Multiple sequence alignment - TraesCS2B01G396100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G396100 chr2B 100.000 2362 0 0 1 2362 562706301 562703940 0.000000e+00 4362.0
1 TraesCS2B01G396100 chr2B 79.967 609 80 19 1660 2232 212569612 212569010 6.080000e-111 411.0
2 TraesCS2B01G396100 chr2D 89.168 1274 95 24 350 1605 479315854 479314606 0.000000e+00 1548.0
3 TraesCS2B01G396100 chr2D 81.752 548 65 9 1660 2173 170473191 170473737 2.170000e-115 425.0
4 TraesCS2B01G396100 chr2D 93.333 45 3 0 305 349 617043382 617043426 1.520000e-07 67.6
5 TraesCS2B01G396100 chr2D 94.595 37 2 0 313 349 563022715 563022679 9.120000e-05 58.4
6 TraesCS2B01G396100 chr2A 86.832 767 47 17 368 1127 622183451 622182732 0.000000e+00 808.0
7 TraesCS2B01G396100 chr2A 90.094 212 19 2 1263 1474 622182382 622182173 8.320000e-70 274.0
8 TraesCS2B01G396100 chr2A 83.168 303 42 7 1 302 31647258 31647552 3.870000e-68 268.0
9 TraesCS2B01G396100 chr2A 95.070 142 5 1 1466 1605 622182022 622181881 3.060000e-54 222.0
10 TraesCS2B01G396100 chr2A 92.188 128 10 0 1134 1261 622182696 622182569 5.190000e-42 182.0
11 TraesCS2B01G396100 chr2A 88.506 87 10 0 2274 2360 144917524 144917610 3.210000e-19 106.0
12 TraesCS2B01G396100 chr3D 79.076 736 104 21 1660 2360 48817946 48818666 5.950000e-126 460.0
13 TraesCS2B01G396100 chr3D 94.737 38 2 0 313 350 27171065 27171102 2.540000e-05 60.2
14 TraesCS2B01G396100 chr1D 80.231 607 83 13 1655 2225 180248329 180248934 2.810000e-114 422.0
15 TraesCS2B01G396100 chr1D 77.720 579 85 32 1673 2215 187647768 187648338 4.900000e-82 315.0
16 TraesCS2B01G396100 chr1D 85.714 98 14 0 2263 2360 144600212 144600115 1.150000e-18 104.0
17 TraesCS2B01G396100 chr1D 94.595 37 2 0 313 349 46733 46697 9.120000e-05 58.4
18 TraesCS2B01G396100 chr7D 80.331 605 76 26 1660 2228 531111640 531112237 3.630000e-113 418.0
19 TraesCS2B01G396100 chr7D 85.374 294 32 7 1947 2231 348188433 348188142 6.380000e-76 294.0
20 TraesCS2B01G396100 chr7D 74.263 373 64 12 2018 2360 189828399 189828769 6.850000e-26 128.0
21 TraesCS2B01G396100 chr7D 81.818 143 26 0 2218 2360 531112269 531112411 1.150000e-23 121.0
22 TraesCS2B01G396100 chr7D 94.595 37 2 0 313 349 17007123 17007159 9.120000e-05 58.4
23 TraesCS2B01G396100 chr1A 80.000 610 84 18 1641 2215 197138912 197139518 1.310000e-112 416.0
24 TraesCS2B01G396100 chr1A 81.854 507 59 15 1662 2139 86653265 86653767 1.700000e-106 396.0
25 TraesCS2B01G396100 chr1A 77.477 444 62 23 1799 2209 274342391 274341953 5.080000e-57 231.0
26 TraesCS2B01G396100 chr5A 85.347 389 52 5 1660 2045 366119830 366119444 4.730000e-107 398.0
27 TraesCS2B01G396100 chr5A 89.130 46 4 1 305 349 27131718 27131673 3.280000e-04 56.5
28 TraesCS2B01G396100 chr4B 77.467 750 109 33 1660 2353 510565155 510564410 6.120000e-106 394.0
29 TraesCS2B01G396100 chr4B 89.362 47 5 0 303 349 614814504 614814458 2.540000e-05 60.2
30 TraesCS2B01G396100 chr3A 78.639 632 96 19 1661 2257 61306008 61306635 1.320000e-102 383.0
31 TraesCS2B01G396100 chr3A 81.455 426 64 11 1947 2360 55770031 55770453 3.760000e-88 335.0
32 TraesCS2B01G396100 chr6B 78.767 584 88 9 1683 2231 260113714 260113132 2.230000e-95 359.0
33 TraesCS2B01G396100 chr6B 86.066 122 17 0 2239 2360 102851237 102851116 5.300000e-27 132.0
34 TraesCS2B01G396100 chr6B 84.694 98 15 0 2263 2360 44977434 44977531 5.370000e-17 99.0
35 TraesCS2B01G396100 chr4A 79.418 447 57 23 1947 2360 676527255 676526811 1.380000e-72 283.0
36 TraesCS2B01G396100 chr4A 91.489 47 4 0 303 349 604019907 604019861 5.450000e-07 65.8
37 TraesCS2B01G396100 chr7A 82.178 303 45 7 1 302 230956456 230956750 3.900000e-63 252.0
38 TraesCS2B01G396100 chr3B 82.119 302 46 6 1 302 447282288 447282581 3.900000e-63 252.0
39 TraesCS2B01G396100 chr3B 82.353 153 27 0 2208 2360 94520005 94520157 1.470000e-27 134.0
40 TraesCS2B01G396100 chr3B 94.444 36 2 0 314 349 754852854 754852819 3.280000e-04 56.5
41 TraesCS2B01G396100 chr4D 84.956 113 17 0 2248 2360 137406670 137406558 5.330000e-22 115.0
42 TraesCS2B01G396100 chr4D 94.444 36 2 0 314 349 310010115 310010080 3.280000e-04 56.5
43 TraesCS2B01G396100 chrUn 97.222 36 1 0 314 349 76348452 76348417 7.050000e-06 62.1
44 TraesCS2B01G396100 chrUn 97.222 36 1 0 314 349 317361304 317361339 7.050000e-06 62.1
45 TraesCS2B01G396100 chrUn 94.444 36 2 0 314 349 167002889 167002924 3.280000e-04 56.5
46 TraesCS2B01G396100 chrUn 94.444 36 2 0 314 349 167003623 167003658 3.280000e-04 56.5
47 TraesCS2B01G396100 chrUn 94.444 36 2 0 314 349 167083406 167083441 3.280000e-04 56.5
48 TraesCS2B01G396100 chrUn 94.444 36 2 0 314 349 373170616 373170651 3.280000e-04 56.5
49 TraesCS2B01G396100 chrUn 94.444 36 2 0 314 349 394168383 394168418 3.280000e-04 56.5
50 TraesCS2B01G396100 chr6A 97.222 36 1 0 314 349 151756423 151756388 7.050000e-06 62.1
51 TraesCS2B01G396100 chr5D 91.304 46 3 1 305 349 511615791 511615836 7.050000e-06 62.1
52 TraesCS2B01G396100 chr1B 97.222 36 1 0 314 349 664948317 664948282 7.050000e-06 62.1
53 TraesCS2B01G396100 chr5B 89.130 46 5 0 304 349 522542132 522542177 9.120000e-05 58.4
54 TraesCS2B01G396100 chr7B 87.234 47 6 0 303 349 23722582 23722628 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G396100 chr2B 562703940 562706301 2361 True 4362.0 4362 100.0000 1 2362 1 chr2B.!!$R2 2361
1 TraesCS2B01G396100 chr2B 212569010 212569612 602 True 411.0 411 79.9670 1660 2232 1 chr2B.!!$R1 572
2 TraesCS2B01G396100 chr2D 479314606 479315854 1248 True 1548.0 1548 89.1680 350 1605 1 chr2D.!!$R1 1255
3 TraesCS2B01G396100 chr2D 170473191 170473737 546 False 425.0 425 81.7520 1660 2173 1 chr2D.!!$F1 513
4 TraesCS2B01G396100 chr2A 622181881 622183451 1570 True 371.5 808 91.0460 368 1605 4 chr2A.!!$R1 1237
5 TraesCS2B01G396100 chr3D 48817946 48818666 720 False 460.0 460 79.0760 1660 2360 1 chr3D.!!$F2 700
6 TraesCS2B01G396100 chr1D 180248329 180248934 605 False 422.0 422 80.2310 1655 2225 1 chr1D.!!$F1 570
7 TraesCS2B01G396100 chr1D 187647768 187648338 570 False 315.0 315 77.7200 1673 2215 1 chr1D.!!$F2 542
8 TraesCS2B01G396100 chr7D 531111640 531112411 771 False 269.5 418 81.0745 1660 2360 2 chr7D.!!$F3 700
9 TraesCS2B01G396100 chr1A 197138912 197139518 606 False 416.0 416 80.0000 1641 2215 1 chr1A.!!$F2 574
10 TraesCS2B01G396100 chr1A 86653265 86653767 502 False 396.0 396 81.8540 1662 2139 1 chr1A.!!$F1 477
11 TraesCS2B01G396100 chr4B 510564410 510565155 745 True 394.0 394 77.4670 1660 2353 1 chr4B.!!$R1 693
12 TraesCS2B01G396100 chr3A 61306008 61306635 627 False 383.0 383 78.6390 1661 2257 1 chr3A.!!$F2 596
13 TraesCS2B01G396100 chr6B 260113132 260113714 582 True 359.0 359 78.7670 1683 2231 1 chr6B.!!$R2 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.037605 CTTTACGGCGGTGGTCTTCT 60.038 55.0 13.24 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2439 0.173708 GACCTCTGTCGATCCCACAC 59.826 60.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.302832 AGGTGGTTGCAGCAGTAGC 60.303 57.895 2.05 0.00 42.56 3.58
44 45 4.883026 GCAGTGGCATGCTTGAAG 57.117 55.556 18.92 5.54 43.07 3.02
45 46 1.445582 GCAGTGGCATGCTTGAAGC 60.446 57.895 18.92 10.84 43.07 3.86
54 55 4.112341 GCTTGAAGCAGCTGCCGG 62.112 66.667 34.39 19.80 41.89 6.13
55 56 4.112341 CTTGAAGCAGCTGCCGGC 62.112 66.667 34.39 22.73 43.38 6.13
75 76 4.320456 CCTGCAGCCGAGTGTGGT 62.320 66.667 8.66 0.00 0.00 4.16
76 77 3.046087 CTGCAGCCGAGTGTGGTG 61.046 66.667 0.00 0.00 0.00 4.17
79 80 4.969196 CAGCCGAGTGTGGTGCGT 62.969 66.667 0.00 0.00 0.00 5.24
80 81 4.664677 AGCCGAGTGTGGTGCGTC 62.665 66.667 0.00 0.00 0.00 5.19
82 83 4.640855 CCGAGTGTGGTGCGTCGT 62.641 66.667 0.00 0.00 0.00 4.34
83 84 3.394874 CGAGTGTGGTGCGTCGTG 61.395 66.667 0.00 0.00 0.00 4.35
84 85 3.036084 GAGTGTGGTGCGTCGTGG 61.036 66.667 0.00 0.00 0.00 4.94
87 88 4.539083 TGTGGTGCGTCGTGGCTT 62.539 61.111 0.00 0.00 0.00 4.35
88 89 3.276846 GTGGTGCGTCGTGGCTTT 61.277 61.111 0.00 0.00 0.00 3.51
89 90 1.957186 GTGGTGCGTCGTGGCTTTA 60.957 57.895 0.00 0.00 0.00 1.85
90 91 1.957186 TGGTGCGTCGTGGCTTTAC 60.957 57.895 0.00 0.00 0.00 2.01
91 92 2.468532 GTGCGTCGTGGCTTTACG 59.531 61.111 0.00 0.00 44.98 3.18
92 93 2.735478 TGCGTCGTGGCTTTACGG 60.735 61.111 8.38 0.00 43.85 4.02
93 94 4.143363 GCGTCGTGGCTTTACGGC 62.143 66.667 8.38 6.15 44.59 5.68
95 96 3.484547 GTCGTGGCTTTACGGCGG 61.485 66.667 13.24 0.00 43.85 6.13
96 97 3.993584 TCGTGGCTTTACGGCGGT 61.994 61.111 13.24 1.39 43.85 5.68
97 98 3.784412 CGTGGCTTTACGGCGGTG 61.784 66.667 13.24 0.00 42.02 4.94
98 99 3.428282 GTGGCTTTACGGCGGTGG 61.428 66.667 13.24 0.00 42.02 4.61
99 100 3.943691 TGGCTTTACGGCGGTGGT 61.944 61.111 13.24 0.00 42.02 4.16
100 101 3.122971 GGCTTTACGGCGGTGGTC 61.123 66.667 13.24 0.00 0.00 4.02
101 102 2.047560 GCTTTACGGCGGTGGTCT 60.048 61.111 13.24 0.00 0.00 3.85
102 103 1.670083 GCTTTACGGCGGTGGTCTT 60.670 57.895 13.24 0.00 0.00 3.01
103 104 1.632948 GCTTTACGGCGGTGGTCTTC 61.633 60.000 13.24 0.00 0.00 2.87
104 105 0.037605 CTTTACGGCGGTGGTCTTCT 60.038 55.000 13.24 0.00 0.00 2.85
105 106 0.320073 TTTACGGCGGTGGTCTTCTG 60.320 55.000 13.24 0.00 0.00 3.02
106 107 1.466025 TTACGGCGGTGGTCTTCTGT 61.466 55.000 13.24 0.00 0.00 3.41
107 108 2.149803 TACGGCGGTGGTCTTCTGTG 62.150 60.000 13.24 0.00 0.00 3.66
108 109 2.741092 GGCGGTGGTCTTCTGTGA 59.259 61.111 0.00 0.00 0.00 3.58
109 110 1.668151 GGCGGTGGTCTTCTGTGAC 60.668 63.158 0.00 0.00 36.31 3.67
110 111 2.022129 GCGGTGGTCTTCTGTGACG 61.022 63.158 0.00 0.00 37.81 4.35
111 112 1.658114 CGGTGGTCTTCTGTGACGA 59.342 57.895 0.00 0.00 37.81 4.20
112 113 0.387367 CGGTGGTCTTCTGTGACGAG 60.387 60.000 0.00 0.00 37.81 4.18
113 114 0.959553 GGTGGTCTTCTGTGACGAGA 59.040 55.000 0.00 0.00 37.81 4.04
114 115 1.068194 GGTGGTCTTCTGTGACGAGAG 60.068 57.143 0.00 0.00 37.81 3.20
115 116 1.880675 GTGGTCTTCTGTGACGAGAGA 59.119 52.381 0.00 0.00 37.81 3.10
116 117 2.293677 GTGGTCTTCTGTGACGAGAGAA 59.706 50.000 0.00 0.00 37.81 2.87
117 118 2.554462 TGGTCTTCTGTGACGAGAGAAG 59.446 50.000 5.15 5.15 46.44 2.85
118 119 2.591133 GTCTTCTGTGACGAGAGAAGC 58.409 52.381 6.35 0.28 45.27 3.86
119 120 2.030717 GTCTTCTGTGACGAGAGAAGCA 60.031 50.000 6.35 0.00 45.27 3.91
120 121 2.030717 TCTTCTGTGACGAGAGAAGCAC 60.031 50.000 6.35 0.00 45.27 4.40
121 122 1.318576 TCTGTGACGAGAGAAGCACA 58.681 50.000 0.00 0.00 38.23 4.57
122 123 1.681264 TCTGTGACGAGAGAAGCACAA 59.319 47.619 0.00 0.00 39.27 3.33
123 124 2.057316 CTGTGACGAGAGAAGCACAAG 58.943 52.381 0.00 0.00 39.27 3.16
124 125 1.681264 TGTGACGAGAGAAGCACAAGA 59.319 47.619 0.00 0.00 37.87 3.02
125 126 2.100749 TGTGACGAGAGAAGCACAAGAA 59.899 45.455 0.00 0.00 37.87 2.52
126 127 3.123804 GTGACGAGAGAAGCACAAGAAA 58.876 45.455 0.00 0.00 33.73 2.52
127 128 3.183373 GTGACGAGAGAAGCACAAGAAAG 59.817 47.826 0.00 0.00 33.73 2.62
128 129 3.068165 TGACGAGAGAAGCACAAGAAAGA 59.932 43.478 0.00 0.00 0.00 2.52
129 130 3.648009 ACGAGAGAAGCACAAGAAAGAG 58.352 45.455 0.00 0.00 0.00 2.85
130 131 3.319405 ACGAGAGAAGCACAAGAAAGAGA 59.681 43.478 0.00 0.00 0.00 3.10
131 132 3.919804 CGAGAGAAGCACAAGAAAGAGAG 59.080 47.826 0.00 0.00 0.00 3.20
132 133 4.320861 CGAGAGAAGCACAAGAAAGAGAGA 60.321 45.833 0.00 0.00 0.00 3.10
133 134 5.138125 AGAGAAGCACAAGAAAGAGAGAG 57.862 43.478 0.00 0.00 0.00 3.20
134 135 4.832266 AGAGAAGCACAAGAAAGAGAGAGA 59.168 41.667 0.00 0.00 0.00 3.10
135 136 4.881920 AGAAGCACAAGAAAGAGAGAGAC 58.118 43.478 0.00 0.00 0.00 3.36
136 137 4.343526 AGAAGCACAAGAAAGAGAGAGACA 59.656 41.667 0.00 0.00 0.00 3.41
137 138 3.988819 AGCACAAGAAAGAGAGAGACAC 58.011 45.455 0.00 0.00 0.00 3.67
138 139 3.386078 AGCACAAGAAAGAGAGAGACACA 59.614 43.478 0.00 0.00 0.00 3.72
139 140 3.740321 GCACAAGAAAGAGAGAGACACAG 59.260 47.826 0.00 0.00 0.00 3.66
140 141 3.740321 CACAAGAAAGAGAGAGACACAGC 59.260 47.826 0.00 0.00 0.00 4.40
141 142 3.386078 ACAAGAAAGAGAGAGACACAGCA 59.614 43.478 0.00 0.00 0.00 4.41
142 143 4.141846 ACAAGAAAGAGAGAGACACAGCAA 60.142 41.667 0.00 0.00 0.00 3.91
143 144 4.679373 AGAAAGAGAGAGACACAGCAAA 57.321 40.909 0.00 0.00 0.00 3.68
144 145 5.028549 AGAAAGAGAGAGACACAGCAAAA 57.971 39.130 0.00 0.00 0.00 2.44
145 146 5.055812 AGAAAGAGAGAGACACAGCAAAAG 58.944 41.667 0.00 0.00 0.00 2.27
146 147 4.679373 AAGAGAGAGACACAGCAAAAGA 57.321 40.909 0.00 0.00 0.00 2.52
147 148 4.255833 AGAGAGAGACACAGCAAAAGAG 57.744 45.455 0.00 0.00 0.00 2.85
148 149 3.894427 AGAGAGAGACACAGCAAAAGAGA 59.106 43.478 0.00 0.00 0.00 3.10
149 150 4.527816 AGAGAGAGACACAGCAAAAGAGAT 59.472 41.667 0.00 0.00 0.00 2.75
150 151 5.714333 AGAGAGAGACACAGCAAAAGAGATA 59.286 40.000 0.00 0.00 0.00 1.98
151 152 6.210385 AGAGAGAGACACAGCAAAAGAGATAA 59.790 38.462 0.00 0.00 0.00 1.75
152 153 6.397272 AGAGAGACACAGCAAAAGAGATAAG 58.603 40.000 0.00 0.00 0.00 1.73
153 154 6.210385 AGAGAGACACAGCAAAAGAGATAAGA 59.790 38.462 0.00 0.00 0.00 2.10
154 155 6.945218 AGAGACACAGCAAAAGAGATAAGAT 58.055 36.000 0.00 0.00 0.00 2.40
155 156 6.817641 AGAGACACAGCAAAAGAGATAAGATG 59.182 38.462 0.00 0.00 0.00 2.90
156 157 6.705302 AGACACAGCAAAAGAGATAAGATGA 58.295 36.000 0.00 0.00 0.00 2.92
157 158 7.164122 AGACACAGCAAAAGAGATAAGATGAA 58.836 34.615 0.00 0.00 0.00 2.57
158 159 7.333921 AGACACAGCAAAAGAGATAAGATGAAG 59.666 37.037 0.00 0.00 0.00 3.02
159 160 6.373774 ACACAGCAAAAGAGATAAGATGAAGG 59.626 38.462 0.00 0.00 0.00 3.46
160 161 6.596888 CACAGCAAAAGAGATAAGATGAAGGA 59.403 38.462 0.00 0.00 0.00 3.36
161 162 7.120285 CACAGCAAAAGAGATAAGATGAAGGAA 59.880 37.037 0.00 0.00 0.00 3.36
162 163 7.833183 ACAGCAAAAGAGATAAGATGAAGGAAT 59.167 33.333 0.00 0.00 0.00 3.01
163 164 8.129840 CAGCAAAAGAGATAAGATGAAGGAATG 58.870 37.037 0.00 0.00 0.00 2.67
164 165 8.051535 AGCAAAAGAGATAAGATGAAGGAATGA 58.948 33.333 0.00 0.00 0.00 2.57
165 166 8.127954 GCAAAAGAGATAAGATGAAGGAATGAC 58.872 37.037 0.00 0.00 0.00 3.06
166 167 8.333908 CAAAAGAGATAAGATGAAGGAATGACG 58.666 37.037 0.00 0.00 0.00 4.35
167 168 6.968263 AGAGATAAGATGAAGGAATGACGA 57.032 37.500 0.00 0.00 0.00 4.20
168 169 7.353414 AGAGATAAGATGAAGGAATGACGAA 57.647 36.000 0.00 0.00 0.00 3.85
169 170 7.432869 AGAGATAAGATGAAGGAATGACGAAG 58.567 38.462 0.00 0.00 0.00 3.79
170 171 6.520272 AGATAAGATGAAGGAATGACGAAGG 58.480 40.000 0.00 0.00 0.00 3.46
171 172 4.826274 AAGATGAAGGAATGACGAAGGA 57.174 40.909 0.00 0.00 0.00 3.36
172 173 4.826274 AGATGAAGGAATGACGAAGGAA 57.174 40.909 0.00 0.00 0.00 3.36
173 174 5.165961 AGATGAAGGAATGACGAAGGAAA 57.834 39.130 0.00 0.00 0.00 3.13
174 175 5.560724 AGATGAAGGAATGACGAAGGAAAA 58.439 37.500 0.00 0.00 0.00 2.29
175 176 5.645497 AGATGAAGGAATGACGAAGGAAAAG 59.355 40.000 0.00 0.00 0.00 2.27
176 177 4.968259 TGAAGGAATGACGAAGGAAAAGA 58.032 39.130 0.00 0.00 0.00 2.52
177 178 5.373222 TGAAGGAATGACGAAGGAAAAGAA 58.627 37.500 0.00 0.00 0.00 2.52
178 179 5.825679 TGAAGGAATGACGAAGGAAAAGAAA 59.174 36.000 0.00 0.00 0.00 2.52
179 180 6.490040 TGAAGGAATGACGAAGGAAAAGAAAT 59.510 34.615 0.00 0.00 0.00 2.17
180 181 6.502136 AGGAATGACGAAGGAAAAGAAATC 57.498 37.500 0.00 0.00 0.00 2.17
181 182 6.003950 AGGAATGACGAAGGAAAAGAAATCA 58.996 36.000 0.00 0.00 0.00 2.57
182 183 6.072452 AGGAATGACGAAGGAAAAGAAATCAC 60.072 38.462 0.00 0.00 0.00 3.06
183 184 4.725556 TGACGAAGGAAAAGAAATCACG 57.274 40.909 0.00 0.00 0.00 4.35
184 185 3.496884 TGACGAAGGAAAAGAAATCACGG 59.503 43.478 0.00 0.00 0.00 4.94
185 186 3.735591 ACGAAGGAAAAGAAATCACGGA 58.264 40.909 0.00 0.00 0.00 4.69
186 187 4.131596 ACGAAGGAAAAGAAATCACGGAA 58.868 39.130 0.00 0.00 0.00 4.30
187 188 4.213482 ACGAAGGAAAAGAAATCACGGAAG 59.787 41.667 0.00 0.00 0.00 3.46
188 189 4.451096 CGAAGGAAAAGAAATCACGGAAGA 59.549 41.667 0.00 0.00 0.00 2.87
189 190 5.122396 CGAAGGAAAAGAAATCACGGAAGAT 59.878 40.000 0.00 0.00 0.00 2.40
190 191 5.886960 AGGAAAAGAAATCACGGAAGATG 57.113 39.130 0.00 0.00 0.00 2.90
191 192 4.702131 AGGAAAAGAAATCACGGAAGATGG 59.298 41.667 0.00 0.00 0.00 3.51
192 193 4.142381 GGAAAAGAAATCACGGAAGATGGG 60.142 45.833 0.00 0.00 0.00 4.00
193 194 4.301072 AAAGAAATCACGGAAGATGGGA 57.699 40.909 0.00 0.00 0.00 4.37
194 195 4.301072 AAGAAATCACGGAAGATGGGAA 57.699 40.909 0.00 0.00 0.00 3.97
195 196 3.878778 AGAAATCACGGAAGATGGGAAG 58.121 45.455 0.00 0.00 0.00 3.46
196 197 2.717639 AATCACGGAAGATGGGAAGG 57.282 50.000 0.00 0.00 0.00 3.46
197 198 0.181350 ATCACGGAAGATGGGAAGGC 59.819 55.000 0.00 0.00 0.00 4.35
198 199 1.452108 CACGGAAGATGGGAAGGCC 60.452 63.158 0.00 0.00 0.00 5.19
208 209 4.035102 GGAAGGCCCCTGACGCTT 62.035 66.667 0.00 0.00 0.00 4.68
209 210 2.436824 GAAGGCCCCTGACGCTTC 60.437 66.667 0.00 0.00 0.00 3.86
210 211 2.930562 AAGGCCCCTGACGCTTCT 60.931 61.111 0.00 0.00 0.00 2.85
211 212 3.259633 AAGGCCCCTGACGCTTCTG 62.260 63.158 0.00 0.00 0.00 3.02
212 213 4.785453 GGCCCCTGACGCTTCTGG 62.785 72.222 8.94 8.94 39.94 3.86
213 214 3.706373 GCCCCTGACGCTTCTGGA 61.706 66.667 16.50 0.00 42.26 3.86
214 215 2.581354 CCCCTGACGCTTCTGGAG 59.419 66.667 16.50 0.45 42.26 3.86
215 216 1.984570 CCCCTGACGCTTCTGGAGA 60.985 63.158 16.50 0.00 42.26 3.71
216 217 1.333636 CCCCTGACGCTTCTGGAGAT 61.334 60.000 16.50 0.00 42.26 2.75
217 218 0.179089 CCCTGACGCTTCTGGAGATG 60.179 60.000 16.50 0.00 42.26 2.90
218 219 0.179089 CCTGACGCTTCTGGAGATGG 60.179 60.000 10.23 0.00 42.26 3.51
219 220 0.820226 CTGACGCTTCTGGAGATGGA 59.180 55.000 0.00 0.00 0.00 3.41
220 221 0.820226 TGACGCTTCTGGAGATGGAG 59.180 55.000 0.00 0.00 0.00 3.86
221 222 1.107114 GACGCTTCTGGAGATGGAGA 58.893 55.000 0.00 0.00 0.00 3.71
222 223 0.820871 ACGCTTCTGGAGATGGAGAC 59.179 55.000 0.00 0.00 0.00 3.36
223 224 0.248825 CGCTTCTGGAGATGGAGACG 60.249 60.000 0.00 0.00 0.00 4.18
224 225 0.820871 GCTTCTGGAGATGGAGACGT 59.179 55.000 0.00 0.00 0.00 4.34
225 226 1.470632 GCTTCTGGAGATGGAGACGTG 60.471 57.143 0.00 0.00 0.00 4.49
226 227 1.135915 CTTCTGGAGATGGAGACGTGG 59.864 57.143 0.00 0.00 0.00 4.94
227 228 0.684479 TCTGGAGATGGAGACGTGGG 60.684 60.000 0.00 0.00 0.00 4.61
228 229 2.303549 CTGGAGATGGAGACGTGGGC 62.304 65.000 0.00 0.00 0.00 5.36
229 230 2.501610 GAGATGGAGACGTGGGCC 59.498 66.667 0.00 0.00 0.00 5.80
230 231 2.284625 AGATGGAGACGTGGGCCA 60.285 61.111 0.00 0.00 35.91 5.36
231 232 2.125106 GATGGAGACGTGGGCCAC 60.125 66.667 26.95 26.95 33.93 5.01
232 233 2.927856 ATGGAGACGTGGGCCACA 60.928 61.111 34.11 15.84 33.93 4.17
233 234 2.859273 GATGGAGACGTGGGCCACAG 62.859 65.000 34.11 27.14 33.93 3.66
234 235 4.394712 GGAGACGTGGGCCACAGG 62.395 72.222 34.11 21.95 40.69 4.00
244 245 2.904866 GCCACAGGCCACGTGAAA 60.905 61.111 23.06 0.00 44.06 2.69
245 246 2.908073 GCCACAGGCCACGTGAAAG 61.908 63.158 23.06 10.31 44.06 2.62
246 247 2.260869 CCACAGGCCACGTGAAAGG 61.261 63.158 23.06 0.05 36.43 3.11
251 252 2.480555 GCCACGTGAAAGGCGATG 59.519 61.111 19.30 0.00 41.70 3.84
252 253 3.039202 GCCACGTGAAAGGCGATGG 62.039 63.158 19.30 0.00 41.70 3.51
253 254 1.375396 CCACGTGAAAGGCGATGGA 60.375 57.895 19.30 0.00 34.72 3.41
254 255 1.635663 CCACGTGAAAGGCGATGGAC 61.636 60.000 19.30 0.00 34.72 4.02
255 256 1.736645 ACGTGAAAGGCGATGGACG 60.737 57.895 0.00 0.00 45.66 4.79
256 257 1.736645 CGTGAAAGGCGATGGACGT 60.737 57.895 0.00 0.00 44.60 4.34
257 258 1.787847 GTGAAAGGCGATGGACGTG 59.212 57.895 0.00 0.00 44.60 4.49
258 259 1.375396 TGAAAGGCGATGGACGTGG 60.375 57.895 0.00 0.00 44.60 4.94
259 260 2.746277 AAAGGCGATGGACGTGGC 60.746 61.111 0.00 0.00 44.60 5.01
260 261 3.254024 AAAGGCGATGGACGTGGCT 62.254 57.895 0.00 0.00 44.60 4.75
261 262 3.254024 AAGGCGATGGACGTGGCTT 62.254 57.895 5.90 5.90 42.82 4.35
262 263 1.895020 AAGGCGATGGACGTGGCTTA 61.895 55.000 9.49 0.00 45.33 3.09
263 264 1.448893 GGCGATGGACGTGGCTTAA 60.449 57.895 0.00 0.00 44.60 1.85
264 265 1.022451 GGCGATGGACGTGGCTTAAA 61.022 55.000 0.00 0.00 44.60 1.52
265 266 0.800012 GCGATGGACGTGGCTTAAAA 59.200 50.000 0.00 0.00 44.60 1.52
266 267 1.198178 GCGATGGACGTGGCTTAAAAA 59.802 47.619 0.00 0.00 44.60 1.94
267 268 2.727916 GCGATGGACGTGGCTTAAAAAG 60.728 50.000 0.00 0.00 44.60 2.27
268 269 2.727916 CGATGGACGTGGCTTAAAAAGC 60.728 50.000 0.00 3.01 44.41 3.51
277 278 2.527442 GCTTAAAAAGCGTGCGAGAT 57.473 45.000 0.00 0.00 45.74 2.75
278 279 2.431906 GCTTAAAAAGCGTGCGAGATC 58.568 47.619 0.00 0.00 45.74 2.75
279 280 2.159707 GCTTAAAAAGCGTGCGAGATCA 60.160 45.455 0.00 0.00 45.74 2.92
280 281 3.663908 CTTAAAAAGCGTGCGAGATCAG 58.336 45.455 0.00 0.00 0.00 2.90
281 282 0.166814 AAAAAGCGTGCGAGATCAGC 59.833 50.000 6.28 6.28 0.00 4.26
282 283 1.639298 AAAAGCGTGCGAGATCAGCC 61.639 55.000 10.12 2.35 0.00 4.85
283 284 4.862092 AGCGTGCGAGATCAGCCG 62.862 66.667 10.12 12.74 0.00 5.52
285 286 4.498520 CGTGCGAGATCAGCCGGT 62.499 66.667 1.90 0.00 0.00 5.28
286 287 2.583593 GTGCGAGATCAGCCGGTC 60.584 66.667 1.90 0.00 0.00 4.79
287 288 3.838271 TGCGAGATCAGCCGGTCC 61.838 66.667 1.90 0.00 0.00 4.46
288 289 3.838271 GCGAGATCAGCCGGTCCA 61.838 66.667 1.90 0.00 0.00 4.02
289 290 2.892640 CGAGATCAGCCGGTCCAA 59.107 61.111 1.90 0.00 0.00 3.53
290 291 1.218047 CGAGATCAGCCGGTCCAAA 59.782 57.895 1.90 0.00 0.00 3.28
291 292 0.391130 CGAGATCAGCCGGTCCAAAA 60.391 55.000 1.90 0.00 0.00 2.44
292 293 1.821216 GAGATCAGCCGGTCCAAAAA 58.179 50.000 1.90 0.00 0.00 1.94
293 294 1.740025 GAGATCAGCCGGTCCAAAAAG 59.260 52.381 1.90 0.00 0.00 2.27
294 295 1.351017 AGATCAGCCGGTCCAAAAAGA 59.649 47.619 1.90 0.00 0.00 2.52
295 296 2.159382 GATCAGCCGGTCCAAAAAGAA 58.841 47.619 1.90 0.00 0.00 2.52
296 297 1.314730 TCAGCCGGTCCAAAAAGAAC 58.685 50.000 1.90 0.00 0.00 3.01
297 298 0.040425 CAGCCGGTCCAAAAAGAACG 60.040 55.000 1.90 0.00 46.57 3.95
298 299 0.464916 AGCCGGTCCAAAAAGAACGT 60.465 50.000 1.90 0.00 45.56 3.99
299 300 0.382873 GCCGGTCCAAAAAGAACGTT 59.617 50.000 0.00 0.00 45.56 3.99
300 301 1.202325 GCCGGTCCAAAAAGAACGTTT 60.202 47.619 0.46 0.00 45.56 3.60
301 302 2.723209 CCGGTCCAAAAAGAACGTTTC 58.277 47.619 0.46 0.00 45.56 2.78
302 303 2.356695 CCGGTCCAAAAAGAACGTTTCT 59.643 45.455 0.46 0.00 45.56 2.52
303 304 3.547413 CCGGTCCAAAAAGAACGTTTCTC 60.547 47.826 0.46 0.00 45.56 2.87
304 305 3.311596 CGGTCCAAAAAGAACGTTTCTCT 59.688 43.478 0.46 0.00 42.05 3.10
305 306 4.201881 CGGTCCAAAAAGAACGTTTCTCTT 60.202 41.667 0.46 0.00 42.05 2.85
306 307 5.647589 GGTCCAAAAAGAACGTTTCTCTTT 58.352 37.500 0.46 4.97 43.38 2.52
318 319 9.831737 AGAACGTTTCTCTTTTTATCATGAATG 57.168 29.630 0.46 0.00 34.07 2.67
319 320 8.970691 AACGTTTCTCTTTTTATCATGAATGG 57.029 30.769 0.00 0.00 0.00 3.16
320 321 7.538575 ACGTTTCTCTTTTTATCATGAATGGG 58.461 34.615 0.00 0.00 0.00 4.00
321 322 7.176690 ACGTTTCTCTTTTTATCATGAATGGGT 59.823 33.333 0.00 0.00 0.00 4.51
322 323 7.485913 CGTTTCTCTTTTTATCATGAATGGGTG 59.514 37.037 0.00 0.00 0.00 4.61
323 324 8.522830 GTTTCTCTTTTTATCATGAATGGGTGA 58.477 33.333 0.00 0.00 0.00 4.02
324 325 8.648698 TTCTCTTTTTATCATGAATGGGTGAA 57.351 30.769 0.00 0.00 0.00 3.18
325 326 8.648698 TCTCTTTTTATCATGAATGGGTGAAA 57.351 30.769 0.00 0.00 0.00 2.69
326 327 9.087871 TCTCTTTTTATCATGAATGGGTGAAAA 57.912 29.630 0.00 0.00 0.00 2.29
327 328 9.709495 CTCTTTTTATCATGAATGGGTGAAAAA 57.291 29.630 0.00 4.17 0.00 1.94
346 347 5.717038 AAAAATTGAAGAAACGCACCTTG 57.283 34.783 0.00 0.00 0.00 3.61
347 348 2.422276 ATTGAAGAAACGCACCTTGC 57.578 45.000 0.00 0.00 40.69 4.01
348 349 1.388547 TTGAAGAAACGCACCTTGCT 58.611 45.000 0.00 0.00 42.25 3.91
401 402 2.445085 TGACCACCACCGACCACT 60.445 61.111 0.00 0.00 0.00 4.00
411 412 2.048222 CGACCACTGTCCGCACAT 60.048 61.111 0.00 0.00 38.32 3.21
416 417 1.486310 ACCACTGTCCGCACATATCAT 59.514 47.619 0.00 0.00 0.00 2.45
455 456 4.742201 CCGTCCGCACTGTCAGGG 62.742 72.222 4.53 0.02 0.00 4.45
464 465 2.185350 CTGTCAGGGCGGTAGCTG 59.815 66.667 0.00 0.00 44.37 4.24
540 542 2.091775 ACTAGTCGCTACCCCTGAATCT 60.092 50.000 0.00 0.00 0.00 2.40
649 652 1.831106 ACATCCACGCATGAACCTCTA 59.169 47.619 0.00 0.00 0.00 2.43
683 689 2.311124 ACTATACTTTCTGCACGGCC 57.689 50.000 0.00 0.00 0.00 6.13
686 692 0.324943 ATACTTTCTGCACGGCCTGT 59.675 50.000 0.00 0.00 0.00 4.00
820 833 3.607775 CGTCCTGCATTTGTGTTTCAGAG 60.608 47.826 0.00 0.00 0.00 3.35
846 859 4.936891 AGTCCTTTGTGCTGAATTTGAAC 58.063 39.130 0.00 0.00 0.00 3.18
849 862 4.402155 TCCTTTGTGCTGAATTTGAACTGT 59.598 37.500 0.00 0.00 0.00 3.55
896 909 3.570212 CCCCCATCGTCCCCATCC 61.570 72.222 0.00 0.00 0.00 3.51
938 951 8.038944 TCATATCACTGTAACCTTAAGTTGGAC 58.961 37.037 0.97 0.00 39.67 4.02
943 956 6.645415 CACTGTAACCTTAAGTTGGACTACAG 59.355 42.308 16.20 16.20 42.75 2.74
945 958 4.699925 AACCTTAAGTTGGACTACAGCA 57.300 40.909 0.97 0.00 37.29 4.41
946 959 4.910458 ACCTTAAGTTGGACTACAGCAT 57.090 40.909 0.97 0.00 31.96 3.79
949 962 2.386661 AAGTTGGACTACAGCATCCG 57.613 50.000 0.00 0.00 37.87 4.18
965 983 1.890041 CCGTTGCGAAACCACCAGA 60.890 57.895 0.00 0.00 0.00 3.86
970 988 2.198827 TGCGAAACCACCAGAATCAT 57.801 45.000 0.00 0.00 0.00 2.45
971 989 3.342377 TGCGAAACCACCAGAATCATA 57.658 42.857 0.00 0.00 0.00 2.15
972 990 3.680490 TGCGAAACCACCAGAATCATAA 58.320 40.909 0.00 0.00 0.00 1.90
973 991 3.689161 TGCGAAACCACCAGAATCATAAG 59.311 43.478 0.00 0.00 0.00 1.73
974 992 3.065371 GCGAAACCACCAGAATCATAAGG 59.935 47.826 0.00 0.00 0.00 2.69
975 993 4.261801 CGAAACCACCAGAATCATAAGGT 58.738 43.478 0.00 0.00 33.91 3.50
976 994 5.424757 CGAAACCACCAGAATCATAAGGTA 58.575 41.667 0.00 0.00 32.01 3.08
977 995 5.523916 CGAAACCACCAGAATCATAAGGTAG 59.476 44.000 0.00 0.00 32.01 3.18
978 996 6.629515 CGAAACCACCAGAATCATAAGGTAGA 60.630 42.308 0.00 0.00 32.01 2.59
979 997 5.615925 ACCACCAGAATCATAAGGTAGAC 57.384 43.478 0.00 0.00 32.01 2.59
980 998 5.030147 ACCACCAGAATCATAAGGTAGACA 58.970 41.667 0.00 0.00 32.01 3.41
981 999 5.667626 ACCACCAGAATCATAAGGTAGACAT 59.332 40.000 0.00 0.00 32.01 3.06
982 1000 6.158695 ACCACCAGAATCATAAGGTAGACATT 59.841 38.462 0.00 0.00 32.01 2.71
983 1001 6.708054 CCACCAGAATCATAAGGTAGACATTC 59.292 42.308 0.00 0.00 32.01 2.67
984 1002 7.419518 CCACCAGAATCATAAGGTAGACATTCT 60.420 40.741 0.00 0.00 32.06 2.40
985 1003 8.642432 CACCAGAATCATAAGGTAGACATTCTA 58.358 37.037 0.00 0.00 31.00 2.10
1050 1068 0.977395 CCGTCCTCTTGGTCCTTCTT 59.023 55.000 0.00 0.00 34.23 2.52
1075 1093 1.078759 CGTCGCCACAGGTGATCTTC 61.079 60.000 2.27 0.00 44.40 2.87
1077 1095 0.904649 TCGCCACAGGTGATCTTCAT 59.095 50.000 0.00 0.00 37.29 2.57
1103 1121 9.793259 TTAGTCTTCTCAATTTGTTAAGACCAT 57.207 29.630 25.62 17.98 44.50 3.55
1122 1140 3.760151 CCATCGGATGGTCAAATATGCAT 59.240 43.478 25.70 3.79 45.54 3.96
1140 1187 4.136796 TGCATCCTGTAGTATCCATTTGC 58.863 43.478 0.00 0.00 0.00 3.68
1183 1230 0.689080 ACTGCAGAGATGGGGACGAT 60.689 55.000 23.35 0.00 0.00 3.73
1274 1506 1.006571 GAGGGACGACAACTGCGAA 60.007 57.895 0.00 0.00 0.00 4.70
1324 1556 1.444119 GGCAAGTGCAAGTTCCACGA 61.444 55.000 5.52 0.00 44.36 4.35
1334 1566 2.150397 AGTTCCACGACTTCGAAAGG 57.850 50.000 5.47 4.61 43.02 3.11
1428 1663 0.179134 GACCACCCTCGTGATCTTCG 60.179 60.000 0.00 0.00 43.14 3.79
1429 1664 0.898789 ACCACCCTCGTGATCTTCGT 60.899 55.000 9.75 0.00 43.14 3.85
1434 1669 1.534175 CCCTCGTGATCTTCGTAGTGC 60.534 57.143 9.75 0.00 0.00 4.40
1440 1675 2.685897 GTGATCTTCGTAGTGCTCCTCT 59.314 50.000 0.00 0.00 0.00 3.69
1445 1680 0.328592 TCGTAGTGCTCCTCTCCTGT 59.671 55.000 0.00 0.00 0.00 4.00
1470 1864 3.677976 CGTGTACCGCTTTCCTTATTCCT 60.678 47.826 0.00 0.00 0.00 3.36
1521 1918 5.336372 GCATGCCATTTCCTTGTTACAAGTA 60.336 40.000 21.63 5.30 0.00 2.24
1531 1928 6.664515 TCCTTGTTACAAGTATTTTGCTTCG 58.335 36.000 21.63 4.23 0.00 3.79
1605 2002 6.715344 TGGACGTCTTTTATCACATTGTAC 57.285 37.500 16.46 0.00 0.00 2.90
1606 2003 5.346551 TGGACGTCTTTTATCACATTGTACG 59.653 40.000 16.46 3.63 0.00 3.67
1607 2004 5.220340 GGACGTCTTTTATCACATTGTACGG 60.220 44.000 16.46 0.00 32.47 4.02
1608 2005 4.628333 ACGTCTTTTATCACATTGTACGGG 59.372 41.667 8.72 0.00 32.47 5.28
1609 2006 4.493545 CGTCTTTTATCACATTGTACGGGC 60.494 45.833 0.00 0.00 0.00 6.13
1610 2007 4.393680 GTCTTTTATCACATTGTACGGGCA 59.606 41.667 0.00 0.00 0.00 5.36
1611 2008 5.065988 GTCTTTTATCACATTGTACGGGCAT 59.934 40.000 0.00 0.00 0.00 4.40
1612 2009 5.295787 TCTTTTATCACATTGTACGGGCATC 59.704 40.000 0.00 0.00 0.00 3.91
1613 2010 4.415881 TTATCACATTGTACGGGCATCT 57.584 40.909 0.00 0.00 0.00 2.90
1614 2011 2.309528 TCACATTGTACGGGCATCTC 57.690 50.000 0.00 0.00 0.00 2.75
1615 2012 1.134521 TCACATTGTACGGGCATCTCC 60.135 52.381 0.00 0.00 0.00 3.71
1616 2013 0.908910 ACATTGTACGGGCATCTCCA 59.091 50.000 0.00 0.00 36.21 3.86
1617 2014 1.280710 ACATTGTACGGGCATCTCCAA 59.719 47.619 0.00 0.00 36.21 3.53
1618 2015 1.670811 CATTGTACGGGCATCTCCAAC 59.329 52.381 0.00 0.00 36.21 3.77
1619 2016 0.981183 TTGTACGGGCATCTCCAACT 59.019 50.000 0.00 0.00 36.21 3.16
1620 2017 0.249120 TGTACGGGCATCTCCAACTG 59.751 55.000 0.00 0.00 36.21 3.16
1621 2018 0.249398 GTACGGGCATCTCCAACTGT 59.751 55.000 0.00 0.00 36.21 3.55
1622 2019 0.535335 TACGGGCATCTCCAACTGTC 59.465 55.000 0.00 0.00 36.21 3.51
1623 2020 1.450312 CGGGCATCTCCAACTGTCC 60.450 63.158 0.00 0.00 36.21 4.02
1624 2021 1.077429 GGGCATCTCCAACTGTCCC 60.077 63.158 0.00 0.00 36.21 4.46
1625 2022 1.450312 GGCATCTCCAACTGTCCCG 60.450 63.158 0.00 0.00 34.01 5.14
1626 2023 2.109126 GCATCTCCAACTGTCCCGC 61.109 63.158 0.00 0.00 0.00 6.13
1627 2024 1.296392 CATCTCCAACTGTCCCGCA 59.704 57.895 0.00 0.00 0.00 5.69
1638 2035 2.859165 TGTCCCGCAGAATCTTTTCT 57.141 45.000 0.00 0.00 43.09 2.52
1649 2046 3.881688 AGAATCTTTTCTGCATCCATCCG 59.118 43.478 0.00 0.00 40.74 4.18
1650 2047 2.787473 TCTTTTCTGCATCCATCCGT 57.213 45.000 0.00 0.00 0.00 4.69
1651 2048 2.358957 TCTTTTCTGCATCCATCCGTG 58.641 47.619 0.00 0.00 0.00 4.94
1667 2064 0.802222 CGTGGACTGGTCGCATACAG 60.802 60.000 0.00 0.00 40.48 2.74
1675 2072 3.002791 CTGGTCGCATACAGTTTCACAT 58.997 45.455 0.00 0.00 0.00 3.21
1678 2075 3.623060 GGTCGCATACAGTTTCACATCAT 59.377 43.478 0.00 0.00 0.00 2.45
1703 2100 4.824537 TCAAACCAACCAGATGAAATTCGA 59.175 37.500 0.00 0.00 0.00 3.71
1704 2101 5.476599 TCAAACCAACCAGATGAAATTCGAT 59.523 36.000 0.00 0.00 0.00 3.59
1712 2109 5.707298 ACCAGATGAAATTCGATCAAACACT 59.293 36.000 0.00 0.00 0.00 3.55
1790 2189 6.422776 AAACATGACGGATTTCAGTACATC 57.577 37.500 0.00 0.00 0.00 3.06
1851 2261 4.803098 ATACCTAATCTAAATCGCCGCT 57.197 40.909 0.00 0.00 0.00 5.52
1878 2289 5.188434 GGATCCATTTGTCTTCTCATGTCA 58.812 41.667 6.95 0.00 0.00 3.58
1893 2304 4.147449 TCAGGCAGCCCGATCACG 62.147 66.667 8.22 0.00 39.43 4.35
1942 2353 0.887387 TTTAGCGCAAAGGACGGCTT 60.887 50.000 11.47 0.00 36.97 4.35
1944 2355 2.725203 TAGCGCAAAGGACGGCTTGT 62.725 55.000 11.47 0.00 36.97 3.16
1945 2356 2.252260 CGCAAAGGACGGCTTGTG 59.748 61.111 0.00 0.00 0.00 3.33
2002 2439 3.121030 CTGCTTTCGTGGAGCCCG 61.121 66.667 5.31 0.00 39.38 6.13
2029 2466 1.176619 TCGACAGAGGTCCTCGCAAA 61.177 55.000 13.41 0.00 41.13 3.68
2040 2477 1.069513 TCCTCGCAAAAGAAGAACCGA 59.930 47.619 0.00 0.00 0.00 4.69
2102 2539 1.299648 CTTCATGGGACCCAAGCGA 59.700 57.895 19.58 11.92 36.95 4.93
2106 2543 2.224159 ATGGGACCCAAGCGACAGT 61.224 57.895 19.58 0.00 36.95 3.55
2174 2627 0.455295 CACTGACTCGTCGCTCTTCC 60.455 60.000 0.00 0.00 0.00 3.46
2216 2670 1.746615 GCATGGTGCGGTCACAGAT 60.747 57.895 0.00 0.00 44.87 2.90
2219 2673 1.134699 CATGGTGCGGTCACAGATACT 60.135 52.381 5.24 0.00 44.87 2.12
2228 2682 0.970427 TCACAGATACTGGAGGCGCA 60.970 55.000 10.83 0.00 35.51 6.09
2231 2685 0.176680 CAGATACTGGAGGCGCAGTT 59.823 55.000 10.83 0.00 33.26 3.16
2237 2733 2.125512 GGAGGCGCAGTTGTCGAT 60.126 61.111 10.83 0.00 0.00 3.59
2243 2739 1.284982 GCGCAGTTGTCGATGACAGT 61.285 55.000 0.30 0.00 43.69 3.55
2259 2755 3.179265 GTGATGACGCCCGTGTCG 61.179 66.667 0.00 0.00 41.87 4.35
2261 2757 4.796231 GATGACGCCCGTGTCGCT 62.796 66.667 0.00 0.00 41.87 4.93
2317 2826 0.468214 CTCCTCATCGAGTGGGCCTA 60.468 60.000 4.53 0.00 0.00 3.93
2321 2830 0.259065 TCATCGAGTGGGCCTAGAGT 59.741 55.000 4.53 0.00 0.00 3.24
2324 2833 0.917533 TCGAGTGGGCCTAGAGTAGT 59.082 55.000 4.53 0.00 0.00 2.73
2361 2870 3.061848 CGGCTTGGGACGGCAATT 61.062 61.111 0.00 0.00 40.87 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.302832 GCTACTGCTGCAACCACCT 60.303 57.895 3.02 0.00 36.03 4.00
1 2 2.680913 CGCTACTGCTGCAACCACC 61.681 63.158 3.02 0.00 36.97 4.61
2 3 2.680913 CCGCTACTGCTGCAACCAC 61.681 63.158 3.02 0.00 36.97 4.16
3 4 2.358615 CCGCTACTGCTGCAACCA 60.359 61.111 3.02 0.00 36.97 3.67
4 5 3.804193 GCCGCTACTGCTGCAACC 61.804 66.667 3.02 0.00 46.43 3.77
27 28 1.445582 GCTTCAAGCATGCCACTGC 60.446 57.895 15.66 9.23 41.89 4.40
28 29 4.883026 GCTTCAAGCATGCCACTG 57.117 55.556 15.66 9.89 41.89 3.66
37 38 4.112341 CCGGCAGCTGCTTCAAGC 62.112 66.667 35.82 18.44 43.88 4.01
38 39 4.112341 GCCGGCAGCTGCTTCAAG 62.112 66.667 35.82 20.87 41.70 3.02
58 59 4.320456 ACCACACTCGGCTGCAGG 62.320 66.667 17.12 0.31 0.00 4.85
59 60 3.046087 CACCACACTCGGCTGCAG 61.046 66.667 10.11 10.11 0.00 4.41
62 63 4.969196 ACGCACCACACTCGGCTG 62.969 66.667 0.00 0.00 0.00 4.85
63 64 4.664677 GACGCACCACACTCGGCT 62.665 66.667 0.00 0.00 0.00 5.52
65 66 4.640855 ACGACGCACCACACTCGG 62.641 66.667 0.00 0.00 0.00 4.63
66 67 3.394874 CACGACGCACCACACTCG 61.395 66.667 0.00 0.00 0.00 4.18
67 68 3.036084 CCACGACGCACCACACTC 61.036 66.667 0.00 0.00 0.00 3.51
70 71 2.646117 TAAAGCCACGACGCACCACA 62.646 55.000 0.00 0.00 0.00 4.17
71 72 1.957186 TAAAGCCACGACGCACCAC 60.957 57.895 0.00 0.00 0.00 4.16
72 73 1.957186 GTAAAGCCACGACGCACCA 60.957 57.895 0.00 0.00 0.00 4.17
73 74 2.858158 GTAAAGCCACGACGCACC 59.142 61.111 0.00 0.00 0.00 5.01
74 75 2.468532 CGTAAAGCCACGACGCAC 59.531 61.111 0.00 0.00 44.69 5.34
75 76 2.735478 CCGTAAAGCCACGACGCA 60.735 61.111 4.81 0.00 44.69 5.24
76 77 4.143363 GCCGTAAAGCCACGACGC 62.143 66.667 4.81 0.00 44.69 5.19
77 78 3.834373 CGCCGTAAAGCCACGACG 61.834 66.667 4.81 0.00 44.69 5.12
78 79 3.484547 CCGCCGTAAAGCCACGAC 61.485 66.667 4.81 0.00 44.69 4.34
79 80 3.993584 ACCGCCGTAAAGCCACGA 61.994 61.111 4.81 0.00 44.69 4.35
80 81 3.784412 CACCGCCGTAAAGCCACG 61.784 66.667 0.00 0.00 41.59 4.94
81 82 3.428282 CCACCGCCGTAAAGCCAC 61.428 66.667 0.00 0.00 0.00 5.01
82 83 3.887335 GACCACCGCCGTAAAGCCA 62.887 63.158 0.00 0.00 0.00 4.75
83 84 3.122971 GACCACCGCCGTAAAGCC 61.123 66.667 0.00 0.00 0.00 4.35
84 85 1.632948 GAAGACCACCGCCGTAAAGC 61.633 60.000 0.00 0.00 0.00 3.51
85 86 0.037605 AGAAGACCACCGCCGTAAAG 60.038 55.000 0.00 0.00 0.00 1.85
86 87 0.320073 CAGAAGACCACCGCCGTAAA 60.320 55.000 0.00 0.00 0.00 2.01
87 88 1.290955 CAGAAGACCACCGCCGTAA 59.709 57.895 0.00 0.00 0.00 3.18
88 89 1.904865 ACAGAAGACCACCGCCGTA 60.905 57.895 0.00 0.00 0.00 4.02
89 90 3.231736 ACAGAAGACCACCGCCGT 61.232 61.111 0.00 0.00 0.00 5.68
90 91 2.738521 CACAGAAGACCACCGCCG 60.739 66.667 0.00 0.00 0.00 6.46
91 92 1.668151 GTCACAGAAGACCACCGCC 60.668 63.158 0.00 0.00 32.36 6.13
92 93 2.022129 CGTCACAGAAGACCACCGC 61.022 63.158 0.00 0.00 35.07 5.68
93 94 0.387367 CTCGTCACAGAAGACCACCG 60.387 60.000 0.00 0.00 35.07 4.94
94 95 0.959553 TCTCGTCACAGAAGACCACC 59.040 55.000 0.00 0.00 35.07 4.61
95 96 1.880675 TCTCTCGTCACAGAAGACCAC 59.119 52.381 0.00 0.00 35.07 4.16
96 97 2.271944 TCTCTCGTCACAGAAGACCA 57.728 50.000 0.00 0.00 35.07 4.02
97 98 2.669950 GCTTCTCTCGTCACAGAAGACC 60.670 54.545 11.94 0.00 45.93 3.85
98 99 2.030717 TGCTTCTCTCGTCACAGAAGAC 60.031 50.000 11.94 5.02 45.93 3.01
99 100 2.030717 GTGCTTCTCTCGTCACAGAAGA 60.031 50.000 11.94 0.00 45.93 2.87
100 101 2.287849 TGTGCTTCTCTCGTCACAGAAG 60.288 50.000 4.60 4.60 45.84 2.85
101 102 1.681264 TGTGCTTCTCTCGTCACAGAA 59.319 47.619 0.00 0.00 34.87 3.02
102 103 1.318576 TGTGCTTCTCTCGTCACAGA 58.681 50.000 0.00 0.00 34.87 3.41
103 104 2.057316 CTTGTGCTTCTCTCGTCACAG 58.943 52.381 0.00 0.00 40.08 3.66
104 105 1.681264 TCTTGTGCTTCTCTCGTCACA 59.319 47.619 0.00 0.00 37.63 3.58
105 106 2.423926 TCTTGTGCTTCTCTCGTCAC 57.576 50.000 0.00 0.00 0.00 3.67
106 107 3.068165 TCTTTCTTGTGCTTCTCTCGTCA 59.932 43.478 0.00 0.00 0.00 4.35
107 108 3.643763 TCTTTCTTGTGCTTCTCTCGTC 58.356 45.455 0.00 0.00 0.00 4.20
108 109 3.319405 TCTCTTTCTTGTGCTTCTCTCGT 59.681 43.478 0.00 0.00 0.00 4.18
109 110 3.906998 TCTCTTTCTTGTGCTTCTCTCG 58.093 45.455 0.00 0.00 0.00 4.04
110 111 5.048083 TCTCTCTCTTTCTTGTGCTTCTCTC 60.048 44.000 0.00 0.00 0.00 3.20
111 112 4.832266 TCTCTCTCTTTCTTGTGCTTCTCT 59.168 41.667 0.00 0.00 0.00 3.10
112 113 4.923281 GTCTCTCTCTTTCTTGTGCTTCTC 59.077 45.833 0.00 0.00 0.00 2.87
113 114 4.343526 TGTCTCTCTCTTTCTTGTGCTTCT 59.656 41.667 0.00 0.00 0.00 2.85
114 115 4.447389 GTGTCTCTCTCTTTCTTGTGCTTC 59.553 45.833 0.00 0.00 0.00 3.86
115 116 4.141846 TGTGTCTCTCTCTTTCTTGTGCTT 60.142 41.667 0.00 0.00 0.00 3.91
116 117 3.386078 TGTGTCTCTCTCTTTCTTGTGCT 59.614 43.478 0.00 0.00 0.00 4.40
117 118 3.722147 TGTGTCTCTCTCTTTCTTGTGC 58.278 45.455 0.00 0.00 0.00 4.57
118 119 3.740321 GCTGTGTCTCTCTCTTTCTTGTG 59.260 47.826 0.00 0.00 0.00 3.33
119 120 3.386078 TGCTGTGTCTCTCTCTTTCTTGT 59.614 43.478 0.00 0.00 0.00 3.16
120 121 3.987547 TGCTGTGTCTCTCTCTTTCTTG 58.012 45.455 0.00 0.00 0.00 3.02
121 122 4.679373 TTGCTGTGTCTCTCTCTTTCTT 57.321 40.909 0.00 0.00 0.00 2.52
122 123 4.679373 TTTGCTGTGTCTCTCTCTTTCT 57.321 40.909 0.00 0.00 0.00 2.52
123 124 5.053145 TCTTTTGCTGTGTCTCTCTCTTTC 58.947 41.667 0.00 0.00 0.00 2.62
124 125 5.028549 TCTTTTGCTGTGTCTCTCTCTTT 57.971 39.130 0.00 0.00 0.00 2.52
125 126 4.343526 TCTCTTTTGCTGTGTCTCTCTCTT 59.656 41.667 0.00 0.00 0.00 2.85
126 127 3.894427 TCTCTTTTGCTGTGTCTCTCTCT 59.106 43.478 0.00 0.00 0.00 3.10
127 128 4.250116 TCTCTTTTGCTGTGTCTCTCTC 57.750 45.455 0.00 0.00 0.00 3.20
128 129 4.888326 ATCTCTTTTGCTGTGTCTCTCT 57.112 40.909 0.00 0.00 0.00 3.10
129 130 6.393990 TCTTATCTCTTTTGCTGTGTCTCTC 58.606 40.000 0.00 0.00 0.00 3.20
130 131 6.352016 TCTTATCTCTTTTGCTGTGTCTCT 57.648 37.500 0.00 0.00 0.00 3.10
131 132 6.815641 TCATCTTATCTCTTTTGCTGTGTCTC 59.184 38.462 0.00 0.00 0.00 3.36
132 133 6.705302 TCATCTTATCTCTTTTGCTGTGTCT 58.295 36.000 0.00 0.00 0.00 3.41
133 134 6.974932 TCATCTTATCTCTTTTGCTGTGTC 57.025 37.500 0.00 0.00 0.00 3.67
134 135 6.373774 CCTTCATCTTATCTCTTTTGCTGTGT 59.626 38.462 0.00 0.00 0.00 3.72
135 136 6.596888 TCCTTCATCTTATCTCTTTTGCTGTG 59.403 38.462 0.00 0.00 0.00 3.66
136 137 6.715280 TCCTTCATCTTATCTCTTTTGCTGT 58.285 36.000 0.00 0.00 0.00 4.40
137 138 7.621428 TTCCTTCATCTTATCTCTTTTGCTG 57.379 36.000 0.00 0.00 0.00 4.41
138 139 8.051535 TCATTCCTTCATCTTATCTCTTTTGCT 58.948 33.333 0.00 0.00 0.00 3.91
139 140 8.127954 GTCATTCCTTCATCTTATCTCTTTTGC 58.872 37.037 0.00 0.00 0.00 3.68
140 141 8.333908 CGTCATTCCTTCATCTTATCTCTTTTG 58.666 37.037 0.00 0.00 0.00 2.44
141 142 8.260818 TCGTCATTCCTTCATCTTATCTCTTTT 58.739 33.333 0.00 0.00 0.00 2.27
142 143 7.786030 TCGTCATTCCTTCATCTTATCTCTTT 58.214 34.615 0.00 0.00 0.00 2.52
143 144 7.353414 TCGTCATTCCTTCATCTTATCTCTT 57.647 36.000 0.00 0.00 0.00 2.85
144 145 6.968263 TCGTCATTCCTTCATCTTATCTCT 57.032 37.500 0.00 0.00 0.00 3.10
145 146 6.644592 CCTTCGTCATTCCTTCATCTTATCTC 59.355 42.308 0.00 0.00 0.00 2.75
146 147 6.325028 TCCTTCGTCATTCCTTCATCTTATCT 59.675 38.462 0.00 0.00 0.00 1.98
147 148 6.516718 TCCTTCGTCATTCCTTCATCTTATC 58.483 40.000 0.00 0.00 0.00 1.75
148 149 6.485830 TCCTTCGTCATTCCTTCATCTTAT 57.514 37.500 0.00 0.00 0.00 1.73
149 150 5.932619 TCCTTCGTCATTCCTTCATCTTA 57.067 39.130 0.00 0.00 0.00 2.10
150 151 4.826274 TCCTTCGTCATTCCTTCATCTT 57.174 40.909 0.00 0.00 0.00 2.40
151 152 4.826274 TTCCTTCGTCATTCCTTCATCT 57.174 40.909 0.00 0.00 0.00 2.90
152 153 5.643777 TCTTTTCCTTCGTCATTCCTTCATC 59.356 40.000 0.00 0.00 0.00 2.92
153 154 5.560724 TCTTTTCCTTCGTCATTCCTTCAT 58.439 37.500 0.00 0.00 0.00 2.57
154 155 4.968259 TCTTTTCCTTCGTCATTCCTTCA 58.032 39.130 0.00 0.00 0.00 3.02
155 156 5.941948 TTCTTTTCCTTCGTCATTCCTTC 57.058 39.130 0.00 0.00 0.00 3.46
156 157 6.490040 TGATTTCTTTTCCTTCGTCATTCCTT 59.510 34.615 0.00 0.00 0.00 3.36
157 158 6.003950 TGATTTCTTTTCCTTCGTCATTCCT 58.996 36.000 0.00 0.00 0.00 3.36
158 159 6.086871 GTGATTTCTTTTCCTTCGTCATTCC 58.913 40.000 0.00 0.00 0.00 3.01
159 160 5.790495 CGTGATTTCTTTTCCTTCGTCATTC 59.210 40.000 0.00 0.00 0.00 2.67
160 161 5.334879 CCGTGATTTCTTTTCCTTCGTCATT 60.335 40.000 0.00 0.00 0.00 2.57
161 162 4.154195 CCGTGATTTCTTTTCCTTCGTCAT 59.846 41.667 0.00 0.00 0.00 3.06
162 163 3.496884 CCGTGATTTCTTTTCCTTCGTCA 59.503 43.478 0.00 0.00 0.00 4.35
163 164 3.744426 TCCGTGATTTCTTTTCCTTCGTC 59.256 43.478 0.00 0.00 0.00 4.20
164 165 3.735591 TCCGTGATTTCTTTTCCTTCGT 58.264 40.909 0.00 0.00 0.00 3.85
165 166 4.451096 TCTTCCGTGATTTCTTTTCCTTCG 59.549 41.667 0.00 0.00 0.00 3.79
166 167 5.941948 TCTTCCGTGATTTCTTTTCCTTC 57.058 39.130 0.00 0.00 0.00 3.46
167 168 5.183904 CCATCTTCCGTGATTTCTTTTCCTT 59.816 40.000 0.00 0.00 0.00 3.36
168 169 4.702131 CCATCTTCCGTGATTTCTTTTCCT 59.298 41.667 0.00 0.00 0.00 3.36
169 170 4.142381 CCCATCTTCCGTGATTTCTTTTCC 60.142 45.833 0.00 0.00 0.00 3.13
170 171 4.700213 TCCCATCTTCCGTGATTTCTTTTC 59.300 41.667 0.00 0.00 0.00 2.29
171 172 4.662278 TCCCATCTTCCGTGATTTCTTTT 58.338 39.130 0.00 0.00 0.00 2.27
172 173 4.301072 TCCCATCTTCCGTGATTTCTTT 57.699 40.909 0.00 0.00 0.00 2.52
173 174 4.265073 CTTCCCATCTTCCGTGATTTCTT 58.735 43.478 0.00 0.00 0.00 2.52
174 175 3.370953 CCTTCCCATCTTCCGTGATTTCT 60.371 47.826 0.00 0.00 0.00 2.52
175 176 2.945668 CCTTCCCATCTTCCGTGATTTC 59.054 50.000 0.00 0.00 0.00 2.17
176 177 2.945890 GCCTTCCCATCTTCCGTGATTT 60.946 50.000 0.00 0.00 0.00 2.17
177 178 1.408822 GCCTTCCCATCTTCCGTGATT 60.409 52.381 0.00 0.00 0.00 2.57
178 179 0.181350 GCCTTCCCATCTTCCGTGAT 59.819 55.000 0.00 0.00 0.00 3.06
179 180 1.602237 GCCTTCCCATCTTCCGTGA 59.398 57.895 0.00 0.00 0.00 4.35
180 181 1.452108 GGCCTTCCCATCTTCCGTG 60.452 63.158 0.00 0.00 0.00 4.94
181 182 2.998949 GGCCTTCCCATCTTCCGT 59.001 61.111 0.00 0.00 0.00 4.69
191 192 3.978571 GAAGCGTCAGGGGCCTTCC 62.979 68.421 0.84 0.00 0.00 3.46
192 193 2.436824 GAAGCGTCAGGGGCCTTC 60.437 66.667 0.84 0.00 0.00 3.46
193 194 2.930562 AGAAGCGTCAGGGGCCTT 60.931 61.111 0.84 0.00 0.00 4.35
194 195 3.710722 CAGAAGCGTCAGGGGCCT 61.711 66.667 0.84 0.00 0.00 5.19
195 196 4.785453 CCAGAAGCGTCAGGGGCC 62.785 72.222 3.04 0.00 0.00 5.80
196 197 3.672295 CTCCAGAAGCGTCAGGGGC 62.672 68.421 11.01 0.00 31.33 5.80
197 198 1.333636 ATCTCCAGAAGCGTCAGGGG 61.334 60.000 11.01 7.93 32.03 4.79
198 199 0.179089 CATCTCCAGAAGCGTCAGGG 60.179 60.000 11.01 7.54 31.33 4.45
199 200 0.179089 CCATCTCCAGAAGCGTCAGG 60.179 60.000 4.66 4.66 0.00 3.86
200 201 0.820226 TCCATCTCCAGAAGCGTCAG 59.180 55.000 1.61 0.00 0.00 3.51
201 202 0.820226 CTCCATCTCCAGAAGCGTCA 59.180 55.000 1.61 0.00 0.00 4.35
202 203 1.107114 TCTCCATCTCCAGAAGCGTC 58.893 55.000 0.00 0.00 0.00 5.19
203 204 0.820871 GTCTCCATCTCCAGAAGCGT 59.179 55.000 0.00 0.00 0.00 5.07
204 205 0.248825 CGTCTCCATCTCCAGAAGCG 60.249 60.000 0.00 0.00 0.00 4.68
205 206 0.820871 ACGTCTCCATCTCCAGAAGC 59.179 55.000 0.00 0.00 0.00 3.86
206 207 1.135915 CCACGTCTCCATCTCCAGAAG 59.864 57.143 0.00 0.00 0.00 2.85
207 208 1.186200 CCACGTCTCCATCTCCAGAA 58.814 55.000 0.00 0.00 0.00 3.02
208 209 0.684479 CCCACGTCTCCATCTCCAGA 60.684 60.000 0.00 0.00 0.00 3.86
209 210 1.819229 CCCACGTCTCCATCTCCAG 59.181 63.158 0.00 0.00 0.00 3.86
210 211 2.359169 GCCCACGTCTCCATCTCCA 61.359 63.158 0.00 0.00 0.00 3.86
211 212 2.501610 GCCCACGTCTCCATCTCC 59.498 66.667 0.00 0.00 0.00 3.71
212 213 2.359169 TGGCCCACGTCTCCATCTC 61.359 63.158 0.00 0.00 0.00 2.75
213 214 2.284625 TGGCCCACGTCTCCATCT 60.285 61.111 0.00 0.00 0.00 2.90
214 215 2.125106 GTGGCCCACGTCTCCATC 60.125 66.667 0.00 0.00 31.83 3.51
215 216 2.927856 TGTGGCCCACGTCTCCAT 60.928 61.111 9.78 0.00 37.14 3.41
216 217 3.625897 CTGTGGCCCACGTCTCCA 61.626 66.667 9.78 0.00 37.14 3.86
217 218 4.394712 CCTGTGGCCCACGTCTCC 62.395 72.222 9.78 0.00 37.14 3.71
228 229 2.260869 CCTTTCACGTGGCCTGTGG 61.261 63.158 22.98 11.04 37.91 4.17
229 230 2.908073 GCCTTTCACGTGGCCTGTG 61.908 63.158 17.00 19.07 43.11 3.66
230 231 2.594592 GCCTTTCACGTGGCCTGT 60.595 61.111 17.00 0.00 43.11 4.00
231 232 3.726517 CGCCTTTCACGTGGCCTG 61.727 66.667 17.00 3.74 45.90 4.85
232 233 3.254024 ATCGCCTTTCACGTGGCCT 62.254 57.895 17.00 0.00 45.90 5.19
233 234 2.746277 ATCGCCTTTCACGTGGCC 60.746 61.111 17.00 0.00 45.90 5.36
234 235 2.480555 CATCGCCTTTCACGTGGC 59.519 61.111 17.00 10.34 45.25 5.01
235 236 1.375396 TCCATCGCCTTTCACGTGG 60.375 57.895 17.00 0.00 34.87 4.94
236 237 1.787847 GTCCATCGCCTTTCACGTG 59.212 57.895 9.94 9.94 0.00 4.49
237 238 1.736645 CGTCCATCGCCTTTCACGT 60.737 57.895 0.00 0.00 0.00 4.49
238 239 1.736645 ACGTCCATCGCCTTTCACG 60.737 57.895 0.00 0.00 44.19 4.35
239 240 1.635663 CCACGTCCATCGCCTTTCAC 61.636 60.000 0.00 0.00 44.19 3.18
240 241 1.375396 CCACGTCCATCGCCTTTCA 60.375 57.895 0.00 0.00 44.19 2.69
241 242 2.750888 GCCACGTCCATCGCCTTTC 61.751 63.158 0.00 0.00 44.19 2.62
242 243 2.746277 GCCACGTCCATCGCCTTT 60.746 61.111 0.00 0.00 44.19 3.11
243 244 1.895020 TAAGCCACGTCCATCGCCTT 61.895 55.000 0.00 0.00 44.19 4.35
244 245 1.895020 TTAAGCCACGTCCATCGCCT 61.895 55.000 0.00 0.00 44.19 5.52
245 246 1.022451 TTTAAGCCACGTCCATCGCC 61.022 55.000 0.00 0.00 44.19 5.54
246 247 0.800012 TTTTAAGCCACGTCCATCGC 59.200 50.000 0.00 0.00 44.19 4.58
247 248 3.117434 CTTTTTAAGCCACGTCCATCG 57.883 47.619 0.00 0.00 46.00 3.84
259 260 3.663908 CTGATCTCGCACGCTTTTTAAG 58.336 45.455 0.00 0.00 0.00 1.85
260 261 2.159707 GCTGATCTCGCACGCTTTTTAA 60.160 45.455 0.00 0.00 0.00 1.52
261 262 1.393539 GCTGATCTCGCACGCTTTTTA 59.606 47.619 0.00 0.00 0.00 1.52
262 263 0.166814 GCTGATCTCGCACGCTTTTT 59.833 50.000 0.00 0.00 0.00 1.94
263 264 1.639298 GGCTGATCTCGCACGCTTTT 61.639 55.000 9.27 0.00 0.00 2.27
264 265 2.103042 GGCTGATCTCGCACGCTTT 61.103 57.895 9.27 0.00 0.00 3.51
265 266 2.510238 GGCTGATCTCGCACGCTT 60.510 61.111 9.27 0.00 0.00 4.68
266 267 4.862092 CGGCTGATCTCGCACGCT 62.862 66.667 9.27 0.00 0.00 5.07
268 269 4.498520 ACCGGCTGATCTCGCACG 62.499 66.667 0.00 9.45 0.00 5.34
269 270 2.583593 GACCGGCTGATCTCGCAC 60.584 66.667 0.00 0.02 0.00 5.34
270 271 3.838271 GGACCGGCTGATCTCGCA 61.838 66.667 0.00 0.00 0.00 5.10
271 272 2.852495 TTTGGACCGGCTGATCTCGC 62.852 60.000 0.00 0.00 0.00 5.03
272 273 0.391130 TTTTGGACCGGCTGATCTCG 60.391 55.000 0.00 0.00 0.00 4.04
273 274 1.740025 CTTTTTGGACCGGCTGATCTC 59.260 52.381 0.00 0.00 0.00 2.75
274 275 1.351017 TCTTTTTGGACCGGCTGATCT 59.649 47.619 0.00 0.00 0.00 2.75
275 276 1.821216 TCTTTTTGGACCGGCTGATC 58.179 50.000 0.00 0.00 0.00 2.92
276 277 1.886542 GTTCTTTTTGGACCGGCTGAT 59.113 47.619 0.00 0.00 0.00 2.90
277 278 1.314730 GTTCTTTTTGGACCGGCTGA 58.685 50.000 0.00 0.00 0.00 4.26
278 279 0.040425 CGTTCTTTTTGGACCGGCTG 60.040 55.000 0.00 0.00 0.00 4.85
279 280 0.464916 ACGTTCTTTTTGGACCGGCT 60.465 50.000 0.00 0.00 0.00 5.52
280 281 0.382873 AACGTTCTTTTTGGACCGGC 59.617 50.000 0.00 0.00 0.00 6.13
281 282 2.356695 AGAAACGTTCTTTTTGGACCGG 59.643 45.455 0.00 0.00 36.36 5.28
282 283 3.311596 AGAGAAACGTTCTTTTTGGACCG 59.688 43.478 0.00 0.00 40.87 4.79
283 284 4.895224 AGAGAAACGTTCTTTTTGGACC 57.105 40.909 0.00 0.00 40.87 4.46
292 293 9.831737 CATTCATGATAAAAAGAGAAACGTTCT 57.168 29.630 0.00 0.00 44.21 3.01
293 294 9.065871 CCATTCATGATAAAAAGAGAAACGTTC 57.934 33.333 0.00 0.00 0.00 3.95
294 295 8.028938 CCCATTCATGATAAAAAGAGAAACGTT 58.971 33.333 0.00 0.00 0.00 3.99
295 296 7.176690 ACCCATTCATGATAAAAAGAGAAACGT 59.823 33.333 0.00 0.00 0.00 3.99
296 297 7.485913 CACCCATTCATGATAAAAAGAGAAACG 59.514 37.037 0.00 0.00 0.00 3.60
297 298 8.522830 TCACCCATTCATGATAAAAAGAGAAAC 58.477 33.333 0.00 0.00 0.00 2.78
298 299 8.648698 TCACCCATTCATGATAAAAAGAGAAA 57.351 30.769 0.00 0.00 0.00 2.52
299 300 8.648698 TTCACCCATTCATGATAAAAAGAGAA 57.351 30.769 0.00 0.00 0.00 2.87
300 301 8.648698 TTTCACCCATTCATGATAAAAAGAGA 57.351 30.769 0.00 0.00 0.00 3.10
301 302 9.709495 TTTTTCACCCATTCATGATAAAAAGAG 57.291 29.630 0.00 0.00 0.00 2.85
324 325 4.033932 GCAAGGTGCGTTTCTTCAATTTTT 59.966 37.500 0.00 0.00 31.71 1.94
325 326 3.555547 GCAAGGTGCGTTTCTTCAATTTT 59.444 39.130 0.00 0.00 31.71 1.82
326 327 3.123050 GCAAGGTGCGTTTCTTCAATTT 58.877 40.909 0.00 0.00 31.71 1.82
327 328 2.742774 GCAAGGTGCGTTTCTTCAATT 58.257 42.857 0.00 0.00 31.71 2.32
328 329 2.422276 GCAAGGTGCGTTTCTTCAAT 57.578 45.000 0.00 0.00 31.71 2.57
329 330 3.936585 GCAAGGTGCGTTTCTTCAA 57.063 47.368 0.00 0.00 31.71 2.69
347 348 1.006571 ACAACTGGTCGGTGCGTAG 60.007 57.895 0.00 0.00 0.00 3.51
348 349 1.007038 GACAACTGGTCGGTGCGTA 60.007 57.895 0.00 0.00 36.65 4.42
411 412 7.275560 GCAATACACGTGATATGCACTATGATA 59.724 37.037 25.01 0.00 45.49 2.15
416 417 4.055360 GGCAATACACGTGATATGCACTA 58.945 43.478 29.91 11.91 45.49 2.74
519 521 2.091775 AGATTCAGGGGTAGCGACTAGT 60.092 50.000 0.00 0.00 0.00 2.57
540 542 1.851065 TTGATGCTGGGCAGGCTACA 61.851 55.000 0.00 0.00 43.65 2.74
649 652 8.534496 AGAAAGTATAGTATTGTACACGGGTTT 58.466 33.333 0.00 0.00 0.00 3.27
683 689 1.813753 CATCGGCACCGGGTTACAG 60.814 63.158 6.32 0.00 40.25 2.74
686 692 1.046472 ATCTCATCGGCACCGGGTTA 61.046 55.000 6.32 0.00 40.25 2.85
724 737 0.320683 TCGACGTCCTCGGTGTCTTA 60.321 55.000 10.58 0.00 43.16 2.10
731 744 3.878519 GCTCCTCGACGTCCTCGG 61.879 72.222 10.58 8.00 43.16 4.63
820 833 4.574599 AATTCAGCACAAAGGACTCAAC 57.425 40.909 0.00 0.00 0.00 3.18
846 859 1.073722 TTCAGAAGCCTGGGCACAG 59.926 57.895 9.70 9.70 44.88 3.66
849 862 2.129555 GAGGTTCAGAAGCCTGGGCA 62.130 60.000 14.39 0.00 44.88 5.36
883 896 1.337384 TGAGTGGGATGGGGACGATG 61.337 60.000 0.00 0.00 0.00 3.84
886 899 2.584608 GTGAGTGGGATGGGGACG 59.415 66.667 0.00 0.00 0.00 4.79
893 906 2.846206 TGATTTGCTAGGTGAGTGGGAT 59.154 45.455 0.00 0.00 0.00 3.85
896 909 5.468072 GTGATATGATTTGCTAGGTGAGTGG 59.532 44.000 0.00 0.00 0.00 4.00
945 958 1.228003 TGGTGGTTTCGCAACGGAT 60.228 52.632 0.00 0.00 33.13 4.18
946 959 1.890041 CTGGTGGTTTCGCAACGGA 60.890 57.895 0.00 0.00 33.13 4.69
949 962 1.606668 TGATTCTGGTGGTTTCGCAAC 59.393 47.619 0.00 0.00 0.00 4.17
954 972 6.539103 GTCTACCTTATGATTCTGGTGGTTTC 59.461 42.308 0.00 0.00 33.60 2.78
965 983 7.050970 TGCGTAGAATGTCTACCTTATGATT 57.949 36.000 9.30 0.00 44.89 2.57
970 988 4.158949 TGCTTGCGTAGAATGTCTACCTTA 59.841 41.667 9.30 0.00 44.89 2.69
971 989 3.056107 TGCTTGCGTAGAATGTCTACCTT 60.056 43.478 9.30 0.00 44.89 3.50
972 990 2.496070 TGCTTGCGTAGAATGTCTACCT 59.504 45.455 9.30 0.00 44.89 3.08
973 991 2.860735 CTGCTTGCGTAGAATGTCTACC 59.139 50.000 9.30 4.17 44.89 3.18
974 992 3.770666 TCTGCTTGCGTAGAATGTCTAC 58.229 45.455 5.50 5.50 44.41 2.59
975 993 3.735208 GCTCTGCTTGCGTAGAATGTCTA 60.735 47.826 0.00 0.00 31.29 2.59
976 994 2.886081 CTCTGCTTGCGTAGAATGTCT 58.114 47.619 0.00 0.00 31.29 3.41
977 995 1.325943 GCTCTGCTTGCGTAGAATGTC 59.674 52.381 0.00 0.00 31.29 3.06
978 996 1.338105 TGCTCTGCTTGCGTAGAATGT 60.338 47.619 0.00 0.00 31.29 2.71
979 997 1.362768 TGCTCTGCTTGCGTAGAATG 58.637 50.000 0.00 0.00 31.29 2.67
980 998 2.099141 TTGCTCTGCTTGCGTAGAAT 57.901 45.000 0.00 0.00 31.29 2.40
981 999 1.877637 TTTGCTCTGCTTGCGTAGAA 58.122 45.000 0.00 0.00 31.29 2.10
982 1000 1.733912 CATTTGCTCTGCTTGCGTAGA 59.266 47.619 0.00 0.00 0.00 2.59
983 1001 1.202110 CCATTTGCTCTGCTTGCGTAG 60.202 52.381 0.00 0.00 0.00 3.51
984 1002 0.804364 CCATTTGCTCTGCTTGCGTA 59.196 50.000 0.00 0.00 0.00 4.42
985 1003 1.582968 CCATTTGCTCTGCTTGCGT 59.417 52.632 0.00 0.00 0.00 5.24
1050 1068 3.062466 CCTGTGGCGACGAGGAGA 61.062 66.667 10.43 0.00 0.00 3.71
1077 1095 9.793259 ATGGTCTTAACAAATTGAGAAGACTAA 57.207 29.630 26.91 20.81 39.82 2.24
1101 1119 4.142534 GGATGCATATTTGACCATCCGATG 60.143 45.833 0.00 0.93 42.85 3.84
1103 1121 3.411446 GGATGCATATTTGACCATCCGA 58.589 45.455 0.00 0.00 42.85 4.55
1110 1128 7.161404 TGGATACTACAGGATGCATATTTGAC 58.839 38.462 0.00 0.00 37.14 3.18
1114 1132 7.121759 GCAAATGGATACTACAGGATGCATATT 59.878 37.037 8.68 4.02 33.50 1.28
1122 1140 3.704566 AGACGCAAATGGATACTACAGGA 59.295 43.478 0.00 0.00 37.61 3.86
1229 1276 4.388499 CCGCGGTACCTGTGGCTT 62.388 66.667 19.50 0.00 0.00 4.35
1274 1506 1.591594 CTCGGTGTTGCAGACGTGT 60.592 57.895 0.00 0.00 0.00 4.49
1301 1533 1.398958 GGAACTTGCACTTGCCCCAA 61.399 55.000 0.00 0.00 41.18 4.12
1303 1535 1.832167 TGGAACTTGCACTTGCCCC 60.832 57.895 0.00 0.00 41.18 5.80
1355 1587 1.281899 GTCGATGAAGTGGCTAGCAC 58.718 55.000 18.24 12.66 0.00 4.40
1413 1648 1.743958 CACTACGAAGATCACGAGGGT 59.256 52.381 16.73 9.96 34.70 4.34
1422 1657 2.092103 AGGAGAGGAGCACTACGAAGAT 60.092 50.000 0.00 0.00 0.00 2.40
1428 1663 2.416162 CGAAACAGGAGAGGAGCACTAC 60.416 54.545 0.00 0.00 0.00 2.73
1429 1664 1.819288 CGAAACAGGAGAGGAGCACTA 59.181 52.381 0.00 0.00 0.00 2.74
1434 1669 2.094649 GGTACACGAAACAGGAGAGGAG 60.095 54.545 0.00 0.00 0.00 3.69
1470 1864 7.067859 ACAACGCATGTAGACCTTACTAGATTA 59.932 37.037 0.00 0.00 41.63 1.75
1521 1918 4.933400 AGATTACACCGTACGAAGCAAAAT 59.067 37.500 18.76 8.36 0.00 1.82
1531 1928 4.023365 CACCCTAGCTAGATTACACCGTAC 60.023 50.000 22.70 0.00 0.00 3.67
1605 2002 1.450312 GGACAGTTGGAGATGCCCG 60.450 63.158 0.00 0.00 34.97 6.13
1606 2003 1.077429 GGGACAGTTGGAGATGCCC 60.077 63.158 0.00 0.00 34.97 5.36
1607 2004 1.450312 CGGGACAGTTGGAGATGCC 60.450 63.158 0.00 0.00 37.10 4.40
1608 2005 2.109126 GCGGGACAGTTGGAGATGC 61.109 63.158 0.00 0.00 0.00 3.91
1609 2006 0.742281 CTGCGGGACAGTTGGAGATG 60.742 60.000 0.00 0.00 41.86 2.90
1610 2007 1.599047 CTGCGGGACAGTTGGAGAT 59.401 57.895 0.00 0.00 41.86 2.75
1611 2008 3.059982 CTGCGGGACAGTTGGAGA 58.940 61.111 0.00 0.00 41.86 3.71
1618 2015 2.704572 AGAAAAGATTCTGCGGGACAG 58.295 47.619 0.00 0.00 44.25 3.51
1619 2016 2.859165 AGAAAAGATTCTGCGGGACA 57.141 45.000 0.00 0.00 44.25 4.02
1627 2024 3.881688 CGGATGGATGCAGAAAAGATTCT 59.118 43.478 0.00 0.00 46.91 2.40
1628 2025 3.629398 ACGGATGGATGCAGAAAAGATTC 59.371 43.478 0.00 0.00 35.70 2.52
1629 2026 3.379372 CACGGATGGATGCAGAAAAGATT 59.621 43.478 0.00 0.00 0.00 2.40
1630 2027 2.947652 CACGGATGGATGCAGAAAAGAT 59.052 45.455 0.00 0.00 0.00 2.40
1631 2028 2.358957 CACGGATGGATGCAGAAAAGA 58.641 47.619 0.00 0.00 0.00 2.52
1632 2029 2.838386 CACGGATGGATGCAGAAAAG 57.162 50.000 0.00 0.00 0.00 2.27
1649 2046 0.246635 ACTGTATGCGACCAGTCCAC 59.753 55.000 0.00 0.00 37.34 4.02
1650 2047 0.973632 AACTGTATGCGACCAGTCCA 59.026 50.000 2.91 0.00 40.91 4.02
1651 2048 2.000447 GAAACTGTATGCGACCAGTCC 59.000 52.381 2.91 0.00 40.91 3.85
1653 2050 2.224185 TGTGAAACTGTATGCGACCAGT 60.224 45.455 0.00 0.00 43.53 4.00
1658 2055 4.758688 AGATGATGTGAAACTGTATGCGA 58.241 39.130 0.00 0.00 38.04 5.10
1667 2064 5.221224 TGGTTGGTTTGAGATGATGTGAAAC 60.221 40.000 0.00 0.00 37.35 2.78
1675 2072 4.639078 TCATCTGGTTGGTTTGAGATGA 57.361 40.909 0.00 0.00 45.42 2.92
1678 2075 5.048782 CGAATTTCATCTGGTTGGTTTGAGA 60.049 40.000 0.00 0.00 0.00 3.27
1703 2100 8.523915 TTATATGAAATCTGGCAGTGTTTGAT 57.476 30.769 19.73 18.67 0.00 2.57
1704 2101 7.936496 TTATATGAAATCTGGCAGTGTTTGA 57.064 32.000 19.73 14.36 0.00 2.69
1712 2109 6.017192 CCGTCATGTTTATATGAAATCTGGCA 60.017 38.462 0.00 0.00 38.69 4.92
1750 2148 9.318041 CGTCATGTTTATATCAAATTCGGATTC 57.682 33.333 0.00 0.00 0.00 2.52
1753 2151 6.987404 TCCGTCATGTTTATATCAAATTCGGA 59.013 34.615 0.00 0.00 38.55 4.55
1762 2161 9.256477 TGTACTGAAATCCGTCATGTTTATATC 57.744 33.333 0.00 0.00 0.00 1.63
1790 2189 3.384668 CGGACTAGCACCATTGATGTAG 58.615 50.000 7.23 0.00 0.00 2.74
1851 2261 1.207089 AGAAGACAAATGGATCCGCGA 59.793 47.619 8.23 0.00 0.00 5.87
1900 2311 1.076192 ATACCTTCGGGGCTCTCGT 60.076 57.895 0.00 0.00 40.03 4.18
1944 2355 4.802051 GAAGCATCAGCCGGGGCA 62.802 66.667 12.97 0.00 44.88 5.36
1945 2356 4.802051 TGAAGCATCAGCCGGGGC 62.802 66.667 2.18 0.18 43.56 5.80
1983 2420 2.035442 GGGCTCCACGAAAGCAGAC 61.035 63.158 9.82 0.00 41.66 3.51
2002 2439 0.173708 GACCTCTGTCGATCCCACAC 59.826 60.000 0.00 0.00 0.00 3.82
2029 2466 2.103263 AGTGTCTTGCTCGGTTCTTCTT 59.897 45.455 0.00 0.00 0.00 2.52
2075 2512 2.035626 CCCATGAAGGCCACCGTT 59.964 61.111 5.01 0.00 35.39 4.44
2076 2513 2.933287 TCCCATGAAGGCCACCGT 60.933 61.111 5.01 0.00 35.39 4.83
2102 2539 0.759436 AGAACACGGGAGTCCACTGT 60.759 55.000 12.30 8.31 44.67 3.55
2106 2543 1.891150 GAAGTAGAACACGGGAGTCCA 59.109 52.381 12.30 0.00 44.67 4.02
2216 2670 1.292223 GACAACTGCGCCTCCAGTA 59.708 57.895 4.18 0.00 44.86 2.74
2219 2673 2.942796 ATCGACAACTGCGCCTCCA 61.943 57.895 4.18 0.00 0.00 3.86
2228 2682 3.579709 GTCATCACTGTCATCGACAACT 58.420 45.455 0.00 0.00 42.26 3.16
2231 2685 1.732405 GCGTCATCACTGTCATCGACA 60.732 52.381 0.00 0.00 40.50 4.35
2237 2733 2.261361 CGGGCGTCATCACTGTCA 59.739 61.111 0.00 0.00 0.00 3.58
2274 2770 2.618312 GAATTGCTCCATGCCGGCAC 62.618 60.000 35.50 19.90 42.00 5.01
2282 2791 0.749454 GGAGTGGCGAATTGCTCCAT 60.749 55.000 4.73 0.00 45.00 3.41
2317 2826 2.965831 TGGTTCAGCAACTCACTACTCT 59.034 45.455 0.00 0.00 32.50 3.24
2321 2830 1.872237 GCGTGGTTCAGCAACTCACTA 60.872 52.381 0.00 0.00 34.24 2.74
2324 2833 1.153269 TGCGTGGTTCAGCAACTCA 60.153 52.632 0.00 0.00 40.78 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.