>input_sequence_43117
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----------------------------------------------ATGGGTTCCATGGCGCTCCTCCGTCCCTTGGCCT
GCGTCCTCGTCCTCCTCTGCTCGTCGGTCGGGGCAGCGAATGGGATGTATCGTAGAGCTGGCGGCGATGAGGGGGAGGAA
GCGGGCGGCAGGGTCACCGGCGGCGCCCGCGGCGGCGTCAGGAGCGCGTGGCCGGGGTACCTCTACACCAGAGCCGTCGG
GCGGTGCACACCCCAGTAAGCAAACGCTCCTCATTC----CCCCGTTCTTGGATTTGGCTTCCCCTTGCAGAAGTAAAAA
AAAAGTT-----ACTCCCTCAGTTCCTAAATATAAGTCTTTGGAGAGATTCGAACCACATACGGATGTACGTAGATGTAT
TTTAGAGTGTAGATTCACTCATTTTGCTTCGTAGGTATATTTAGGAACGGAGGGATATACT-------------------
----ACATCTTTGTTTTCTTGATTTTTC---TAGCAACATTGGGTAGTCAGTGGTGACCACTCAGTAACTCTACCGTGCT
AATTCAGCACCTATTCAAGCTAGGTATCGAGTCTTTGGTAGTGGTACTACTACGCAGAAATTCCGGAGATTGCAATGCGA
CTGCGACGAACAGTAGCATCTGTGTG----CTGGGAGAGGAGTCCCAATAATGTAATTTTGAGGCTTACAGCCTGCCTCA
AAAGTGGCCACTTTTAGCGGCTGGGTAGATCTAAAAACGTTGGTTTCATCCTAAAAGGTCCGGCGGAATCTGCACTAGGT
TGCAAGAATGGTGTGCCCACAC------------------------------------AACCTAATCTGCTTTTGTGAAA
TCCCTTGTCGTACGTGCAA-GGCTAAAGTGTTCGACTCGCGGTCCATGTATTAGTCACCCTGACAAGTTTTACAGTAGTA
TCTTCTCACTAAAATCCAGGGTACATTTTGAGTCACTA---GTTGTAACCGTATAGCCTGGGTAGCAAGGAAAACTTGCC
AACAAGCGACTATTGTGTAGTGGTATAGAATTTCTGCAGTAACCCGAGGTGTTACTCCATAATCCATATGGCAAGTTTAT
CTGAATACATGGCAGTTTTTTTCTG------AATATTGAGCTTACTTCTGCTGAAATGCAATACTAGCAC----------
-------TGAATCAACAAACTGTCTTAACTGCCCTGGTTCCAGTCTTGTGAACATCAAGAGTTCAAGACAAGTCACGTCC
GTTTCATTCATTGCGTTCATGCAATTCTGTTTCGTCCTCCCCACGCTCTCTCTGGTTTGTTCAAGTCGTGCTCATGTGGG
TCAATGTGGCCTTTGTGCCCTGTGGGGCATTCTC----CGCTA--AGTGTGCATGCTATCGTAGCTTACGAGCCAACTTA
TTAGG-CCCCTTTTTTGGTAGGGAAAGAAATATGATGACTTAAAATCATCGCATAACATGTGGAATGCCT-CTTCTGAAT
AGAATTTCGAGTTCAGTGTTAACCTGCTCCTTTTAACGAGTAGTTTTCTGAGTAATAACACTGCAATAAACCGTTACCTT
GCTCCTTTTACGACTAGCTTCATGTGGAACTCTATATGCAGGTTCTGGAGCAGCGGGGTTGAGCAATGGCCCAACATCGT
CCCCCAGGAGGCGGCGGTGTCCAAGGTGTTCGGGTCCAGGTCCATGGACAAGTACGGGCCGCGGCTCACCCTGCTGGAGG
CCACCATGAGGACGGACGAGGACGGCAGCCCCTTCGTGAAGCTGGTGAAGCACGGGAGCGCGGCGCTCATCAACGCCTAC
ACGCGGACGGGCTTCCCCTTCGACTCCTGGGAGGTGAAGGCGCTGCTGCTGGAGGCGCTCGTCTCCGAGGACGCCGCGGC
CGCCCAGGCCGAGCGGTTCCAGCAGGCCAACGAGTCGTGTGTCTGA----------------------------------
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>chr2B_1_TraesCS2B01G399600
GGTGCGGCGGCAT-----------------------------------------GGCGAGGCACTGGAAGAGGCGAGGGG
AGAAGGCACGACGGCGGCGGGGCGCTGTAAGAGGCGAGGAAGAAGGCGCGACACGAGGGAAAGACGGGCGGCGGGCGCCT
GCGCGCAGCTTTTAACCAGCGCACTAGGCGACACGTGTCAAAACTGCCG------------CTTTTGCC-C-C-CCCCCC
CC------------------------------------------------------------------------------
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--------------------ATCTTTTTCACGCTCAAACTTTCGCGCGTCTGCTGGAGCGCGCC----------------
---AAATTGGCGGTTTATCCGGCGCGCCGAATATTTCGCGCGCATTTGGAGACTCTCTCGTAGTCCAATTCTGCCGACGG
CTTGACGCTCAATCAATTTCGACCATCCTCAACTGAAGCGTCTTGCTACCATAAACTTTCGCCGCTAGC--------CAT
CTTCAC--------GGGAATTCCTACCACAATATTAGGTTCCTGGTAATTCGTGCTTCCTTTTGATTTTCCCAGCATCCT
CAATTGCTACTCCAGTGAGTGGAGGGTCCGGTCTGGATGTTCGCATCTGTGTGCGCCCCCAAAAAGATGATGCAACTGTA
GTGTAGA--------CGAGAGAAAGAATGACTAGCTACAGATA-TTTTT-AGGCAAATGACTATTGACTAGAGATGTAGT
AT--TATATAACAAGTGGGCCAGTGTGGTCAGCGAGAGTAGTAAGTGATCCTAGCCTGGATCA-----------------
-----GATGTTTTCCTGTTGCGCCAAACAAAAATTGGGTCGGAATTAACCGGGATCAATAAAATCAGGGTGTTGATTTTA
GGGATTAGGAGTACAAGGTTTGATTCAGACTTGACATACAAATTCAAGGTTTATTTTAGACTTTTCCCACAAGTAAATAT
ACTAGTACAGCGGTCTCGTGTGGGTCCCATTGCACGCCCCTCCCGAGGAGTCTAGCAGTAGCAGCGCATCC---------
-GAGCGTCGTGCTTTCAAAATTGGGCTCCATTTATTCCAAAGCCTGCAGCAAGCAG----ACAGAGGGAGTGGTAGAGAG
AGAGAGAGAGAGAGAGAGAGAGTGAGAGAGCG---------GAGAGATGGGTTCCATGGCGCTCCTCCGTCCCTTGGCCT
GCGTCCTCGTCCTCCTCTGCTCGTCGGTCGGGGCAGCGAATGGGATGTATCGTAGAGCTGGCGGCGATGAGGGGGAGGAA
GCGGGCGGCAGGGTCACCGGCGGCGCCCGCGGCGGCGTCAGGAGCGCGTGGCCGGGGTACCTCTACACCAGAGCCGTCGG
GCGGTGCACACCCCAGTAAGCAAACGCTCCTCATTC----CCCCGTTCTTGGATTTGGCTTCCCCTTGCAGAAGTAAAAA
AAAAGTT-----ACTCCCTCAGTTCCTAAATATAAGTCTTTGGAGAGATTCGAACCACATACGGATGTACGTAGATGTAT
TTTAGAGTGTAGATTCACTCATTTTGCTTCGTAGGTATATTTAGGAACGGAGGGATATACT-------------------
----ACATCTTTGTTTTCTTGATTTTTC---TAGCAACATTGGGTAGTCAGTGGTGACCACTCAGTAACTCTACCGTGCT
AATTCAGCACCTATTCAAGCTAGGTATCGAGTCTTTGGTAGTGGTACTACTACGCAGAAATTCCGGAGATTGCAATGCGA
CTGCGACGAACAGTAGCATCTGTGTG----CTGGGAGAGGAGTCCCAATAATGTAATTTTGAGGCTTACAGCCTGCCTCA
AAAGTGGCCACTTTTAGCGGCTGGGTAGATCTAAAAACGTTGGTTTCATCCTAAAAGGTCCGGCGGAATCTGCACTAGGT
TGCAAGAATGGTGTGCCCACAC------------------------------------AACCTAATCTGCTTTTGTGAAA
TCCCTTGTCGTACGTGCAA-GGCTAAAGTGTTCGACTCGCGGTCCATGTATTAGTCACCCTGACAAGTTTTACAGTAGTA
TCTTCTCACTAAAATCCAGGGTACATTTTGAGTCACTA---GTTGTAACCGTATAGCCTGGGTAGCAAGGAAAACTTGCC
AACAAGCGACTATTGTGTAGTGGTATAGAATTTCTGCAGTAACCCGAGGTGTTACTCCATAATCCATATGGCAAGTTTAT
CTGAATACATGGCAGTTTTTTTCTG------AATATTGAGCTTACTTCTGCTGAAATGCAATACTAGCAC----------
-------TGAATCAACAAACTGTCTTAACTGCCCTGGTTCCAGTCTTGTGAACATCAAGAGTTCAAGACAAGTCACGTCC
GTTTCATTCATTGCGTTCATGCAATTCTGTTTCGTCCTCCCCACGCTCTCTCTGGTTTGTTCAAGTCGTGCTCATGTGGG
TCAATGTGGCCTTTGTGCCCTGTGGGGCATTCTC----CGCTA--AGTGTGCATGCTATCGTAGCTTACGAGCCAACTTA
TTAGG-CCCCTTTTTTGGTAGGGAAAGAAATATGATGACTTAAAATCATCGCATAACATGTGGAATGCCT-CTTCTGAAT
AGAATTTCGAGTTCAGTGTTAACCTGCTCCTTTTAACGAGTAGTTTTCTGAGTAATAACACTGCAATAAACCGTTACCTT
GCTCCTTTTACGACTAGCTTCATGTGGAACTCTATATGCAGGTTCTGGAGCAGCGGGGTTGAGCAATGGCCCAACATCGT
CCCCCAGGAGGCGGCGGTGTCCAAGGTGTTCGGGTCCAGGTCCATGGACAAGTACGGGCCGCGGCTCACCCTGCTGGAGG
CCACCATGAGGACGGACGAGGACGGCAGCCCCTTCGTGAAGCTGGTGAAGCACGGGAGCGCGGCGCTCATCAACGCCTAC
ACGCGGACGGGCTTCCCCTTCGACTCCTGGGAGGTGAAGGCGCTGCTGCTGGAGGCGCTCGTCTCCGAGGACGCCGCGGC
CGCCCAGGCCGAGCGGTTCCAGCAGGCCAACGAGTCGTGTGTCTGAATCCCATGGTATGTATCAA-CAGAAATGCAGAAT
GGCA-------------CGTGTTGGTGGTAGGTCACCGCTTCTGTGACTTGGGAGGGAGATCTCAAGCAGTGTTCCCATT
CGCGGTTGGCATGTTTCTTGGAT---------------GCCTGCGGGTTGTTTGAAATGGTGAAGTGTGACTTGCACTCG
TGTGTGTTTGTGC----AATGTGCGTAGCCTGTAGCTGTAGTAGTGGA----GTGTGCCATCGTGCAAGACTGCGATC--
--TGGTTGGATGGATGGAGCGTTTT---ATGTCGCCGTGTCGTGTTTCTATGCTGCTAATGACTTTTTT-ACAAGGATTG
TCTTTCGTTTGTGATTGCCTCAGCGTGCAGTCAGGGGCGGAGCTGGAGGTAATGCCGCCCTGATGCACCCCTTTAACATG
GCTTAAATTTT-CAAGCAACGGTGTATTGAATAGAGGTGTATTCCATAACTTCTACTCCCTCCGTTCCCAAATAATTGTC
TTTCTAGCCATCTCAAATGGACTACAACATACGGATGTATGTAGACATTTCTTAGAGTGTAGATTCACTCATTTGCCTTC
GTATGTAGTCACTTGTTGAAATCTCTAGAAAGACAATTATTTAGAAACGGAGGGAGTAGAACATATTATCAGACATAATA
AAAGGTGATGTATATAAAAAAAAT--GTACCGGTCAAAATGGTTACCATAACGATGAATCAAAGAACAAAATTACTTGAG
AAGTATGTCTTGGGTTTCCAAATTCGAAAATATATCATCAGACATCAAGGTTTCTTACCCTACAAGATAAAAAGGTAGAA
TTAAACTTTCAAGTAAAACATAATAAAATGAACGAAAGTACTTAAGAGACTTTCTAAAAAAACTAAATATGTGAAATTGA
TGTCTCTTGGCTGACAATGTCTATTAACCAAGTACTTTCTTCTTACCAGATCTTTCAAATTAGAATGATAATGTTCTATC
AACTTCATTTTGCCTCGATCATATTGAATCTCCCATTCCCAATTCATGTCTTCT
>chr3B_1
GGTGCGGTGGCAT-----------------------------------------GGCGGGGCACTGGAAGAGGCGAGGGG
AGAAGGCACGACGGCGGCGGGGCGCTGTAAGAGGCGAGGAAGAAGGCGCGACACGAGGGAAAGACGGGCGGCGGGCGCCT
GCGCGCAGCTTTTAACCAGCGCACTAGGCGACACGTGTCAAAACTGCCG------------CTTTTGCC-C-CCCCCCCC
CC------------------------------------------------------------------------------
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--------------------ATCTTTTTCACGCTCAAACTTTCGCGCGTCTGCTGGAGCGCGCC----------------
---AAATTGGCGGTTTATCCGGCGCGCCGAATATTTCGCGCGCATTTGGAGACTCTCTCTTAGTCCAATTCTGCCGACGG
CTTGACGCTCAATCAATTTCGACCATCCTCAACTGAAGCGTCTTGCTACCATAAACTTTCGCCGCTAGC--------CAT
CTTCAC--------GGGAATTCCTACCACAATATTAGGTTCCTGGTAATTCGTGCTTCCTTTTGATTTTCCCAGCATCCT
CAATTGCTACTCCAGTGAGTGGAGGGTCCGGTCTGGATGTTCGCATCTGTGTGCGCCCCCAAAAAGATGATGCAACTGTA
GTGTAGA--------CGAGAGAGAGAATGACTAGCTACAGATA-TTTTT-AGGCAAATGACTATTGACTAAAGATGTAGT
AT--TATATAACAAGTGGGCCAGTGTGGTCAGCGAGAGTAGTAAGTGATCCTAGCCTGGATCA-----------------
-----GATGTTTTCCTGTTGCGCCAAACAAAAATTGGGTCGGAATTAACCGGGATCAATAAAATCAGGGTGTTGATTTTA
GGGATTAGGAGTACAAGGTTTGATTCAGACTTGACATACAAATTCAAGGTTTATTTTAGACTTTTCCC------------
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>chr4A_1
GGTGCAGCGGTATGGCAGGGCACTGGAAGAGGCGAGGGGAGAAGGCGCGGCGGCGGCGGGGCACTGGAAGAGGCGAGGGG
AGAAGGCGCGGCGGCGGCGGGGCACTGGAAGAGGCGAGGAAGAAGGCACGACAGGAGGGAAAGAGTAGCGGCGGGCGCTT
GCGCGCGGCTTTTAACCAGCGCGCTGGTTGACGCGTGCCAAAACTGTTGCACGCGCTGCCGCTTTTTCC-C-CGCACGCA
-C------------------------------------------------------------------------------
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--------------------ATCTTTTTCACGCTCAAACTTTCCCGTGTCTGCTGGAGCACGCCGCGCAGCCTCTCGCGC
GCCAAATTGTTGGTTTATCCAGCGTGTCGAATATTTCGCGCGCATTTGGAGATG--CTCTTAGTCTAATTCTGCTGACGG
CTTGACGCTCAATCAATTTCGACCATCCTCAACTGAAGCGTCTCGCTACCATAAACTTTCGCCGCCAGC--------CAT
CTTCACATCTTCACCGGAATTCCTACCACAACATTAGGTTCCTGGTAATTCGTGATTCCTTTTGATTTTGCCAGCATCCA
CTATTGCTACTCCAGTGAGTGGAGGGTCCAGTCTGGATGTTCGCCTCCGCGCGCGCCCCTAGGTAGATGATGCAACTATA
GTGTAGATGAGAG--AGAGAGAGAGAATGACTAGCGACAGATA-TTTTT-AGGTAAATGACTATTGACTAGAGACGTA--
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>chr6B_1
GGTGCGGCGGCAT-----------------------------------------GGCGGGGCACTGGAAGAGGCGAGGGG
AGAAGGCGCAGCGGCGGCGGGGCGCTGGAAGAAGCGAGGAGGAAGGCGCGACAGGAGGGAAAGAGTGGCGATGGGCGCCT
GCGCGCGGCTTTTAACTAGCGCGTTGGGCGACGCGTACCAAAACTGCTCCGCGCGCTGCCGCTTTTCCTACGCGAACGCA
-C------------------------------------------------------------------------------
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--------------------ATCTTTTTCACGCTCAAACTTTTGCGCGTCTGCTGGAGCGCGCCGCACGGCCTCTAGCTC
GCCAAATTGGCGGTTTATCCAGCGC--CGATTATTTCGCGCCCATTTGGAGGTG--CTCTTAATCCAATTCTGCTGAGGG
CTTGACCCTCAATCAATTTCGACCATCCTCAATTGAAGTGTCTCGCTACCATAAACTTTGGCCGCGAGC--------CAT
CTTCACATCTTCATCGGAATTCCTACCGCAACATTAGGTTCCTGGTAATTCGTGATTCCTTTTGATTTTCCCAGCATCCT
CAATTGCTACTCCAGTGAGTGGAGGGTCCGGTCTGGATGTTCGCCTCCGCGCACGTCCCCAGGAAGATGATGCAACTGTA
GTGTAGATG------CGAGAGAGAAAATGACTAGCGACAGATA-TTTTTTAGGCAAATGACCATTGACCAGAGAAGTAGT
AT--TATATAACAAGTGGGCCAGTGTGGTCAGCGAGAGTAGTAAGTGATCTTGGCCGGGATCA-----------------
-----GATGTTTTACTATTGCGCCAAACAAAAATAAGGTCAGAATTAACCGGGATCAATAAGATCAAGGTGCTGATTTCA
GGGATTAAGAGTTCAAGGTTTGATTCAGATTTGGCATACAAATTCAATGTTAATTTTAGACTTTTCCC------------
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>chr6D_1
GGTGCGGCGGCAT-----------------------------------------TGCGGGGCACTGGAAGAGGCGAGGGG
AGAAGGCGCAGCGGCGGCGGGGCGCTGGAAGAGGCGAGGAAGAAAGCGCGACAGGAGGGAATGAGTGGCGGCGGGCGCCT
GCGCGCGGCTTTTAACCAGCGCGCTAGGCGACGCGTGCCAAAACAGCTGCGCGCGCTGCCCGCTTTTCC-C-ACTGCGCA
-C------------------------------------------------------------------------------
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--------------------ATCTTTTTCACGCTAAAACTTTCGCGCGTCTGCTGGAGCGCGCCGCGCGGTCTCTCACAC
GTCAAATTGACGGTTTATCCAGCGCGC---------CGCGCGCATCTGGAGATG--CTCTTAGTCCAATTCTGCAGACGG
CTTGACGCTCAATCAATTTCGACCATCCTCAACTGAAGCGTCTCGCTACCTTAAAGTTTCGCCGCCAGC--------TAT
CTTCACATCTTCACCGGAATTCCTACCACAACATTAGGTTCCTGGTAATCCATGATTCCTTTTGATTTTCCCAGCATCCT
CAATTGCTACTCC----------------GGTCTGGATGTTCGCCTCCGCGCGCGCCCCCAGGAAGATGATGCAACTGTA
GTGTAGAC----GTGAGAGAGAGAGAGTGACTAGCGACAGATA-TTTTT-AGGCAAATGACTATTGACTAGAGACATAGT
AT--TATATAACAAGTGGGC-AGTGTGGTTAGCGAGAGTAGTAAGTGATCCCGGCCGGGATCGGATGTTTTCCTGGCCGG
GATCGGATGTTTTCCTGTTGCGCCAAACAAAAATAGGGTCGGAATTC-CCGGGATCAATAAGATCAGGGTGCTGATTTCA
GGGCTTAAGAATACAAGGTTTGATTCAAACTTGGCGTACAAATTCAAGGCTTATTTTAGACTTTT---------------
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>chr4B_1
GGTGCGACGGCAT-----------------------------------------GGCAGGGCACTGGAAGAGGCGAGGGG
AGAAGGCGCAGCGGTGGCGGGGCGCTGGAAGAGGCGAGGAAGAAGGCGCGACAGGAAGGCAAGAGTGGCGGCGGGCGCCT
GCGCGTGGCTTTTAACTAGCGTGTTGGGCGACGCGTGCCAAAATTGCTCCGCG--CTGCCGCTTTTTCC-CGCGCACGCA
-C------------------------------------------------------------------------------
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--------------------ATCTTTTTCACGCTCAAACTTTCGCATGTCTGCTGGAGCGCGCCGCGCGGCCTCTCGCGT
GCCAAATTGGCGGTTTATCCAGCGC--CGGTTATTTCGCGCATATTTGGAGATA--CTCTTAGTCCAATTCTGCTGATGG
CTTGATGCTTAAGCAATTTTGACCATCCTCAACTGAAGCGTCTCAGTACCATAAACTTTCGCCGCGAGC--------CAT
CTTCACAGCTTCATCGGAATTCCTACCACAACATTA-GTTCCTGGTAATTCATGATTCCTTTTGATTTTCCCAGCATCCT
CTATTGCTACTCCAGTGAGTGGAGGGTCCAGTCTGGATGTTCGCCTCCGCTCGCGTCCCTAAGAAAATGATGCAACTGTA
GTGTAGAT----G--CGAGAGGGAGAATGACTAGGGACAGATATTTTTT-AGGCAAATGACTACTGACTAGAGACGTAGT
ATATTATATAACAAGTGGGACTGTGTGGTCAGCGAGAGTAGTAAATGATCCCGGCCGGGATCA-----------------
-----GATATTTTCTTATTGCGCCAAACAAAAATATGGTCGGAATTAACCGGGATCAATAAGATCAGGGTGCCGATTTCA
AGGATTAAGAGTACAATGTTTGATTCAGACTTGGCGTACAAACTCAAGGTTTATTTTAGACTTTTCCCAC----------
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>chr7A_1
GGTGCAGCGGCAT-----------------------------------------GGCAGGGCACTGGAAGAGGCGAGGGG
AGAAGGCGCGGCGGCGGCGGGGCACTGGAAGAGGCGAGGAAGAAGGCACGACAGGAGGGAAAGAGTAGCGGCGGGCGCTT
GCGCACGGCTTTTAACCAGCGCGCTGGTTGACGCGTGCCAAAACGGTTGCACGCGCTGCCGCTTTTTCC-C-CGCACGCA
-C------------------------------------------------------------------------------
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--------------------ATCTTTTTCACGCTCAAACTTTCCCGTGTCTGCTGGAGCGCGCCGCGCAGCCTCTCGCGC
GCCAAATTGTTGGTTTATCCAGCGTGTCGAATATTTCGCGCGCATTTGGAGATG--CTCTTAGTCTAATTCTGCTGACGG
CTTGACGCTCAATCAATTTCGACCATCCTCAACTGAAGCGTCTCGCTACCATAAACTTTCGCCGCCAGC--------CAT
CTTCACATCTTCACCGGAATTCCTACCACAACATTAGGTTCCTGGTAATTCGTGATTCCTTTTGATTTTCCCAGCATCCA
CTATTGCTACTCCAGTGAGTGGAGGGTCCGGTCTGGATGTTCGCCTCCACGCGCGCCCCTAGGTAGATGATGCAACTGTA
GTGTAGAT----G--AGAGAGAGAGAATGACTAGCGACAGATA-TTTTT-AGGCAAATGACTATTGACTAGAGACGTA--
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>chr7A_3
--TGCAGCGGCAT-----------------------------------------GGCAGGGCACTGGAAGAGGCGAGGGG
AGAAGGCGCGGCGGCGGCGGGGCACTGGAAGAGGCGAGGAAGAAGGCACGACAGGAGGGAAAGAGTAGCGGCGGGCGCTT
GCGTGCGGCTTTTAACCAGCGTGTTGGTTGACGCGTGCCAAAACTGTTGCACGCGCTGCCGCTTTTTCC-C-CGCACACA
-C------------------------------------------------------------------------------
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--------------------ATCTTTTTCACGCTCAAACTTTCCCGTGTCTGCTGGAGCGCGCCGCGCAGCCTCTCGCGC
GCCAAATTGTTGGTTTATCCAGCGTGTCGAATATTTAGCGCGCATTTGGAGATG--CTCTTAGTCTAATTCTGCTGACGG
CTTGACGCTCAATCAATTTCGACCATCCTCAACTGAAGCGTCTCGCTACCATAAACTTTCGCCGCCAGC--------CAT
CTTCACATCTTCACCGGAATTCCTACCACAACATTAGGTTCCTGGTAATTCGTGATTCGTTTTGATTTTCCCAGCATCCA
CTATTGCTACTCCAGTGAGTGGAGGGTCCGGTCTGGATGTTCGCCTCCGCGCGCGCCCCTAGGTAGATGATGCAACTGTA
GTGTAGAT----G--AGAGAGCGAGAATGACTAGCGAGAGATA-TTTTT-AGGCAAATGACTATTGACTAGAGACGTA--
-------------------------------------------AGTGATCCCGGCCAGGATCA-----------------
-----GATGTTTTCCTGTTGTGCCAAACAAAAATAGGGTCGGAATTAACCGGGATCAATAAGATGAGGGTGCTGATTTTA
GGGATTAAGAGTACAAGGTTTGATTCAGACTTGGCGTACAAATTCAAGGTTTATTTTAGACTTTT---------------
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>chr4A_55
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---------------GGCGGGGCACTAGAAGAGGCGAGGAAGAAGGCGCGACAGGAGGGAAAGACGGGCGGCGGGCGCCT
GCGCGCAGCTTTTAACCAGCGCACTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATCTTTTTCACGCTCAAACTTTCGCGCGTCTGCTGGAGCGC-------------------
GCCAAATTGGCGGTTTATCCGGCGCGTCCAATATTTCGCGCGCATTTGGAGACT--CTCTTAGTCCAATTCTGCCGACGG
CTTGACGCTCAATCAATTTCGACCATCCTCAACTGAAGCGTCTCGCTACCATAAACTTTCGCCGCTAGC--------CAT
CTTCAC--------CGGAATTCCTACCACAATATTAGGTTCCTGGTAATTCGTGCTTCCTTTTGATTTTCCCAGCATCCT
CAATTGCTACTCCAGTGAGTGGAGGGTCCGGTCTGGATGTTCGCATCTGCGTGCCCCCCCAGGAAGATGATGCAACTGTA
GTGTAGAC----G--AGAGAGAGAGAATGACTAGCTACAGATA-TTTTT-GGGCAAATGACTATTGACCAGAGACGTAGT
AT--TATATAACAAGTGGGCCAGTGTGGTCAGCGAGAGTAGTAAGTGATCCTGACCTGGATTA-----------------
-----GATGTTTTCCTGTTGCGCCAAACAAAAATTGGGTCGGAATTAACCGGGATCAATAAAATCAGGGTGTTGATTTCA
GGAATTAAGAGTACAAGGTTTGATTCAGACTTGACATACAAATTCAAGGTTTATTTTAGACTTTTCCC------------
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>chr7D_57
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-----------------CGGGGCGCTGGAGGAGGCAAGGAAGAAGGCGCGACAGGAGGGAAAGAGTAGCGGTGGGCGCCT
GCACGCGGCTTTTAACCAGCGCACTGGGCGACGCGTGCCAAAACTGCCGTGCGCGCTGCCGCTTTTTCC-C-CGCGCGCA
-C------------------------------------------------------------------------------
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--------------------ATCTGTTTCACGCTCAAACTTTCACGTATCTGCTGGAGCGCGCCGCGCGGCCTCTCTCGC
GCCAAATTGGCGGTTTATCCAGCGCGCCGAATATTTCGCGTGCATTTGAAGATG--CTCTTAGTCTAATTCTGTTGACGG
CTTGACGCTCAATTAATTTCGACCATGCTCAACTGAAGCGTCTCGCTACCATAAACTTTCGCCGCCGGCCATTTGCACAT
CTTCAC--------CAGAATTTCTACCACAACATTAGGTTCCTGGTAATTCGTGATTCCTTTTGATTTTCCCAGCATCCT
CAATTGCTACTCCAGTGAGTGGAGGGTGCGGTCTGGATGTTTGCCTCCGCGCGCGCCCTGAGGAAGATGATGCAACTGTA
GTGTAGAT--------GAGAGAGAGAATGACTAGCGACAGATA-TTTTT-AGGCAAATGACTATTGACTAGAGATGTAGT
AT--TATATAACAAGTGGGCCAGTGTGGTCAGCGAGAGTAGTAAGTGATCCCGGCCGGGATCA-----------------
-----GATCTTTTCCTGTTGCGCCAAACAAAAATAGGGTCGGAATTAATCGGGATCAATAAGATCAGAGTGCTGATTTTA
GGGATTAAAAGTACAAGGTTTGATTCAGATTTGGCGTACAAATTCAAGGTTTATTTTAGACTTTCCCC------------
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>chr6D_57
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-----------------CGGGGCGCTGGAGGAGGCAAGGAAGAAGGCGCGACAGGAGGGAAAGAGTGGCGGTGGGCGCCT
GCGCGCGGCTTTTAACCAGCACACTGGGCGACGCGTGCCAAAACTGCCGTGCGCGCTGTCGCTTTTTCC-C-CGCGCGCA
-C------------------------------------------------------------------------------
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--------------------GTCTTTTTCACGCTCAAACTTTCACGTGTCTGCTGGAGCGCGCCGCGCGGCCTCTCGCGC
GCCAAATTGGCGGTTTATCTAGCGCGCCGAATATTTCGCGCGCATTTGAAGATG--CTCTTAGTCTAATTCTGTTGACGG
CTTGACGCTCAATTAATTTCGACCATGCTCAACTGAAGCGTCTCGCTACCATAAACTTTCACCGCCGGCCATTTGCACAT
CTTCAC--------CGGAATTTCTACCACAACATTAGGTTCCTGGTAATTCGTGAGTCCTTTTGATTTTTCCAGCATCCT
CAATTGCTACTCCAGTGAGTGGAGGGTGCGGTCTGGATGTTTGCCTCCGCGCGCGCCCTGAGGAAGATGATGCAACTGTA
GTGTAGAT--------GAGAGAGAGAATGACTAGCGACAGATA-TTTTT-AAGCAAATGACTATTGACTAGAGATGTAGT
AT--TATATAACAAGTGGGCCAGTGTGGTCA-CGAGAGTAGTAAGTGATCCCGGCCGGGATCA-----------------
-----GATCTTTTCCTGTTGCGCCAAACAAAAATAGGGTCGGAATTAATCGGGATCAATAAGATCAGAGTGCTGATTTTA
GGGATTAAAAGTACAAGGTTTGATTCAGCCTTGGCGTACAAATTCAAGGTTTATTTTAGACTTTCCCC------------
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>chr2D_823
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-----TACAGCGGTCTCGTGTGGGTCCCCTTGCACGCCCCTCCCGAGGAGTCTAGCAGTAGCAGCGCATTGCAACGCATC
GGAGCGTCGTGCTTTCAAAATTGGGCTCCATTTATTCCAAAGCCTGCAGCAAGCAGACAAACAGAGGGAGTGGTAGAGAG
AGAGAGAGAGAGAGC-------------------------AGAGAGATGGGTTCCATGGCGCTCCTCCGTTCCCTGGCCT
GCGTCCTCGTCCTCCTCTGCTCGTCGCTCGGGGAAGCGAACGGGATGTATCGTAGAGCCGGCGGCGCGGAGGGGGAGGAA
GCGGGAAGCAGGGTCGCCGGCGGCGCCCGCGGCGGCGTCAGGAGCGCGTGGCCGGGGTACCTCTACACCAGAGCCGTCGG
GCGATGCACGCCCCAGTAAGCACACGCTCCCCATTC----C-CCGTTCTTGGATTTGGCTTCCCCTCGCAGAAGTAAAAA
AAGTTACGACGCACTCCCTCCGTGCCATAATAATATAAGAGCGTTTTTGACACTACGCTGGTATGTATAAAAAACGCTCT
-----------------------------------TATATTATGTGACGGAGGGAGTACATCTTTGTTTTCTTTTTTTTA
GGGGACATCTTTGTTTTCTTGATTCCTC---TAGCAACATTGGGTAGTCAGTGGTCACCACTCAGTCACTCTACCGTGCT
AATTCAGCACCTATTCAAGCTAGGTATCGAGTCTTGGGTAGTAGTACTACTACGCAGAAATTCCGGAGATTGCAATGCGA
CTGCGACGAACACTAGCATCTGTGTG----CTGGGGGAGGAGTCCGAATAATGTAATTTTGAGGCTTACAGCATGGA-CA
AAAGTGGCCACTTTTAGCGGCTGGGTAGATCTAAAAATGTTGGTCTCATCCTAAAAGGTCCAGCGGAATCTGCGCTAGGT
TGCAAGAATGATGTGCCCACAC------------------------------------AACCCAATCTGCTTTTATGAAA
TCCCTTGTCGTACGTGCAAAGGCTAAAGTGTTCAACTTACGGTCCATGTAA---TCACCCTGACAAGTTTTACAG---TA
TCTTCTCACTAAAATCCAGGGTACATTTTGAGTCACTACTAGTTGTAACCGTATAGCTTGGGTAGCAAGAAAAACTTGCC
GACAAGCGACTAGTGCGTAGTGGTATA-AATTTCTGCAGTAACCCATGGTGTTACTCCACAATCCACATGGAAAGTTTAC
CTGAATAAATGGCAGTTTTT--CTGAATATTAATATTGAGCTTCGTTCTGCTGAAATG---------CAC----------
-------TGAATCAACAAACTGTCTTAACTGCCCTGGTTCCAGTCTTGTGAACATCAAGAGTTCAAGACAAGTCACGTCC
GTTTCATTCATTGCGTTCATGCAATTCTGTTTCGTCCTCCCCACTCTCTCTCTGGTTTGTTCAAGTCGTGCTCATGTGGG
TCAATGTGGCCTTTGTGCCCTGTGGGGTATTCTC----CGCTATAAGTGTGCATACTATCGTAGCTTAGGAGCCAACTAA
TTAGGCCACTTCTTTTGGTAGGGAAAGAAATATGATGTCTTAAAATCATCGCATAACATGTGCAGTGCCTTCTTCTGAAT
AGAATTTCGAGCTCAGTGTTAACCTGCTCCTTTCAACGAGTAG-TTTCTGAGTAATAACACTGCAATAAACCGTTACCTT
GCTCCTTTTACGACTAGCTTCATGTGGAACTCTGCATGCAGGTTCTGGAGCAGCGGGGCTGAGCAATGGCCCAACATCGT
GCCCCAGGAGGCGGCGGTGTCCAAGGTGTTCGGGTCCAGGTCCATGGACAAGTACGGGCCGCGGCTCACCCTGCTGGAGG
CCACCATGAGGACCGACGACGTGGGCAGCCCCTTCGTGAAGCTGGTGAAGCACGGCAGCGCGGCGCTGATCAACGCCTAC
ACGCGGACGGGCTTCCCCTTCGACTCCTGGGAGGTGAAGGCGCTGCTGCTGGAGGCGCTCGTCTCCGAGGACGCCGCGGC
CGCCCAGGCCGAGCGGTTCCAGCAGGCCAACGAGTCGTGCGTCTGAATCCCATGGTATGTATCAA-CAGAAATGCAGAAT
GGTACGTGTTGTAGCAGCGTGTTCGTGGTAGGTCACCGCTTCTGTGACTTGGGAGGGAGATCTCAAGCAGTGCTCCCATT
GGCGGTTGGTATGTGT------TCTTGGTCTCTTGGATGCCTACGGGATGTTTGAAATGGTGAAGTGTGACTTGCACTCG
CGTGTGTTTGTGCAATTAATGTACGTAGCCTGTGGCTGTAGTAGTG-TCTGCGTGTGTCGTCGTGCAAGACTGCGATC--
--TGGTTGGATGGATGGAGCGTTTC---ATGTCGCCGTGTCGCGTTTCTATGCTGCTAATGACTTTTT--ACAAGGATTG
TCTTTCGTTTGTGATTGCCTCAGCGTGCAGT-------------------------------------------------
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>chr2A_823
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-----TACAGCGGTCTCGTGTCGGTCCCCTCGCACGCCCCTCCCGAGGAGTCTGGCAGCGCCTT-----------GCATC
GGAGCGTCGTGCTTTCAAAATTGGGCTCCATTTATTCCAAAGCCTGCAGCAAGCAGACAAACAGAGGGAGTGGTAGAGAG
TGGGACTG---------GAGAGTGAGAGCAGAGCAGAGTGAGAGAGATGGGTTCCATGGCGCTCCTCCGTTCCCTGGCCT
GCGTCCTCATCCTCCTCTGCTCGTCGCTCGGGGCAGCGAATGGGATGTATCGTAGAGCTGGCGGCGCGGAGGGGGAGGAA
GCGGGCGGCAGGGTCGCCGGCGGCGCCCGCGGCGGCGTCAGGAGCGCGTGGCCGGGGTACCTCTACACCAGAGCAGTCGG
GCGATGCACACCCCAGTAAGCACGCGCTCCCCTCCCCGGTC-CGGTTCTTGGATTTGGCTTCCCCTTGCAGAACTAAGTT
ATATTTCC------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTTTCTTGATTCTTGTGGTAGCAATGTTGGGTAGTCAGTAGTCACTCA---------CTACTGTGCT
AAAGTTAGGCCTCTAGAGTCCAATAA------------------------------------------------------
-TGTGACGAACAGTAGCATCTGTATGACTGCTGGGAGAGGAGTTCCAATAATGTGATTTCGAGGTTTACAGACTGCCTCA
AAAGCGGCCACTTTTAGCGGCTGGGTAGATCTAAAAATGTTGGTTTCATCCTAAAAGGTCCAGCGGAATCTGCACTAGGT
TGCAAGGATGATGTGCCCACACTTCACCCGCAAAAAAAAAAGGATGATGTGGCCACACAACCTAATCTGCTTTTATGAAA
TCCCTTGTCGTACGTGCAC-GGCTAAAGTGTTCAACTTGCGGTCCATGTGA---TGTTCCTGACAAGTTTTACAGGAA--
-CTTCTCACTAAAATCCAGGGTACATTTTGAGTCACTA---GTTGTAACCGTATAGCCTGGGTAGCGAGAAAAACTTGCC
AGCAAGCGACTATTGTGTAGTGGTATAG-ATTTCTGCAGTAACCCATGGTGTTACTCCACATTCCACATGGCAAGTTTAT
CCGAACAAATGGCAGTTTTT--CTG------AATATTGAGCTTACTTCTGCTGAAATG---------CACGTAGTAGTAC
TGACTACTGAATCAACACACTGTCTTAACTACCCTGGTTCCAGTCTTGTGAACATCAAGAGTTGTAGACGAGTCACGTCC
GTTTCATTCATTGCGTTCATGCAATTCTGTTTCGTCCTCCCTACG----CTCTGGTTAGTTCAAGTCGTGCTCTTGTGGG
TCAATGTGGCCTTTGTGCCCTGTGGGGCATTCTCCCTCCGCTATAAGTGTGCATACTATCGTAGCTTACGGGCCAACTTA
TTAGACCCCTTTTTCTGGTAGGGAAAGAAATATGATGTCTTAAAATCATCGCATAACATGTGGAATGCCTTCTTCTGAAG
AGAATTTCGAGCTCAGTGTTAACCTGCTCCTTTTAAAGAGTAG-TTTCTGAGTAATAACACTGCAATAAACCGTTACCTT
GCTCCTTTTACGACTAGTTTCATGTGGAACTGTGCATGCAGGTTCTGGAGCAGCGGGGCTGAGCAATGGCCCAACATCGT
GCCCCAGGAGGCGGCGGTGTCCAAGGTGTTCGGGTCCAGGTCCATGGACAAGTACGGGCCGCGGCTCACCCTGCTGGAGG
CCACCATGAGGACCGACGACGTGGGCAGCCCCTTCGTGAAGCTGGTGAAGCACGGCAGCGCGGCGCTCATCAACGCCTAC
ACGCGTACGGGCTTCCCCTTCGACTCCTGGGAGGTGAAGGCGCTGCTGCTGGAGGCGCTCGTCTCCGAGGACGCCGCCGC
CGCCCAGGCCGAGCGGTTCCAGCAGGCCAACGAGTCGTGCGTCTGAATCCCATGGTATGTATCAAACAGAAATCCAGAAT
GGTACGTGTT-------------CGTGGTAGGTCACCGCTTCTGTGACTTGGGAGGGAGATCTCAAGCAGTGCCCCCGTT
CGCGGTTGGCATGTGT------T---------------GCCTACGGGATATTTGAAACGGTGAAGTGTGACTCGCACT--
CGTGTGTTTGTGC----AATGTGCGTAGCCTGTAGCTGTAGTAGTGTTCTGCGTGTGTCGTCGTGTAAGACTGCGATCTG
GATGGTTGGATGGATGGAGCGTTTTATTATGTCGCCGTGTCGTGTTTCTATGCTGCTAATGACTTTTTTTACAAGGACTG
TCTTTCGTTTGTGATTGCCTCAGCGTGGAG--------------------------------------------------
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>chr3D_3150
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------------------------------TCAGGGGCGGAGCTGGAGCTAATGCCACCCTGATGCACCCCTTTAACATG
GCGTAAAATTTTCAAGCAACAGTGTATTGAATAGAGGTGTATTCCATAACTTCTAA------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AACATATTATTAGACATAATA
GAAGGTGATGTATATAAAAAATGTACGTACCGGTCAAAATGGTTACCATAATGATGAATCAAAGAACAAAATTACTTGAA
AAGTATGTCTTGGGTTTCCAAATTCCAAAATATATCATCAGACATCAAGGTTTCTTACCCTACAAGATAAAAAGGTAGAA
TTAAACTTTCAAGTAAAACATAATAAAATGAACGAAAGTACTTAAGGGCCTTTCTAAAAAAACTGAATATGGGAAATTGA
TGTCTCTTGGCTGACAATGTCTATTAACCAAGTACTTTCTTCTTACCAGATCTTTCAAATTAGAATGACAATGTTCTATC
AACTTCATATTGCCTCGATCATACTGAATCTCCCATTCCCAATTCATGTCGTCT
>SNPs
----------------------------------------------------------S---------------------
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-----------------------------------------------------------S--------------------
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----------------------S---------------------------------------------------------
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----------------------------------------------------------------------SSSSSSSSSS
SSSSS-----------------------S----------------------------------------SS---------
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--------------SSS-----------SSSS--------------------------------------S--S------
--------------------------S---------------------------------------SS------------
---------------S----------------------------------------------------------------
---S------------------S-------S----------S--------------------------------------
---SS-S-------------S--S--SS----SS-SSSSSSS-SSSSSSS-SSSS-S-SSSSSSS-S--SSS-SSSS-S-
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------SS-SS---------SSSSS--------------------
------------------------S------------------------------S----------S-------------
-----------------------------------S------S-------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S-----------------------S------------------
----------S---------------------------------------------------------------S-----
---------------------------------S---S------------SSSS---------------------S-S--
---------------------------------------------------------------------S----------
---------------------------------------------SS------------S------S-------------
-------S------------SS------------------------------------SSSSSSSSS-------------
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------------------------------------------------------S-------------------------
---------S---------------------------S------------------------------------------
-----------S-------------------------------S------------------------------------
---------------------------------SS-----------------------S---------------------
S-------------------------------------------------------------------------------
-------------S-----S-SS--------------------------------S------------------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
--S--------------------S------------------------------------------------S-------
--------------S-SSSSSS--------------------S----S--------------------------------
S---------------------------------------------SS---------S-S--------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------S-----------------------
--S----S------------S----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------
S--------------------SS----------------------------S---------------------------S
-------------------------S------------------------------------------------------
----------------------------------------------S-S---------------S------S--------
--------------------------------------------------------------------S-----------
--------S--------------S--------------------------S---
>forward_1190
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--------------------------------------------------TCTAGCAGTAGCAGCGCATC----------
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>reverse_3283
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--CACGTGTTGGTGGTAGGTCA----------------------------------------------------------
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