAATGAG 59.994 44.000 0.00 0.00 30.99 2.90
3346 3829 4.868171 GTGACTACATACGAAGGCAAATGA 59.132 41.667 0.00 0.00 30.99 2.57
3347 3830 4.870426 AGTGACTACATACGAAGGCAAATG 59.130 41.667 0.00 0.00 30.99 2.32
3348 3831 5.086104 AGTGACTACATACGAAGGCAAAT 57.914 39.130 0.00 0.00 30.99 2.32
3349 3832 4.530710 AGTGACTACATACGAAGGCAAA 57.469 40.909 0.00 0.00 30.99 3.68
3350 3833 4.242475 CAAGTGACTACATACGAAGGCAA 58.758 43.478 0.00 0.00 30.99 4.52
3351 3834 3.257375 ACAAGTGACTACATACGAAGGCA 59.743 43.478 0.00 0.00 0.00 4.75
3352 3835 3.846360 ACAAGTGACTACATACGAAGGC 58.154 45.455 0.00 0.00 0.00 4.35
3353 3836 5.466819 TCAACAAGTGACTACATACGAAGG 58.533 41.667 0.00 0.00 0.00 3.46
3354 3837 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
3355 3838 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
3356 3839 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
3357 3840 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3358 3841 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3360 3843 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3361 3844 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3362 3845 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3363 3846 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3364 3847 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3365 3848 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3366 3849 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3367 3850 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3368 3851 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3384 3867 8.947115 CCTCCGTTTCTAAATAATTGTCTTTCT 58.053 33.333 0.00 0.00 0.00 2.52
3385 3868 8.182227 CCCTCCGTTTCTAAATAATTGTCTTTC 58.818 37.037 0.00 0.00 0.00 2.62
3386 3869 7.886446 TCCCTCCGTTTCTAAATAATTGTCTTT 59.114 33.333 0.00 0.00 0.00 2.52
3387 3870 7.399634 TCCCTCCGTTTCTAAATAATTGTCTT 58.600 34.615 0.00 0.00 0.00 3.01
3388 3871 6.954232 TCCCTCCGTTTCTAAATAATTGTCT 58.046 36.000 0.00 0.00 0.00 3.41
3389 3872 6.822170 ACTCCCTCCGTTTCTAAATAATTGTC 59.178 38.462 0.00 0.00 0.00 3.18
3390 3873 6.718294 ACTCCCTCCGTTTCTAAATAATTGT 58.282 36.000 0.00 0.00 0.00 2.71
3391 3874 8.202137 TCTACTCCCTCCGTTTCTAAATAATTG 58.798 37.037 0.00 0.00 0.00 2.32
3392 3875 8.315220 TCTACTCCCTCCGTTTCTAAATAATT 57.685 34.615 0.00 0.00 0.00 1.40
3393 3876 7.909485 TCTACTCCCTCCGTTTCTAAATAAT 57.091 36.000 0.00 0.00 0.00 1.28
3394 3877 7.178983 TGTTCTACTCCCTCCGTTTCTAAATAA 59.821 37.037 0.00 0.00 0.00 1.40
3395 3878 6.664816 TGTTCTACTCCCTCCGTTTCTAAATA 59.335 38.462 0.00 0.00 0.00 1.40
3396 3879 5.482878 TGTTCTACTCCCTCCGTTTCTAAAT 59.517 40.000 0.00 0.00 0.00 1.40
3397 3880 4.834496 TGTTCTACTCCCTCCGTTTCTAAA 59.166 41.667 0.00 0.00 0.00 1.85
3398 3881 4.410099 TGTTCTACTCCCTCCGTTTCTAA 58.590 43.478 0.00 0.00 0.00 2.10
3399 3882 4.038271 TGTTCTACTCCCTCCGTTTCTA 57.962 45.455 0.00 0.00 0.00 2.10
3400 3883 2.885616 TGTTCTACTCCCTCCGTTTCT 58.114 47.619 0.00 0.00 0.00 2.52
3401 3884 3.889520 ATGTTCTACTCCCTCCGTTTC 57.110 47.619 0.00 0.00 0.00 2.78
3402 3885 5.952347 AATATGTTCTACTCCCTCCGTTT 57.048 39.130 0.00 0.00 0.00 3.60
3403 3886 6.781014 TGATAATATGTTCTACTCCCTCCGTT 59.219 38.462 0.00 0.00 0.00 4.44
3404 3887 6.312529 TGATAATATGTTCTACTCCCTCCGT 58.687 40.000 0.00 0.00 0.00 4.69
3405 3888 6.659668 TCTGATAATATGTTCTACTCCCTCCG 59.340 42.308 0.00 0.00 0.00 4.63
3406 3889 7.451877 TGTCTGATAATATGTTCTACTCCCTCC 59.548 40.741 0.00 0.00 0.00 4.30
3407 3890 8.410673 TGTCTGATAATATGTTCTACTCCCTC 57.589 38.462 0.00 0.00 0.00 4.30
3408 3891 8.964533 ATGTCTGATAATATGTTCTACTCCCT 57.035 34.615 0.00 0.00 0.00 4.20
3459 3942 4.460034 GGTAACCATTTTGACCGGTACATT 59.540 41.667 7.34 0.61 31.12 2.71
3460 3943 4.011698 GGTAACCATTTTGACCGGTACAT 58.988 43.478 7.34 0.00 31.12 2.29
3515 4000 6.590234 ATTTGGAAACCCAAGACATACTTC 57.410 37.500 0.00 0.00 43.90 3.01
3660 4145 7.977853 GCCAAGAGACATCAATTTCACATATTT 59.022 33.333 0.00 0.00 0.00 1.40
3667 4152 4.456911 GTCAGCCAAGAGACATCAATTTCA 59.543 41.667 0.00 0.00 34.93 2.69
3744 4229 9.023962 AGGCAAAATGAAGTTGATAGAACATTA 57.976 29.630 0.00 0.00 0.00 1.90
3764 4249 5.702670 GGAGATTCAATATGATCGAGGCAAA 59.297 40.000 0.00 0.00 0.00 3.68
3779 4264 4.945411 TGAATTGGGAATGGGAGATTCAA 58.055 39.130 0.00 0.00 32.43 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.